BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00009039
         (3137 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   443   e-121
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   429   e-117
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...   400   e-108
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]   400   e-108
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   394   e-106
ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624...   393   e-106
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]   392   e-106
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]   391   e-106
emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera]   391   e-105
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...   390   e-105
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   390   e-105
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  390   e-105
gb|AAB82754.1| retrofit [Oryza longistaminata]                        389   e-105
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   388   e-105
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   385   e-104
emb|CCH50966.1| T4.5 [Malus x robusta]                                384   e-103
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   383   e-103
emb|CAN67546.1| hypothetical protein VITISV_027734 [Vitis vinifera]   383   e-103
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...   382   e-103
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   382   e-103

>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  443 bits (1140), Expect = e-121
 Identities = 221/394 (56%), Positives = 285/394 (72%), Gaps = 1/394 (0%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMS 2954
            NG++  E+YM+Q PGF    +  +++VCKLHK+LYGLKQA RAW  KL   LQ FGF+ +
Sbjct: 862  NGELQEEVYMDQPPGFDGKTNQEQKLVCKLHKALYGLKQAPRAWFDKLKISLQQFGFSST 921

Query: 2953 KADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGI 2774
            K+D SLF R +  S +F+L YVDDI+VTGS +  I  +I  L  +FSLKDLG LSYFLGI
Sbjct: 922  KSDQSLFVRFTNCSSLFVLVYVDDIVVTGSSSQEIHELISRLRGLFSLKDLGELSYFLGI 981

Query: 2773 QVDYTPNG-LLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPISDASLYRKI 2597
            +V  T +G L L+Q+KYIQDLL    M GAK L +PM+S   LS   G+PI +   YR +
Sbjct: 982  EVKKTADGGLHLSQKKYIQDLLKKTKMDGAKSLPTPMLSGLKLSAGMGDPIDNVFEYRSV 1041

Query: 2596 VGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLHR 2417
            VG+LQY T+TRP+I++SVNKV Q+MQ PLD+HWKAVKRILRYL GT D G++        
Sbjct: 1042 VGALQYITITRPEIAFSVNKVCQFMQKPLDTHWKAVKRILRYLNGTTDLGIVLKPSETMN 1101

Query: 2416 INTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATCDV 2237
            +  F DADWGSD+DDRRSTSG+CV+ G +LVSWS+KKQ   SRSSTEAEYRS+AS T ++
Sbjct: 1102 LVGFCDADWGSDVDDRRSTSGHCVFLGKSLVSWSSKKQHTTSRSSTEAEYRSLASLTSEM 1161

Query: 2236 FWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQIS 2057
             W+ SLL E+  ++     +W DN+  VSLS NPV HSRTKH ELDL+F+REKV ++++ 
Sbjct: 1162 LWLQSLLSELQTKMTMVPVIWCDNISTVSLSANPVLHSRTKHMELDLYFVREKVMERKLV 1221

Query: 2056 VQHIPGSEQVTDILTKPLTGQFFVRLRNKLNVVS 1955
            V H+P  +QV D+ TKPL+ +FF +LR KL V S
Sbjct: 1222 VNHVPTEDQVADVFTKPLSFRFFDKLREKLTVAS 1255



 Score = 83.2 bits (204), Expect = 7e-13
 Identities = 48/128 (37%), Positives = 69/128 (53%), Gaps = 17/128 (13%)
 Frame = -2

Query: 673 QPRCQICFIPGHSAAKCFHRANLNFV-------PT-------SNNNSFYTQNQSTNHNSN 536
           +P+CQ+C   GH+  +CF+R + NF        PT       + N +  + + + N N  
Sbjct: 180 KPQCQLCNKFGHTVHRCFYRYDPNFHGNMPANGPTPGVLGSGARNGASGSISSAGNVNLT 239

Query: 535 DPHANR---YGSFSANVASTSQDHAQETCWFPDSGATNHLTYDLGNLNLAHDYQGTDRIQ 365
           +  A     Y    A VA+   +  Q  CWFPDSGATNH+T+DLGNLN   +Y G  +I 
Sbjct: 240 EYDAQENQDYSEMEAMVATP--EDLQNCCWFPDSGATNHVTHDLGNLNSGAEYNGNSKIH 297

