BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00003204
         (3687 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlise...  1866   0.0  
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...  1779   0.0  
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...  1777   0.0  
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...  1746   0.0  
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub...  1734   0.0  
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1718   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1699   0.0  
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...  1655   0.0  
gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...  1639   0.0  
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...  1630   0.0  
gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus pe...  1624   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1606   0.0  
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...  1606   0.0  
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...  1602   0.0  
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub...  1586   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...  1582   0.0  
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n...  1572   0.0  
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a...  1571   0.0  
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV a...  1560   0.0  
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...  1552   0.0  

>gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlisea aurea]
          Length = 1205

 Score = 1866 bits (4834), Expect = 0.0
 Identities = 908/1193 (76%), Positives = 1042/1193 (87%), Gaps = 4/1193 (0%)
 Frame = -3

Query: 3568 EEAGPS-SKEKFANGSTQMEIXXXXXXXXXXXXDELGSAMQGLDEGYLKMFCRKAATSFF 3392
            ++ GPS SK+K  NG+T M+I            D++ +AMQ LDEG +K FCRKAATSFF
Sbjct: 2    DDVGPSTSKDKLFNGNTFMDIDEDIDFDLSDSDDDIDNAMQDLDEGVVKSFCRKAATSFF 61

Query: 3391 EKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGD-GDWRYASLKFGKVTL 3215
            E++GLISHQ+NSYN+F+ HGI Q+F S+GEI VEP +DPSK+GD G+W+ ASLKFGKV L
Sbjct: 62   EQHGLISHQLNSYNNFINHGIHQLFASIGEIIVEPGYDPSKRGDDGEWQKASLKFGKVNL 121

Query: 3214 EHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQV-YTKGLSRSDKFK 3038
            E P+F+ GEKFSS +G +++L+L P++ARLQNMTY++RIKVETHL+V YT+GL RS+KF 
Sbjct: 122  ERPSFWTGEKFSSAEGAKDNLELHPKHARLQNMTYAARIKVETHLEVVYTEGLVRSEKFT 181

Query: 3037 TGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTF 2858
            TGV   V +T L     ++ FG+LPVMV SDLCW+ S+ K+DCEFDQGGYF+IKGAEKTF
Sbjct: 182  TGVSTHVQRTTLKSLSLEINFGKLPVMVNSDLCWLKSTGKKDCEFDQGGYFIIKGAEKTF 241

Query: 2857 IAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVPKVENIMGADKILTVYFYVTEIP 2678
            IAQEQ+CL RLWV+K PTWT++YRP++KR+R+Y+KLVPKVE+    +KILTVYF   E+P
Sbjct: 242  IAQEQICLKRLWVSKDPTWTISYRPITKRRRIYLKLVPKVESAPVGEKILTVYFSFVEMP 301

Query: 2677 IWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDL 2498
            IW+LFFALG  ND+EVV +ID+DIEDSAIANIL+ASI+DAD KYEGFRK G+A+KH++DL
Sbjct: 302  IWILFFALGARNDKEVVKMIDMDIEDSAIANILLASIHDADSKYEGFRKNGSAIKHLKDL 361

Query: 2497 MKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDLRNK 2318
            M+  K PP ESVEE  + +LFP+L S  QKAC LAYMVKCLLE Y+GRRKVDNRDDLRNK
Sbjct: 362  MQEGKYPPTESVEEYFQIHLFPHLKSSVQKACFLAYMVKCLLECYKGRRKVDNRDDLRNK 421

Query: 2317 XXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFST 2138
                        L+I IKHAER M++S+QRDLD+ R+LQ I+HYLDASIITNGLSRAFST
Sbjct: 422  RLELAGELLERELRIQIKHAERRMMRSMQRDLDKGRDLQTIDHYLDASIITNGLSRAFST 481

Query: 2137 GAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKIC 1958
            GAWSHPYK+MER+SG+VAT+RRTNPLQA ADMRKTRQQVSYTGRVGDARYPHPSHWGKIC
Sbjct: 482  GAWSHPYKRMERISGIVATLRRTNPLQAIADMRKTRQQVSYTGRVGDARYPHPSHWGKIC 541

Query: 1957 FLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFL 1778
            FLSTPDGENCGLVKNLAS+GLVST +L QE LL++FRECGME+L DD SSLLDGK+KIFL
Sbjct: 542  FLSTPDGENCGLVKNLASLGLVSTEVLDQEGLLKKFRECGMEQLADDTSSLLDGKHKIFL 601

Query: 1777 DGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQN 1598
            DGD VG+C+DSSSFVS LRR+R++ EVP+QVEIK D+ +GEVR+F DAGRILRPLLVV+N
Sbjct: 602  DGDLVGVCRDSSSFVSMLRRRRQKNEVPHQVEIKMDQSNGEVRVFADAGRILRPLLVVRN 661

Query: 1597 LKKIKDLKGDFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELD 1418
            L+KI DLK    FQSLLD G++E IGPEEEEDCQTAWG K+LF AEL+NPPV+Y+HCELD
Sbjct: 662  LRKINDLKSHVFFQSLLDVGIVELIGPEEEEDCQTAWGTKYLFMAELENPPVKYSHCELD 721

Query: 1417 SSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPL 1238
            SSFLLGLSCG+IPFANHDHARRVLYQSEKHSQQAIG+STT+P+IR+DTNSHQLYYPQ+PL
Sbjct: 722  SSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTSPNIRVDTNSHQLYYPQKPL 781

Query: 1237 FRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGM 1058
            FRT+L+DCLGK   S  +K ++P P FFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGM
Sbjct: 782  FRTVLSDCLGKLTDSCRRKGIIPLPPFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGM 841

Query: 1057 FRTEHVRSYKAEVENPE-APGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTG 881
            FR+EHVRSYK++V+N E AP KK K DDL+SFGK QSKIGRVDSL++DGFPYVGANLQTG
Sbjct: 842  FRSEHVRSYKSDVDNSEAAPVKKFKADDLISFGKVQSKIGRVDSLDEDGFPYVGANLQTG 901

Query: 880  DIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSM 701
            DIVIGK  A+GVDHSIKLKHTERGMVQKV+LS++DEG+N+AVVSLRQVRSPCLGDKFSSM
Sbjct: 902  DIVIGKCTATGVDHSIKLKHTERGMVQKVILSADDEGRNYAVVSLRQVRSPCLGDKFSSM 961

Query: 700  HGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKY 521
            HGQKGVLGFLESQENFPFT+QGIVPDIVINPHAFPSRQTPGQ               LKY
Sbjct: 962  HGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGLKY 1021

Query: 520  ATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKV 341
            ATPFS+PSVEDITAQLHRLGFSRWG E+VYDGRTGE + SLIFMGPTFYQRLTHM+EDKV
Sbjct: 1022 ATPFSSPSVEDITAQLHRLGFSRWGAEKVYDGRTGEALKSLIFMGPTFYQRLTHMAEDKV 1081

Query: 340  KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHIC 161
            KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHIC
Sbjct: 1082 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHIC 1141

Query: 160  RKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLLCQELFSM 2
            RKC N+ANVIQR V GGRK+RGPYCRFCESVEDVVRVNVPYGAKLLCQELFSM
Sbjct: 1142 RKCKNMANVIQRPVFGGRKVRGPYCRFCESVEDVVRVNVPYGAKLLCQELFSM 1194


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score = 1779 bits (4607), Expect = 0.0
 Identities = 884/1207 (73%), Positives = 1008/1207 (83%), Gaps = 15/1207 (1%)
 Frame = -3

Query: 3577 DFLEEAGPSS-KEKFANGSTQMEIXXXXXXXXXXXXDELGS-----------AMQGLDEG 3434
            D +EE G SS KEK +NGS +M+              +               ++ L E 
Sbjct: 5    DIMEEVGCSSGKEKISNGSARMDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKELGET 64

Query: 3433 YLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGD 3254
            YLK FC+KA+T FFEKYGLISHQINSYNDF+ +GIQ+VFDSVGEI VEP +DPSK+GDGD
Sbjct: 65   YLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGD 124

Query: 3253 WRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQV 3074
            W++AS+KFGKVTLE P F+AGEKFS+ DG +E+L L PR+ARLQNMTYS+RI VETH+QV
Sbjct: 125  WKHASVKFGKVTLERPKFWAGEKFSA-DGGKEYLDLLPRHARLQNMTYSARIMVETHVQV 183

Query: 3073 YTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQG 2894
            YTK L RSDKFKTGV+ FVDK    +   DV+ GR+PVMV S+LCWMN  +K DCEFD G
Sbjct: 184  YTKKLVRSDKFKTGVDQFVDKECEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHG 243

Query: 2893 GYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KVENIMGA 2720
            GYF++KGAEKTFIAQEQ+CL RLWV+  PTW V YRP  KRKRVYIKL    K+E+I G 
Sbjct: 244  GYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGG 303

Query: 2719 DKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEG 2540
            +K L+VY  + E+PIWVLFFALGVS+DREVVNLID+DIED+ I NIL+ASI++ADK  E 
Sbjct: 304  EKALSVYI-LAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCED 362

Query: 2539 FRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYR 2360
            FRK   A+ +++ L+K+ K PP+ESVEECI  YLFPNLS  +QKA  L YMVKCLL ++ 
Sbjct: 363  FRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFI 422

Query: 2359 GRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLD 2180
            GRRKVDNRDD RNK            L+ HIKHAER MVK++QRDL  DR++QPIEHYLD
Sbjct: 423  GRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLD 482

Query: 2179 ASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVG 2000
            ASIITNGLSRAFSTG W HPYK+MERVSGVVAT+RRTNPLQ TADMRK+RQQV+YTG+VG
Sbjct: 483  ASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVG 542

Query: 1999 DARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDD 1820
            DARYPHPSHWGK+CFLSTPDGENCGLVKNLASMGLVST IL+    L+    CGM+KL D
Sbjct: 543  DARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP--FLETLFRCGMQKLVD 600

Query: 1819 DMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFI 1640
            D ++ L GK K+ LDG+WVG+C+DS+ FVSKLRRKRRR EVP+QVE+K+D+  GEVRIF 
Sbjct: 601  DCATSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFS 660

Query: 1639 DAGRILRPLLVVQNLKKIKDLKG-DFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTA 1463
            D+GRILRPLLVV NLKKIK LKG D+ FQSLLD+G+IEFIGPEEEEDC+TAWG++++  A
Sbjct: 661  DSGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIEFIGPEEEEDCRTAWGVEYILKA 720

Query: 1462 ELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIR 1283
            + +NPP +YTHCELD SFLLGLSCG+IPFANHDHARRVLYQSEKHSQQAIG+ST NP+ R
Sbjct: 721  DKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNR 780

Query: 1282 IDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQ 1103
            +DTN+HQLYYPQRPLFRT+LAD LGK K + +QK MLPRPE+FNGQCAIVAVNVHLGYNQ
Sbjct: 781  VDTNTHQLYYPQRPLFRTMLADSLGKPKCTQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQ 840

Query: 1102 EDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLE 923
            EDSLVMNRASLERGMFR+EHVRSYKAEV+N EA  KK KI+D V+FGKTQSKIGRVDSL+
Sbjct: 841  EDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLD 900

Query: 922  DDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLR 743
            DDGFP++GANLQ+GDI+IGK A SG DHS+KLKHTERGMVQKV+LS+NDEGKNFAVVSLR
Sbjct: 901  DDGFPFIGANLQSGDIIIGKFAESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLR 960

Query: 742  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXX 563
            QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQ    
Sbjct: 961  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 1020

Query: 562  XXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGP 383
                        KYATPFST SV+ I  QL   GF+RWG+ERVY+GRTGE VHSLIFMGP
Sbjct: 1021 ALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGP 1080

Query: 382  TFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 203
            TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE
Sbjct: 1081 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1140

Query: 202  RLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLL 23
            RLFTLSDSSQMHIC KC N+ANVIQR V GG K+RGP+CRFCESVED+V+VNVPYGAKLL
Sbjct: 1141 RLFTLSDSSQMHICGKCKNMANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGAKLL 1199

Query: 22   CQELFSM 2
            CQELFSM
Sbjct: 1200 CQELFSM 1206


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
            lycopersicum]
          Length = 1217

 Score = 1777 bits (4603), Expect = 0.0
 Identities = 884/1207 (73%), Positives = 1007/1207 (83%), Gaps = 15/1207 (1%)
 Frame = -3

Query: 3577 DFLEEAGPSS-KEKFANGSTQMEIXXXXXXXXXXXXDELGS-----------AMQGLDEG 3434
            D +EE G SS KEK +NGST+M+              +               ++ L E 
Sbjct: 5    DIMEEVGCSSGKEKISNGSTRMDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKELGES 64

Query: 3433 YLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGD 3254
            +LK FC+KA+T FFEKYGLISHQINSYNDF+ +GIQ+VFDSVGEI VEP +DPSK+GDGD
Sbjct: 65   FLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGD 124

Query: 3253 WRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQV 3074
            W++AS+KFGKVTLE P F+AGEKFS VDG +E+L L PR+ARLQNMTYS+RI VETH+QV
Sbjct: 125  WKHASVKFGKVTLERPKFWAGEKFS-VDGGKEYLDLLPRHARLQNMTYSARIMVETHVQV 183

Query: 3073 YTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQG 2894
            YTK L RSDKFKTGV+ FVDK    +   DV+ GR+PVMV S+LCWMN  +K DCEFD G
Sbjct: 184  YTKKLVRSDKFKTGVDRFVDKEWEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHG 243

