BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia23_contig00003027
         (1054 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   254   5e-65
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...   245   2e-62
emb|CAN60263.1| hypothetical protein VITISV_026496 [Vitis vinifera]   245   2e-62
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi...   243   7e-62
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]         243   1e-61
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t...   241   3e-61
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   241   3e-61
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   238   3e-60
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi...   238   4e-60
emb|CAH66031.1| H0515C11.7 [Oryza sativa Indica Group]                236   1e-59
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]          236   1e-59
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   234   4e-59
gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposo...   233   7e-59
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   233   7e-59
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        233   1e-58
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   233   1e-58
emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]   232   2e-58
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           232   2e-58
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        232   2e-58
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi...   232   2e-58

>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  254 bits (648), Expect = 5e-65
 Identities = 120/217 (55%), Positives = 163/217 (75%)
 Frame = +1

Query: 4    VPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLKF 183
            VPYS+A+GS+MY M+ TRPD+AY++  +SRYMS PG +HW AVKW++RYLK + + +L F
Sbjct: 1135 VPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKWVMRYLKGAQDLNLVF 1194

Query: 184  AKCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYIV 363
             K KD   + GY DSNYA D D R+S + YVFT+ G+ +SWK+ LQ +VA+STTE+EYI 
Sbjct: 1195 TKEKD-FTVTGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAEYIA 1253

Query: 364  VTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRDI 543
            + EA KEA+W+KGL+ ++G   D V ++ DSQS I L KN V+H+RTKHIDVRF+YIRD+
Sbjct: 1254 LAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQSAICLSKNSVYHERTKHIDVRFNYIRDV 1313

Query: 544  VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
            V  G V++ KI +  NP D  TKC+PV+KF + L +L
Sbjct: 1314 VESGDVDVLKIHTSRNPVDALTKCIPVNKFKSALGVL 1350


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  245 bits (626), Expect = 2e-62
 Identities = 119/217 (54%), Positives = 159/217 (73%)
 Frame = +1

Query: 4    VPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLKF 183
            VPY NAIGS+MY M+ +RPD+AY V  +SR+MS P   HW AVKW++RY+K + +  L+F
Sbjct: 1122 VPYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHWQAVKWVMRYMKGTQDTCLRF 1181

Query: 184  AKCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYIV 363
             K  D  +++GY DS+YA D D R+S T +VFT  G+ ISWKS LQ +VALSTTE+EY+ 
Sbjct: 1182 KK-DDKFEIRGYCDSDYATDLDRRRSITGFVFTAGGNTISWKSGLQRVVALSTTEAEYMA 1240

Query: 364  VTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRDI 543
            + EA+KEA+WL+GL +E+GF  D V V  DSQS I L KN V H+RTKHIDVR+H+IR+ 
Sbjct: 1241 LAEAVKEAIWLRGLAAEMGFEQDAVEVMCDSQSAIALSKNSVHHERTKHIDVRYHFIREK 1300

Query: 544  VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
            +A G + + KI + +NPAD+ TK +PVSK    LK+L
Sbjct: 1301 IADGEIQVVKISTTWNPADIFTKTVPVSKLQEALKLL 1337


>emb|CAN60263.1| hypothetical protein VITISV_026496 [Vitis vinifera]
          Length = 1842

 Score =  245 bits (626), Expect = 2e-62
 Identities = 123/219 (56%), Positives = 158/219 (72%), Gaps = 1/219 (0%)
 Frame = +1

Query: 1    NVPYSNAIGSVMYLMVSTRP-DIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSL 177
            NV  +   G +   ++ TRP DIA+S+S LSR+M+NPG  HWN VKWLLRY++ SL   L
Sbjct: 1624 NVKTAILHGDLEEKILMTRPXDIAHSISVLSRFMANPGREHWNGVKWLLRYVRGSLGVGL 1683

