BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00006419
         (4096 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1806   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1805   0.0  
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1805   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1805   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]  1804   0.0  
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...  1797   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1782   0.0  
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1768   0.0  
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...  1754   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1750   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...  1740   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...  1734   0.0  
gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]      1717   0.0  
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe...  1675   0.0  
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...  1675   0.0  
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1674   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1670   0.0  
gb|EPS62146.1| hypothetical protein M569_12646, partial [Genlise...  1669   0.0  
ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1647   0.0  
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1646   0.0  

>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1806 bits (4678), Expect = 0.0
 Identities = 881/1198 (73%), Positives = 1005/1198 (83%)
 Frame = +2

Query: 197  MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 376
            MGSE   K +VVTQIS GG + +V A+ML +Y E  +G VWRCRLK SSTPPDSYP Y+I
Sbjct: 1    MGSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 377  DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 556
            D E +QR ++YEKV PHAFVHFA   SA  AL AAG  ELIL  KPL VSLGPENP+ LN
Sbjct: 61   DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 557  EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 736
            ++RRTT+P+K SDV VE+GV+ S+++FVVGWRGPRTGVDF VDPFNG CK+ FTKDTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFS 180

Query: 737  FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 916
            F+GE + A+IKCNF+IEF+ REI EIK  +DF SL++LLQLASSPL++YRTADDDI+ESV
Sbjct: 181  FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 917  PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 1096
             FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP   KA+ Y    RVP++    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1097 RHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 1276
            R  L V+DEPDFG+ M DPFFC Q  EGISFKV+FLVNAV+HKGI+NQHQM+ +FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 1277 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 1456
            SR EEVN+ ALKHM SYK P+ DA + L  +QKWLL NPKLL+R  E++DIVEVRRL+IT
Sbjct: 360  SRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419

Query: 1457 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 1636
            P KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M  LN+NVLTYY   + R ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1637 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 1816
            SNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1817 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 1996
            G+F+NRN+AKCAARMGQCFSSTYATVEVPS +VNS+LPDIERNGYVFSDGIGM+S  LA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 1997 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 2176
            EVAEKL +S +PP AYQIRYAG KGV+A WP   DG  L LR SM+KF+SNHTILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2177 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 2356
            TRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S LD+ML D+D+AFDV+T SC + G+
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2357 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 2536
            TAAIMLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPSGRWLMGCLDELG LE G
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2537 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 2716
            QCFIQVS PSLE  FVKHG +FS+ ++ LQVVKGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 2717 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 2896
             HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y   E ++L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 2897 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 3076
             R V H DII+FF+KNMV ESLG ICNAHVVHADLS++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 3077 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 3256
            TGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGKLYR++KD  D   E S+      +
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 3257 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 3436
            +I YD  LEI GS +FI DAWN KCSYDGQL GLLGQYKVNREEE+VTGHIWSMPKYS+K
Sbjct: 1020 DIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3437 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 3616
            KQGELKERLKHAY+TLRKEFR VFE MDP+FD L DDEKN MYE+KASAWYQVTYH  W+
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 3617 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
             +S ELQ+ D    TVMLSFAWIAADYLARIKIR RR +   STKPI+SLGRYL D I
Sbjct: 1140 ARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1805 bits (4676), Expect = 0.0
 Identities = 880/1198 (73%), Positives = 1007/1198 (84%)
 Frame = +2

Query: 197  MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 376
            MGSE   K +VVTQISVGG + +V A+ML +Y E  +G VWRCRLK SSTPPDSYP Y+I
Sbjct: 1    MGSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 377  DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 556
            D E +QR ++YEKV PHAFVHFA   SA  AL AAG  ELIL  KPL VSLGPENP+ LN
Sbjct: 61   DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 557  EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 736
            ++RRTT+P+K SDV VE+GV+ S+++FVVGWRGPRTGVDFLVDPFNG CK+ FTKDTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 737  FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 916
            F+GE + A+IKCNF+IEFL REI EIK  +DF SL++L QLASSPL++YRTADDDI+ESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240

Query: 917  PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 1096
             FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP   KA+ Y   RRVP++    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300

Query: 1097 RHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 1276
            R  L V+DEPDFG+ M DPFFC Q  EGISF+VLFLVNAV+HKGI+NQHQM+ +FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLR 359

Query: 1277 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 1456
            S  EEVN+ ALKHM SYK P+ DA + L  +QKWLL NPKLL+R  E++DIVEVRRL+IT
Sbjct: 360  SHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419

Query: 1457 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 1636
            P KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M  LN+NVLTYY   + R ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1637 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 1816
            SNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1817 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 1996
            G+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+LPDIERNGYVFSDGIGM+S  LA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 1997 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 2176
            EVAEKL +S +PP AYQIRYAG KGV+A WP   DG  L LR SM+KF+SNHTILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2177 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 2356
            TRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S LD+ML D+D+AFDV+T SC + G+
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2357 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 2536
            TAA+MLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPSGRWLMGCLDELG LE G
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2537 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 2716
            QCFIQVS PSLE  FVKHG +FS+ +K LQVVKGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 2717 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 2896
             HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y   E ++L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 2897 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 3076
             R V H DII+FF+KNMV ESLG ICNAHVVHADLS++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 3077 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 3256
            TGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGKLYR++KD  D   E S+      +
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 3257 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 3436
            +I YD  LEI GS +FI DAWN KCSYDGQL GLLGQYKVNREEE+VTG+IWSMPKY++K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAK 1079

Query: 3437 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 3616
            KQGELKERLKHAY+TLRKEFR VFE M+P+FD L DDEKN MYE+KASAWYQVTYH  W+
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 3617 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
             +S ELQ+ D    TVMLSFAWIAADYLARIKIR RR +   STKPI+SLGRYL D I
Sbjct: 1140 ARSLELQLADAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1805 bits (4675), Expect = 0.0
 Identities = 882/1198 (73%), Positives = 1005/1198 (83%)
 Frame = +2

Query: 197  MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 376
            MGSE   K++VVTQISVGG + +V A+ML +Y E  +G VWRCRLK S+TPPDSYP Y+I
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60

Query: 377  DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 556
            D E + R  DYEKV PHAFVHFA   SA  AL AAG  ELIL  KPL VSLGPENP+ LN
Sbjct: 61   DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 557  EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 736
            ++RRTT+P+K SDV VE+GV+ S+++FVVGWRGPRTGVDFLVDPFNG CK+ FTKDTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 737  FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 916
            F+GE + A+IKCNF+IEFL REI EIK  +DF SL++L QLASSPL++YRTADDDI+ESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240

Query: 917  PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 1096
             FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP   KA+ Y   RRVP++    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300

Query: 1097 RHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 1276
            R  L V+DEPDFG+ M DPFFC Q  EGISFKV+FLVNAV+HKGI+NQHQM+ +FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 1277 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 1456
            SR EEVN  ALKHM SYK P+ DA + L  +QKWLL NPKLLER  E++DIVEVRRL+IT
Sbjct: 360  SRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1457 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 1636
            P KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M  LN+NVLTYY   + R ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1637 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 1816
            SNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1817 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 1996
            G+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+LPDIERNGYVFSDGIGM+S  LA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 1997 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 2176
            EVAEKL ++ +PP AYQIRYAGYKGV+A WP   DG  L LR SM+KF+SNHTILEICSW
Sbjct: 600  EVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659

Query: 2177 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 2356
            TRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S LD+ML D+D+AFDV+T SC + G+
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2357 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 2536
            TAA+MLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPSGRWLMGCLDELG LE G
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2537 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 2716
            QCFIQVS PSLE  FVKHG +FS+ +K LQVVKGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 2717 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 2896
             HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y   E ++L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 2897 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 3076
             R V H DII+FF+KNMV ESLG ICNAHVVHADLS++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 3077 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 3256
            TGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGKLYR++KD  D   E S+      +
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 3257 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 3436
            +I YD  L I GS  FI DAWN KCSYDGQL GLLGQYKVNREEE+VTGHIWSMPKYS+K
Sbjct: 1020 DIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3437 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 3616
            KQGELKERLKHAY+TLRKEFR VFE MDP+FD L DDEKN MYE+KASAWYQVTY+  W+
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 3617 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
             +S ELQ+ D    TVMLSFAWIAADYLARIKIR R  +   STKPI+SLGRYL DKI
Sbjct: 1140 ARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1805 bits (4675), Expect = 0.0
 Identities = 879/1198 (73%), Positives = 1005/1198 (83%)
 Frame = +2

Query: 197  MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 376
            MGSE   K++VVTQISVGG + +V A+ML +Y E  +G VWRCRLK SSTPPDSYP +++
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60

Query: 377  DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 556
            D E +QR  DYEKV PHAFVHFA   SA  AL AAG  ELIL  KPL VSLGPENP+ LN
Sbjct: 61   DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 557  EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 736
            ++RRTT+P+K SDV +E+GV+ S+++FVVGWRGPRTGVDFLVDPFNG CK+ FTKDTAFS
Sbjct: 121  QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180

Query: 737  FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 916
            F+GE + A+IKCNF+IEFL REI EIK  +DF SL++LLQLASSPL++YRTADDDI+ESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 917  PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 1096
             FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP   KA+ Y    RVP++    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1097 RHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 1276
            R  L V+DEPDFG+ M DPFFC Q  EGISFKV+FLVNAV+HKGI+NQHQM+ +FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 1277 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 1456
            S  EEVN  ALKHM SYK P+ DA + L  ++KWLL NPKLLER  E++DIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1457 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 1636
            P KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M  LN+NVLTYY   + R ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1637 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 1816
            SNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1817 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 1996
            G+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+LPDIERNGYVFSDGIGM+S  LAV
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAV 599

Query: 1997 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 2176
            EVAEKL +S +PP AYQIRYAG KGV+A WP   DG  L LR SM+KF+SNHTILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2177 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 2356
            TRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S LD+ML D+D+AFDV+T SC + G+
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2357 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 2536
            TAAIMLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPSGRWLMGCLDELG LE G
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2537 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 2716
            QCFIQVS PSLE  F+KHG +FS+ +K LQVVKGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 2717 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 2896
            HHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y   E +++
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQM 899

Query: 2897 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 3076
             R V H DII+FF+KNMV ESLG ICNAHVVHADLS++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 3077 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 3256
            TGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGKLYR++KD  D   E S+       
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 3257 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 3436
            +I YD  LEI GS +FI DAWN KCSYDGQL GLLGQYKVNREEE+VTGHIWSMPKYS+K
Sbjct: 1020 DIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3437 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 3616
            KQGELKERLKHAY+TLRKEFR VFE M+P+FD L DDEKN MYE+KASAWYQVTY+  W+
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 3617 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
             +S ELQ+ D    TVMLSFAWIAADYLARIKIR R  +   STKPI+SLGRYL D I
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 1804 bits (4673), Expect = 0.0
 Identities = 881/1198 (73%), Positives = 1003/1198 (83%)
 Frame = +2