Query: 2893 GYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KVENIMGA 2720
            GYF++KGAEKTFIAQEQ+CL RLWV+  PTW V YRP  KRKRVYIKL    K+E+I G 
Sbjct: 244  GYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGG 303

Query: 2719 DKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEG 2540
            +K L+VY  + E+PIWVLFFALGVS+DREVVNLID+DIED+ I NIL+ASI++ADK  E 
Sbjct: 304  EKALSVYI-LAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCED 362

Query: 2539 FRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYR 2360
            FRK   A+ +++ L+K+ K PP+ESVEECI  YLFPNLS  +QKA  L YMVKCLL ++ 
Sbjct: 363  FRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFI 422

Query: 2359 GRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLD 2180
            GRRKVDNRDD RNK            L+ HIKHAER MVK++QRDL  DR++QPIEHYLD
Sbjct: 423  GRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLD 482

Query: 2179 ASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVG 2000
            ASIITNGLSRAFSTG W HPYK+MERVSGVVAT+RRTNPLQ TADMRK+RQQV+YTG+VG
Sbjct: 483  ASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVG 542

Query: 1999 DARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDD 1820
            DARYPHPSHWGK+CFLSTPDGENCGLVKNLASMGLVST IL+    L+    CGM+KL D
Sbjct: 543  DARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP--FLETLFRCGMQKLVD 600

Query: 1819 DMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFI 1640
            D S+ L GK K+ LDG+WVG+C+DS+ FVSKLRRKRRR EVP+QVE+K+D+  GEVRIF 
Sbjct: 601  DCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFS 660

Query: 1639 DAGRILRPLLVVQNLKKIKDLKG-DFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTA 1463
            D GRILRPLLVV NLKKIK LKG D+ FQSLLD+G+IE IGPEEEEDC+TAWG++++  A
Sbjct: 661  DPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKA 720

Query: 1462 ELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIR 1283
            + +NPP +YTHCELD SFLLGLSCG+IPFANHDHARRVLYQSEKHSQQAIG+ST NP+ R
Sbjct: 721  DKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNR 780

Query: 1282 IDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQ 1103
            +DTN+HQLYYPQRPLFRT+LAD LGK K + +QK MLPRPE+FNGQCAIVAVNVHLGYNQ
Sbjct: 781  VDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQ 840

Query: 1102 EDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLE 923
            EDSLVMNRASLERGMFR+EHVRSYKAEV+N EA  KK KI+D V+FGKTQSKIGRVDSL+
Sbjct: 841  EDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLD 900

Query: 922  DDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLR 743
            DDGFP++GANLQ+GDI+IGK + SG DHS+KLKHTERGMVQKV+LS+NDEGKNFAVVSLR
Sbjct: 901  DDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLR 960

Query: 742  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXX 563
            QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQ    
Sbjct: 961  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 1020

Query: 562  XXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGP 383
                        KYATPFST SV+ I  QL   GF+RWG+ERVY+GRTGE VHSLIFMGP
Sbjct: 1021 ALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGP 1080

Query: 382  TFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 203
            TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE
Sbjct: 1081 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1140

Query: 202  RLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLL 23
            RLFTLSDSSQMHIC KC N+ANVIQR V GG K+RGP+CRFCESVED+V+VNVPYGAKLL
Sbjct: 1141 RLFTLSDSSQMHICGKCKNMANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGAKLL 1199

Query: 22   CQELFSM 2
            CQELFSM
Sbjct: 1200 CQELFSM 1206


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1219

 Score = 1746 bits (4522), Expect = 0.0
 Identities = 863/1209 (71%), Positives = 1003/1209 (82%), Gaps = 17/1209 (1%)
 Frame = -3

Query: 3577 DFLEEAGPSS-KEKFANGSTQMEIXXXXXXXXXXXXDELG---------SAMQGLDEGYL 3428
            D +E+ G SS K K +NGST M+              +           ++++ L  G+L
Sbjct: 5    DIMEDVGCSSGKAKTSNGSTMMDFDIDGLFEVEDYDWDEDEDEDDNLDMTSIKELGGGFL 64

Query: 3427 KMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWR 3248
            + FC+KA+  FFEKYG+ISHQI+SYNDF+++GIQ+VFDSVGEI VEP +DPSKKG+G+W+
Sbjct: 65   RNFCKKASAGFFEKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGYDPSKKGEGEWK 124

Query: 3247 YASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYT 3068
            +AS+KFGKVTL+ P F+AGEKFS+ +G +E+L L PR+ARLQNMTYS+RI VETH+QV+T
Sbjct: 125  HASVKFGKVTLDRPKFWAGEKFSAYNG-EEYLDLWPRHARLQNMTYSARIIVETHVQVFT 183

Query: 3067 KGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGY 2888
            K L RSDKFKTGVE FVDK  + +   DV  GR+PVMV S+LCWM+ +++ DC+FD GGY
Sbjct: 184  KKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRPDCDFDHGGY 243

Query: 2887 FVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KVENIMGADK 2714
            F++KGAEK FIAQEQ+CL RLWV+   TW VAYR   KR RVY+KL    K E+I G  K
Sbjct: 244  FIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEHIKGEAK 303

Query: 2713 ILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEGFR 2534
             L+VYF + E+PIWVLFFALGVS+DRE+V+LID+DI+D+ I NIL+ASI+DADK  E FR
Sbjct: 304  ALSVYF-LAEMPIWVLFFALGVSSDREIVDLIDVDIKDTNIINILVASIHDADKNCEDFR 362

Query: 2533 KEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGR 2354
            K   A+ +++ L+KS K PP+ESVEECIK YLFPNLS  +QKA  L YMVKCLL +Y GR
Sbjct: 363  KGKKALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGR 422

Query: 2353 RKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDAS 2174
            RKVDNRDD RNK            L+ HIKHAER MVK++QRDL  DR++QP+EHYLDAS
Sbjct: 423  RKVDNRDDFRNKRLDLAGELLERELRAHIKHAERRMVKALQRDLCGDRQVQPLEHYLDAS 482

Query: 2173 IITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDA 1994
            IITNGLSRAFSTG W HPYK+MERVSGVVAT+RRTNPLQ TAD+RKTRQQV+YTG+VGDA
Sbjct: 483  IITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKVGDA 542

Query: 1993 RYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDM 1814
            RYPHPSHWGK+CFLSTPDGENCGLVKNLASMGLVSTT+L+   LL+    CGM+KL DD 
Sbjct: 543  RYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLKP--LLETLFRCGMQKLVDDS 600

Query: 1813 SSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDA 1634
            ++ L GK K+ LDGDWVG+C+DS+ FVSKLRRKRRR EVP+QVE+K+D+   EVRIF DA
Sbjct: 601  ATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEVRIFSDA 660

Query: 1633 GRILRPLLVVQNLKKIKDLK-----GDFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLF 1469
            GRI+RPLLVV NLK IK LK     GD+ FQ+LLD G+IE IGPEEEEDC+TAWG+++L 
Sbjct: 661  GRIMRPLLVVSNLKNIKSLKDGMKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLL 720

Query: 1468 TAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPS 1289
             A+ +NPPV YTHCELD SFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIG+ST NP+
Sbjct: 721  KADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 780

Query: 1288 IRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGY 1109
             R+DTN+HQLYYPQRPLF T+L+D LGK K   HQK ML RPE++NGQCAIVAVNVHLGY
Sbjct: 781  ARVDTNTHQLYYPQRPLFGTMLSDSLGKPKCGRHQKGMLSRPEYYNGQCAIVAVNVHLGY 840

Query: 1108 NQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDS 929
            NQEDS+VMNRASLERGMFR+EHVRSYKAEV+N EA GKK K++D V+FGKTQSKIGRVDS
Sbjct: 841  NQEDSVVMNRASLERGMFRSEHVRSYKAEVDNKEAMGKKSKVEDSVNFGKTQSKIGRVDS 900

Query: 928  LEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVS 749
            L+DDGFP++GANLQ+GDI+IGK+A SG DHS+K+KHTERGMVQKV+LS+ND+GKNFAVVS
Sbjct: 901  LDDDGFPFIGANLQSGDIIIGKYAESGADHSVKMKHTERGMVQKVLLSANDDGKNFAVVS 960

Query: 748  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXX 569
            LRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQ  
Sbjct: 961  LRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLL 1020

Query: 568  XXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFM 389
                          KYATPFS  SV+ I  QLH  GFSRWG ERVY+GRTGE VHSLIFM
Sbjct: 1021 EAALGKGIALGGGEKYATPFSALSVDAILKQLHGRGFSRWGSERVYNGRTGEMVHSLIFM 1080

Query: 388  GPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 209
            GPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL
Sbjct: 1081 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1140

Query: 208  HERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAK 29
            HERLFTLSDSSQMHIC KC N+ANVIQR+  GG KIRGP+CRFCESVED+V+V+VPYGAK
Sbjct: 1141 HERLFTLSDSSQMHICGKCKNMANVIQRSAPGG-KIRGPFCRFCESVEDIVKVDVPYGAK 1199

Query: 28   LLCQELFSM 2
            LLCQELFSM
Sbjct: 1200 LLCQELFSM 1208


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
            lycopersicum]
          Length = 1219

 Score = 1734 bits (4491), Expect = 0.0
 Identities = 864/1209 (71%), Positives = 997/1209 (82%), Gaps = 17/1209 (1%)
 Frame = -3

Query: 3577 DFLEEAGPSS-KEKFANGSTQM--------EIXXXXXXXXXXXXDELGSA-MQGLDEGYL 3428
            D +E+ G SS K K +NGST M        E+            D L  A ++ L  G+L
Sbjct: 5    DIMEDVGCSSGKGKTSNGSTMMDFDIDGLFEVGDYDWDDDEDEDDNLDMASIKELGGGFL 64

Query: 3427 KMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWR 3248
            + FC+KA+  FFEKYGLISHQI+SYNDF+++GIQ+VFDSVGEI VEP +DPSKKG+G+W+
Sbjct: 65   RNFCKKASAGFFEKYGLISHQIDSYNDFIRYGIQKVFDSVGEIHVEPGYDPSKKGEGEWK 124

Query: 3247 YASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYT 3068
            +AS+KFG V L+ P F+AGEK+S+ +G +E+L + PR+ARLQNMTYS+RI VETH+QV+T
Sbjct: 125  HASVKFGNVILDRPKFWAGEKYSAYNG-EEYLNMWPRHARLQNMTYSARIIVETHVQVFT 183

Query: 3067 KGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGY 2888
            K L RSDKFKTGVE FVDK  + +   DV  GR+PVMV S+LCWM+ +++ DCEFD GGY
Sbjct: 184  KKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRLDCEFDHGGY 243

Query: 2887 FVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KVENIMGADK 2714
            F++KGAEK FIAQEQMCL RLWV+   TW VAYR   KR RVY+KL    K E I G  K
Sbjct: 244  FIVKGAEKIFIAQEQMCLKRLWVSNHYTWMVAYRSGEKRNRVYLKLTETLKHEQIKGEAK 303

Query: 2713 ILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEGFR 2534
             L+VYF + E+PIWVLFFALGVS+DREVV+LID+DI+D+ I NIL+ASI+DADK  E FR
Sbjct: 304  SLSVYF-LAEMPIWVLFFALGVSSDREVVDLIDVDIKDNKIINILVASIHDADKNCEDFR 362

Query: 2533 KEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGR 2354
            K   A+ +++ L+KS K PP+ESVEECIK YLFPNLS  +QKA  L YMVKCLL +Y GR
Sbjct: 363  KGKRALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGR 422

Query: 2353 RKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDAS 2174
            RKVDNRDD RNK            L++HIKHAER MVK++QRDL  DR++ PIEHYLDAS
Sbjct: 423  RKVDNRDDFRNKRLDLAGELLERELRVHIKHAERRMVKALQRDLCGDRQVHPIEHYLDAS 482

Query: 2173 IITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDA 1994
            IITNGLSRAFSTG W HPYK+MERVSGVVAT+RRTNPLQ TAD+RKTRQQV+YTG+VGDA
Sbjct: 483  IITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKVGDA 542

Query: 1993 RYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDM 1814
            RYP+PSHWGK+CFLSTPDGENCGLVKNLASMGLVSTT+L    LL+    CGM+KL DD 
Sbjct: 543  RYPNPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLMP--LLETLFRCGMQKLVDDC 600

Query: 1813 SSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDA 1634
            ++ L GK K+ LDGDWVG+C+DS+ FVSKLRRKRRR EVP+QVE+K+D+   EVRIF DA
Sbjct: 601  ATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEVRIFSDA 660

Query: 1633 GRILRPLLVVQNLKKIKDLKG-----DFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLF 1469
            GRI+RPLLVV NLK IK L G     D+ FQ+LLD G+IE IGPEEEEDC+TAWG+++L 
Sbjct: 661  GRIMRPLLVVSNLKNIKALNGGVKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLL 720

Query: 1468 TAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPS 1289
             A+ +NPPV YTHCELD SFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIG+ST NP+
Sbjct: 721  KADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 780

Query: 1288 IRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGY 1109
            IR+DTN+HQLYYPQRPLF T+L+D LGK K + HQ+ ML RPE++NGQCAIVAVNVHLGY
Sbjct: 781  IRVDTNTHQLYYPQRPLFGTMLSDSLGKPKCARHQRGMLSRPEYYNGQCAIVAVNVHLGY 840

Query: 1108 NQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDS 929
            NQEDS+VMNRASLERGMFR+EHVRSYKAEV+N EA GKK K +D V+FGKTQSKIGRVD 
Sbjct: 841  NQEDSVVMNRASLERGMFRSEHVRSYKAEVDNMEATGKKSKAEDSVNFGKTQSKIGRVDC 900