Query: 364 IGNGSGSK 341
           +GNG+G K
Sbjct: 298 MGNGTGLK 305


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  429 bits (1102), Expect = e-117
 Identities = 210/404 (51%), Positives = 278/404 (68%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMS 2954
            NGD+  E++M+Q  GF+        +VC+LHK+LYGLKQA RAW  KL + L SFGF  +
Sbjct: 1052 NGDLQEEVFMQQPQGFID--EQNPNLVCRLHKALYGLKQAPRAWFEKLHRALLSFGFVSA 1109

Query: 2953 KADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGI 2774
            K+D SLF R + +   ++L YVDDI+V GS   AI ++I  L+S FSLKDLG + YFLGI
Sbjct: 1110 KSDQSLFLRFTPNHITYVLVYVDDILVIGSDTAAITSLIAQLNSEFSLKDLGEVHYFLGI 1169

Query: 2773 QVDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPISDASLYRKIV 2594
            QV +T NGL L+Q KYI+DLL    M   K   +P+ +   L   DG+P+ D   YR  V
Sbjct: 1170 QVSHTNNGLHLSQTKYIRDLLQKTKMVHCKPARTPLPTGLKLRVGDGDPVEDLHGYRSTV 1229

Query: 2593 GSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLHRI 2414
            G+LQY T+TRP++S+SVNKV Q+MQNP + HWK VKRILRYL GT+ HGL   K     +
Sbjct: 1230 GALQYVTITRPELSFSVNKVCQFMQNPTEEHWKVVKRILRYLQGTLQHGLHLKKSSNLDL 1289

Query: 2413 NTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATCDVF 2234
              F DADW SDLDDRRSTSG+CV+ G NL+SW +KKQ +VSRSS E EYRS+A    ++ 
Sbjct: 1290 IGFCDADWASDLDDRRSTSGHCVFLGPNLISWQSKKQHIVSRSSIEIEYRSLAGLVAEIT 1349

Query: 2233 WIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQISV 2054
            W+ SLL E+   + KP  VW DNL  V LS NPV H+RTKH ELDL+F+REKV ++++ V
Sbjct: 1350 WLRSLLSELQLPLAKPPLVWCDNLSTVLLSANPVLHARTKHIELDLYFVREKVIRKEVEV 1409

Query: 2053 QHIPGSEQVTDILTKPLTGQFFVRLRNKLNVVSKSSLELRGPNR 1922
            +H+P ++Q+ D+LTK ++   F+  R+KL + + S+L LRG  R
Sbjct: 1410 RHVPSADQLADVLTKTVSSTQFIEFRHKLRIENLSTLSLRGDVR 1453



 Score = 99.4 bits (246), Expect = 9e-18
 Identities = 67/215 (31%), Positives = 113/215 (52%)
 Frame = -2

Query: 1438 ITTKLTEVNFLVWKQQILAAINGYGLEGYLTGEISAPDQLTSEKTLNPAYGVWKRQDQVI 1259
            ++ KL   NFL+WKQQI++AI GYGL+ ++  +       + EK  +      ++Q +  
Sbjct: 31   LSVKLDNKNFLIWKQQIVSAIRGYGLQKFVFSDDEVQFNFSPEKMRD-----LEKQLRNS 85

Query: 1258 ASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQNLRKGTNSMRE 1079
            +S             ++GF+        L + FASQ+RAK  Q+K QLQ+ +KG +++ E
Sbjct: 86   SS-----GNNRINYCSLGFSHLFLSQYFLEQYFASQTRAKAKQFKTQLQHTKKGGSTIDE 140

Query: 1078 YLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRVEPYTLMEVHAXXX 899
            YL + KVC D LA++G  LS ++ +  IL GL  +Y + V S+  R + +++ E+ A   
Sbjct: 141  YLAKIKVCVDSLASVGVSLSTKDHVESILDGLPNDYESFVTSVILRNDDFSVEEIEALLM 200

Query: 898  XXXXXXXXXENTVSQINSEGSLPSANVATNESNSK 794
                      N++       S PSA+VA++ +  K
Sbjct: 201  AHESRVEKNNNSLD------SSPSAHVASSNAVEK 229



 Score = 62.4 bits (150), Expect = 1e-06
 Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
 Frame = -2

Query: 673 QPRCQICFIPGHSAAKCFHRANLNF-VPTSNNNSFYTQNQSTNHNSNDPHANRYGSFSAN 497
           +P CQ+C   GH  A+C++R +  F VP         QN S+ ++S  P A  Y SFS  
Sbjct: 307 KPACQLCGKIGHVVAQCYYRFDHTFQVP---------QNLSSRNSS--PRA--YYSFSPQ 353