Query: 178  KFAKCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEY 357
            KF   K+G  + GYVD +YA D D R+STTSY+FTL G  ++WKSQLQ IVALST E EY
Sbjct: 1684 KFGVSKEGASIIGYVDLDYAGDLDKRRSTTSYIFTLFGGPVNWKSQLQSIVALSTXEVEY 1743

Query: 358  IVVTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIR 537
            I  T+A+KE +WL+GL+ E+G L+  V +FSDSQS IQLCKN VFH+RTKH++VR+H+IR
Sbjct: 1744 ITTTKAMKETLWLQGLVKELGVLNSVVEIFSDSQSTIQLCKNXVFHERTKHVNVRYHFIR 1803

Query: 538  DIVAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
            +IV+   + LEKI    NP DM TK LPV KF   L ++
Sbjct: 1804 EIVSSRKMKLEKISLADNPIDMATKVLPVRKFXYYLDLV 1842



 Score = 57.8 bits (138), Expect = 7e-06
 Identities = 32/91 (35%), Positives = 53/91 (58%)
 Frame = +1

Query: 376  LKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRDIVAKG 555
            L E ++++  +  I    +  V +SDSQ+ I   K+P +H+RTKHID + ++IRDI+A+ 
Sbjct: 1139 LNEEIYMEQPVGFIIQGQERKVFYSDSQATIAYVKDPKYHERTKHIDTKNNFIRDIIARN 1198

Query: 556  LVNLEKIPSEFNPADMGTKCLPVSKFLTCLK 648
             V L+ +P+    AD  TK +    F   +K
Sbjct: 1199 EVILKYLPTXEMVADPFTKSISRDMFXIHVK 1229


>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  243 bits (621), Expect = 7e-62
 Identities = 120/218 (55%), Positives = 159/218 (72%)
 Frame = +1

Query: 1    NVPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLK 180
            ++PYS+A+GS+MY M+ TRPD+AY V  +SRYMS P   HW  VKW+LRY+K SL   L+
Sbjct: 1112 SIPYSSAVGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLGVKWVLRYIKGSLGTKLQ 1171

Query: 181  FAKCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYI 360
            + +  D  K+ GY D+++A  +D R+S T  VFTL GS ISWKS  Q +VALSTTE+EY+
Sbjct: 1172 YKRSSD-FKVVGYCDADHAACKDRRRSITGLVFTLGGSTISWKSGQQRVVALSTTEAEYM 1230

Query: 361  VVTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRD 540
             +TEA+KEAVW+KGL+ E G+   +V +F DSQS I L KN V H+RTKHIDVR+ YIRD
Sbjct: 1231 SLTEAVKEAVWMKGLLKEFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVRYQYIRD 1290

Query: 541  IVAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
            I+A G  ++ KI +E NPAD+ TK +PV+KF   L +L
Sbjct: 1291 IIANGDGDVVKIDTEKNPADIFTKIVPVNKFQAALTLL 1328


>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1363

 Score =  243 bits (619), Expect = 1e-61
 Identities = 119/218 (54%), Positives = 158/218 (72%)
 Frame = +1

Query: 1    NVPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLK 180
            +VPYS+A+GS+MY M+ TRPD+AY V  +SR+MS P   HW  VKW+LRY+K +++  L 
Sbjct: 1142 SVPYSSAVGSIMYAMIGTRPDLAYPVGVVSRFMSQPAKEHWLGVKWVLRYIKGTVDTRLC 1201

Query: 181  FAKCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYI 360
            + +  D   + GY D++YA D D R+S T  VFTL G+ ISWKS LQ +VA S+TE EY+
Sbjct: 1202 YKRNSD-FSICGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSSTECEYM 1260

Query: 361  VVTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRD 540
             +TEA+KEA+WLKGL+ + G+   NV +F DSQS I L KN V H+RTKHIDV+FH+IR+
Sbjct: 1261 SLTEAVKEAIWLKGLLKDFGYEQKNVEIFCDSQSAIALSKNNVHHERTKHIDVKFHFIRE 1320