Query: 928  LEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVS 749
            L+DDG PY+GANLQ+GDI+IGK A SG DHS+K+KHTE+GMVQKV+LS+NDEGKNFAVVS
Sbjct: 901  LDDDGLPYIGANLQSGDIIIGKFAESGADHSVKMKHTEKGMVQKVLLSANDEGKNFAVVS 960

Query: 748  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXX 569
            LRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQ  
Sbjct: 961  LRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLL 1020

Query: 568  XXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFM 389
                          KYATPFS  SV+ I  QLH  GFSRWG+ERVY+GRTGE VHSLIFM
Sbjct: 1021 EAALGKGIALGGGEKYATPFSALSVDAILKQLHGRGFSRWGNERVYNGRTGEMVHSLIFM 1080

Query: 388  GPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 209
            GPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL
Sbjct: 1081 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1140

Query: 208  HERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAK 29
            HERLFTLSDSSQMHIC KC N+ANVIQR V GG K+RGP+CRFCESVED+V+V VPYGAK
Sbjct: 1141 HERLFTLSDSSQMHICGKCKNMANVIQRPVPGG-KVRGPFCRFCESVEDIVKVGVPYGAK 1199

Query: 28   LLCQELFSM 2
            LLCQELFSM
Sbjct: 1200 LLCQELFSM 1208


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1718 bits (4449), Expect = 0.0
 Identities = 851/1206 (70%), Positives = 997/1206 (82%), Gaps = 10/1206 (0%)
 Frame = -3

Query: 3589 MGAWDFLEEAGPSSK--EKFANGSTQMEIXXXXXXXXXXXXDELGSA-MQGLDEGYLKMF 3419
            MGA D   + G SS   EK +NG  QMEI              +GS  +  L++ YLK F
Sbjct: 1    MGASDAKGDLGMSSSMGEKLSNG-VQMEIDDDL----------MGSIEIDDLNKEYLKTF 49

Query: 3418 CRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYAS 3239
            C+K A SFF +YGLI HQINS+NDF+K+GIQ+VFDS GEI VEP +DPSK+G+GDWRYAS
Sbjct: 50   CKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYAS 109

Query: 3238 LKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGL 3059
            ++FGKVTLE P  +AGE     DG +E L   PR+ARLQNMTYSSR+K + H QVYT+ L
Sbjct: 110  VRFGKVTLERPRVWAGES----DG-KESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKL 164

Query: 3058 SRSDKFKTGVEN-FVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFV 2882
             RSDK+KTG +N +V+K V+ + + D++ GR+PVMVKS+LCWMN  E+ DCE+D GGYF+
Sbjct: 165  VRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFL 224

Query: 2881 IKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP-KVENIMGADKILT 2705
            IKGAEKTFIAQEQ+CL RLWV+  PTW VAYRP+ KRKRVY+KL P K EN  G +K+LT
Sbjct: 225  IKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLT 284

Query: 2704 VYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEG----F 2537
            VYF  TEIPIW+LFFALG S+D+EVV+LID +I+D+ I+NIL+ASI++AD++ E     F
Sbjct: 285  VYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYF 344

Query: 2536 RKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRG 2357
            R++GNA+  ++ L+KS K PP ES++ECI  YLFPN S  +QKA  L YMVKCLL+AY G
Sbjct: 345  RRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTG 404

Query: 2356 RRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDA 2177
            RRK DNRDD RNK            L++HI+HAER MVK++QR+L  DR+L+PIE+YLDA
Sbjct: 405  RRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDA 464

Query: 2176 SIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGD 1997
            SIITNGLSRAFSTG WSHP+K+MER+SGVVAT+RRTNPLQ TADMRKTRQQV YTG+VGD
Sbjct: 465  SIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGD 524

Query: 1996 ARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDD 1817
            ARYPHPSHWGK+CFLSTPDGENCGLVKNLA  GLVST +L  + L+ +  +CGMEKL DD
Sbjct: 525  ARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVL--DPLVDKLFDCGMEKLVDD 582

Query: 1816 MSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFID 1637
             S+ L GK K+FLDGDWVG+C+D  SFV +LR KRR  E+P QVEIK+D+  GEVRIF D
Sbjct: 583  TSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSD 642

Query: 1636 AGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAE 1460
            AGRILRPLLVV+NLKK+K  KGD F+FQSLLD G++E IG EEEEDC TAWGIK+L    
Sbjct: 643  AGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGH 702

Query: 1459 LDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRI 1280
             D+PPV+YTHCELD SFLLGLSCG+IP+ANHDHARRVLYQSEKHSQQAIG+STTNP+IR+
Sbjct: 703  -DDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRV 761

Query: 1279 DTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQE 1100
            DT SHQLYYPQRPLFRT+++DCLGK   S+  K ++PRPE+FNGQ AIVAVNVHLGYNQE
Sbjct: 762  DTLSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQE 821

Query: 1099 DSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLED 920
            DSLVMNRASLERGMFR+EH+RSYK+EV+N E+  KK+K +D V FGK QSKIGRVDSL+D
Sbjct: 822  DSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDD 881

Query: 919  DGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQ 740
            DGFP++GANLQ GDIVIG+ A SGVDHSIKLKHTERGMVQKVV+S+ND+GKNFAVVSLRQ
Sbjct: 882  DGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQ 941

Query: 739  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXX 560
            VR+PCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQ     
Sbjct: 942  VRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 1001

Query: 559  XXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPT 380
                      L++ATPFST SV+ I  QLHR GFSRWG ERVY+GRTGE + SLIFMGPT
Sbjct: 1002 LGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPT 1061

Query: 379  FYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHER 200
            FYQRL HM+EDKVKFRNTGPVHPLTRQPV+DRKRFGGIKFGEMERDCLIAHGAAANLHER
Sbjct: 1062 FYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHER 1121

Query: 199  LFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLLC 20
            LFTLSDS+ MHICR+C N++NVIQR+V GGRK+RGPYCR+CES E++V+VNVPYGAKLLC
Sbjct: 1122 LFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLC 1181

Query: 19   QELFSM 2
            QELFSM
Sbjct: 1182 QELFSM 1187


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1699 bits (4399), Expect = 0.0
 Identities = 846/1206 (70%), Positives = 989/1206 (82%), Gaps = 10/1206 (0%)
 Frame = -3

Query: 3589 MGAWDFLEEAGPSSK--EKFANGSTQMEIXXXXXXXXXXXXDELGSA-MQGLDEGYLKMF 3419
            MGA D   + G SS   EK +NG  QMEI              +GS  +  L++ YLK F
Sbjct: 37   MGASDAKGDLGMSSSMGEKLSNG-VQMEIDDDL----------MGSIEIDDLNKEYLKTF 85

Query: 3418 CRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYAS 3239
            C+K A SFF +YGLI HQINS+NDF+K+GIQ+VFDS GEI VEP +DPSK+G+GDWRYAS
Sbjct: 86   CKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYAS 145

Query: 3238 LKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGL 3059
            ++FGKVTLE P  +AGE     DG +E L   PR+ARLQNMTYSSR+K + H QVYT+ L
Sbjct: 146  VRFGKVTLERPRVWAGES----DG-KESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKL 200

Query: 3058 SRSDKFKTGVEN-FVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFV 2882
             RSDK+KTG +N +V+K V+ + + D++ GR+PVMVKS+LCWMN  E+ DCE+D GGYF+
Sbjct: 201  VRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFL 260

Query: 2881 IKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP-KVENIMGADKILT 2705
            IKGAEKTFIAQEQ+CL RLWV+  PTW VAYRP+ KRKRVY+KL P K EN  G +K+LT
Sbjct: 261  IKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLT 320

Query: 2704 VYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEG----F 2537
            VYF  TEIPIW+LFFALG S+D+EVV+LID +I+D+ I+NIL+ASI++AD++ E     F
Sbjct: 321  VYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYF 380

Query: 2536 RKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRG 2357
            R++GNA+  ++ L+KS K PP ES++ECI  YLFPN S  +QKA  L YMVKCLL+AY G
Sbjct: 381  RRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTG 440

Query: 2356 RRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDA 2177
            RRK DNRDD RNK            L++HI+HAER MVK++QR+L  DR+L+PIE+YLDA
Sbjct: 441  RRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDA 500

Query: 2176 SIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGD 1997
            SIITNGLSRAFSTG WSHP+K+MER+SGVVAT+RRTNPLQ TADMRKTRQQV YTG+VGD
Sbjct: 501  SIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGD 560

Query: 1996 ARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDD 1817
            ARYPHPSHWGK+CFLSTPDGENCGLVKNLA  GLVST +L  + L+ +  +CGMEKL DD
Sbjct: 561  ARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVL--DPLVDKLFDCGMEKLVDD 618

Query: 1816 MSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFID 1637
             S+ L GK K+FLDGDWVG+C+D  SFV +LR KRR  E+P QVEIK+D+  GEVRIF D
Sbjct: 619  TSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSD 678

Query: 1636 AGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAE 1460
            AGRILRPLLVV+NLKK+K  KGD F+FQSLLD G++E IG EEEEDC TAWGIK+L    
Sbjct: 679  AGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGH 738

Query: 1459 LDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRI 1280
             D+PPV+YTHCELD SFLLGLSCG+IP+ANHDHARRVLYQSEKHSQQAIG+STTNP+IR+
Sbjct: 739  -DDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRV 797

Query: 1279 DTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQE 1100
            DT SHQLYYPQRPLFRT+++D              LPRPE+FNGQ AIVAVNVHLGYNQE
Sbjct: 798  DTLSHQLYYPQRPLFRTMISD--------------LPRPEYFNGQIAIVAVNVHLGYNQE 843

Query: 1099 DSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLED 920
            DSLVMNRASLERGMFR+EH+RSYK+EV+N E+  KK+K +D V FGK QSKIGRVDSL+D
Sbjct: 844  DSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDD 903

Query: 919  DGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQ 740
            DGFP++GANLQ GDIVIG+ A SGVDHSIKLKHTERGMVQKVV+S+ND+GKNFAVVSLRQ
Sbjct: 904  DGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQ 963

Query: 739  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXX 560
            VR+PCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQ     
Sbjct: 964  VRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 1023

Query: 559  XXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPT 380
                      L++ATPFST SV+ I  QLHR GFSRWG ERVY+GRTGE + SLIFMGPT
Sbjct: 1024 LGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPT 1083

Query: 379  FYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHER 200
            FYQRL HM+EDKVKFRNTGPVHPLTRQPV+DRKRFGGIKFGEMERDCLIAHGAAANLHER
Sbjct: 1084 FYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHER 1143

Query: 199  LFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLLC 20
            LFTLSDS+ MHICR+C N++NVIQR+V GGRK+RGPYCR+CES E++V+VNVPYGAKLLC
Sbjct: 1144 LFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLC 1203

Query: 19   QELFSM 2
            QELFSM
Sbjct: 1204 QELFSM 1209


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score = 1655 bits (4287), Expect = 0.0
 Identities = 809/1162 (69%), Positives = 950/1162 (81%), Gaps = 9/1162 (0%)
 Frame = -3

Query: 3460 SAMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSF 3281
            ++++ L E +LK FCRKAA SFF +YGL+SHQINSYN+F+K+G+Q+ FDS GE  VEP +
Sbjct: 37   TSLRDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGY 96

Query: 3280 DPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSR 3101
            DPSKKG+G+WRYAS++FG+VTL+ P+FFAG      +G  EH  + PR+ARLQNMTYSSR
Sbjct: 97   DPSKKGEGEWRYASMRFGQVTLDKPSFFAG------NGGDEH-DMFPRHARLQNMTYSSR 149

Query: 3100 IKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSE 2921
            +KV+   QVYT+    SDKFKTG E ++ K VL+D  +D+I GR+PVMVKSDLCWM   E
Sbjct: 150  MKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDEATDIIIGRIPVMVKSDLCWMKGVE 209

Query: 2920 KRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP- 2744
            K DC+FD GGYF+IKGAEK F+AQEQ+CL RLWV+ +  WTVAY+  +KR R+ ++LV  
Sbjct: 210  KGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDM 269

Query: 2743 -KVENIMGADKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASI 2567
             K E+I G +K+L+VYF  TEIPIW+LFFALGVS+D+E+VNLID   ED +I NIL ASI
Sbjct: 270  SKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASI 329

Query: 2566 YDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYM 2387
            +DAD K + FRK  NA+K+++ L+K    PP ES EEC+  YLFP+L   +QKA  L YM
Sbjct: 330  HDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYM 389

Query: 2386 VKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRE 2207
            VKCLL+AY GRRK DNRDD RNK            LK+HI HA + M K++QRDL  DR 
Sbjct: 390  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT 449

Query: 2206 LQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQ 2027
            ++PIE+YLDASI+TNGLSRAFSTGAWSHP+K+ ER+SG+VA + R NPLQ   D+R+TRQ
Sbjct: 450  VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 509

Query: 2026 QVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFR 1847
            QV YTG+VGDARYPHPSHWGKICFLSTPDGENCGLVKNL   GLVST+IL  E + ++  
Sbjct: 510  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL--EPIFEQLF 567

Query: 1846 ECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDK 1667
              GMEKL DD S  L GK+K+F+DGDW+G+CKDS SFVS+LRRKRRR E+P QVEIK+D+
Sbjct: 568  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 627

Query: 1666 HHGEVRIFIDAGRILRPLLVVQNLKKIKDLKG-DFSFQSLLDSGVIEFIGPEEEEDCQTA 1490
               EVRIF+DAGRILRPLLVV+N+ KIK L+G +++FQ+LLD G+IE +G EEEEDC TA
Sbjct: 628  LQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTA 687