Query: 197  MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 376
            MGSE   K +VVTQISVGG + +V A+ML +Y E  +G VWRCRLK SSTPPDSYP Y+I
Sbjct: 1    MGSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 377  DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 556
            D E +QR ++YEKV PHAFVHFA   SA  AL AAG  EL+L  KPL VSLGPENP+ LN
Sbjct: 61   DAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLN 120

Query: 557  EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 736
            ++RRTT+P+K SDV VE+GV+ S+ +FVVGWRGPRTGVDFLVDPFNG CK+ FTKDT FS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFS 180

Query: 737  FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 916
            F+GE + A+IKCNF+IEFL REI EIK  +DF SL++LLQLASSPL++YRTADDDI+ESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 917  PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 1096
             FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP   KA+ Y    RVP++    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1097 RHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 1276
            R  L V+DEPDFG+ M DPFFC Q  EGISFKVLFL NAV+HKGI+NQHQM  +FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVLFLANAVLHKGIVNQHQMINEFFYLLR 359

Query: 1277 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 1456
            S  EEVN  ALKHM SYK P+ DA + L  +QKWLL NPKLLER  E++DIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1457 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 1636
            P KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M  LN+NVLTYY   + R ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1637 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 1816
            SNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1817 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 1996
            G+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+LPDIERNGYVFSDGIGM+S  LA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 1997 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 2176
            EVAEKL +S +PP AYQIRYAG KGV+A WP   DG  L LR SM+KF+SNHTILEICSW
Sbjct: 600  EVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2177 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 2356
            TRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M++ LD+ML D+D+AFDV+T SC + G+
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2357 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 2536
            TAA+MLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPSGRWLMGCLDELG LE G
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2537 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 2716
            QCFIQVS PSLE  FVKHGS+FS+ +K LQVVKGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 2717 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 2896
             HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDEN+IPPSK+SWIPM+Y   E ++L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQL 899

Query: 2897 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 3076
             R V H DII+FF+KNMV ESLG ICNAHVVHADLS++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 3077 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 3256
            TGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGKLYR++KD  D   E S+      +
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 3257 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 3436
            +I YD  LEI GS +FI DAWN KCSYDGQL GLLGQYKVNREEE+VTGHIWSMPKYS+K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3437 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 3616
            KQGELKERLKHAY+TLRKEFR VFE M+P+FD L DDEKN MYE+KASAWYQVTYH  W+
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 3617 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
             +S ELQ+ D    TVMLSFAWIAADYLARIKIR R      STKPI+SLGRYLADKI
Sbjct: 1140 ARSLELQIPDAVSSTVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRYLADKI 1197


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score = 1797 bits (4654), Expect = 0.0
 Identities = 875/1198 (73%), Positives = 1000/1198 (83%)
 Frame = +2

Query: 197  MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 376
            MGSE   K++VVTQISVGG + +V A+ML +Y E  +G VWRCRLK S+TPPDSYP Y++
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDV 60

Query: 377  DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 556
            D   + R  DYEKV PHAFVHFA   SA  AL AAG   LIL  KPL VSLGPENP+ LN
Sbjct: 61   DAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLN 120

Query: 557  EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 736
            ++RRTT+P+K SDV VE+GV+ S+++FVVGWRGPRTGVDF VDPFNG CK+ FTKDTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFS 180

Query: 737  FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 916
            F+GE K A+IKCNF+IEF+ REI EIK ++DF SL++LLQLASSPL++YRTADDDI+ESV
Sbjct: 181  FRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 917  PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 1096
             FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP   KA+ Y    RVP++    
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1097 RHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 1276
            R  L V+DEPDFG+ M DPFFC Q  EGISFKV+FLVNAV+HKGI+NQHQM+ +FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 1277 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 1456
            S  EEVN  ALKHM SYK P+ DA + L  +QKWLL NPKLLER  E++DIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1457 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 1636
            P KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M  LN+NVLTYY   + R ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1637 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 1816
            SNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAWFFAED    V  I +WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1817 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 1996
            G+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+LPDIERNGYVFSDGIGM+S  LA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAL 599

Query: 1997 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 2176
            EVAEKL +S +PP AYQIRYAG KGV+A WP   DG  L LR SM+KF+SNHTILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659

Query: 2177 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 2356
            TRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S L++ML D+D+AFDV+T SC + G+
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGN 719

Query: 2357 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 2536
            TAAIMLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPSGRWLMGCLDELG LE G
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2537 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 2716
            QCFIQVS PSLE  F+KHG +FS+ +K LQVVKGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 2717 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 2896
            HHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y   E ++L
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 2897 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 3076
             R V H DII+FF+KNMV ESLG ICNAHVVHADLS++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 3077 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 3256
            TGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGKLYR++KD  D   E S+       
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 3257 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 3436
            +I YD  LEI GS  F+ DAWNCKCSYDGQL GLLGQYKVNREEE+VTGHIWSMPKYS+K
Sbjct: 1020 DIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3437 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 3616
            KQGELKERLKHAY+ LRKEFR VFE MDP+FD L DDEKN MYE+KASAWYQVTY+  W+
Sbjct: 1080 KQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 3617 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
             +S ELQ+ D    TVMLSFAWIAADYLARI IR R  +   STKPI+SLGRYL D I
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1782 bits (4616), Expect = 0.0
 Identities = 871/1200 (72%), Positives = 1015/1200 (84%), Gaps = 2/1200 (0%)
 Frame = +2

Query: 197  MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 376
            M SE   K+MVVTQIS+GG ++ VTA  L  Y E++IG V RCRLKTSSTPP+SYP++EI
Sbjct: 1    MESEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEI 60

Query: 377  -DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHL 553
             DT  I+R +DY+KVEPHAFVHF    +AT ALDAAG+ EL L GKPLKVSLGPE P HL
Sbjct: 61   IDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHL 120

Query: 554  NEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAF 733
            N++RRTT P+K  DV +E+G++ SR+E+  GWRGP +GVDFLVDPF+G CK  FTKDTAF
Sbjct: 121  NQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAF 180

Query: 734  SFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKES 913
            SFKG  K AVIKCNF++EFL REI E++  RD  SLI+LLQL+SSP +YYRTADDDI+E+
Sbjct: 181  SFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEET 240

Query: 914  VPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYES 1093
            VPFDLLDDDDPWIRTTDFT SGAIGRCN+YRIS+ PRYG  L KA++YLR RRV V+ +S
Sbjct: 241  VPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDS 300

Query: 1094 PRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLL 1273
            P+ +L V+DEPDFG+PM DPFFCIQ+KEGI F+V+FLVNAVMHKGIINQHQ+S+KFFDLL
Sbjct: 301  PKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLL 360

Query: 1274 RSRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLII 1453
            RS+ +++N  ALKH+CSY+HP++DA++ L+LV KWLL NPKLL+ P+E++DIVEVRRL+I
Sbjct: 361  RSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVI 420

Query: 1454 TPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITS 1633
            TP+KAYCLPPEVELSNRVLRNY+ ++DRFLRVTFMDE M T+N NVL YYV P+ + ITS
Sbjct: 421  TPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITS 480

Query: 1634 NSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNW 1813
            NS PQ+T +FKRVK IL +GFYLCGRKYSFLAFSSNQLRDRSAWFFAEDK T V  IK+W
Sbjct: 481  NSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSW 540

Query: 1814 MGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLA 1993
            MGKFTNRN+AKCAARMGQCFSSTYATVEVPS +V  +LPDI+RNGY FSDGIG +   LA
Sbjct: 541  MGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEV-KELPDIKRNGYDFSDGIGKIVPDLA 599

Query: 1994 VEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICS 2173
            +EVAEKL++    P AYQIRYAG KGV+A WP+  DG  L  R SM KF S+HTILEICS
Sbjct: 600  MEVAEKLKLE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICS 658

Query: 2174 WTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQG 2353
            WTRFQPGFLNRQIVTLLSAL V D IFW+MQE+M+S+L++ML DTD+AFDV+  SC +QG
Sbjct: 659  WTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQG 718

Query: 2354 STAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEH 2533
            +TAAIMLSAGFKPQTEPHL+GMLT IRAAQ   LREKARIFVPSGRWLMGCLDELGVLE 
Sbjct: 719  NTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQ 778

Query: 2534 GQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPE 2713
            GQCFIQVS PSLE  F+KHGSRFS  +K L+V+KG+VAIAKNPCLHPGDVRILEAVDAP 
Sbjct: 779  GQCFIQVSSPSLENCFLKHGSRFSA-QKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPG 837

Query: 2714 LHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEARE 2893
            L HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTW+E LIPPSK+SW PM Y + EA+ 
Sbjct: 838  LEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKA 897

Query: 2894 LPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFP 3073
            L R+V   DII+FFTKNMVNE+LG ICNAHVVHAD S+YGALDE C+ LAE AA AVDFP
Sbjct: 898  LAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFP 957

Query: 3074 KTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFAL 3253
            KTGK+VT+PP LKPK+YPDFMGKEE QTY SNKILGK+YR+IKDA +    ESSEQ F  
Sbjct: 958  KTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGA 1017

Query: 3254 ENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSS 3433
            + + +D+DL I GS  FI DAW  KCSYDGQL GLLGQYKV REEE+VTGH+WSMPKY S
Sbjct: 1018 DKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKS 1077

Query: 3434 KKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESW 3613
            +KQGEL ERLKHAYS+L+KEFR++FE M+ +FDQL+DDEKN +YE+KASAWYQVTYH +W
Sbjct: 1078 RKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTW 1137

Query: 3614 LKKSKELQMVDDA-GKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
            +KKS ELQ  D+  G+ VMLSFAWI ADYLARIKIRR+ T N  S+KPI+SL R+L D+I
Sbjct: 1138 VKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1197


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
            tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
            tuberosum]
          Length = 1198

 Score = 1768 bits (4578), Expect = 0.0
 Identities = 860/1198 (71%), Positives = 996/1198 (83%)
 Frame = +2

Query: 197  MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 376
            MGSE   K++VVTQISVGG   +V A+ML +  E+ +G VWRCRLKTSSTPPDSYP Y+I
Sbjct: 1    MGSEGSEKDLVVTQISVGGFSNDVNAKMLSECLEDQVGQVWRCRLKTSSTPPDSYPTYDI 60

Query: 377  DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 556
            D E ++R ++Y KVEPHAFVHFA   SA +AL AA R EL L  KPLKVSLGPENP ++N
Sbjct: 61   DVENVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENPFNMN 120

Query: 557  EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 736
            ++RRT +P+K SDV VE+GV+ S ++FVVGWRGP +GV+FLVDPFNG CK+ FT+DTAF 
Sbjct: 121  KRRRTIMPFKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGTCKILFTRDTAFC 180

Query: 737  FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 916
            FKGE K AVIKCNF+IEFL REI EI   +DF SL++LLQL SSPL++YRTADDDI+ESV
Sbjct: 181  FKGEGKHAVIKCNFKIEFLLREINEINECKDFASLVLLLQLTSSPLVFYRTADDDIEESV 240

Query: 917  PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 1096
             FDLLDDDD WIRTTD T SGAIGR NTYRIS+RPR GP L KA+ Y R+ RVPV+ +  
Sbjct: 241  AFDLLDDDDQWIRTTDITCSGAIGRFNTYRISIRPRNGPSLKKAMNYFRESRVPVVEQGN 300

Query: 1097 RHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 1276
            R  L V+DEPDFG+ + +PFFC Q  EGISFKVLFLVNAV+ KGI+NQHQM+ +FF LLR
Sbjct: 301  RQMLRVRDEPDFGVSLSEPFFCFQNHEGISFKVLFLVNAVLQKGIVNQHQMTAEFFSLLR 360

Query: 1277 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 1456
               E VN  ALKH+ SYK P+ DA + L  VQKWL  NP LLER  +++D+VEVRRL+IT
Sbjct: 361  KHQEGVNLAALKHIFSYKRPVNDAIQKLASVQKWLFKNPNLLERTGQLDDVVEVRRLVIT 420

Query: 1457 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 1636
            P KAYCLPP VELSNRVLR Y++++DRFLRVTFMDE M  LN+NVLTYY   + R ITS+
Sbjct: 421  PTKAYCLPPTVELSNRVLRKYKHVSDRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSS 480

Query: 1637 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 1816
            SNPQRT +F+RVK IL+ GFYLCGR+YSFLAFS+NQLRDRSAWFFAE     V NI NWM
Sbjct: 481  SNPQRTGIFQRVKSILSKGFYLCGRRYSFLAFSANQLRDRSAWFFAEAPEIRVPNIINWM 540

Query: 1817 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 1996
            GKF NRN+AKCAARMGQCFSSTYATVEV  ++VNS+LPDIERNGYVFSDGIGMMS  L++
Sbjct: 541  GKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMSADLSI 600

Query: 1997 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 2176
            EVA KLQ+S +PPCAYQIRYAG KGV+A WP  KDG  L LR SM+KF+SNHTILEICSW
Sbjct: 601  EVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSW 660

Query: 2177 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 2356
            TR QPGFLNRQI+TLLS+LEV+D +FW MQ+ M+S+LD++L D+D+AFDV+T SC + G+
Sbjct: 661  TRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGN 720

Query: 2357 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 2536
            TAAIMLSAGFKPQ+EPHLRGML SIRAAQLGDLR K R+FVPSGRWLMGCLDEL  LE G
Sbjct: 721  TAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVPSGRWLMGCLDELRKLEQG 780

Query: 2537 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 2716
            QCFIQVS PSLE  FVKHG +FSE +K LQV+KGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 781  QCFIQVSSPSLETCFVKHGPKFSEIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPGL 840

Query: 2717 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 2896
            HHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SW+PMDYA  EA++L
Sbjct: 841  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMDYAPAEAKQL 900

Query: 2897 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 3076
             R V+H+DII+FF+KNMV ESLG ICNAHVVHADLS++GALDEKC+KLAELAA+AVDFPK
Sbjct: 901  GRQVQHTDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 960

Query: 3077 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 3256
            TGK+VTMP +LKPK+YPDFMGKE  QTY S KILGKLYR++ D  D    ESS   F  +
Sbjct: 961  TGKLVTMPFDLKPKMYPDFMGKEPFQTYESKKILGKLYRQVIDVYDAEGGESSGLEFVPK 1020

Query: 3257 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 3436
            +I YD ++EI G + FI DAWN KCSYDGQL GLLGQYKVN EEE+VTGHIWSMPKYS+K
Sbjct: 1021 DIPYDTNIEILGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAK 1080

Query: 3437 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 3616
            KQGELKERLKHAY+TLRKEFR VFE M+P+FD L  DEKN MYE+KASAWY+VTYH  W+
Sbjct: 1081 KQGELKERLKHAYNTLRKEFRNVFEQMEPDFDMLPVDEKNDMYERKASAWYRVTYHPHWV 1140

Query: 3617 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
             +S ELQ+ D     VMLSFAWIAADY+ARIKIR+R  +N  STKPI+ LGRYL +KI
Sbjct: 1141 TRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNSDSTKPINFLGRYLVNKI 1198


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
            gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
            6 [Solanum lycopersicum]
          Length = 1197

 Score = 1754 bits (4543), Expect = 0.0
 Identities = 858/1198 (71%), Positives = 990/1198 (82%)
 Frame = +2

Query: 197  MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 376
            MGSE    N+VVTQISVGG   +V A+ML +Y E  +G VWRCRLKTSSTPPDSYP Y+I
Sbjct: 1    MGSEDSDMNIVVTQISVGGFSNDVNAKMLSEYLEEQVGQVWRCRLKTSSTPPDSYPTYDI 60

Query: 377  DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 556
            D E ++R ++Y KVEPHAFVHFA   SA +AL AA R EL L  KPLKVSLGPEN  ++N
Sbjct: 61   DVEKVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENTFNMN 120

Query: 557  EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 736
            E+RRT +PYK SDV VE+GV+ S ++FVVGWRGP +GV+FLVDPFNG+CK+ FT+DTAF 
Sbjct: 121  ERRRTFMPYKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAFC 180

Query: 737  FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 916
            FKGE K AVIKCNF+IEFL REI EI   +DF SL++LLQLASSPL++YRTADDDI+ESV
Sbjct: 181  FKGEGKHAVIKCNFKIEFLLREINEINECKDFSSLVLLLQLASSPLVFYRTADDDIEESV 240

Query: 917  PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 1096
             FDLLDDDD WIRTTD T SGAIGR NTYR+S+RPR GP   KA+ Y R+ RVPV+ E  
Sbjct: 241  AFDLLDDDDQWIRTTDITFSGAIGRFNTYRVSIRPRNGPSFKKAMNYFRESRVPVV-EQG 299

Query: 1097 RHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 1276
               L V++EPDFG  + +PFFC Q  EGISFKVLFLVNAV+HKGI+NQHQM+ +FF LLR
Sbjct: 300  EQMLRVRNEPDFGESVSEPFFCFQNHEGISFKVLFLVNAVLHKGIVNQHQMTAEFFSLLR 359

Query: 1277 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 1456
               E VN  ALKH+ SYK P+ DA + L  VQKWL NNP LLER  +++D+VEVRRL+IT
Sbjct: 360  KHQEGVNLAALKHIFSYKRPVNDAIRKLASVQKWLFNNPNLLERTGQLDDVVEVRRLVIT 419

Query: 1457 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 1636
            P KAYCLPP VELSNRVLR Y++I+DRFLRVTFMDE M  LN+N LTYY   + R ITS+
Sbjct: 420  PTKAYCLPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIVREITSS 479

Query: 1637 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 1816
            SNPQRT +F+RVK I+N GFYLCGR+YSFLAFS+NQLRDRSAWFFAE     V +I NWM
Sbjct: 480  SNPQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINWM 539

Query: 1817 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 1996
            GKF NRN+AKCAARMGQCFSSTYATVEV  ++VNS+LPDIERNGYVFSDGIGMM+  L++
Sbjct: 540  GKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMTADLSI 599

Query: 1997 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 2176
            EVA KLQ+S +PPCAYQIRYAG KGV+A WP  KDG  L LR SM+KF+SNHTILEICSW
Sbjct: 600  EVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2177 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 2356
            TR QPGFLNRQI+TLLS+LEV+D +FW MQ+ M+S+LD++L D+D+AFDV+T SC + G+
Sbjct: 660  TRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGN 719

Query: 2357 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 2536
            TAAIMLSAGFKPQ+EPHLRGML SIRAAQLGDLR K R+FV SGRWLMGCLDELG LE G
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQG 779

Query: 2537 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 2716
            QCFIQVS PSLE  FVKHG  FSE +K LQVVKGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780  QCFIQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 2717 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 2896
            HHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SW+PM YA  EA++L
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQL 899

Query: 2897 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 3076
             R V+H+DII+FF KNMV ESLG ICNAHVVHADLS++GA+DEKC+KLAELAA+AVDFPK
Sbjct: 900  GRQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFPK 959

Query: 3077 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 3256
            TGK+VTMP +LKPK+YPDFMGKE  Q+Y S KILGKLYR++ D  D    ESS   +  +
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESSGLEYVPK 1019

Query: 3257 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 3436
            +I YD +LEI G + FI DAWN KCSYDGQL GLLGQYKVN EEE+VTGHIWSMPKYS+K
Sbjct: 1020 DIPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAK 1079

Query: 3437 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 3616
            KQGELKERLKHAY+ LRKEFR VFE M+P+FD L  DEKN MYE+KA AWY+VTYH  W+
Sbjct: 1080 KQGELKERLKHAYNMLRKEFRNVFEQMEPDFDLLPIDEKNDMYERKAFAWYRVTYHPHWV 1139

Query: 3617 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
             +S ELQ+ D     VMLSFAWIAADY+ARIKIR+R  +N  STKPIDSLGRYL +KI
Sbjct: 1140 TRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNFDSTKPIDSLGRYLVNKI 1197


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1750 bits (4532), Expect = 0.0
 Identities = 849/1198 (70%), Positives = 990/1198 (82%), Gaps = 7/1198 (0%)
 Frame = +2

Query: 218  KNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI-DTEGIQ 394
            K  VVTQ+S GG +K+VTA  L+ Y +N IG VWRCRLKTS TPP+SYPN+EI DT  IQ
Sbjct: 8    KETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITDTAVIQ 67

Query: 395  RKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTT 574
            R D Y +VEPHAFVHFA   SAT A +AAG  EL   G+P+KVSLGPENP HLN++RRTT
Sbjct: 68   RVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQRRRTT 127

Query: 575  IPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVK 754
            IP+KLSDV VE+G + SR+EF+VGWRGP +GVDFLVDPF+G+CK  FT+DTAFSFKG  +
Sbjct: 128  IPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFKGTTE 187

Query: 755  SAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLD 934
             AVI+C+F++EFL R+I EIK Y D   L++LLQLAS+P ++YRTADDDI+  VPFDLLD
Sbjct: 188  HAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPFDLLD 247

Query: 935  DDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLV 1114
            DDDPWIRTTDFTPSGAIGRCN+YR+S+ PR+G  L +AL +LR+RRV    +  R  L V
Sbjct: 248  DDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQE--DCLRRPLHV 305

Query: 1115 QDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEV 1294
              EP++ MPM DPFFCI ++EG+ F ++FLVNAVMHKGI NQHQ+S+ FFDLLR++P +V
Sbjct: 306  TAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQPLDV 365