Query: 496 VAS---TSQDHAQETCWFPDSGATNHLTYDLGNLNLAHDYQGTDRIQIGNGSG 347
           V     TS+  + +  W+PDSGA+NH+T +  NL  + ++ G +++ +GNG+G
Sbjct: 354 VNGVIPTSEVFSDDN-WYPDSGASNHVTPNPENLMKSAEFAGQNQVHVGNGTG 405



 Score = 62.4 bits (150), Expect = 1e-06
 Identities = 47/123 (38%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
 Frame = -3

Query: 354 VQDQKSGVILLKGNVENGLYKFHFSN-----SQSPLSRISPSCSANSKNLSVNHLQLQKS 190
           V+DQ +  +L+ G V +GLY F  S+     +QS LS+ SPS  A+S +  V    L  S
Sbjct: 463 VKDQVTQAVLMVGKVRDGLYAFDSSHLALRPTQS-LSK-SPSVVASSFSSKVCTTSLS-S 519

Query: 189 AIDVAIWHSRLGHVPLDIIKKVFQGCNFPFNDNNSQFICPSCCKAKSHIQPFPTSTTEHN 10
             D  +WH RLGH     IK V   CN    +      C SCC  K H  PF  S T + 
Sbjct: 520 TFD--LWHKRLGHPSAATIKNVLSKCNVAHINKMDSNFCSSCCLGKIHRFPFSLSHTTYT 577

Query: 9   KLL 1
           K L
Sbjct: 578 KPL 580


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 900

 Score =  400 bits (1027), Expect = e-108
 Identities = 200/403 (49%), Positives = 270/403 (66%), Gaps = 11/403 (2%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMS 2954
            +G +D E+YM Q PGF          +CKL K+LYGLKQA RAW S+L+K LQ  GF+ S
Sbjct: 499  HGYLDEEVYMRQPPGFEDARQ--PHFLCKLDKALYGLKQAPRAWYSRLSKKLQELGFSSS 556

Query: 2953 KADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGI 2774
            KAD SLFF N     +F+L YVDDIIV  S + A+  ++ DL   F+LKDLG+L YFLGI
Sbjct: 557  KADTSLFFYNKGHHKMFVLVYVDDIIVASSSSPAVNALLKDLEKDFALKDLGDLHYFLGI 616

Query: 2773 QVDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPI--SDASLYRK 2600
            +V  TP  LLL+Q++Y  +LL+ V M   K +S+P+ +   LS   G+ +  SD + YR 
Sbjct: 617  EVKRTPQTLLLSQERYTTELLERVNMTSCKPVSTPLSTAEKLSVEIGDELGPSDVTQYRS 676

Query: 2599 IVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLH 2420
            IVG+LQY T+TRPDISYSVNKV Q++Q P  +HW AVKRILRYL GT+D GL   K   +
Sbjct: 677  IVGALQYLTLTRPDISYSVNKVCQFLQTPTTAHWSAVKRILRYLKGTLDLGLKIVKSSSN 736

Query: 2419 RINTFADADWGSDLDDRRSTSGYC---------VYFGSNLVSWSAKKQAVVSRSSTEAEY 2267
             ++ F+DADW   +DDRRST G+          V+FG NL+SWSA+KQA VSRSSTEAEY
Sbjct: 737  LVSAFSDADWAGSVDDRRSTGGFADRRSTGGFAVFFGDNLISWSARKQATVSRSSTEAEY 796

Query: 2266 RSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFI 2087
            +++A+A  ++ W+  LL E+G        +W DNLGA  ++ NPVFH+RTKH E+D HF+
Sbjct: 797  KALANAAAEIIWVRKLLTELGILHPNAARLWCDNLGATYMTANPVFHARTKHIEVDYHFV 856

Query: 2086 REKVAKQQISVQHIPGSEQVTDILTKPLTGQFFVRLRNKLNVV 1958
            RE+VA++ + +  +   +QV D  TKP++ Q  +  R+ LN+V
Sbjct: 857  REQVAQKLLDIHFVSSQDQVADGFTKPISLQQLIGFRHNLNLV 899


>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
          Length = 1402

 Score =  400 bits (1027), Expect = e-108
 Identities = 201/398 (50%), Positives = 271/398 (68%)
 Frame = -2

Query: 3115 ELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSL 2936
            ++YM Q PGF+   H  +  VCKL K+LYGLKQ+ RAW +KL+  L S GF  S+ D+S+
Sbjct: 989  DVYMAQPPGFLHPNHPNK--VCKLKKALYGLKQSPRAWFTKLSSALLSXGFNSSRTDSSM 1046