Query: 1489 WGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIG 1310
            WGIK+L     D  P+++THCELD SFLLGLSCG+IPFANHDHARRVLYQS+KHS QAIG
Sbjct: 688  WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIG 747

Query: 1309 YSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVA 1130
            + TTNPSIR+DT SHQL+YPQRPLFRT+++DCLGK     +   +LPRPE +NGQ AIVA
Sbjct: 748  FPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH--ILPRPELYNGQNAIVA 805

Query: 1129 VNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQS 950
            VNVHLGYNQEDSLVMNRASLERGMFR+EH+RSYKAEV+N E   K++  DD+V+FGK QS
Sbjct: 806  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS 865

Query: 949  KIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEG 770
            KIGRVDSL+DDGFP++GANLQ GDIVIGK+A SG DHSIKLKHTERGMVQKVVLSSND+G
Sbjct: 866  KIGRVDSLDDDGFPFIGANLQCGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDG 925

Query: 769  KNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSR 590
            KNF+VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSR
Sbjct: 926  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 985

Query: 589  QTPGQ------XXXXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYD 428
            QTPGQ                      +YATPF+TPSV+ IT QLHR GFS+WG ER+YD
Sbjct: 986  QTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYD 1045

Query: 427  GRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 248
            GRTGE V SLIF+GPTFYQRL HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME
Sbjct: 1046 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1105

Query: 247  RDCLIAHGAAANLHERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESV 68
            RDCLIAHGAAANLHERLFTLSDS QMHICRKC NVANVIQR V GGRK+RGPYCR C+S 
Sbjct: 1106 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1165

Query: 67   EDVVRVNVPYGAKLLCQELFSM 2
            +D+V+ NVPYGAKLLCQELFSM
Sbjct: 1166 DDIVKANVPYGAKLLCQELFSM 1187


>gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1184

 Score = 1639 bits (4245), Expect = 0.0
 Identities = 806/1155 (69%), Positives = 943/1155 (81%), Gaps = 3/1155 (0%)
 Frame = -3

Query: 3457 AMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFD 3278
            ++Q L E +L+ FC++AA SFF++YGLISHQ+NSYN F+K+G+Q  FDS GE  +   +D
Sbjct: 28   SVQQLGEEFLRGFCKQAAVSFFKEYGLISHQLNSYNAFIKYGLQNTFDSFGEFLIHSGYD 87

Query: 3277 PSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRI 3098
            PSKKG+GDWR+A ++FGKVT+E PTF+A      V G  E L + PR+ARLQNMTYSSR+
Sbjct: 88   PSKKGEGDWRHARVRFGKVTVERPTFWA------VSGGNE-LNMLPRHARLQNMTYSSRM 140

Query: 3097 KVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEK 2918
            KV   LQVYT    +SDKFKTG E FV++ V+   + D+I GR+PVMV+SDLCWMN  EK
Sbjct: 141  KVNVDLQVYTAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGRIPVMVRSDLCWMNEVEK 200

Query: 2917 RDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP-- 2744
             DC+FD GGYF+IKG EK FIAQEQ+ + RLW++ +  WT+AYR   KR R+ I+LV   
Sbjct: 201  ADCDFDHGGYFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAYRSEVKRNRLIIRLVENS 260

Query: 2743 KVENIMGADKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIY 2564
            KVE I G +K+LTVYF  TEIP+WVLFFALGVS+D+EVVNLID +  DS+I NIL ASI 
Sbjct: 261  KVEYIKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLIDYESNDSSITNILFASIR 320

Query: 2563 DADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 2384
            +AD K   F +  NA+ ++  L+K  + PP+E +EEC+  YLFP L S +QKA  L YMV
Sbjct: 321  NADGKCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLFPTLRSFKQKARFLGYMV 380

Query: 2383 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 2204
            KCLL+AY GR K DNRDD RNK            LK+HI HA R M K++QRDL  DR +
Sbjct: 381  KCLLQAYTGRLKCDNRDDFRNKRLELAGELLERELKVHIAHARRRMAKTLQRDLYADRTV 440

Query: 2203 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 2024
            +PIEHYLDASI+TNGLSRAFSTGAWSHPYK+MER+SGVVA + R NPLQ   D+RKTRQQ
Sbjct: 441  RPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRQQ 500

Query: 2023 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRE 1844
            V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA+ GLVST I+  ES++ +  +
Sbjct: 501  VQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIM--ESIVDKLFD 558

Query: 1843 CGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKH 1664
             GME+L +D  S LDGK K+FL+G+WVG+C+DS SF +++RRKRR  E P+QVEIK+D+H
Sbjct: 559  SGMEELVNDTCSSLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEH 618

Query: 1663 HGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTAW 1487
             GEVRIF D GRILRPLLVV NL +IK  KG+ ++FQ+LL+ G+IE +G EEEEDC+TAW
Sbjct: 619  KGEVRIFSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEEEEDCRTAW 678

Query: 1486 GIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGY 1307
             IK+L T      PV+YTHCELD SFLLGLSCG+IPFANHDHARRVLYQ++KHSQQAIG+
Sbjct: 679  SIKYLLTDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGF 738

Query: 1306 STTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAV 1127
            STTNP+IR+DT SHQLYYPQRPLFRT+ +DCLGK      QK +LP+PE +NGQ AIVAV
Sbjct: 739  STTNPNIRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHPLGQKGVLPKPELYNGQNAIVAV 798

Query: 1126 NVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSK 947
            NVHLGYNQEDSLVMNR+SLERGMFR+EHVRSYKAEV+N E   K++K +D+V+FGK QSK
Sbjct: 799  NVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAEVDNKEIQDKRRKSEDIVNFGKIQSK 858

Query: 946  IGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGK 767
            IGRVDSL+DDGFPYVGANLQ GDIVIG+ A SG DHSIKLKHTERGMVQKVVLSSND+GK
Sbjct: 859  IGRVDSLDDDGFPYVGANLQCGDIVIGRCAESGADHSIKLKHTERGMVQKVVLSSNDDGK 918

Query: 766  NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ 587
            N+AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQ
Sbjct: 919  NYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTTQGIVPDIVINPHAFPSRQ 978

Query: 586  TPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKV 407
            TPGQ               +KYATPFST SV+ IT QLHR GFSRWG+ERVY+GRTGE V
Sbjct: 979  TPGQLLEAALGKGIACGGSMKYATPFSTISVDAITEQLHRAGFSRWGNERVYNGRTGEMV 1038

Query: 406  HSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 227
             SLIFMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKR+GGIKFGEMERDCLIAH
Sbjct: 1039 RSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRYGGIKFGEMERDCLIAH 1098

Query: 226  GAAANLHERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVN 47
            GA+ANLHERL TLSDSSQMH+CR C NVANVI+RAV GGRKIRGPYCR C+SV+D+VRVN
Sbjct: 1099 GASANLHERLVTLSDSSQMHVCRNCKNVANVIERAVPGGRKIRGPYCRGCQSVDDIVRVN 1158

Query: 46   VPYGAKLLCQELFSM 2
            VPYGAKLLCQELFSM
Sbjct: 1159 VPYGAKLLCQELFSM 1173


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 1630 bits (4221), Expect = 0.0
 Identities = 813/1127 (72%), Positives = 930/1127 (82%), Gaps = 15/1127 (1%)
 Frame = -3

Query: 3571 LEEAGPSS-KEKFANGSTQMEIXXXXXXXXXXXXDELGS-----------AMQGLDEGYL 3428
            +EE G SS KEK +NGST+M+              +               ++ L E +L
Sbjct: 1    MEEVGCSSGKEKISNGSTRMDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKELGESFL 60

Query: 3427 KMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWR 3248
            K FC+KA+T FFEKYG ISHQINSYNDF+ +GIQ+VFDSVGEI VEP +DPSK+GDGDW+
Sbjct: 61   KNFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGDWK 120

Query: 3247 YASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYT 3068
            +AS+KFGKVTLE P F+AGEKFS V G +E+L L PR+ARLQNMTYS+RI VETH+QVYT
Sbjct: 121  HASVKFGKVTLERPKFWAGEKFS-VGGGKEYLDLLPRHARLQNMTYSARIMVETHVQVYT 179

Query: 3067 KGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGY 2888
            K L RSDKFKTGV+ FVDK    +   DV+ GR+PVMV S+LCWMN  +K DCEFD GGY
Sbjct: 180  KKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGGY 239

Query: 2887 FVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KVENIMGADK 2714
            F+ KGAEKTFIAQEQ+CL RLWV+  PTW V YRP  KRKRVYIKL    K+E+I G +K
Sbjct: 240  FIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGGEK 299

Query: 2713 ILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEGFR 2534
             L+VY  + E+PIWVLFFALGVS+DREVVNLID+DIED+ I NIL+ASI++ADK  E FR
Sbjct: 300  ALSVYI-LAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFR 358

Query: 2533 KEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGR 2354
            K   A+ +++ L+K+ K PP+ESVEECI  YLFPNLS  +QKA  L YMVKCLL ++ GR
Sbjct: 359  KGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGR 418

Query: 2353 RKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDAS 2174
            RKVDNRDD RNK            L+ HIKHAER MVK++QRDL  DR++QPIEHYLDAS
Sbjct: 419  RKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDAS 478

Query: 2173 IITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDA 1994
            IITNGLSRAFSTG W HPYK+MERVSGVVAT+RRTNPLQ TADMRK+RQQV+YTG+VGDA
Sbjct: 479  IITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGDA 538

Query: 1993 RYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDM 1814
            RYPHPSHWGK+CFLSTPDGENCGLVKNLASMGLVST IL+    L+    CGM+KL DD 
Sbjct: 539  RYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP--FLETLFRCGMQKLVDDC 596

Query: 1813 SSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDA 1634
            S+ L GK K+ LDG+WVG+C+DS+ FVSKLRRKRRR EVP+QVE+K+D+  GEVRIF D 
Sbjct: 597  STSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDP 656

Query: 1633 GRILRPLLVVQNLKKIKDLKG-DFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAEL 1457
            GRILRPLLVV NLKKIK LKG D+ FQSLLD+G+IE IGPEEEEDC+TAWG++++  A+ 
Sbjct: 657  GRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKADK 716

Query: 1456 DNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRID 1277
            +NPP +YTHCELD SFLLGLSCG+IPFANHDHARRVLYQSEKHSQQAIG+ST NP+ R+D
Sbjct: 717  ENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNRVD 776

Query: 1276 TNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQED 1097
            TN+HQLYYPQRPLFRT+LAD LGK K + +QK MLPRPE+FNGQCAIVAVNVHLGYNQED
Sbjct: 777  TNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQED 836

Query: 1096 SLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDD 917
            SLVMNRASLERGMFR+EHVRSYKAEV+N EA  KK KI+D V+FGKTQSKIGRVDSL+DD
Sbjct: 837  SLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLDDD 896

Query: 916  GFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQV 737
            GFP++GANLQ+GDI+IGK + SG DHS+KLKHTERGMVQKV+LS+NDEGKNFAVVSLRQV
Sbjct: 897  GFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLRQV 956

Query: 736  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXX 557
            RSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQ      
Sbjct: 957  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 1016

Query: 556  XXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTF 377
                      KYATPFST SV+ I  QL   GF+RWG+ERVY+GRTGE VHSLIFMGPTF
Sbjct: 1017 GKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGPTF 1076

Query: 376  YQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 236
            YQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL
Sbjct: 1077 YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1123


>gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score = 1624 bits (4206), Expect = 0.0
 Identities = 803/1163 (69%), Positives = 946/1163 (81%), Gaps = 7/1163 (0%)
 Frame = -3

Query: 3469 ELGSAMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVE 3290
            +  +++  L EG+LK FC++AA +FF +YGLISHQINSYNDF+K+GIQ+VFDS GEI VE
Sbjct: 38   DYSTSIHDLGEGFLKFFCKEAAIAFFNEYGLISHQINSYNDFIKNGIQRVFDSFGEIIVE 97

Query: 3289 PSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTY 3110
            P +DPSKKG+ +WRYAS+KFGKVTL  P+F+ G      D  +E+ K+ PR+ARLQNM+Y
Sbjct: 98   PGYDPSKKGESEWRYASVKFGKVTLGMPSFWGGS-----DDEKEY-KMLPRHARLQNMSY 151

Query: 3109 SSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMN 2930
            +S++KV   ++VYT+ L  SDKFKTG   ++DK +L+    D+I G +PVMVKSDLCWM 
Sbjct: 152  ASKMKVNITVEVYTQKLVSSDKFKTGKSQYLDKQILSTDTRDIIIGSVPVMVKSDLCWMK 211

Query: 2929 SSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKL 2750
              EK DC+FD GGYF+IKGAEKTFIAQEQ CL RL +T     TVAYR   KR R+ I+L
Sbjct: 212  DFEKGDCDFDHGGYFIIKGAEKTFIAQEQSCLKRLLITNNQGLTVAYRSEVKRHRLIIRL 271

Query: 2749 V--PKVENIMGADKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILI 2576
            V   K+ENI G +K+LTVYF  TEIP+W+ FFALGVS+DREV+NLID D ED++I+NIL 
Sbjct: 272  VGISKLENIEGVEKVLTVYFMSTEIPVWIWFFALGVSSDREVMNLIDYDSEDASISNILF 331