Query: 1295 NTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYC 1474
            N  AL+H+CSYKHP++DA K L+ VQ+WLL NPKL    ++++DIVE+RRL ITP +AYC
Sbjct: 366  NIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTRAYC 425

Query: 1475 LPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRT 1654
            LPPEVELSNRVLR Y++IAD+FLRVTFMDE + T+N N LTYY  P+ R ITSNS  Q+T
Sbjct: 426  LPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSFSQKT 485

Query: 1655 TMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNR 1834
             +FKRVK IL +GFYLCGRKYSFLAFSSNQLRDRSAWFFAED  T V+ I+NWMGKFTNR
Sbjct: 486  RIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGKFTNR 545

Query: 1835 NIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKL 2014
            NIAKCAARMGQCFSSTYATVEVPS +    LPDIERN Y+FSDGIGM++  LA EVAEKL
Sbjct: 546  NIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKEVAEKL 605

Query: 2015 QISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPG 2194
            ++  +PPCAYQIRYAG KGV+A WP   DG  L LR SM KF SNHT LEICSWTRFQPG
Sbjct: 606  KLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRFQPG 665

Query: 2195 FLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIML 2374
            FLNRQI+TLLS L+V D IFW+MQ  MVS+L++M  D D+AFDVVT SC +QG+TAAIML
Sbjct: 666  FLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAAIML 725

Query: 2375 SAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQV 2554
            SAGF P+TEPHL GMLT IRAAQL  LREK RIFVPSGRWLMGCLDELGVLEHGQCFIQV
Sbjct: 726  SAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCFIQV 785

Query: 2555 SIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDC 2734
            S PSLE  F KHGSRFSE++KKLQVVKG V +AKNPCLHPGD+RILEAVDAPELHHLHDC
Sbjct: 786  SNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHLHDC 845

Query: 2735 LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRH 2914
            LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSW+PM Y A EA++L R V H
Sbjct: 846  LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRPVNH 905

Query: 2915 SDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPKTGKIVT 3094
             DII+FF KNMVNE+LG ICNAHVVHADLS+YGALDE CIKLAELAA AVDFPKTGK+VT
Sbjct: 906  QDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKTGKLVT 965

Query: 3095 MPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIK------DANDRGYEESSEQTFALE 3256
            MPP LKPKLYPDFMGKE+ Q+Y+SNKILG+LYR++K      D +D     SSE      
Sbjct: 966  MPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSELNLVRG 1025

Query: 3257 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 3436
            +I YD+DLE++GS  +I DAW+ KCSYDGQL GLL QYKV REEE+VTGHIWSMPK +S+
Sbjct: 1026 DIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMPKCNSR 1085

Query: 3437 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 3616
            KQGELKERLK +Y +L+KEFR+VFE MD +F+QL++DEKN++YE+KASAWYQV YH  W+
Sbjct: 1086 KQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHPKWV 1145

Query: 3617 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
             KS ELQ  D AG   MLSFAWIAADYLARIKIR R  +   ++KP++SL +YLAD+I
Sbjct: 1146 NKSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYLADRI 1203


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score = 1740 bits (4506), Expect = 0.0
 Identities = 832/1200 (69%), Positives = 996/1200 (83%), Gaps = 2/1200 (0%)
 Frame = +2

Query: 197  MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 376
            M +E   K  VVTQ+SVGG + +VTA+ L++Y + +IG+VWRCRLKTS TPP+SYPN+EI
Sbjct: 1    MEAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 377  -DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHL 553
             D   I+R +DY +V PHAFVHFA+  SAT A++A+GR EL L  K LKVSLGP+NP  L
Sbjct: 61   TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTL 120

Query: 554  NEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAF 733
            N++RRTT P+KLSDV  E+G + SR+EF VGWRGP +GVDFLVDPF+G CK  F+++TAF
Sbjct: 121  NQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAF 180

Query: 734  SFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKES 913
            S K   + AVIKC+F++EFL R+I EI  Y +   L++LLQLAS+P ++YRTADDDI+  
Sbjct: 181  SLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAW 240

Query: 914  VPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYE- 1090
            VPFDLLDDDDPWIRTTDFT SGAIGRC++YR+S+ PR+G  L KA++YL++RRV V+ E 
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEE 300

Query: 1091 SPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDL 1270
            + R R+ + DEPDFGMPM DPFFCI +KEGI+F+VLFLVNAVMHKGI NQHQ+S  FFDL
Sbjct: 301  NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDL 360

Query: 1271 LRSRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLI 1450
            LR++  EVN  ALKH+C+Y+ P+++A++ L+ VQ+WLL NP L + P+++ D+VE+RRL+
Sbjct: 361  LRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLV 420

Query: 1451 ITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGIT 1630
            ITP KAYCLPPEVELSNRVLR Y+++ADRFLRVTFMDE +  +N NVL YYV P+ R IT
Sbjct: 421  ITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDIT 480

Query: 1631 SNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKN 1810
            SNS PQ+T +FKRV+ IL  GFYLCGR+YSFLAFS+NQLRD+SAWFF+E++N  V ++K+
Sbjct: 481  SNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKS 540

Query: 1811 WMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSL 1990
            WMGKFTNRNIAKCAARMGQCFSSTYAT+EVP  +VNS LPDIERNGYVFSDGIG+++  L
Sbjct: 541  WMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDL 600

Query: 1991 AVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEIC 2170
            A EVAEKL++  DPPCAYQIRYAG KGV+A WP   DG  L LR SM KF+SNHT LEIC
Sbjct: 601  AREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEIC 660

Query: 2171 SWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQ 2350
            SWTRFQPGFLNRQI+TLLS L V D +FW+MQETMVS+L++M  ++D+AFDV+T SC DQ
Sbjct: 661  SWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQ 720

Query: 2351 GSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLE 2530
            G+ AAIMLSAGFKP  EPHLRGMLT +RAAQL DLREK RIFVPSGRWLMGCLDELG+LE
Sbjct: 721  GNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLE 780

Query: 2531 HGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAP 2710
             GQCFIQVS  SLE+ F+KHG++FSE EK LQV+KG V IAKNPCLHPGDVR+LEAVD P
Sbjct: 781  QGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVP 840

Query: 2711 ELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAR 2890
             LHHL+DCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPM Y A EA+
Sbjct: 841  GLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAK 900

Query: 2891 ELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDF 3070
             L R V H DIIEFF KNMVN++LG ICNAHVVHADLS+YGA D+ C+ LAELAA AVDF
Sbjct: 901  LLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDF 960

Query: 3071 PKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFA 3250
            PKTGK+V+MPP LKPK+YPDFMGKEE Q+Y S KILG+LYR+IKDA D     SSE    
Sbjct: 961  PKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLV 1020

Query: 3251 LENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYS 3430
              +I YD DLE+ G+  +I+DAW+ KCSYDGQL GLL QYKV REEE+VTGHIWSMPKYS
Sbjct: 1021 PGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYS 1080

Query: 3431 SKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHES 3610
            S+KQGELK+RLKH+Y++L+KEFR++FE MD EF+QL D EKN +YE+KASAWYQV YH  
Sbjct: 1081 SRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPH 1140

Query: 3611 WLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
            W+KKS ELQ  D AG +VMLSFAWIAADYLARIKIR R T N  S KP++SL +YLAD++
Sbjct: 1141 WVKKSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRM 1200


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score = 1734 bits (4491), Expect = 0.0
 Identities = 839/1200 (69%), Positives = 989/1200 (82%), Gaps = 2/1200 (0%)
 Frame = +2

Query: 197  MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 376
            M +E   K  VVTQ+S+GG + +VTA+ L++Y E  IG+VWRCRLKTS TPP+SYPN+EI
Sbjct: 1    METEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 377  -DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHL 553
             D   I R +DY +VEPHAFVHFA+  SAT A+DAA R EL L  K LK SLGPENP  L
Sbjct: 61   TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120

Query: 554  NEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAF 733
            N++RR T P+KLS V VE+G + SR+EF VGWRGP TGVDFLVDPF+G C+  F+++TAF
Sbjct: 121  NQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180

Query: 734  SFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKES 913
            SFK   + AVIKC+F++EFL R+I EIK Y +   L++LLQLAS+P ++YRTADDDI+ S
Sbjct: 181  SFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVS 240

Query: 914  VPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYES 1093
            VPFDLLDDDDPWIRTTDFT SGAIGRC++YR+S+ PR+GP L KA+++L++RRV   Y  
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYL- 299

Query: 1094 PRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLL 1273
             R  + ++DEPDFGMPM DPFFCI +KEGI+F VLFLVNAVMHKGI NQHQ+S  FFDLL
Sbjct: 300  -RRPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLL 358

Query: 1274 RSRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLII 1453
            R++P EVN  ALKH+  Y+ P++DA+K L++ Q+WLL NPK  +  ++++DI E+RRL+I
Sbjct: 359  RNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVI 418

Query: 1454 TPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITS 1633
            TP KAYCLPPEVELSNRVLR Y+++ADRFLRVTFMDE + T+N N L Y+  P+ R ITS
Sbjct: 419  TPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITS 478

Query: 1634 NSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNW 1813
             S PQ+T +FKRV+ IL  GFYLCGR+YSFLAFSSNQLRDRSAWFFAED+N  V  IK+W
Sbjct: 479  YSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSW 538

Query: 1814 MGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLA 1993
            MGKFTN+NIAKCAARMGQCFSSTYAT+EVP  +VNS LPDI+RNGY FSDGIGM++  LA
Sbjct: 539  MGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLA 598

Query: 1994 VEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICS 2173
             EVAEKL+   DPPCAYQIRYAG KGV+A WP   DG  L LR+SM KF+SNHTILEICS
Sbjct: 599  REVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICS 658

Query: 2174 WTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQG 2353
            WTRFQPGFLNRQI+TLLSAL V D +FW+MQE MVS+L++ML D+D+AFDV+T SC +QG
Sbjct: 659  WTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQG 718

Query: 2354 STAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEH 2533
            + AAIMLSAGFKPQ EPHLRGMLT +RAAQL  LREKARIFVPSGRWLMGCLDELGVLE 
Sbjct: 719  NVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQ 778

Query: 2534 GQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPE 2713
            GQCFIQVS   LE  FVKHGS+FSE +K LQVVKG V IAKNPCLHPGD+RILEAVDAP 
Sbjct: 779  GQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPG 838

Query: 2714 LHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEARE 2893
            LHHL+DCLVFPQKG+RPH NEASGSDLDGDLYFVTWDENLIPPSKRSWIPM Y A EA++
Sbjct: 839  LHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQ 898

Query: 2894 LPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFP 3073
            L R V H DI+EFF KNM NE+LG ICNAHVV ADLS+YGALDEKC+ LAELAA AVDFP
Sbjct: 899  LTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFP 958