Query: 541  IVAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
            I+A G V + KI +E NPAD+ TK LPV+KF T L  L
Sbjct: 1321 IIADGKVEVSKISTEKNPADIFTKVLPVNKFQTALDFL 1358


>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
            retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
            reverse transcriptase [Arabidopsis thaliana]
          Length = 587

 Score =  241 bits (616), Expect = 3e-61
 Identities = 113/217 (52%), Positives = 162/217 (74%)
 Frame = +1

Query: 4    VPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLKF 183
            VPY++A+GS+MY M+ TRPD+AY +  +SRYM+ PG IHW AVKW+LRY++ S + +L F
Sbjct: 366  VPYASAVGSIMYAMIGTRPDLAYDICLVSRYMARPGSIHWEAVKWILRYMRGSQDLNLVF 425

Query: 184  AKCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYIV 363
             K K+  ++ GY DS+YA D D R+S + YVFT+ G+ +SWK+ LQ + ALSTTE+E++ 
Sbjct: 426  TKEKE-FRVTGYCDSDYAADLDRRRSVSGYVFTVGGNTVSWKANLQSVTALSTTEAEFMA 484

Query: 364  VTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRDI 543
            +TEA KEA+W+KGL+ ++G   D V ++ DSQS I L KN   H+RTKHIDVR+++IRD+
Sbjct: 485  LTEAAKEALWIKGLMKDLGLEQDKVTLWCDSQSAICLSKNSTHHERTKHIDVRYNFIRDV 544

Query: 544  VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
            V  G V++ KI +  NPAD  TK +PV+KF + L++L
Sbjct: 545  VEAGDVDVLKIHTSRNPADALTKSIPVNKFQSALELL 581


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  241 bits (616), Expect = 3e-61
 Identities = 117/217 (53%), Positives = 161/217 (74%)
 Frame = +1

Query: 4    VPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLKF 183
            VPY+N IGS+MY M+ TRPD+AYS+  +SR+MS P   HW AVKW+LRY++ +    L F
Sbjct: 1115 VPYANTIGSIMYSMIGTRPDLAYSLGVISRFMSKPLKDHWQAVKWVLRYMRGTEKKKLCF 1174

Query: 184  AKCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYIV 363
             K +D + L+GY DS+Y ++ D R+S T YVFT+ G+ ISWKS+LQ +VA+S+TE+EY+ 
Sbjct: 1175 RKQEDFL-LRGYCDSDYGSNFDTRRSITGYVFTVGGNTISWKSKLQKVVAISSTEAEYMA 1233

Query: 364  VTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRDI 543
            +TEA+KEA+WLKG  +E+G   D V V SDSQS I L KN V H+RTKHID+R H+IRDI
Sbjct: 1234 LTEAVKEALWLKGFAAELGHSQDYVEVHSDSQSAITLAKNSVHHERTKHIDIRLHFIRDI 1293

Query: 544  VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
            +  GL+ + KI +E NPA++ TK +P++KF   L +L
Sbjct: 1294 ICAGLIKVVKIATECNPANIFTKTVPLAKFEGALNML 1330


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  238 bits (607), Expect = 3e-60
 Identities = 113/219 (51%), Positives = 158/219 (72%), Gaps = 1/219 (0%)
 Frame = +1

Query: 4    VPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLKF 183
            +PY++ +GSVMY MV +RPD+AY+VS +SRYMS PG  HW AVKWL +YL  + +  L +
Sbjct: 986  IPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVKWLFQYLAGTRSLGLVY 1045

Query: 184  A-KCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYI 360
                +   +L+G+VD++YA + D RKS T YVFT  G  +SWK+ LQ +VALSTTE+EY+
Sbjct: 1046 GGNSQLETQLQGFVDADYAGNIDTRKSLTGYVFTXFGGAVSWKANLQSVVALSTTEAEYM 1105