Query: 2575 ASIYDADKKYE----GFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQK 2408
            ASI DADK  +    GFR+  NA+K+++++++    PP ES+EECI  YLFPNL   +QK
Sbjct: 332  ASIRDADKLNDKVDGGFRRGKNALKYVDEVIRKTAFPPGESMEECISLYLFPNLKGLKQK 391

Query: 2407 ACLLAYMVKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQR 2228
            A  L YMVK LL+AY GRRK DNRDD RNK            LK HI HA R M K++QR
Sbjct: 392  ARFLGYMVKSLLQAYAGRRKCDNRDDFRNKRLDLAGELLERELKAHIGHARRRMAKALQR 451

Query: 2227 DLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATA 2048
            DL  DR ++PIEHYLDASI+TNG+SRAFSTGAW HP+K+MER+SGVVAT+ R NPLQ   
Sbjct: 452  DLYGDRAVRPIEHYLDASIVTNGISRAFSTGAWCHPFKRMERMSGVVATVGRANPLQTMV 511

Query: 2047 DMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQE 1868
            DMRKTRQQV YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA+ GLVST +L  E
Sbjct: 512  DMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNVL--E 569

Query: 1867 SLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQ 1688
            SL+ +   CGMEKL DD  + L GK K+FL+GDWVG+C+DS SFV +LRR RRR ++P+Q
Sbjct: 570  SLIPQLLTCGMEKLVDDTFTSLRGKDKVFLNGDWVGVCEDSLSFVLELRRMRRRKKLPHQ 629

Query: 1687 VEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEE 1511
            VEIK+D H GEVRIF DAGRILRPLLVV+NL K+K  KG   SFQ  LD+G+IE IG EE
Sbjct: 630  VEIKRDVHQGEVRIFSDAGRILRPLLVVENLNKVKASKGGKSSFQYFLDNGIIELIGAEE 689

Query: 1510 EEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEK 1331
            EEDC TAWGIK+LF  +      ++THCELD SFLLGLSCG+IP+ANHDHARRVLYQ++K
Sbjct: 690  EEDCSTAWGIKYLFMEDKGKSATKFTHCELDMSFLLGLSCGIIPYANHDHARRVLYQAQK 749

Query: 1330 HSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFN 1151
            HSQQAIG+STTNP++R+DT SHQL+YPQRPLF+T+ +DCLGK     H + ++P+PE++N
Sbjct: 750  HSQQAIGFSTTNPNLRVDTLSHQLHYPQRPLFQTMTSDCLGKP--GRHNR-IVPKPEYYN 806

Query: 1150 GQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLV 971
            GQ AIVAVNVHLG+NQEDS+VMNRASLERGMFR+EH+RSYKAEV+N E+  K++K DD V
Sbjct: 807  GQNAIVAVNVHLGFNQEDSIVMNRASLERGMFRSEHIRSYKAEVDNKESLDKRRKPDDCV 866

Query: 970  SFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVV 791
            +FGK QSK GRVDSL+DDGFPYVGANLQ+GDI+IG+ + SG DHSIKLKHTERGMVQKV+
Sbjct: 867  NFGKMQSKFGRVDSLDDDGFPYVGANLQSGDIIIGRCSESGADHSIKLKHTERGMVQKVL 926

Query: 790  LSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVIN 611
            LSSND+GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QG+VPDIVIN
Sbjct: 927  LSSNDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVIN 986

Query: 610  PHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVY 431
            PHAFPSRQTPGQ                +YATPFST SV+DIT QLH  GFSRWG+ERVY
Sbjct: 987  PHAFPSRQTPGQLLEAALGKGIACGGSKRYATPFSTLSVDDITDQLHSAGFSRWGNERVY 1046

Query: 430  DGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 251
            +G TG  V SLIFMGPTFYQRL HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM
Sbjct: 1047 NGATGAMVRSLIFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1106

Query: 250  ERDCLIAHGAAANLHERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCES 71
            ERDCLIAHGA+ANLHERLFTLSDSSQMH+C+KC NVA VI R V GGRKIRGP+CR C+S
Sbjct: 1107 ERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVAYVILRTVAGGRKIRGPHCRICDS 1166

Query: 70   VEDVVRVNVPYGAKLLCQELFSM 2
             +D+VRVNVPYGAKLLCQELFSM
Sbjct: 1167 ADDLVRVNVPYGAKLLCQELFSM 1189


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1606 bits (4159), Expect = 0.0
 Identities = 799/1192 (67%), Positives = 945/1192 (79%), Gaps = 4/1192 (0%)
 Frame = -3

Query: 3565 EAGPSSK-EKFANGSTQMEIXXXXXXXXXXXXDELGSAMQGLDEGYLKMFCRKAATSFFE 3389
            + G SSK EK    ST M+I             +  +++  + E  LK FC KAAT FF 
Sbjct: 13   DIGTSSKTEKLFKASTDMDIDFDSDSGSDCDFMDSSTSLTDIGEAKLKDFCNKAATLFFN 72

Query: 3388 KYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVTLEH 3209
            +YGLISHQINSYNDF+ +GIQ+ FDS GE+ VEP +DPSKKG+ +WRYAS+KFGKV LE 
Sbjct: 73   EYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGYDPSKKGENEWRYASVKFGKVALEK 132

Query: 3208 PTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGV 3029
            PTF++G          EH K+ PR+ARLQNMTYSS++KV   ++VYT+ + RSDKFKTG 
Sbjct: 133  PTFWSGA--------DEH-KMLPRHARLQNMTYSSKMKVNVSVEVYTRKVVRSDKFKTGK 183

Query: 3028 ENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQ 2849
            + +VDK VLN  + ++  G LPVMVKSDLCWM ++EK DC+FD GGYF+IKGAEK FIAQ
Sbjct: 184  DQYVDKEVLNTDNRNITIGSLPVMVKSDLCWMKTAEKGDCDFDHGGYFLIKGAEKVFIAQ 243

Query: 2848 EQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLV--PKVENIMGADKILTVYFYVTEIPI 2675
            EQ+CL RLW++    WTV+Y+   KR R+ ++LV    +E++    K LTVYF  TEIP+
Sbjct: 244  EQICLKRLWISNIQGWTVSYKSEIKRNRLIVRLVGLSALEDVKAEKKCLTVYFLSTEIPL 303

Query: 2674 WVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLM 2495
            W+LFFALGV++D+EV++LI     D+ I NI  ASI+DAD+K EGFR+   A++++   +
Sbjct: 304  WILFFALGVTSDKEVIDLIGYGSNDARIVNIFFASIHDADEKTEGFRRGKEALEYVVRQI 363

Query: 2494 KSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDLRNKX 2315
            +  + PP E+ E+    YLFP L S RQKA  L YMVKCLL+AY G+RK +N D  RNK 
Sbjct: 364  RGTRFPPGEN-EDFFLLYLFPTLHSLRQKARFLGYMVKCLLQAYNGQRKCNNWDSFRNKR 422

Query: 2314 XXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTG 2135
                       LK+HI HA R M K++Q+DL  DR+++PIEHYLDASI+TNGLSRAFSTG
Sbjct: 423  FELAKELLERELKVHIAHARRRMAKALQKDLYGDRDVRPIEHYLDASIVTNGLSRAFSTG 482

Query: 2134 AWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICF 1955
            AWSHPYK+MER+SGVVA + R NPLQ   D+RKTR  V YTG+VGDAR+PHPSHWG++CF
Sbjct: 483  AWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRYHVQYTGKVGDARFPHPSHWGRVCF 542

Query: 1954 LSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLD 1775
            LSTPDGENCGLVKNLA+ GLVS  IL  E L+ +    GMEK+ +D  S LD K K+FL+
Sbjct: 543  LSTPDGENCGLVKNLATTGLVSVNIL--EPLIDKLIARGMEKVPEDSHSDLDEKDKVFLN 600

Query: 1774 GDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNL 1595
            G+WVG+C+DS  FV++LRR RRR ++P QVEIK+D+   EVRIF DAGRILRPLLVVQNL
Sbjct: 601  GEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDAGRILRPLLVVQNL 660

Query: 1594 KKIKDLKG-DFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELD 1418
             KI+  KG + +FQSLLD G+IEF+G EEEEDC TAWGIK L +       ++YTHCELD
Sbjct: 661  HKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSGVDGKQSLKYTHCELD 720

Query: 1417 SSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPL 1238
             SFLLGLSCG+IPFANHDHARRVLYQ++KHSQQAIG+ TTNP+IR+DT SHQLYYPQRPL
Sbjct: 721  MSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPNIRVDTLSHQLYYPQRPL 780

Query: 1237 FRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGM 1058
            FRT+ +DCLGK   +     ++P+PE +NGQ AIVAVNVHLGYNQEDSLVMNRASLERGM
Sbjct: 781  FRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 840

Query: 1057 FRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGD 878
            FR+EH+RSYKA+V+N E   K++K DD V+FGK  SKIGRVDSL+DDGFP++GANLQ+GD
Sbjct: 841  FRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKIGRVDSLDDDGFPFIGANLQSGD 900

Query: 877  IVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMH 698
            IVIG+ A SG DHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMH
Sbjct: 901  IVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMH 960

Query: 697  GQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYA 518
            GQKGVLGFLESQENFPFT+QGIVPDIVINPH+FPSRQTPGQ               +KYA
Sbjct: 961  GQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEAALGKGIACGGSMKYA 1020

Query: 517  TPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVK 338
            TPFST SVE IT QLHR GFSRWG+ERVY+GRTGE V SLIFMGPTFYQRL HM+EDKVK
Sbjct: 1021 TPFSTLSVEAITNQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDKVK 1080

Query: 337  FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICR 158
            FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANLHERLFTLSDSSQMHIC+
Sbjct: 1081 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICQ 1140

Query: 157  KCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLLCQELFSM 2
            KC NVANVIQRAV GGRKIRGPYCR CESV+++V+VNVPYGAKLLCQELFSM
Sbjct: 1141 KCKNVANVIQRAVPGGRKIRGPYCRVCESVDEIVKVNVPYGAKLLCQELFSM 1192


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1181

 Score = 1606 bits (4158), Expect = 0.0
 Identities = 794/1195 (66%), Positives = 947/1195 (79%), Gaps = 3/1195 (0%)
 Frame = -3

Query: 3577 DFLEEAGPSSKEKFANGSTQMEIXXXXXXXXXXXXDELGSAMQGLDEGYLKMFCRKAATS 3398
            D++E+ GPSSK +  +    M++            +ELG          L+ FC+KAA+ 
Sbjct: 6    DYMEDVGPSSKGEVDD----MDMDMDEDLMDTTNLNELGKET-------LQSFCKKAASL 54

Query: 3397 FFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVT 3218
            FF++YGLISHQINSYN F+  G+Q+VFDS GE+ VEP +D SK+ DG+WR AS++FGKVT
Sbjct: 55   FFDEYGLISHQINSYNAFINSGLQRVFDSFGEVAVEPGYDSSKQKDGEWRRASVRFGKVT 114

Query: 3217 LEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFK 3038
            L+ P+F+ G    +     EH  + PR+ARLQNMTYS+R+K+  ++QVYT+ + RSDKFK
Sbjct: 115  LDRPSFWGGTSSDA-----EH-NMFPRHARLQNMTYSARMKIHVNVQVYTQTVGRSDKFK 168

Query: 3037 TGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTF 2858
            TG++  V K V++  + ++I GR+PVMVKSDLCW+ + EK DC+FD GGYF+IKGAEK F
Sbjct: 169  TGIDKVVQKNVVHTENREIIIGRIPVMVKSDLCWLTTVEKGDCDFDHGGYFLIKGAEKVF 228

Query: 2857 IAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KVENIMGADKILTVYFYVTE 2684
            IAQEQ+C+ RLW++ +  WTV+Y+   KR R+ ++LV   K+E I G  K L VYF  TE
Sbjct: 229  IAQEQICMKRLWISNSQGWTVSYKSEVKRNRLIVRLVELSKLEYIKGEKKGLCVYFLSTE 288

Query: 2683 IPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIE 2504
            IP+W+LFFALGV +D+EV++LID    D++I NI  ASI+DAD+K E FR+E  A+ +++
Sbjct: 289  IPLWILFFALGVRSDKEVIDLIDYASNDASIVNIFFASIHDADEKCEHFRREDRALDYVD 348

Query: 2503 DLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDLR 2324
             L+K  + PPKES+E+ I  YLFP L+S R KA  L YMVKCLLEAY G RK DNRD  R
Sbjct: 349  KLLKKTRFPPKESIEDAISAYLFPRLNSRRHKARFLGYMVKCLLEAYTGHRKCDNRDSFR 408

Query: 2323 NKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAF 2144
            NK            LK+H+ HA R M K++QRDL  DR++ PIEHYLDASI+TNGL+RAF
Sbjct: 409  NKRFELASELLERELKVHVSHALRRMTKALQRDLYGDRDVHPIEHYLDASIVTNGLTRAF 468

Query: 2143 STGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGK 1964
            STGAW HP+K MERVSGVV  + R NPLQ   D+RKTRQQV YTG+VGDARYPHPSHWG+
Sbjct: 469  STGAWCHPFKWMERVSGVVGNLGRANPLQTMIDLRKTRQQVLYTGKVGDARYPHPSHWGR 528

Query: 1963 ICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKI 1784
            +CFLSTPDGENCGLVKNLA  G+VST I   ESL+ +  + GMEKL DD  + LDGK+K+
Sbjct: 529  VCFLSTPDGENCGLVKNLAVTGVVSTNI--SESLVDKLFDSGMEKLVDDTYTKLDGKHKV 586