Query: 3074 KTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDA-NDRGYEESSEQTFA 3250
            KTGKIV+MP +LKPK+YPDFMGKEE Q+Y S KILG+LYR+IKDA +D     SSE  F 
Sbjct: 959  KTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFV 1018

Query: 3251 LENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYS 3430
              +I YD DLE+ G+  FI+DAW+ KCSYDGQL GLL QYKV REEE+VTGH+WSMPK S
Sbjct: 1019 RGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGS 1078

Query: 3431 SKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHES 3610
            S+KQG+LKERLKH+Y+ L++EFR+VFE MD +F QL DDEKN++YE+KASAWYQVTYH  
Sbjct: 1079 SRKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPH 1138

Query: 3611 WLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
            W++KS ELQ  D AG +VMLSFAWIAADYLARIKIR  R  N  S KP++SL +YLAD++
Sbjct: 1139 WIQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198


>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
          Length = 1197

 Score = 1717 bits (4448), Expect = 0.0
 Identities = 834/1199 (69%), Positives = 982/1199 (81%), Gaps = 1/1199 (0%)
 Frame = +2

Query: 197  MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 376
            M S+   K+ VVTQ+SVGG  ++V A+ LM+YF+N +G+VWRCRLKTS TPP+SYPN+EI
Sbjct: 1    MESQGSEKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEI 60

Query: 377  -DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHL 553
             D+  IQR DDY+KVEPHAFVHFA   +AT A+DAAGR EL+   + LKVSLGPENP++L
Sbjct: 61   LDSTVIQRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYL 120

Query: 554  NEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAF 733
            N +RR T P+KLSDV +++G M SR+EF VGWRGP  GVDFLVDPF+G CK  F++DTAF
Sbjct: 121  NRRRRNTTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAF 180

Query: 734  SFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKES 913
            SFKG  + AVIKC+F++EFL R+I EIK Y +   L+V LQLASSP ++YRTADD+I+ES
Sbjct: 181  SFKGTTEYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEES 240

Query: 914  VPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYES 1093
            VPFDLLDDDD WIRTTDFTPSGAIGRCNTYR+ +RPR+G  L KAL+YLR++RVP+ Y  
Sbjct: 241  VPFDLLDDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYV- 299

Query: 1094 PRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLL 1273
             R  L + DEPDFG  M DPF+CI YKEGI F+++FLVNAVMHKGI NQHQ+SE FF+LL
Sbjct: 300  -RWPLRISDEPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLL 358

Query: 1274 RSRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLII 1453
            R +P EVN  ALKH+ SY+ P++DA+K L+ V  WLL NP L + P++++DIVE+RRL+I
Sbjct: 359  RDQPREVNVAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVI 418

Query: 1454 TPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITS 1633
            TP KA+CL PEVELSNRVLR Y+ +ADRFLRVTFMDE M T+N NVLTYY   + R +TS
Sbjct: 419  TPTKAHCLLPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTS 478

Query: 1634 NSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNW 1813
                Q+T +FKRV+ IL +GFYLCGRKYSFLAFS+NQLRD SAWFFAED  T V  I  W
Sbjct: 479  TFFSQKTGVFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQILRW 538

Query: 1814 MGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLA 1993
            MGKFTNRNIAKCAARMGQCFSSTYATVEVPST+VN  LPDIERNGYVFSDGIG ++  LA
Sbjct: 539  MGKFTNRNIAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLA 598

Query: 1994 VEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICS 2173
             EVA+KL++  +PPCAYQIRYAG KGV+A WP   DG  L LR SM KF S+HT LEICS
Sbjct: 599  KEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEICS 658

Query: 2174 WTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQG 2353
            WTRFQPGFLNRQI+TLLS   V D +FW MQ TMVS+L+++L DTD+AF+V+T SC++QG
Sbjct: 659  WTRFQPGFLNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQG 718

Query: 2354 STAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEH 2533
            + AAIMLSAGFKPQTEPHLRG+LT +RA+QL  LREKARIFVPSGRWLMG LDELGVLE 
Sbjct: 719  NAAAIMLSAGFKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQ 778

Query: 2534 GQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPE 2713
            GQCFIQVS PS+E  F+KHGSRF+E +K  +V++GLV IAKNPCLHPGD+RILEAVDAP 
Sbjct: 779  GQCFIQVSNPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPG 838

Query: 2714 LHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEARE 2893
            LHHL+DCLVFPQKG+RPHTNEASGSDLDGDLYFVTW++ LIPP K+SW PM Y  GE +E
Sbjct: 839  LHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGETKE 898

Query: 2894 LPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFP 3073
            + R+V H DII+FF KNMVNE LGTICNAHVVHADLS+YGALDEKCI LAELAA AVDFP
Sbjct: 899  IQREVNHKDIIDFFAKNMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVDFP 958

Query: 3074 KTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFAL 3253
            KTGKIV+MP  LKPKLYPDFMGKEE Q+Y S KILG+LYR IKD  D    ESSE     
Sbjct: 959  KTGKIVSMPANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDVYDEDLSESSEINLDS 1018

Query: 3254 ENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSS 3433
             +I YD DLE+TGS  +I DAW  KCSYD QLIGLLGQYKV REEE+VTGHIWSMPKY+S
Sbjct: 1019 PDINYDTDLEVTGSADYIDDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPKYTS 1078

Query: 3434 KKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESW 3613
            +K G+LKE+L H+Y  LRKEFR++FESMD E +QL++DE+N +YE+KASAWYQVTYH  W
Sbjct: 1079 RKLGDLKEKLGHSYGALRKEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYHPKW 1138

Query: 3614 LKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
            ++K  ELQ  D A   VMLSFAWIAADYLARIKIR + T N   +KP++SL +YLADKI
Sbjct: 1139 VEKKLELQKSDGADPVVMLSFAWIAADYLARIKIRSQGTGNVDFSKPVNSLVKYLADKI 1197


>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score = 1675 bits (4337), Expect = 0.0
 Identities = 812/1191 (68%), Positives = 965/1191 (81%), Gaps = 3/1191 (0%)
 Frame = +2

Query: 227  VVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEIDTEGIQRKDD 406
            VVTQ+S GG + +  A+ L+ Y E+ IG+V+RCRLKTS TPP+S+PN+EI+T  ++R DD
Sbjct: 11   VVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEINTADVKRTDD 70

Query: 407  YEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPYK 586
            Y +VEPHAFVHF    S T A+DAAGR EL    +PLKVSLGPENP+ LN +RRT  P+K
Sbjct: 71   YSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLNRRRRTKTPFK 130

Query: 587  LSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAVI 766
            LSDV VE+G +  ++EF   WRGP  GVDF+VDPF+G CK  FT DTAFSFKG  K AVI
Sbjct: 131  LSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSFKGTKKHAVI 190

Query: 767  KCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDDP 946
            KC+F++EFL REI EIK Y D   L++LL+L SSP + YRTADDDI +SVPFDLLDDDDP
Sbjct: 191  KCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSVPFDLLDDDDP 250

Query: 947  WIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVP--VIYESPRHRLLVQD 1120
            WIRTTDFTPSGAIGRCN+YR+ + PR+G  L KA+ YLR+RRV    I   P+    +QD
Sbjct: 251  WIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPPK----IQD 306

Query: 1121 EPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNT 1300
            EPDFGM   +PFF IQY+EGISF+++FLVNAVMHKG +NQHQ+S+ FF LLRS+P+E+N 
Sbjct: 307  EPDFGMSNTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQPKEINV 366

Query: 1301 VALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLP 1480
             ALKH+CSY+ P++DA + L++VQ WLL NPKL++ P+ ++DI EVRRL+ITP KAYCLP
Sbjct: 367  AALKHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITPTKAYCLP 426

Query: 1481 PEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTM 1660
            PEVELSNRVLR Y+ +ADRFLRVTFMDE M  +N NVL YYV P+ + ITSNS  Q+T +
Sbjct: 427  PEVELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSFLQKTNV 486

Query: 1661 FKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNI 1840
            FKR + ILN+GFYLCGRKY+FLAFSSNQLRDRSAWFFAE  N  V  I +WMGKF N+N+
Sbjct: 487  FKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGKITSWMGKFNNKNV 546

Query: 1841 AKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQI 2020
            AKCAARMGQCFSSTYATVEV S++VN  +PDI+RNGYVFSDGIGM++  LA+EVAEKL++
Sbjct: 547  AKCAARMGQCFSSTYATVEVTSSEVND-IPDIKRNGYVFSDGIGMITPDLALEVAEKLKL 605

Query: 2021 STDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFL 2200
              +PPCAYQIR+AG KGV+A WP+  DG  L LRTSM KFES HT LEICSWTR+QPGFL
Sbjct: 606  DRNPPCAYQIRFAGCKGVVACWPSKGDGFRLSLRTSMNKFESKHTTLEICSWTRYQPGFL 665

Query: 2201 NRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSA 2380
            NRQI+TLLS L VED IFWRMQE MV +L++ML DTD+AFDV+T SC +QG+ AAIMLSA
Sbjct: 666  NRQIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASCAEQGNAAAIMLSA 725

Query: 2381 GFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSI 2560
            GFKPQTEPHLRGMLT I+AAQL  LREKARIFV SGRWLMG LDELGVLE GQCF+QVS 
Sbjct: 726  GFKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLEQGQCFVQVST 785

Query: 2561 PSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLV 2740
            P LE  F KHGS F++ E+ LQV+KG V IAKNPCLHPGD+RILEAVDAP LHHL+DCLV
Sbjct: 786  PLLESCFAKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLV 845

Query: 2741 FPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSD 2920
            FPQKGDRPHT+EASGSDLDGDLYFVTWDENLIPPSK+SW+PM Y   EA+   R V   D
Sbjct: 846  FPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKLQGRPVTQQD 905

Query: 2921 IIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPKTGKIVTMP 3100
            II+FF KNM NE+LG ICNAHVVHAD SDYGALD  C+KLAELAA+AVDFPKTGKIV++P
Sbjct: 906  IIDFFVKNMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAALAVDFPKTGKIVSLP 965

Query: 3101 PELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDL 3280
              LKP+LYPDF+GKE+ Q+Y S KILG+LYRK++DA D     SSE  +   +I YD DL
Sbjct: 966  QHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATSSELHYFPSDIPYDMDL 1025

Query: 3281 EITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKER 3460
            E+ G+  F+ DAW  KCSYDGQL GL+GQYKV REEE+VTGH+WS+PK +SKKQGELKER
Sbjct: 1026 EVPGAADFVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNSKKQGELKER 1085

Query: 3461 LKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQM 3640
            L H+Y+ L+KEFR++FE++D   + L+DDEKN++ EKKASAWYQVTYH  W+K+S  LQ 
Sbjct: 1086 LSHSYNALKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQVTYHPKWVKQSPPLQE 1145

Query: 3641 VDDAGK-TVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
             D  G   VMLSFAWIAADYLARIKI+    E+  STKPI+SL RYLAD+I
Sbjct: 1146 PDGPGDVVVMLSFAWIAADYLARIKIKCHGVEHIDSTKPINSLKRYLADRI 1196


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score = 1675 bits (4337), Expect = 0.0
 Identities = 825/1198 (68%), Positives = 972/1198 (81%), Gaps = 3/1198 (0%)
 Frame = +2

Query: 206  EIDG--KNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI- 376
            E++G  K  VVTQ+SVGG +++V A  LM Y EN +G+VWRCRLKTS TPP+SYPN+EI 
Sbjct: 2    ELEGSVKETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEIT 61

Query: 377  DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 556
            DT  IQRKD+Y+KVEPHAFVHFA   + T A+DAAGR EL    + LKVSLGPENP++LN
Sbjct: 62   DTTVIQRKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLN 121

Query: 557  EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 736
             +RR T P+KL DV +E+G + S +EF+VGWRGP +GV+FLVDPF+  CK  F++DTAFS
Sbjct: 122  RRRRDTTPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFS 181

Query: 737  FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 916
            FKG  + AVIKC+F++EFL REI E+K Y +    +VLLQLASSP ++YRTADDD +++V
Sbjct: 182  FKGTNEHAVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKTV 241

Query: 917  PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 1096
            PF LLDDDD WIRTTDFT SGAIGRCNTYR+ VRPR+G  L KA++YLR+RRVPV  E  
Sbjct: 242  PFGLLDDDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPV--EDL 299

Query: 1097 RHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 1276
            R +L ++DEPDFG  M D F+ I YKEGI F+++FLVNAV+HKGI NQHQ+S  FF LLR
Sbjct: 300  RSQLRIRDEPDFGRSMSDHFYYI-YKEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLR 358

Query: 1277 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 1456
            ++  EVN  ALKH+ SY+HP+YDA++ L+ V  WLL NPKL + P +++DIVE+RRL+IT
Sbjct: 359  NQSMEVNVAALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVIT 418

Query: 1457 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 1636
            P KAYCL PEVELSNRVLR Y+++ADRFLRVTFMDE M  +N NVLTYY   + R +TS 
Sbjct: 419  PTKAYCLLPEVELSNRVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTST 478

Query: 1637 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 1816
            S  Q+T +FKRVK IL +GFYLCGRKYSFLAFS+NQLRDR+AWFFAED    V  I  WM
Sbjct: 479  SFSQKTGVFKRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQIIGWM 538

Query: 1817 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 1996
            GKFTNRNIAKCAARMGQCFSSTYATVEVPS QVN  LPDI+RNGY FSDGIG ++  LA+
Sbjct: 539  GKFTNRNIAKCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKITPDLAM 598

Query: 1997 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 2176
            EVA+KL++  +PPCAYQIRYAG KGV+A WP   D   L LR+SM KF S+HT LEICSW
Sbjct: 599  EVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDRIRLSLRSSMIKFFSHHTTLEICSW 658

Query: 2177 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 2356
            TRFQPGFLNRQI+TLLS L V D +FW MQ +MVS+LD++L DTD AF+VV  SC +QG 
Sbjct: 659  TRFQPGFLNRQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVVISSCGEQGH 718

Query: 2357 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 2536
            T AIMLSAGFKPQTEPHLRGMLT +RA+QL  LREK+RIF+ SGRWLMG LDELGVLE G
Sbjct: 719  TPAIMLSAGFKPQTEPHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELGVLEQG 778

Query: 2537 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 2716
            QCFIQVS PSL+  F+KHGSRF+E +K  +V+KGLV IAKNPCLHPGD+RILEAVDAP L
Sbjct: 779  QCFIQVSNPSLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAVDAPGL 838

Query: 2717 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 2896
            HHL+DCLVFPQKG+RPHTNEASGSDLDGDLYFVTW+E LIPPSK+S  PM Y     REL
Sbjct: 839  HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDLDAPREL 898

Query: 2897 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 3076
             R V H DIIEFF+KNMVNE LG+ICNAHVVH+DLS++GA DEKCI LAELAAIAVDFPK
Sbjct: 899  NRSVTHKDIIEFFSKNMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIAVDFPK 958

Query: 3077 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 3256
            TGKIV+MP +LKPKLYPDFMGKEE Q+Y SNKILG+LYR IKDA D+   ESSE  F   
Sbjct: 959  TGKIVSMPAQLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVSESSELNFGAS 1018

Query: 3257 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 3436
            +I YD DLEITGS  +I DAW  KCSYDGQLIGLL QYKV REEE+VTG IWSMPKY+SK
Sbjct: 1019 DINYDADLEITGSADYITDAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPKYASK 1078

Query: 3437 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 3616
            K G+LKE+L H+Y +LRKEFR++FE+MD EF+QL++DEKN +YE+KASAWYQVTYH  W+
Sbjct: 1079 KLGDLKEKLGHSYGSLRKEFRQLFENMDSEFEQLNEDEKNKLYERKASAWYQVTYHPEWV 1138

Query: 3617 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
            +K  E Q  D     VMLSFAWIAADYLARIK+R + TEN    KP++SL RYLAD+I
Sbjct: 1139 QKKLEFQKPDGDEGVVMLSFAWIAADYLARIKVRHQGTENLDFAKPVNSLVRYLADRI 1196


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score = 1674 bits (4335), Expect = 0.0
 Identities = 809/1189 (68%), Positives = 952/1189 (80%), Gaps = 1/1189 (0%)
 Frame = +2

Query: 227  VVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI-DTEGIQRKD 403
            VVTQ+S GG   +VTA+ L+ Y E+ IG+V+RCRLKTS TPP+S PN+EI D   I+  D
Sbjct: 11   VVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEISDAADIETTD 70

Query: 404  DYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTIPY 583
            DY KVEPHAFVHFA   S T+ +DA GR +L    + LK SLGPEN  ++N++RRT IP+
Sbjct: 71   DYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNMNKRRRTKIPF 130

Query: 584  KLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKSAV 763
            KL+DV +E+G +   +EF V W+GP  GVDF+VDPF+G CK  F +DTAFSFKG  K AV
Sbjct: 131  KLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAFSFKGLNKHAV 190

Query: 764  IKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDDDD 943
            I C+F+ EF  REI E KHY +    ++LL+L SSP + YRTADDDI +SV FDLLDDDD
Sbjct: 191  ITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQSVLFDLLDDDD 250

Query: 944  PWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQDE 1123
            PWIRTTDFTP+GAIGRCN YR+ + PR+G  L KA+ YL++RRV  ++     R  +QDE
Sbjct: 251  PWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIKKPPR--IQDE 308

Query: 1124 PDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTV 1303
            P FG PM D  F I Y++ ISF +LFLVNAVMHKGI+NQHQ+SE FFDLLR++PEE+N  
Sbjct: 309  PGFGNPMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLRNQPEEINVA 368

Query: 1304 ALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCLPP 1483
            ALKH+CSYKHP++DA K L+LVQ+WLL NPKL++ P+ ++DI EVRRL+ITP KAYCLPP
Sbjct: 369  ALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPTKAYCLPP 428

Query: 1484 EVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTTMF 1663
            EVELSNRVLR Y+ +ADRFLRVTFMDE M T+N NV+  YV P+ + IT N+ PQ+T ++
Sbjct: 429  EVELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITENTFPQKTKVY 488

Query: 1664 KRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIA 1843
             R++ IL NGF+LCGRKYSFLAFSSNQLRDRSAWFFAEDK   +  IKNWMG+FTNRN+A
Sbjct: 489  VRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQGIKNWMGRFTNRNVA 548

Query: 1844 KCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQIS 2023
            KCAARMGQCFSSTYATVEVPSTQVN +LPDIERNGYVFSDGIG ++  LA+EVAEKL++ 
Sbjct: 549  KCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVAEKLKLD 608

Query: 2024 TDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPGFLN 2203
             DPP AYQIRY G KGV+A WP+  DG  L LR SM KF S+HT LEICSWTR QPGFLN
Sbjct: 609  RDPPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTLEICSWTRLQPGFLN 668

Query: 2204 RQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAG 2383
            RQI+TLLSAL V D IFW MQETMVS+L +ML DTD+AFDV+T SC +QG++AAIMLSAG
Sbjct: 669  RQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQGNSAAIMLSAG 728

Query: 2384 FKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIP 2563
            FKPQTEPHLRGMLT I+AAQL  LREK RIFVPSGRWLMGCLDELGVLE GQCF+QVS P
Sbjct: 729  FKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQCFVQVSTP 788

Query: 2564 SLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVF 2743
            SLE  F KHGSRF + +K LQV+KG V +AKNPCLHPGD+RILEAVDAP LHHLHDCLVF
Sbjct: 789  SLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPGLHHLHDCLVF 848

Query: 2744 PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRHSDI 2923
            PQKG RPHT+EASGSDLDGDLYFVTWDENLIPP K+SW PM+Y   EA+   R V   D+
Sbjct: 849  PQKGHRPHTDEASGSDLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEAKLSGRSVTSQDL 908

Query: 2924 IEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPKTGKIVTMPP 3103
            IEFF +NMVNE+LG ICNAHVVH+D S+YGA DE C+KLAELAA+AVDFPKTGKIVTMPP
Sbjct: 909  IEFFVRNMVNENLGAICNAHVVHSDRSEYGAFDENCLKLAELAAVAVDFPKTGKIVTMPP 968

Query: 3104 ELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQDLE 3283
             LKPKLYPDFMGK++ Q+Y SNKILG+LYRKI DA D     SSEQ     ++ YD DLE
Sbjct: 969  HLKPKLYPDFMGKQDYQSYKSNKILGRLYRKICDAYDEDVANSSEQNHVPSDVKYDMDLE 1028

Query: 3284 ITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERL 3463
            +  +  FIADAW  KCSYD QL GL+ QYK+ REEE+VTGH+WSMPKY+S+KQGEL+ERL
Sbjct: 1029 VPKAADFIADAWERKCSYDSQLRGLMTQYKIMREEEIVTGHVWSMPKYTSRKQGELQERL 1088

Query: 3464 KHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMV 3643
            KH+YS L+KEFR+ FE MD  F+ L DD+KN  YE+KASAWYQVTYH  W+KKS +L   
Sbjct: 1089 KHSYSALKKEFRQFFEKMDTGFESLIDDQKNSFYEQKASAWYQVTYHPDWVKKSLDLHGP 1148

Query: 3644 DDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
            D  G  VMLSFAWIAADYLARIKI+RR   N    KPI+ L +YLAD+I
Sbjct: 1149 DGPGDVVMLSFAWIAADYLARIKIKRREVSNIDPKKPINILTKYLADRI 1197


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score = 1670 bits (4326), Expect = 0.0
 Identities = 816/1193 (68%), Positives = 971/1193 (81%), Gaps = 2/1193 (0%)
 Frame = +2