Query: 361  VVTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRD 540
             +TEA+KEA+WLKG+  E+      VVV+ D+QS I L KN  FH+R+KHIDVR H++RD
Sbjct: 1106 AMTEAVKEAIWLKGITEELAMYRGKVVVYCDNQSAIHLAKNQSFHERSKHIDVRLHFVRD 1165

Query: 541  IVAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKILN 657
            I+A G + + K+ ++ NP+DM TK L V+KF  CL ++N
Sbjct: 1166 IIAAGEIGVGKVHTKDNPSDMLTKSLNVTKFKHCLNLIN 1204


>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  238 bits (606), Expect = 4e-60
 Identities = 118/218 (54%), Positives = 156/218 (71%)
 Frame = +1

Query: 1    NVPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLK 180
            +VPYS+A+GS+MY M+ TRPD+AY V  +SR+MS P   HW  VKW+LRY+K +L   L 
Sbjct: 1135 SVPYSSAVGSIMYAMLGTRPDLAYPVGIISRFMSQPIKEHWLGVKWVLRYIKGTLKTRLC 1194

Query: 181  FAKCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYI 360
            + K      + GY D++YA D D R+S T  VFTL G+ ISWKS LQ +VA STTESEY+
Sbjct: 1195 YKK-SSSFSIVGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSTTESEYM 1253

Query: 361  VVTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRD 540
             +TEA+KEA+WLKGL+ + G+   +V +F DSQS I L KN V H+RTKHIDV++H+IR+
Sbjct: 1254 SLTEAVKEAIWLKGLLKDFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVKYHFIRE 1313

Query: 541  IVAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
            I++ G V + KI +E NPAD+ TK L VSKF   L +L
Sbjct: 1314 IISDGTVEVLKISTEKNPADIFTKVLAVSKFQAALNLL 1351


>emb|CAH66031.1| H0515C11.7 [Oryza sativa Indica Group]
          Length = 293

 Score =  236 bits (602), Expect = 1e-59
 Identities = 112/217 (51%), Positives = 160/217 (73%)
 Frame = +1

Query: 4   VPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLKF 183
           VPYS+A+GS+MY MV +RPD+++++S +SRYM+NPG  HW A+ W+ RYL+ + +  LKF
Sbjct: 75  VPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMTNPGKEHWKAIHWIFRYLRGTTDACLKF 134

Query: 184 AKCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYIV 363
            +   G  L GYVDS++A D D R+S T YVFT+    +SWK+ LQ IVA STTE+EY+ 
Sbjct: 135 GRTDKG--LVGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPIVAQSTTEAEYMA 192

Query: 364 VTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRDI 543
           + EA KE+VWLKGL +E+  +D  + +F DSQS I L K+ +FH+RTKHID+++HY+RD+
Sbjct: 193 IAEACKESVWLKGLFAELCGVDSCINLFCDSQSAICLTKDQMFHERTKHIDIKYHYVRDV 252

Query: 544 VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
           VA+G + + KI +  NPADM TK +PV+KF  C  ++
Sbjct: 253 VAQGKLKVCKISTHDNPADMMTKPVPVAKFELCSSLV 289


>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
          Length = 297

 Score =  236 bits (602), Expect = 1e-59
 Identities = 114/217 (52%), Positives = 158/217 (72%)
 Frame = +1

Query: 4   VPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLKF 183
           VPY++ +GS++Y MV TRPDI+ +VS +SRYM NPG   W AVKW+LRYL  +++  L F
Sbjct: 76  VPYASVVGSLIYAMVCTRPDISQAVSMVSRYMHNPGKSQWLAVKWILRYLYGTVDVGLLF 135

Query: 184 AKCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYIV 363
            K   G +  GY DS++A D D ++ST+ YVFTL G  +SW+S LQ  +ALSTTE+EYI 
Sbjct: 136 KK-NCGQQCVGYCDSDFAGDLDKQRSTSGYVFTLGGGSVSWRSILQSTIALSTTEAEYIA 194