Query: 1783 FLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVV 1604
            FL+G+WVG+C+DS  FV +LR  RRR E+PYQVEIK+D+   EVRIF DAGRILRPLLVV
Sbjct: 587  FLNGEWVGVCEDSCLFVGELRSMRRRRELPYQVEIKRDEQQREVRIFSDAGRILRPLLVV 646

Query: 1603 QNLKKIKDLK-GDFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHC 1427
            +NL KIK  K G++ F SLLD G+IEFIG EEEEDC TAWGIK L        P++Y+HC
Sbjct: 647  ENLDKIKAFKGGNYIFTSLLDKGIIEFIGTEEEEDCCTAWGIKFLLADIEGKQPMKYSHC 706

Query: 1426 ELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQ 1247
            ELD SFLLGLSCG+IPFANHDHARRVLYQ++KHSQQAIG+STTNP+IR+DT SHQL+YPQ
Sbjct: 707  ELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLHYPQ 766

Query: 1246 RPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLE 1067
            RPLFRT+++DCL           +LP+PE FNGQ AIVAVNVHLGYNQEDSLVMNRASLE
Sbjct: 767  RPLFRTMISDCL-----------VLPKPELFNGQNAIVAVNVHLGYNQEDSLVMNRASLE 815

Query: 1066 RGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQ 887
            RGMFR+EH+RSYKAEV+N E   K++K +D ++FGK QSKIGRVDSL+DDGFP++GAN+Q
Sbjct: 816  RGMFRSEHIRSYKAEVDNKELTDKRRKSEDSITFGKIQSKIGRVDSLDDDGFPFIGANMQ 875

Query: 886  TGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFS 707
            +GDIVIGK A SG DHS+KLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFS
Sbjct: 876  SGDIVIGKCAESGADHSVKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFS 935

Query: 706  SMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXL 527
            SMHGQKGVLGFLESQENFPFT QG+VPDIVINPHAFPSRQTPGQ                
Sbjct: 936  SMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSK 995

Query: 526  KYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSED 347
            +YATPFST SV+DI  QLHR  FSRWG+ERVY+GRTGE V SLIFMGPTFYQRL HM+ED
Sbjct: 996  RYATPFSTLSVDDIIDQLHRAKFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLVHMAED 1055

Query: 346  KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMH 167
            KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANLHERLFTLSDSS+MH
Sbjct: 1056 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSEMH 1115

Query: 166  ICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLLCQELFSM 2
            IC+KC NVANVIQR V GGRKIRGPYCR CESV+D+V+V+VPYGAKLLCQELFSM
Sbjct: 1116 ICQKCKNVANVIQRGVPGGRKIRGPYCRVCESVDDLVKVSVPYGAKLLCQELFSM 1170


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
            vesca subsp. vesca]
          Length = 1201

 Score = 1602 bits (4148), Expect = 0.0
 Identities = 792/1159 (68%), Positives = 931/1159 (80%), Gaps = 3/1159 (0%)
 Frame = -3

Query: 3469 ELGSAMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVE 3290
            E  + +  L E +L  FC++A+ SFF++YGL+SHQINSYNDFV++GIQ+VFDS GEI VE
Sbjct: 41   EDSTTLHDLGEVFLDEFCKEASVSFFKEYGLLSHQINSYNDFVENGIQRVFDSFGEIVVE 100

Query: 3289 PSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTY 3110
            P+FDPSKKG+ DWR+A++KFGKVTL  P F+ G      D  +E+  L PR+ARLQNMTY
Sbjct: 101  PNFDPSKKGNADWRFAAIKFGKVTLSKPCFWGGS-----DSDKEYNML-PRHARLQNMTY 154

Query: 3109 SSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMN 2930
            S+R+ V   +QVYT+ L  SDKFKTG E  ++KT L+    D+I GR+PVMVKS+LCWM 
Sbjct: 155  SARMSVNITVQVYTQNLVESDKFKTGTEQLLEKTTLSTDSRDIIIGRIPVMVKSNLCWMK 214

Query: 2929 SSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKL 2750
              EK DCEFDQGGYF+I GAEKTFIAQEQ CL RL +T +   TVAYR   KR R+ I+L
Sbjct: 215  GVEKGDCEFDQGGYFIINGAEKTFIAQEQSCLKRLLITNSQGLTVAYRSEVKRHRLIIRL 274

Query: 2749 --VPKVENIMGADKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILI 2576
              + K+EN+ G +K+L+VYF  TEIP+W+ FFALGVS+D+EV++LID  IED++I+NIL 
Sbjct: 275  SGISKLENVEGVEKVLSVYFMSTEIPVWIWFFALGVSSDKEVIDLIDYGIEDASISNILF 334

Query: 2575 ASIYDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLL 2396
            ASI DAD++ + FR+  NA++++E+ +KS   PP ESVE+CI  YLFPN+   +QKA  L
Sbjct: 335  ASIRDADERKDDFRRGNNALRYVENAIKSTTFPPGESVEDCISMYLFPNMRGLKQKARFL 394

Query: 2395 AYMVKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDR 2216
             YMVKCLL+   G RK DNRDD RNK            LK H+ HA R M K++QRDL  
Sbjct: 395  GYMVKCLLQTSIGLRKCDNRDDFRNKRLELAGELLERELKAHVSHARRKMAKALQRDLGG 454

Query: 2215 DRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRK 2036
            D  ++P+EHYLDASI+TNG+SRAFSTGAW HP+K+MER+SGVVA I R NPLQ   DMRK
Sbjct: 455  DHVVRPVEHYLDASIVTNGVSRAFSTGAWCHPFKRMERISGVVANIGRANPLQTMIDMRK 514

Query: 2035 TRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQ 1856
            TRQQV YTG+ GDARYPHPSHWGK+CFLSTPDGENCGLVKNLA+  LVS  I   E +L 
Sbjct: 515  TRQQVQYTGKAGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTALVSINI--SEPILP 572

Query: 1855 RFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIK 1676
            +  +CG+E+L DD  + L GK+K+FL+GDWVGIC DS  FV+KLRR RR  ++P+QVEIK
Sbjct: 573  KLFKCGIEELVDDTYTSLAGKHKVFLNGDWVGICVDSHGFVTKLRRLRRSKKLPHQVEIK 632

Query: 1675 KDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDC 1499
            +D+H GEVRIF DAGRILRPLLVVQ LKKIK  KG+  +FQ  LD G+IEFIG EEEEDC
Sbjct: 633  RDEHKGEVRIFSDAGRILRPLLVVQGLKKIKAAKGEKHTFQDFLDKGIIEFIGAEEEEDC 692

Query: 1498 QTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQ 1319
            +TAW IK+LF  E     V+YTHCELD SFLLGLSCG+IPFANHDHARRVLYQS+KHSQQ
Sbjct: 693  RTAWAIKYLFMEE-QGSVVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSQQ 751

Query: 1318 AIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCA 1139
            AIGYSTTNP++R+DT SH L+YPQRPLFRT++AD LGK          +P+PE+FNGQ A
Sbjct: 752  AIGYSTTNPNLRVDTLSHNLHYPQRPLFRTMIADSLGKPGYPVGHNGFMPKPEYFNGQNA 811

Query: 1138 IVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGK 959
            IVAVNVHLGYNQEDS+VMNRASLERGMFR+EH+RSYKAEVEN  +  K++K D+ V+FGK
Sbjct: 812  IVAVNVHLGYNQEDSIVMNRASLERGMFRSEHIRSYKAEVENKLSLEKRRKPDECVNFGK 871

Query: 958  TQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSN 779
             QSK GRVD+L+DDGFP VGA+LQ+GDI+IG+ + SG DHSIKLKHTERGMVQKVVLSSN
Sbjct: 872  IQSKFGRVDNLDDDGFPCVGASLQSGDIIIGRCSESGTDHSIKLKHTERGMVQKVVLSSN 931

Query: 778  DEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAF 599
            D GKNFAVVSLRQVRSP LGDKFSSMHGQKGVLGFLE QENFPFT QGIVPDIVINPHAF
Sbjct: 932  DAGKNFAVVSLRQVRSPSLGDKFSSMHGQKGVLGFLEYQENFPFTIQGIVPDIVINPHAF 991

Query: 598  PSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRT 419
            PSRQTPGQ                +YATPFST SV+DIT QLHR GFSRWG+ERVY+GRT
Sbjct: 992  PSRQTPGQLLEAALGKGIACGGSKRYATPFSTLSVDDITDQLHRAGFSRWGNERVYNGRT 1051

Query: 418  GEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 239
            GE V  LIFMGPTFYQRL HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC
Sbjct: 1052 GEMVRQLIFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1111

Query: 238  LIAHGAAANLHERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDV 59
            LIAHGA+ANLHERLFTLSDSS M++C+KC N ANVI+R + GGRKIRGPYCR C+S +D+
Sbjct: 1112 LIAHGASANLHERLFTLSDSSLMNVCQKCQNAANVIERKLTGGRKIRGPYCRVCDSADDI 1171

Query: 58   VRVNVPYGAKLLCQELFSM 2
            VRVNVPYGAKLLCQELFSM
Sbjct: 1172 VRVNVPYGAKLLCQELFSM 1190


>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
            arietinum]
          Length = 1199

 Score = 1586 bits (4106), Expect = 0.0
 Identities = 789/1155 (68%), Positives = 924/1155 (80%), Gaps = 4/1155 (0%)
 Frame = -3

Query: 3454 MQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDP 3275
            ++ L +  ++ FC+KA+  FF++YGLISHQINSYN F   G+Q  FDS G++TV P FDP
Sbjct: 44   LKELGDDMVRYFCKKASIMFFDEYGLISHQINSYNQFATSGLQNTFDSFGDLTVTPGFDP 103

Query: 3274 SKKGDGD-WRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRI 3098
            SKKGD + +RYAS+KFGKVTL+ P F+ GE      G  + +K+ PR+ARLQ MTY+S++
Sbjct: 104  SKKGDNEHYRYASVKFGKVTLDRPMFWCGE------GNTQEMKMLPRHARLQRMTYASKM 157

Query: 3097 KVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEK 2918
            KV   +QVY     RSDKFKTG E ++D+ ++ D + ++  GRLPVMVKSDLCWMN  EK
Sbjct: 158  KVNVQVQVYIPKKVRSDKFKTGKEEYIDREIIMDENREITIGRLPVMVKSDLCWMNGVEK 217

Query: 2917 RDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVPK- 2741
             DCEFD GGYF+IKGAEK FIAQEQ+ L RLWVT  P W VAY+   KR R+ +KLV   
Sbjct: 218  GDCEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVTNVPYWAVAYKSQMKRNRMVVKLVENT 277

Query: 2740 -VENIMGADKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIY 2564
             VE I   +K+LTVYF   EIP+W+LFFALGV++D+++V+LID    D  I NIL ASI 
Sbjct: 278  TVEGIKNGEKVLTVYFLSVEIPVWLLFFALGVTSDKQIVDLIDYGEGDGRIQNILFASIR 337

Query: 2563 DADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 2384
            +AD+K E FR+  NA+ +IE+ +K V+ PP ES++EC+  Y+FPN+    +KA  LAYMV
Sbjct: 338  EADEKCEQFRRGKNALLYIEERVKGVQFPPPESIDECLNMYVFPNIKGLNRKARYLAYMV 397

Query: 2383 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 2204
            K LL AY GRRK DNRDD RNK            LK+HI HA + M K++QRDL  DR++
Sbjct: 398  KVLLLAYTGRRKTDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRDV 457

Query: 2203 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 2024
              IEHYLDASIITNGL RAFSTGAW+HPYK+MER+SGVVAT+ RTNPLQ  A++R+TRQQ
Sbjct: 458  HQIEHYLDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQ 517

Query: 2023 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRE 1844
            V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKN+A  GLVST +   ES+L +   
Sbjct: 518  VQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTNV--TESILPQLFA 575

Query: 1843 CGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKH 1664
            CGME+L DD +++L  K K+FL+GDWVG+C DS+SFV++LR +RR+ E+P+QVEIK+D  
Sbjct: 576  CGMEELVDDTTAVLGNKDKVFLNGDWVGVCSDSASFVAELRNRRRKNELPHQVEIKRDPS 635

Query: 1663 HGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTAW 1487
              EVRI  DAGRILRPLLVV NL KIK  K D  SFQSLLD+G+IE IGPEEEEDC+TAW
Sbjct: 636  QEEVRILSDAGRILRPLLVVSNLLKIKGSKSDPKSFQSLLDNGLIELIGPEEEEDCKTAW 695

Query: 1486 GIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGY 1307
            G+ +LF  E     V+YTHCELD SFLLGLSC L+PFANHDHARRVLYQS+KHS QAIG+
Sbjct: 696  GVPYLFGKE-GKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGF 754

Query: 1306 STTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAV 1127
            STTNP IR+D  SHQL+YPQ+PLF+T+ +DCLGK       K +LP+ EF+NGQ AIVAV
Sbjct: 755  STTNPDIRVDALSHQLFYPQKPLFQTMTSDCLGKPGYLGPSK-LLPKSEFYNGQNAIVAV 813

Query: 1126 NVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSK 947
            NVHLGYNQEDSLVMNRASL+RGMFR+EH+RSYKAE EN E+  KK+K +D+V+FGK QSK
Sbjct: 814  NVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAENENKESTEKKRKPEDIVNFGKIQSK 873

Query: 946  IGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGK 767
            IGRVDSL+DDGFP+VGANLQ GDI+IG+ A SG DHSIKLKHTERG VQKVVLSSNDEGK
Sbjct: 874  IGRVDSLDDDGFPFVGANLQIGDIIIGRCADSGADHSIKLKHTERGYVQKVVLSSNDEGK 933