Query: 218  KNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI-DTEGIQ 394
            K +V  Q+S GG ++NV A  L+ Y EN +G VWRCRLKTS TP +SYP++ + +T  ++
Sbjct: 8    KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNTAEVR 67

Query: 395  RKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTT 574
            + DDYEKVEPHAFVHFA+    T A+DAAGR EL L G+ LKVSLGPENP  LN++ RT+
Sbjct: 68   KTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTS 127

Query: 575  IPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVK 754
             P+KL DV VE+G + SR+EF V WRGP +G DFLVDPF+G CK  FT+D AF+ K   +
Sbjct: 128  TPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTE 187

Query: 755  SAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLD 934
             AVIKC F++EFL REI  +K Y +F  + +LLQLASSP ++YRTADDDI   VPFD+LD
Sbjct: 188  HAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLD 247

Query: 935  DDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLV 1114
            DDDPWIRTTDFTPSGAIGRCN+YRIS+  R+   L+K + YL +RRV V  +S    + +
Sbjct: 248  DDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQV--DSLSRPITI 305

Query: 1115 QDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEV 1294
            ++EPDF +PM DPFFCI Y+EGISF+++FLVNAVMHKGIINQHQ+S+ FFDLLR +  EV
Sbjct: 306  REEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREV 365

Query: 1295 NTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYC 1474
            N  ALKH+ SYK P++DA K L+LVQ+WLL +P+L + P++++DIVEVRRL+ITP KAYC
Sbjct: 366  NVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYC 425

Query: 1475 LPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRT 1654
            LPPEVELSNRVLR Y+++ADRFLRVTFMDE + T+N NVL+Y++ P+ R IT NS  Q+T
Sbjct: 426  LPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKT 485

Query: 1655 TMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNR 1834
             +FKRV+ IL+ GFYLCGRK+SFLAFSS+QLRD SAWFF+ED  T V +IK WMG+FT++
Sbjct: 486  RVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDK 545

Query: 1835 NIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKL 2014
            NIAKCAARMGQCFSSTYATVEVP T+V+ +LPDI+RNGYVFSDGIG ++  LA+EVA+KL
Sbjct: 546  NIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKL 605

Query: 2015 QISTDPP-CAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQP 2191
            ++  +PP CAYQIRYAG KGV+A WP   DG  + LR SM KF+S+HT LEICSWTRFQP
Sbjct: 606  KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQP 665

Query: 2192 GFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIM 2371
            GFLNRQI+TLLS L V D +FW MQ++M+S+L++ML D+D+AF+V+T +C +QG+TAAIM
Sbjct: 666  GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIM 725

Query: 2372 LSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQ 2551
            LSAGF PQTEPHLRGMLT IRAAQL  LREKARIFVP+GRWLMGCLDELGVLE GQCFIQ
Sbjct: 726  LSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQ 785

Query: 2552 VSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHD 2731
            VS P L   F KHGSRF+E  KKLQV+KG V IAKNPCLHPGD+RILEAVD PELHHL+D
Sbjct: 786  VSEPFLGNCFSKHGSRFAET-KKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYD 844

Query: 2732 CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVR 2911
            CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSK+SW PM+Y A EA+ L R V 
Sbjct: 845  CLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVD 904

Query: 2912 HSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPKTGKIV 3091
              DIIEFF K+MVNE+LGTICNAHVVHAD S+YGALDE CI LAELAA AVDFPKTGKIV
Sbjct: 905  QRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIV 964

Query: 3092 TMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYD 3271
            TMP  LKPKLYPDFMGKE  Q+Y SNKILG+LYR+ KDA D     SSE      +I YD
Sbjct: 965  TMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYD 1024

Query: 3272 QDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGEL 3451
             DLE+  S  FIADAWN KCSYDGQL GLL QYKVNREEELVTGHIWSMPKY+S+KQGEL
Sbjct: 1025 TDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGEL 1084

Query: 3452 KERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKE 3631
            KERLKH+YS LRKEFR+VFE MD + + LS+DEKN ++E+KASAWYQVTYH  W+KKS +
Sbjct: 1085 KERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLD 1144

Query: 3632 LQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
            LQ  D A   V+LSFAWIA DYLARIKIR R   N  ++KP++ L RY+AD+I
Sbjct: 1145 LQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197


>gb|EPS62146.1| hypothetical protein M569_12646, partial [Genlisea aurea]
          Length = 1195

 Score = 1669 bits (4322), Expect = 0.0
 Identities = 823/1199 (68%), Positives = 960/1199 (80%), Gaps = 8/1199 (0%)
 Frame = +2

Query: 218  KNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEIDTEGIQR 397
            ++ VVTQISV G+E +VTA+ML+D+F+ +IG VWRCRLKTSS PPDSYPNY+ID   +Q 
Sbjct: 2    EDSVVTQISVAGIEDHVTAKMLVDFFQKNIGFVWRCRLKTSSLPPDSYPNYDIDISRVQG 61

Query: 398  KDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTTI 577
             +DYE+ + HA+VHFA+   A  A DAA  G L +  K L+V LGP+NPH +NE+RRT  
Sbjct: 62   NNDYERAKRHAYVHFAIPKCAKLAADAAASGRLTMGQKQLRVGLGPQNPHRMNERRRTIS 121

Query: 578  PYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVKS 757
             YKL DV VEVG M+S+ EF VGWRGP +GVDF+VDP+NG CK+QF +DTAFS   E + 
Sbjct: 122  SYKLFDVSVEVGSMKSQNEFYVGWRGPSSGVDFIVDPYNGTCKIQFERDTAFSITDEDRL 181

Query: 758  AVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLDD 937
             V+KCNF+IEF PREIIEIK YRDF SLI++LQL SSPLIYYRTADDDI+++VPFDLL+D
Sbjct: 182  VVMKCNFKIEFTPREIIEIKRYRDFYSLIIMLQLFSSPLIYYRTADDDIEDAVPFDLLED 241

Query: 938  DDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLVQ 1117
            DDPWIRTTDFT +GAIGRCNTYRISVRP  GP L KAL+YLR RRV V  E     + V 
Sbjct: 242  DDPWIRTTDFTSTGAIGRCNTYRISVRPLSGPQLLKALDYLRLRRVKVFDEFKGKHIRVM 301

Query: 1118 DEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEVN 1297
            DEP FG  M DPFFCIQ  +G+SFK+ FLVNAV+H GIIN HQM+E+FFDLLR++PEE+ 
Sbjct: 302  DEPGFGTLMSDPFFCIQNVKGLSFKITFLVNAVLHSGIINYHQMTEEFFDLLRTQPEELI 361

Query: 1298 TVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYCL 1477
              AL H+   K P+YDA KAL+ VQKWLL NPKLLERP    D VEVRRLIITP +AYC+
Sbjct: 362  VPALTHLSFSKRPVYDAVKALKAVQKWLLGNPKLLERPMRNEDTVEVRRLIITPTRAYCI 421

Query: 1478 PPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRTT 1657
            PPEVELSNRVLRNYR+++DRFLRVTFMDEAM  LNKN+L +Y   + R   SN  PQ+T 
Sbjct: 422  PPEVELSNRVLRNYRDLSDRFLRVTFMDEAMQILNKNLLVFYPDRILREDNSNLIPQKTM 481

Query: 1658 MFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNRN 1837
            MFKR+KDIL +GFYLCG KYSFLA+S+ QLRDRSAWFFAED    V NIK WMGKFT+RN
Sbjct: 482  MFKRIKDILMDGFYLCGMKYSFLAYSAGQLRDRSAWFFAEDSKIKVKNIKKWMGKFTDRN 541

Query: 1838 IAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKLQ 2017
            +AKCAARMGQCFSSTYATVEVP   VN KL +++RNGYVFSDGIG +S  LA EVA+KLQ
Sbjct: 542  VAKCAARMGQCFSSTYATVEVPHGDVNFKLLEVKRNGYVFSDGIGTISPELASEVAKKLQ 601

Query: 2018 ISTDPPCAYQIRYAGYKGVIARWPNIKDG-THLHLRTSMRKFESNHTILEICSWTRFQPG 2194
            +S DPP AYQIRY GYKGVIA WP +KDG + L LR SM+KFES H +LEICSWT+F PG
Sbjct: 602  LSADPPSAYQIRYGGYKGVIACWP-VKDGESRLSLRRSMKKFESEHAVLEICSWTKFLPG 660

Query: 2195 FLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIML 2374
            FLNRQI+TLL+AL V D IFW MQETM+ +L+RM+ D  +AFDV+T SC + GSTAA+ML
Sbjct: 661  FLNRQIITLLTALGVPDDIFWNMQETMIQKLNRMIGDAKIAFDVLTNSCAESGSTAAVML 720

Query: 2375 SAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQV 2554
            SAGF+PQTEPHLRGML+SIRAAQ GDLREK RIFV SGRWLMGCLDE GVLE GQCFIQ 
Sbjct: 721  SAGFRPQTEPHLRGMLSSIRAAQFGDLREKTRIFVSSGRWLMGCLDEAGVLEQGQCFIQA 780

Query: 2555 SIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDC 2734
            S  SL   FVKHGS FSE  K L+V++GLV +AKNPCLHPGD+RILEAVDAPEL HLHDC
Sbjct: 781  SSFSLLNCFVKHGSSFSEISKSLKVIEGLVVVAKNPCLHPGDIRILEAVDAPELRHLHDC 840

Query: 2735 LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRH 2914
            LVFP+KG+RPHT+EASGSDLDGD+YFVTWDENLIPPSK+SW PM+Y +   REL R V H
Sbjct: 841  LVFPKKGERPHTDEASGSDLDGDVYFVTWDENLIPPSKQSWPPMEYQSVPVRELSRQVTH 900

Query: 2915 SDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPKTGKIVT 3094
             DI+EFF++NMVN++LGTICNAHVVH+DLS  GALDEKC+KLAELAA+AVDFPK G+ V 
Sbjct: 901  LDIVEFFSRNMVNDNLGTICNAHVVHSDLSQLGALDEKCLKLAELAALAVDFPKNGRAVN 960

Query: 3095 MPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALENITYDQ 3274
            MPPEL+P LYPDFMGKEE QTY S+KILGKLYRKI D      E   E    +  +  D 
Sbjct: 961  MPPELRPALYPDFMGKEEFQTYKSSKILGKLYRKIVDLYSS--ETECESAVDVPPLDPDP 1018

Query: 3275 DLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELK 3454
            DLE+ GS SF+ DAW CKCSYD QL+GLLGQY+V +EEE+V+GHI+SMPKYSSKKQGE+K
Sbjct: 1019 DLEVEGSSSFLRDAWCCKCSYDEQLLGLLGQYRVEKEEEVVSGHIYSMPKYSSKKQGEVK 1078