Query: 364 VTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRDI 543
            TEA+KEA+WLKGL+ ++G + +N+ VF D+QS I L KN  +H RTKHIDV++HY+R+I
Sbjct: 195 ATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQSAIFLAKNQTYHARTKHIDVKYHYVREI 254

Query: 544 VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
           +  G V L+KI ++ NP+DM TK +   KF  CLK++
Sbjct: 255 IEGGDVLLKKIDTKDNPSDMLTKVVSEVKFQHCLKLI 291


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  234 bits (597), Expect = 4e-59
 Identities = 109/217 (50%), Positives = 158/217 (72%)
 Frame = +1

Query: 4    VPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLKF 183
            VPYS+A+GS+MY MV +RPD++Y++S +SRYMSNPG  HW AV+W+ RYL+ +    LKF
Sbjct: 1115 VPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKF 1174

Query: 184  AKCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYIV 363
             +   G  L GYVDS+YA D D R+S T YVFT+    +SW++ LQ +VALSTTE+EY+ 
Sbjct: 1175 GRTDKG--LIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMA 1232

Query: 364  VTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRDI 543
            + EA KE +WLKGL +E+  ++  + +  DSQS I L K+ +FH+RTKHID+++H++RD+
Sbjct: 1233 ICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDV 1292

Query: 544  VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
            + +G + + KI +  NPADM TK +PV+KF  C  ++
Sbjct: 1293 IEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLV 1329


>gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
            notabilis]
          Length = 1822

 Score =  233 bits (595), Expect = 7e-59
 Identities = 112/204 (54%), Positives = 154/204 (75%), Gaps = 1/204 (0%)
 Frame = +1

Query: 4    VPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLKF 183
            +PY++A+ S+MY MV TR ++AYS S +SR+MSN G  HW AVKW+    + + N  L +
Sbjct: 462  IPYASAVDSLMYAMVCTRLNLAYSASLVSRFMSNSGKEHWEAVKWV----QGASNVGLLY 517

Query: 184  AKCK-DGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYI 360
             + + DG KL+GYVD+++A D D R+S + Y+FTL G  +SWK+QLQ +VALSTTE+EYI
Sbjct: 518  KRMRNDGEKLRGYVDADFAGDLDKRRSLSGYIFTLFGCTVSWKAQLQLVVALSTTEAEYI 577

Query: 361  VVTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRD 540
              TE +KEA+WLKGLI E+G + D V VF D+QS I L KN +F+DRTKHID++ H+IRD
Sbjct: 578  AATEGVKEAMWLKGLIGELGIVQDEVEVFCDNQSSILLTKNQMFYDRTKHIDIKLHFIRD 637

Query: 541  IVAKGLVNLEKIPSEFNPADMGTK 612
            I+++G V LEKI ++ NPADMGT+
Sbjct: 638  IISRGTVTLEKIHTDDNPADMGTR 661


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  233 bits (595), Expect = 7e-59
 Identities = 112/217 (51%), Positives = 159/217 (73%)
 Frame = +1

Query: 4    VPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLKF 183
            VPYS+A+GS+MY MV + PD+++++S +SRYM+NPG  HW AV+W+ RYL+ + +  LKF
Sbjct: 1104 VPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKF 1163

Query: 184  AKCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYIV 363
             +   G  L GYVDS++A D D R+S T YVFT+    +SWK+ LQ +VA STTE+EY+ 
Sbjct: 1164 GRIDKG--LVGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPVVAQSTTEAEYMA 1221

Query: 364  VTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRDI 543
            + EA KE+VWLKGL +E+  +D  + +F DSQS I L K+ +FH+RTKHID+++HY+RDI
Sbjct: 1222 IAEACKESVWLKGLFAELCGVDSCINLFCDSQSAICLTKDQMFHERTKHIDIKYHYVRDI 1281