Query: 766  NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ 587
            NFAVVSLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ
Sbjct: 934  NFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ 993

Query: 586  TPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKV 407
            TPGQ               L+ ATPFST SVE IT QLHR GFSRWG+ERVY+GRTGE V
Sbjct: 994  TPGQLLEAALGKGIACVGSLRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEMV 1053

Query: 406  HSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 227
             SLIFMGPTFYQRL HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH
Sbjct: 1054 RSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 1113

Query: 226  GAAANLHERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVN 47
            GA+ANL+ERLFTLSDSSQ+HIC KC NVANVI R V GGRKIRGPYCRFCES +D+V  +
Sbjct: 1114 GASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVAH 1173

Query: 46   VPYGAKLLCQELFSM 2
            VPYGAKLLCQELFSM
Sbjct: 1174 VPYGAKLLCQELFSM 1188


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 1582 bits (4096), Expect = 0.0
 Identities = 773/1155 (66%), Positives = 921/1155 (79%), Gaps = 7/1155 (0%)
 Frame = -3

Query: 3445 LDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKK 3266
            L E +LK FC+K++ +FF +YGLISHQINSYNDF+K+GIQ+ FD  G+I V+P +DPSKK
Sbjct: 43   LGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKK 102

Query: 3265 GDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVET 3086
            GDG+WRYA++KFGKVTL+ P F+ G          +   + PR+ARLQNMTYSSR+K+  
Sbjct: 103  GDGEWRYATVKFGKVTLDKPKFWGGAASG------KEYNMLPRHARLQNMTYSSRMKINI 156

Query: 3085 HLQVYTKGLSRSDKFKTGVENFVDKTVLNDY--HSDVIFGRLPVMVKSDLCWMNSSEKRD 2912
             L++YT+ L  SDKFKTG + +VDK  +     + DV  GRLPVMV SDLCWM   +KRD
Sbjct: 157  SLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKRD 216

Query: 2911 CEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KV 2738
            CEFD+GGYF+IKGAEK FIAQEQ+CL RLW++    WTVAYR   KR R+ I+LV   K 
Sbjct: 217  CEFDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKS 276

Query: 2737 ENIMGADKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASI--Y 2564
            E++   +K+L VYF  TE+P+W+LFFALGVS+D+E+V+LID   +D  + NIL AS+   
Sbjct: 277  EDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREV 336

Query: 2563 DADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 2384
            D D K++ FR+   A+  +++ ++    PP + +E+C+  YLF +L   +QK   L YMV
Sbjct: 337  DNDDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMV 396

Query: 2383 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 2204
            KCLL+AY GRRK DNRDD RNK            LK+HI HA R M K++QRDL  DR++
Sbjct: 397  KCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQV 456

Query: 2203 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 2024
             PIEHYLDASIITNGLSRAFSTGAW+H +K+MER+SGVVAT+ R NPLQ  A++R+TRQQ
Sbjct: 457  HPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQ 516

Query: 2023 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRE 1844
            V+YTG+VGDARYPHPSHWG++CFLSTPDGENCGL+KNL+  GLVS     ++S+      
Sbjct: 517  VAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNT--KKSITPTLFR 574

Query: 1843 CGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKH 1664
            CGME L D+ S+   GKY+IFLDG+WVG+C+DS SFV+ +RRKRRR    +QVE+K+D+ 
Sbjct: 575  CGMENLVDNTSTSFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQ 634

Query: 1663 HGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTAW 1487
              EVRIF DAGRILRPLLVV+NL +I   KG+ ++FQSLLD G+IE IG EEEEDC+ AW
Sbjct: 635  LKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAW 694

Query: 1486 GIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGY 1307
             IKHL     D    +Y+HCELD SFLLGLSCGL+PFANHDHARR L+QS+KHS QAIG+
Sbjct: 695  SIKHLME---DEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGF 751

Query: 1306 STTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAV 1127
            S TN + R+DT SHQL+YPQRPLFRT+ ADCLG          +LP+PEF+NGQ AIVAV
Sbjct: 752  SPTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAV 811

Query: 1126 NVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSK 947
            NVHLGYNQEDSLVMNRASLERGMFR+EH+RSYKAEV+N E+  K++K DD ++FGKTQSK
Sbjct: 812  NVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSK 871

Query: 946  IGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGK 767
            IGRVDSL+DDGFPY+GANLQ+GDIVIG+ A SG DHSIKLKHTE+GMVQKVVLSSND+GK
Sbjct: 872  IGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGK 931

Query: 766  NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ 587
            N+AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQ
Sbjct: 932  NYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ 991

Query: 586  TPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKV 407
            TPGQ               LKYATPFSTPSV+ IT QLHR GFSRWG ERVY+GRTGE +
Sbjct: 992  TPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMM 1051

Query: 406  HSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 227
             SLIFMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH
Sbjct: 1052 RSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 1111

Query: 226  GAAANLHERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVN 47
            GA+ANLHERLFTLSDSSQMH+C+KC NVA+VIQR+V GGRK+RGPYCR CES +D+VRVN
Sbjct: 1112 GASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKMRGPYCRVCESFDDIVRVN 1171

Query: 46   VPYGAKLLCQELFSM 2
            VPYGAKLLCQELFSM
Sbjct: 1172 VPYGAKLLCQELFSM 1186


>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
          Length = 1196

 Score = 1572 bits (4070), Expect = 0.0
 Identities = 778/1196 (65%), Positives = 938/1196 (78%), Gaps = 4/1196 (0%)
 Frame = -3

Query: 3577 DFLEEAGPSSKEKFANGSTQMEIXXXXXXXXXXXXDELGSAMQGLDEGYLKMFCRKAATS 3398
            D  E+   SSK +  +GS  M+I             ELG       E +L+ FC++A+TS
Sbjct: 6    DAKEDVAMSSKGEKFSGSVDMDIDDEEEFNELTSIKELG-------EVFLQNFCKEASTS 58

Query: 3397 FFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVT 3218
            FF +YGLISHQINSYNDF+++G+Q+VFDS G++ VEP +DPSKK   +WRYA ++FGKVT
Sbjct: 59   FFSEYGLISHQINSYNDFIRNGVQKVFDSFGDLIVEPGYDPSKKRQNEWRYALVRFGKVT 118

Query: 3217 LEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFK 3038
            L+ P+F+ G      D  +E+  L PR+ARLQNMTYSSR+KV  H++VYT+ L RSDKFK
Sbjct: 119  LDLPSFWGG-----ADKDKEY-NLLPRHARLQNMTYSSRMKVNVHIEVYTQKLVRSDKFK 172

Query: 3037 TGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTF 2858
            TG E F+DK +++    DV+ GR+PVMVKSDLCWM  +EK DC FD GGYF+IKGAEKTF
Sbjct: 173  TGKEQFLDKEIISTEDKDVMIGRIPVMVKSDLCWMKDAEKGDCYFDHGGYFIIKGAEKTF 232

Query: 2857 IAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVPK-VENIMGADKILTVYFYVTEI 2681
            IAQEQ+C  RLW+T     TVAY+   KR R+ ++L    +E+      +L VYF  TEI
Sbjct: 233  IAQEQICRKRLWITSHQNLTVAYQSEVKRNRLILRLAQSGLEDTTVEKDVLCVYFLSTEI 292

Query: 2680 PIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIED 2501
            P+W+LFFALGVS+D+EVV+LID   +D++I NIL  SI  +D+   GFR++  A+  +E 
Sbjct: 293  PVWILFFALGVSSDKEVVDLIDFPTDDASILNILFPSIQISDEVCAGFRRQKKALGFVEK 352

Query: 2500 LMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDLRN 2321
             +K  + PP+ES EEC+  +LFPNL    QKA  L YMVKCLL+A+ GRRK +N+DD RN
Sbjct: 353  HIKKTQFPPRESAEECLDMFLFPNLRGMLQKARFLGYMVKCLLQAFTGRRKCNNKDDFRN 412

Query: 2320 KXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFS 2141
            K            L+  + HA +   K++QRDL  D+ L+ IE YLDASI+TNGLSRAFS
Sbjct: 413  KRLDLAGELLERELRAQVSHARKRTAKALQRDLYGDKGLRQIEFYLDASIVTNGLSRAFS 472

Query: 2140 TGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKI 1961
            TGAW HP+KK ER+SGVVA + RTNPLQ   DMRKTRQQV YTG+VGDARYPHPSHWGK+
Sbjct: 473  TGAWCHPFKKTERISGVVANVGRTNPLQTVVDMRKTRQQVQYTGKVGDARYPHPSHWGKV 532

Query: 1960 CFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIF 1781
            CFLSTPDGENCGLVKNLA+ GLVS  I   ESL+    + GME L +D  + L  K+K+F
Sbjct: 533  CFLSTPDGENCGLVKNLAATGLVSINIA--ESLISTLCDSGMENLANDTYTPLHEKHKVF 590

Query: 1780 LDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQ 1601
            L+GDW+G+C DS +FV++LRRKRRR E+P+QVEIK+D+ HGEVRIF D+GRILRPLLVV+
Sbjct: 591  LNGDWIGVCADSLAFVTELRRKRRRNELPHQVEIKRDEQHGEVRIFSDSGRILRPLLVVE 650

Query: 1600 NLKKIKDLK-GDFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCE 1424
            NL +IK  K G ++F SLLD G+IE IG EEEEDC+TAWGIK+LF  +    PV YTHCE
Sbjct: 651  NLNRIKPSKEGKYTFHSLLDKGIIELIGAEEEEDCRTAWGIKYLFMED-GGKPVNYTHCE 709

Query: 1423 LDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQR 1244
            LD SFLL +SCG+IPFANHDHARRVLYQ++KHSQQAIG+ TTNP IR+DT SHQL+YPQR
Sbjct: 710  LDMSFLLSVSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPDIRVDTLSHQLHYPQR 769

Query: 1243 PLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLER 1064
            PLF+T+ +DCLGK   +  Q   +P+ E FNGQ AIVAVNVHLGYNQEDS+VMNRASLER
Sbjct: 770  PLFQTMTSDCLGKRGYAPSQNGFIPKFECFNGQNAIVAVNVHLGYNQEDSIVMNRASLER 829

Query: 1063 GMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQT 884
            GMFR+EH+RSYKA+V+N E+  K++K DD  +F K  SK GRVDSL+DDGFP++GANLQ+
Sbjct: 830  GMFRSEHIRSYKADVDNKESTDKRRKPDDCFNFAKIPSKNGRVDSLDDDGFPFIGANLQS 889

Query: 883  GDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSS 704
            GDIVIG+ A SG DHSIKLKHTE+GMVQKVVLSSND+GKNFAVVSLRQVR P LGDKFSS
Sbjct: 890  GDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVSLRQVRQPILGDKFSS 949

Query: 703  MHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQ--XXXXXXXXXXXXXXX 530
            MHGQKGVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQ                 
Sbjct: 950  MHGQKGVLGYLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALAKGIP 1009

Query: 529  LKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSE 350
            L++ATPFSTPSV+ IT QLH+ GFSRWG+ERVY+GRTGE V SLIFMGPTFYQRL HMSE
Sbjct: 1010 LRHATPFSTPSVDAITEQLHKAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLVHMSE 1069

Query: 349  DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQM 170
            DKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHGA+ANLHERLFTLSDSSQM
Sbjct: 1070 DKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGASANLHERLFTLSDSSQM 1129

Query: 169  HICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLLCQELFSM 2
            HIC +C+NVAN+IQR+++GGRK+RGPYCR C+S +D+VRVNVPYGAKLLCQELF+M
Sbjct: 1130 HICHRCHNVANIIQRSLMGGRKVRGPYCRICKSADDIVRVNVPYGAKLLCQELFTM 1185


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1571 bits (4067), Expect = 0.0
 Identities = 778/1156 (67%), Positives = 924/1156 (79%), Gaps = 5/1156 (0%)
 Frame = -3

Query: 3454 MQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDP 3275
            ++ L E  +K +C+KA+  FF++YGLISHQINS+N FV  G+Q  FDS G++ V P FDP
Sbjct: 46   LEELGEDMVKYWCKKASMLFFDEYGLISHQINSFNHFVAIGLQNTFDSFGDLVVTPGFDP 105

Query: 3274 SKKGDGD-WRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRI 3098
            SKKG+ + +RYAS+KFGKV L+ P F+ GE      G  +  K+ PR+AR+Q MTY+S++
Sbjct: 106  SKKGENEHFRYASVKFGKVKLDKPMFWGGE------GNAQEFKMLPRHARIQRMTYASKV 159

Query: 3097 KVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEK 2918
            K++  +QVY     RSDKFKTG E F+D+ ++ +   ++I GRLPVMVKSDLCWM  +EK
Sbjct: 160  KIQVKVQVYVPKKVRSDKFKTGKEEFLDREIMKEDEREIIIGRLPVMVKSDLCWMKDAEK 219

Query: 2917 RDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLV--P 2744
             D EFD GGYF++KGAEKTFIAQEQ+ L RLWV  +P W +AY+   KR R+ IKLV   
Sbjct: 220  DDDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNS 279

Query: 2743 KVENIMGADKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIY 2564
            + E +   D  LTVYF   E+P+WVLFFALGVS+D+E+V+LI    +D  I NIL AS+ 
Sbjct: 280  RSEEVENGDMCLTVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVR 339

Query: 2563 DADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 2384
            DAD+K   FR+  NAV+++E  +KSV+ PP ES++EC++ Y+FP +S   +KA  LAYMV
Sbjct: 340  DADEKCGAFRRVRNAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMV 399