Query: 3455 ERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSK-- 3628
            +RL++AY  LRKEFR VFE++   FD    DEKN +YE+KASAWY+VTYHE W++K K  
Sbjct: 1079 DRLRNAYHALRKEFRGVFENLGDVFD--DGDEKNAVYERKASAWYRVTYHEEWVEKWKGW 1136

Query: 3629 --ELQMVDDAG---KTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
               L  V D G      MLSF WIAADYLARIKIRRRRT  +IS + +DSL RYL DKI
Sbjct: 1137 RLALAGVGDEGTAPAAAMLSFPWIAADYLARIKIRRRRTRGEISGEDVDSLARYLTDKI 1195


>ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571449461|ref|XP_006578148.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score = 1647 bits (4264), Expect = 0.0
 Identities = 811/1207 (67%), Positives = 968/1207 (80%), Gaps = 10/1207 (0%)
 Frame = +2

Query: 200  GSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI- 376
            GSE   K  VVTQIS+GG    V A  L++Y E+ IG+V+RCRLKTS TPP+SYP ++I 
Sbjct: 5    GSE---KGSVVTQISIGGFGSEVKASDLLNYLEDKIGLVYRCRLKTSWTPPESYPEFKII 61

Query: 377  DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 556
            DT  I+R +DY+KVEPHAFVHFA   S T+AL+A+G  +L L+ +PLKVS GP+NP+ LN
Sbjct: 62   DTAKIRRTEDYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPKNPYFLN 121

Query: 557  EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 736
            ++RRTT P+K+SDV VE+G + S  EF V WRGP  GV FLVDPF+G C+  F++DTAFS
Sbjct: 122  QRRRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFS 181

Query: 737  FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 916
            FKG  K AVIKC+F++ FL R+I EI+ Y D   L+VLL LASSP ++YRTADDDI+ESV
Sbjct: 182  FKGIDKKAVIKCDFQVGFLVRDINEIRRYNDTSYLVVLLHLASSPWVWYRTADDDIEESV 241

Query: 917  PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 1096
            PFDLLDDDDPWIRTTDFTPSGAIGRCN YRIS+ PR+G  L KA+ YL+ +RV +     
Sbjct: 242  PFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQIQELPL 301

Query: 1097 RHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 1276
            +  L  Q+EPDFGMPM D FF + +++ I+F ++FLVNA++HKGI NQH++S++FF+LLR
Sbjct: 302  KQTLRTQNEPDFGMPMSDAFFYVHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLR 361

Query: 1277 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 1456
            ++P+E+N  ALKH+CSYK P++DA K L++VQ+WLL NPKL +  ++++DIVEVRRL++T
Sbjct: 362  NQPKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVVT 421

Query: 1457 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 1636
            P+KAYC+PPEVELSNRVLR +R ++D FLRVTFMDE M T+N N L YYV P+ + ITSN
Sbjct: 422  PSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSN 481

Query: 1637 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 1816
            S  Q+T ++KRVK IL  GFY CGRKYSFLAFSSNQLRDRSAWFFAEDK     +I+NWM
Sbjct: 482  SFSQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDK-IRCDDIRNWM 540

Query: 1817 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 1996
            GKF  RN+AKCAARMGQCFSSTYATVEV + +VNS LPD+ERN Y+FSDGIG+++  LA 
Sbjct: 541  GKFNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVITHDLAR 600

Query: 1997 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 2176
            EVAEKL++  + P AYQIRYAG+KGV+A WP   DG  L LR SM KF+S H ILEIC+W
Sbjct: 601  EVAEKLKLD-NVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEICAW 659

Query: 2177 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 2356
            TRFQPGFLNRQI+TLLSAL V D IFW+MQE M+ +L++ML D D+AFDV+T SC + G+
Sbjct: 660  TRFQPGFLNRQIITLLSALGVPDEIFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEHGN 719

Query: 2357 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 2536
             AAIMLS GF P TEPHLRGMLTS RAAQL  LREK+RIFV SGRWLMG LDELGVLE G
Sbjct: 720  AAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQG 779

Query: 2537 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 2716
            QCF+QVS PSLE  F KHGSRFSE  K L VVKG V IAKNPCLHPGDVR+LEAVDAP+L
Sbjct: 780  QCFVQVSTPSLENCFSKHGSRFSET-KNLHVVKGFVVIAKNPCLHPGDVRVLEAVDAPDL 838

Query: 2717 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 2896
            HHL+DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPM+YA  E++ L
Sbjct: 839  HHLNDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLL 898

Query: 2897 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 3076
             R V   DIIEFF +NMVNE LG ICNAHVVHAD SDYGALDEKCI LAELAA AVDFPK
Sbjct: 899  TRQVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPK 958

Query: 3077 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 3256
            TGK+VTMPP LKPKLYPDFMGKE  Q+Y SNKILG+LYR IKDA D    E+    F   
Sbjct: 959  TGKLVTMPPHLKPKLYPDFMGKERHQSYRSNKILGRLYRHIKDAYDEDI-EAPYLNFVTG 1017

Query: 3257 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 3436
            +I YD+DLE+ GS  FIADAW  KCSYDGQL GL+GQYKV REEE+VTG IWSMPKY+S+
Sbjct: 1018 DIPYDKDLEVPGSADFIADAWEQKCSYDGQLSGLIGQYKVKREEEVVTGQIWSMPKYNSR 1077

Query: 3437 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 3616
            KQGELKERLKH+YS L+KEFR  FE ++ +  +LS++EKN++YE+KASAWYQVTYH  W+
Sbjct: 1078 KQGELKERLKHSYSALKKEFRYTFEKLNSDVGELSEEEKNLLYEQKASAWYQVTYHPEWV 1137

Query: 3617 KKSKEL-------QMVDDAGKTVMLSFAWIAADYLARIKIRRR--RTENDISTKPIDSLG 3769
            KKS +L       Q  D  G TVMLSF WIA DYLAR KIR+R  R+ N  STKP+D L 
Sbjct: 1138 KKSLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLARTKIRQRHQRSGNFDSTKPVDYLA 1197

Query: 3770 RYLADKI 3790
            +YL++++
Sbjct: 1198 KYLSERL 1204


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score = 1646 bits (4263), Expect = 0.0
 Identities = 799/1200 (66%), Positives = 965/1200 (80%), Gaps = 2/1200 (0%)
 Frame = +2

Query: 197  MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 376
            MGSE +G+ +VVTQ+S GG + +V A  LM Y E+ IG+V RCRLKTS TPP+SYP++E+
Sbjct: 1    MGSE-EGEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEV 59

Query: 377  -DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHL 553
             +   + + DDY+KV PHAFVHF    SA  AL AAGRGELI   K LK SLGPE+P H+
Sbjct: 60   SNVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHI 119

Query: 554  NEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAF 733
            N++RRT +P+KLSDV V++G +   + F V WRGP +G+DFLVDPF+G CK  FTKDTAF
Sbjct: 120  NQRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAF 179

Query: 734  SFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKES 913
            SFK   K   +KC++++EF+ R+I +I  Y D    ++LLQL SSP I+YRTADDDI + 
Sbjct: 180  SFKDNNKHTFLKCDYKMEFIVRDINQITRYTDTSCYVILLQLTSSPCIWYRTADDDIAKL 239

Query: 914  VPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYES 1093
            VP+DLLDDDDPWIRTTDFT SGAIGRCNT+R+SV PRYG  L  A+ YL+++RV  +  +
Sbjct: 240  VPYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLN 299

Query: 1094 PRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLL 1273
               ++L  +EPD+G+ M D FFCI YK+ ISF++LFLVNAVMHKGIINQHQMS++FFDLL
Sbjct: 300  RPPKIL--NEPDYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLL 357

Query: 1274 RSRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLII 1453
            R++P EVN  AL H+ +++ P+ DA K L+LVQ+WLL NP LL+R +E+ DIVE+RRL+I
Sbjct: 358  RNQPNEVNLAALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVI 417

Query: 1454 TPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITS 1633
            TP+KAYC PPEVELSNRVLR Y+++ADRFLRVTFMDE M  +N +V TYYV P+ + ITS
Sbjct: 418  TPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITS 477

Query: 1634 NSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNW 1813
            +S PQ+T +F R+K IL +GF+LCGRKYSFLA+SSNQLRD+SAWFFAE K+  V  I  W
Sbjct: 478  SSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAILGW 537

Query: 1814 MGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLA 1993
            MGKFTN+N+AKCAAR+GQCFSSTYAT+EVP   VN  L D+ERNGYVFSDGIG ++  LA
Sbjct: 538  MGKFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPDLA 597

Query: 1994 VEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICS 2173
             EVA+KL++   PPCAYQIRYAGYKGV+A WP+ KDG  L LR SM KFESNH ILEICS
Sbjct: 598  QEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRILEICS 657

Query: 2174 WTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQG 2353
            WTRFQPGFLNRQI+TLLS L V D IFW MQETM+S+LDRM+ DTD+AF+V+T SC +QG
Sbjct: 658  WTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQG 717

Query: 2354 STAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEH 2533
            + AAIMLSAGF+P+TEPHLRGML  IRAAQL  LREKARIFV  GRW MGC DE GVL+ 
Sbjct: 718  NAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQE 777

Query: 2534 GQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPE 2713
            GQCFIQVS P LE+ F KHGS F+E +  L VV+G V IAKNPCLHPGDVRILEAVDAPE
Sbjct: 778  GQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPE 837

Query: 2714 LHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEARE 2893
            LHHL+DCLVFP+ G+RPHTNEASGSDLDGDLYF TWD NLIPPSK+SW PM+YA  E + 
Sbjct: 838  LHHLYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKT 897

Query: 2894 LPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFP 3073
            L R +   DI+EFF KNM+NESLGTICNAHVVHAD S +GALDE CI+L+ELAA AVDFP
Sbjct: 898  LQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVDFP 957

Query: 3074 KTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDA-NDRGYEESSEQTFA 3250
            KTGK+VTMPP LKPKLYPDFMGKE  Q+Y S KILGK+YR+I+DA +D     S E  F 
Sbjct: 958  KTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFT 1017

Query: 3251 LENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYS 3430
              ++ YD DLE+ G++ FIA+AW+ KCSYDGQL GLLGQYKVNREEE+VTGHIWSMPKY 
Sbjct: 1018 PGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYV 1077

Query: 3431 SKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHES 3610
            S+KQGELKE+LKH+YSTL+K+FR+VFE++ PEF+QL+ DE+N +YEKKASAWYQV YH +
Sbjct: 1078 SRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYHPT 1137

Query: 3611 WLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 3790
            WLKKS EL+  D      MLSF WIAADYLARIKI+ RRT++   TKPI+SL  YL+D++
Sbjct: 1138 WLKKSLELREPDAPEAVPMLSFPWIAADYLARIKIKCRRTKSFDPTKPINSLASYLSDRM 1197