Query: 544  VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
            VA+G + + KI    NPADM TK +PV+KF  C  ++
Sbjct: 1282 VAQGKLKVCKISIHDNPADMMTKPIPVAKFELCSSLV 1318


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  233 bits (594), Expect = 1e-58
 Identities = 110/217 (50%), Positives = 160/217 (73%)
 Frame = +1

Query: 4    VPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLKF 183
            VPYS+A+GS+MY M+ +RPD+++++S +SRYM+NPG  HW  V+W+ RYL  + +  L+F
Sbjct: 963  VPYSSAVGSLMYAMICSRPDLSHALSVVSRYMANPGKEHWKDVQWIFRYLHGTSSACLQF 1022

Query: 184  AKCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYIV 363
             + +DG  L GYVDS++A D D R+S T YVFT+ G  +SWK+ LQ  VALSTTE+EY+ 
Sbjct: 1023 GRSRDG--LVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYMA 1080

Query: 364  VTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRDI 543
            ++EA KEA+WL+GL +E+  +   + +F DSQS I L K+ +FH+RTKHIDVR+H+IR +
Sbjct: 1081 ISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRGV 1140

Query: 544  VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
            +A+G V + KI +  NPADM TK +P +KF  C  ++
Sbjct: 1141 IAEGDVKVCKISTHDNPADMMTKPVPATKFELCSSLV 1177


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  233 bits (593), Expect = 1e-58
 Identities = 108/217 (49%), Positives = 157/217 (72%)
 Frame = +1

Query: 4    VPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLKF 183
            VPYS+A+GS+MY MV +RPD++Y++S +SRYMSNPG  HW  V+W+ RYL+ +    LKF
Sbjct: 1115 VPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKF 1174

Query: 184  AKCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYIV 363
             +   G  L GYVDS+YA D D R+S T YVFT+    +SW++ LQ +VALSTTE+EY+ 
Sbjct: 1175 GRTDKG--LIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMA 1232

Query: 364  VTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRDI 543
            + EA KE +WLKGL +E+  ++  + +  DSQS I L K+ +FH+RTKHID+++H++RD+
Sbjct: 1233 ICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDV 1292

Query: 544  VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
            + +G + + KI +  NPADM TK +PV+KF  C  ++
Sbjct: 1293 IEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLV 1329


>emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]
          Length = 777

 Score =  232 bits (592), Expect = 2e-58
 Identities = 116/218 (53%), Positives = 147/218 (67%)
 Frame = +1

Query: 1    NVPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLK 180
            +VPY+NAI ++M+                   M+NPG  HWN V WLLRY++ SL   LK
Sbjct: 569  SVPYANAIRALMF-------------------MANPGREHWNGVTWLLRYVRGSLGVGLK 609

Query: 181  FAKCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYI 360
            F   K+G  + GYVDS+Y  D D R STT Y+FTL G  +SWKSQLQ IVALSTT++EYI
Sbjct: 610  FGSSKEGDGITGYVDSDYVGDLDKRXSTTGYIFTLFGGPVSWKSQLQSIVALSTTKAEYI 669

Query: 361  VVTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRD 540
              TEA+KEA+WL+GL+ E+  L+  V +F DSQS IQLC NP FH RTKHIDVR+H+IR+
Sbjct: 670  AATEAMKEALWLQGLVKELXVLNSVVEIFLDSQSAIQLCNNPXFHXRTKHIDVRYHFIRE 729

Query: 541  IVAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
             ++ G + LEKI    NPADM TK LPV+KF   L ++
Sbjct: 730  TISSGAMKLEKISXVDNPADMATKVLPVTKFKYSLDLV 767


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  232 bits (592), Expect = 2e-58
 Identities = 108/217 (49%), Positives = 158/217 (72%)
 Frame = +1

Query: 4    VPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLKF 183
            VPYS+A+GS+MY MV +RPD++Y++S +SRYMSNPG  HW A++W+ RYL+ +    LKF
Sbjct: 1117 VPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKF 1176