Query: 2383 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 2204
            K LL AY GRRK DNRDD RNK            LK+H+ HA + M K++QRDL  DR++
Sbjct: 400  KGLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHVAHARKRMAKALQRDLYGDRDV 459

Query: 2203 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 2024
            +PIEHYLDASIITNGL RAFSTGAWSHPYK+MER+SGVVA + RTNPLQ  A++R+ RQQ
Sbjct: 460  RPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQ 519

Query: 2023 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQ-QESLLQRFR 1847
            V YTG+VGDARYPHPSHWGK+CFL+TPDGENCGLVKNL+  GLVST +    ES+L +  
Sbjct: 520  VQYTGKVGDARYPHPSHWGKVCFLTTPDGENCGLVKNLSVTGLVSTDVTDVTESILLKLV 579

Query: 1846 ECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDK 1667
            +CGM++L DD S+ L    K+ L+GDWVG+C DSSSFV++LR +RRR E+P+QVEIK+D+
Sbjct: 580  DCGMQELVDDTSTHLGSMDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQ 639

Query: 1666 HHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTA 1490
               EVRI+ DAGRILRPLLVV NL KIK  K D +SFQSLLD GVIE IGPEEEEDC TA
Sbjct: 640  SQHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCTA 699

Query: 1489 WGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIG 1310
            WG+++LF  E     V+YTHCELD SFLLGLSC L+PFANHDHARRVLYQS+KHS QAIG
Sbjct: 700  WGVEYLFGKE-GKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIG 758

Query: 1309 YSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVA 1130
            +STTNP+IR+DT SHQL+YPQ+PLFRT+ +DCLGK   S  Q  + P+ EF+NGQ AIVA
Sbjct: 759  FSTTNPNIRVDTLSHQLHYPQKPLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVA 818

Query: 1129 VNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQS 950
            VNVHLGYNQEDSLVMNRASL+RGMFR+EH+RSYK+E++N E+  KK+K +D+V+F K QS
Sbjct: 819  VNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQS 878

Query: 949  KIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEG 770
            KIGRVDSL+DDGFPYVGANLQ+GDI+IGK A SG D+S+KLKHTERG VQKVVLSSNDEG
Sbjct: 879  KIGRVDSLDDDGFPYVGANLQSGDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEG 938

Query: 769  KNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSR 590
            KNFAVVSLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFT+QGIVPDIVINPHAFPSR
Sbjct: 939  KNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSR 998

Query: 589  QTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEK 410
            QTPGQ               LK ATPFSTPSV+ IT QLHR GFSRWG+ERVY+GRTGE 
Sbjct: 999  QTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEM 1058

Query: 409  VHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 230
            V SLIFMGPTFYQRL HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA
Sbjct: 1059 VRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1118

Query: 229  HGAAANLHERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRV 50
            HGA+ANL+ERLFTLSDSSQ+HIC KC  VANVI R V GGRKIRGPYCR CES +D+V  
Sbjct: 1119 HGASANLYERLFTLSDSSQIHICSKCKKVANVILRPVSGGRKIRGPYCRHCESADDIVVA 1178

Query: 49   NVPYGAKLLCQELFSM 2
            +VPYGAKLLCQELFSM
Sbjct: 1179 HVPYGAKLLCQELFSM 1194


>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1560 bits (4039), Expect = 0.0
 Identities = 777/1159 (67%), Positives = 921/1159 (79%), Gaps = 8/1159 (0%)
 Frame = -3

Query: 3454 MQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDP 3275
            ++ L E  +K +C+KA+  FF +YGLISHQINS+N F+  G+Q+ F+S G++ V P FDP
Sbjct: 43   LEELGEDIVKYWCKKASMLFFNEYGLISHQINSFNHFIHTGLQKTFESFGDLVVTPGFDP 102

Query: 3274 SKKGDGD-WRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRI 3098
            SKKG+ + +RYAS+KFG V L+ P F+ GE      G  +  K+ PR+AR+Q MTY+S++
Sbjct: 103  SKKGENEHFRYASVKFGNVKLDKPMFWGGE------GNAQEFKMLPRHARIQRMTYASKV 156

Query: 3097 KVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEK 2918
            K++  +QVY     RSDKFKTG   F+D+ V+ +   ++I GRLPVMVKSDLCWM  +EK
Sbjct: 157  KIQVKVQVYVPKKVRSDKFKTGKAEFLDREVMKEDEREIIIGRLPVMVKSDLCWMKEAEK 216

Query: 2917 RDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLV--P 2744
             D EFD GGYF++KGAEKTFIAQEQ+ L RLWV  +P W +AY+   KR R+ IKLV   
Sbjct: 217  EDDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNS 276

Query: 2743 KVENIMGADKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIY 2564
            + E +   D  L VYF   E+P+WVLFFALGVS+D+E+V+LI    +D  I NIL AS+ 
Sbjct: 277  RGEEVENGDMSLAVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVR 336

Query: 2563 DADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 2384
            DAD+K   FR+  +AV+++E  +KSV+ PP ES++EC++ Y+FP +S   +KA  LAYMV
Sbjct: 337  DADEKCGAFRRGRHAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMV 396

Query: 2383 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 2204
            K LL AY GRRK DNRDD RNK            LK+HI HA + M K++QRDL  DR++
Sbjct: 397  KGLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHIAHARKRMAKALQRDLYGDRDV 456

Query: 2203 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 2024
            +PIEHYLDASIITNGL RAFSTGAWSHPYK+MER+SGVVA + RTNPLQ  A++R+ RQQ
Sbjct: 457  RPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQ 516

Query: 2023 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTI-LQQESLLQRFR 1847
            V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA  GLVST +    E +L +  
Sbjct: 517  VQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTDVSAVSEYILPKLL 576

Query: 1846 ECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDK 1667
            +CGME+L DD S+ L  K K+ L+GDWVG+C DSSSFV++LR +RRR E+P+QVEIK+D+
Sbjct: 577  DCGMEELVDDTSTHLGNKDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQ 636

Query: 1666 HHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGDF-SFQSLLDSGVIEFIGPEEEEDCQTA 1490
               EVRI+ DAGRILRPLLVV NL KIK  K D  SFQSLLD GVIE IGPEEEEDC TA
Sbjct: 637  SQHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDCNSFQSLLDKGVIELIGPEEEEDCCTA 696

Query: 1489 WGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIG 1310
            WG+++LF  E     V+YTHCELD SFLLGLSC L+PFANHDHARRVLYQS+KHS QAIG
Sbjct: 697  WGVEYLFGKE-GKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIG 755

Query: 1309 YSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWML---PRPEFFNGQCA 1139
            +STTNP+IR+DT SHQL+YPQ+PLFRT+ +DCLGK   S  Q  +    P+ EF+NGQ A
Sbjct: 756  FSTTNPNIRVDTLSHQLHYPQKPLFRTMASDCLGKPDNSLGQNKISKIPPKAEFYNGQNA 815

Query: 1138 IVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGK 959
            IVAVNVHLGYNQEDSLVMNRASL+RGMFR+EH+RSYK+E++N E+  KK+K +D+V+F K
Sbjct: 816  IVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAK 875

Query: 958  TQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSN 779
             QSKIGRVDSL+DDGFPYVGANLQ+GDI+IGK A SG D+S+KLKHTERG VQKVVLSSN
Sbjct: 876  LQSKIGRVDSLDDDGFPYVGANLQSGDIIIGKGAESGADNSVKLKHTERGYVQKVVLSSN 935

Query: 778  DEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAF 599
            DEGKNFAVVSLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFT+QGIVPDIVINPHAF
Sbjct: 936  DEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAF 995

Query: 598  PSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRT 419
            PSRQTPGQ               L+ ATPFSTPSV+ IT QLHR GFSRWG+ERVY+GRT
Sbjct: 996  PSRQTPGQLLEAALGKGIACGGILRQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRT 1055

Query: 418  GEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 239
            GE V SLIFMGPTFYQRL HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC
Sbjct: 1056 GEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1115

Query: 238  LIAHGAAANLHERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDV 59
            LIAHGA+ANL+ERLFTLSDSSQ+HIC KC NVANVI R V GGRKIRGPYCR CES +D+
Sbjct: 1116 LIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRHCESADDI 1175

Query: 58   VRVNVPYGAKLLCQELFSM 2
            V  +VPYGAKLLCQELFSM
Sbjct: 1176 VVAHVPYGAKLLCQELFSM 1194


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score = 1552 bits (4019), Expect = 0.0
 Identities = 761/1009 (75%), Positives = 857/1009 (84%), Gaps = 2/1009 (0%)
 Frame = -3

Query: 3022 FVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQ 2843
            +VDK  +++ + DVI GR+PVM+KSDLCWMN  EK DC+FD GGYF+IKGAEKTFIAQEQ
Sbjct: 2    YVDKDPISEDNRDVIIGRIPVMLKSDLCWMNGVEKSDCDFDHGGYFLIKGAEKTFIAQEQ 61

Query: 2842 MCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP-KVENIMGADKILTVYFYVTEIPIWVL 2666
            +CL RLWV+ +P+WTVAYR VSKRKRVYIKL P K E+I G +K+L+VYF   E PIW+L
Sbjct: 62   ICLKRLWVSNSPSWTVAYRDVSKRKRVYIKLEPPKREHIRGGEKVLSVYFSAVEFPIWIL 121

Query: 2665 FFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSV 2486
            FFALG S+D+EVVNLID D EDS I N+LIASIYDAD+  +GFR+  NA+  I   +++ 
Sbjct: 122  FFALGASSDKEVVNLIDCDGEDSRIVNVLIASIYDADENCKGFRRGRNAINDIMKKIENC 181

Query: 2485 KSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDLRNKXXXX 2306
            K PP+ES+E  + NYLFPNLS  RQKA  L YMVKCLL+AY GRRK+DNRDD RNK    
Sbjct: 182  KFPPQESIEAFLSNYLFPNLSGFRQKARFLGYMVKCLLQAYTGRRKIDNRDDFRNKRLEL 241

Query: 2305 XXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWS 2126
                    L++H+KHAER MVK++QRDL  +R +  IEHYLDASIITNGLSRAFSTGAWS
Sbjct: 242  AGELLERELRVHVKHAERRMVKAMQRDLYGERVIHAIEHYLDASIITNGLSRAFSTGAWS 301

Query: 2125 HPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLST 1946
            HPYKKMER+SGVVAT+RRTNPLQ  ADMRKTRQQVSYTG+VGDARYPHPSHWGKICFLST
Sbjct: 302  HPYKKMERISGVVATLRRTNPLQTIADMRKTRQQVSYTGKVGDARYPHPSHWGKICFLST 361

Query: 1945 PDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDW 1766
            PDGENCGLVKNLA  GLVST I  +E  L +  + GMEKL DD S+LL GK K+FLDG+W
Sbjct: 362  PDGENCGLVKNLAITGLVSTNI--EEHFLDKLLDSGMEKLVDDTSTLLSGKVKVFLDGNW 419

Query: 1765 VGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKI 1586
            VG+C DS SFV+ LRRKRRR EVP+QVEIK+D+ H EVR+F DAGRILRPLLVV+NL KI
Sbjct: 420  VGVCGDSVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDAGRILRPLLVVENLGKI 479

Query: 1585 KDLKG-DFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSF 1409
            K  KG D+SFQSLLD GVIEFIG EEEEDC+TAWGI +LF        V+YTHCELD SF
Sbjct: 480  KASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAWGINYLFMENEAKATVKYTHCELDMSF 539

Query: 1408 LLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRT 1229
            LLGLS  +IPFANHDHARRVLYQSEKHSQQA+G++TTNP+IR+DTN+HQLYYPQRPLFRT
Sbjct: 540  LLGLSAAIIPFANHDHARRVLYQSEKHSQQAMGFNTTNPNIRVDTNTHQLYYPQRPLFRT 599

Query: 1228 ILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRT 1049
            +++DCLGK         ++PR E+FNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFR+
Sbjct: 600  MVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 659

Query: 1048 EHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVI 869
            EH+RSYKA+V+N E+ GKK K +D V+FGK QSKIGRVDSL+DDGFP++GANLQ GDIV+
Sbjct: 660  EHIRSYKADVDNKESVGKKPKFEDSVNFGKVQSKIGRVDSLDDDGFPFIGANLQNGDIVV 719

Query: 868  GKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQK 689
            G+ A SG DHSIKLKHTERGMVQKVVLS+NDEGKNFAVVSLRQVR+PCLGDKFSSMHGQK
Sbjct: 720  GRCAESGADHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQK 779

Query: 688  GVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPF 509
            GVLGFLESQENFPFT QGIVPDIV+NPHAFPSRQTPGQ                KYATPF
Sbjct: 780  GVLGFLESQENFPFTIQGIVPDIVVNPHAFPSRQTPGQLLEAALGKGIACGGLQKYATPF 839

Query: 508  STPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRN 329
            ST SV+ +T QLHR GFSRWG ERVY+GRTGE +HSL+FMGPTFYQRLTHMSEDKVKFRN
Sbjct: 840  STLSVDAVTDQLHRAGFSRWGSERVYNGRTGEMIHSLVFMGPTFYQRLTHMSEDKVKFRN 899

Query: 328  TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKCN 149
            TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKCN
Sbjct: 900  TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKCN 959

Query: 148  NVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLLCQELFSM 2
            N+ANVIQRAV GGRKIRGPYCRFCESVE++VRVNVPYGAKLL QELFSM
Sbjct: 960  NIANVIQRAVPGGRKIRGPYCRFCESVEEIVRVNVPYGAKLLAQELFSM 1008