Query: 184  AKCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYIV 363
             +   G  L GYVDS+YA D D R+S T YVFT+    +SW++ LQ +VALSTTE+EY+ 
Sbjct: 1177 GRTDKG--LIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMA 1234

Query: 364  VTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRDI 543
            + EA KE +WLKGL +E+  ++  + +  DSQS I L K+ +FH+RTKHID+++H++RD+
Sbjct: 1235 ICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDV 1294

Query: 544  VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
            + +G + + KI +  NPADM TK +PV+KF  C  ++
Sbjct: 1295 IEEGKLKVCKICTHDNPADMMTKPIPVAKFELCSSLV 1331


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  232 bits (592), Expect = 2e-58
 Identities = 115/217 (52%), Positives = 155/217 (71%), Gaps = 1/217 (0%)
 Frame = +1

Query: 7    PYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLKFA 186
            PY+ A+GS+MY MV TR DIAY+VS +SRY+S PG +HWNAVKW++RYLK S    L + 
Sbjct: 1111 PYAQAVGSLMYAMVCTRSDIAYAVSVVSRYLSCPGKVHWNAVKWIMRYLKGSSTCGLLYG 1170

Query: 187  KCK-DGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYIV 363
            K K D +++ G+VDS++A D D RKST+ Y+F L    ISWKS LQ   ALS+TE+E+I 
Sbjct: 1171 KTKSDKIEVMGFVDSDFAGDLDRRKSTSRYMFVLNSCLISWKSSLQSGGALSSTEAEFIA 1230

Query: 364  VTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRDI 543
             TEA+KEA+WL+GL++E+      V VF D+Q+ I L KN ++H+RTKHIDV+  +IRD 
Sbjct: 1231 TTEAVKEAMWLRGLLNELWLNQKIVQVFCDNQNAIHLVKNQMYHERTKHIDVKLQFIRDE 1290

Query: 544  VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
            V KG V + KI +  NPAD  TK LP +KF  C+ ++
Sbjct: 1291 VGKGTVVVSKIHTSVNPADALTKSLPTAKFEFCVNLM 1327


>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 838

 Score =  232 bits (591), Expect = 2e-58
 Identities = 113/218 (51%), Positives = 158/218 (72%)
 Frame = +1

Query: 1    NVPYSNAIGSVMYLMVSTRPDIAYSVSCLSRYMSNPGIIHWNAVKWLLRYLKHSLNYSLK 180
            ++PY+NA+GS+MY M+ +RPD+A+ V  +SR+MS P + HW  VKW+LRY+K S++  L+
Sbjct: 617  SIPYANAVGSIMYSMIGSRPDLAHPVGVISRFMSKPLMNHWLGVKWVLRYIKGSIDSRLQ 676

Query: 181  FAKCKDGVKLKGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTTESEYI 360
            + +  D V + GY DS+++ DRD  +STT Y FT+ G+ +SW+S LQ +VALS+TE+EYI
Sbjct: 677  YKREGDFV-VTGYCDSDHSGDRDRSRSTTGYTFTVGGNIVSWRSCLQPVVALSSTEAEYI 735

Query: 361  VVTEALKEAVWLKGLISEIGFLDDNVVVFSDSQSGIQLCKNPVFHDRTKHIDVRFHYIRD 540
             +TEA KEA WLK L++E+GF    V +  DSQS I L KN V H+RTKHI  RFHYIRD
Sbjct: 736  ALTEAAKEAYWLKDLMNELGFKQGAVDIHCDSQSAIALAKNAVHHERTKHIQRRFHYIRD 795

Query: 541  IVAKGLVNLEKIPSEFNPADMGTKCLPVSKFLTCLKIL 654
             +  G V + KI +  NP+D+ TK +PV+KFL+ LK L
Sbjct: 796  AITDGEVKVLKISTVHNPSDIFTKVVPVNKFLSALKKL 833