Query: 2935 FFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGIQVDYTP 2756
            F    R S + +L YVDDIIVTGS    IQ +I  LHS+F+L+DLG LSYFLGI+V Y  
Sbjct: 1047 FVHFGRHSTLIVLVYVDDIIVTGSSPILIQQLIHKLHSLFALRDLGQLSYFLGIEVTYDG 1106

Query: 2755 NGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPISDASLYRKIVGSLQYA 2576
              L L+Q+KYI DLL    M  +K  ++P      LS+ DG+ + D ++YR +VG+LQYA
Sbjct: 1107 GSLHLSQRKYITDLLQRTSMLDSKAAATPGTVGLSLSQFDGDLMDDVTMYRSVVGALQYA 1166

Query: 2575 TMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLHRINTFADA 2396
            T+TRPDI++S+NK  Q+M  P  +HW +VKRILRYL GTI HGLL        I  + DA
Sbjct: 1167 TLTRPDIAFSINKACQFMHRPTSTHWSSVKRILRYLKGTITHGLLLQPSAHFTIQAYTDA 1226

Query: 2395 DWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATCDVFWIHSLL 2216
            DWG+  DDRRS+SGY VY G+NLVSW+A KQ VVSRSS E+EYR +A AT ++ W  +LL
Sbjct: 1227 DWGAQPDDRRSSSGYLVYLGNNLVSWTASKQKVVSRSSAESEYRGLAIATAEIIWTQALL 1286

Query: 2215 QEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQISVQHIPGS 2036
            +E+   I    T++ DN+ A  ++ NPVFH+RTKH E+DLHFIR++V   ++ +Q+IP +
Sbjct: 1287 RELCISITSIPTLYYDNISAYYMAKNPVFHARTKHIEIDLHFIRDQVLHNKLQLQYIPST 1346

Query: 2035 EQVTDILTKPLTGQFFVRLRNKLNVVSKSSLELRGPNR 1922
            +Q  DILTK LT   F+ LR+ L +V +    LRG ++
Sbjct: 1347 DQPADILTKHLTSSRFLSLRSHLCLVPR-PFSLRGDDK 1383



 Score =  168 bits (426), Expect = 1e-38
 Identities = 115/365 (31%), Positives = 173/365 (47%), Gaps = 3/365 (0%)
 Frame = -2

Query: 1438 ITTKLTEVNFLVWKQQILAAINGYGLEGYLTGEISAPDQLTSEKTLNPAYGVWKRQDQVI 1259
            +  KL   N+++W+ QI   I   G E ++ G    P++      +NPA+   +RQD+ I
Sbjct: 33   LPVKLDRTNYILWRSQIDNVIFANGFEDFIDGTSVCPEKELRPGEINPAFVAXRRQDRTI 92

Query: 1258 ASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQNLRKGTNSMRE 1079
             SW             +G  +S   W+AL + F+S SRA+IMQ  L+ Q+ +KG+ SM +
Sbjct: 93   LSWIYSSLTPGIMAQIIGHNSSHSAWNALEKIFSSCSRARIMQLXLEFQSTKKGSMSMID 152

Query: 1078 YLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRVEPYTLMEVHAXXX 899
            Y+ + K   D LA IG  +SE++QIM +L GL ++YNAVV +IN R +  +L  VH+   
Sbjct: 153  YIMKVKGAADSLAAIGEPVSEQDQIMNLLGGLGSDYNAVVTAINIREDKISLEAVHS--- 209

Query: 898  XXXXXXXXXENTVSQINSEGSLP--SANVATNESN-SKXXXXXXXXXXXXXXXXXXXXXX 728
                     E  + Q  S   LP  SAN A+  +N                         
Sbjct: 210  ----MLLAFEQRLEQQGSIEQLPAMSANYASXSNNRGGGRKYNGGRGPNFMMTNSNFRGR 265

Query: 727  XXXXXXXXXXXXXXXGWRQPRCQICFIPGHSAAKCFHRANLNFVPTSNNNSFYTQNQSTN 548
                              +P+CQ+C   GH+   C+HR ++ F  T NN    T   S +
Sbjct: 266  GRGXRYGQSGRQNSSSSERPQCQLCGKFGHTVQVCYHRFDITFQSTQNN----TTGVSNS 321

Query: 547  HNSNDPHANRYGSFSANVASTSQDHAQETCWFPDSGATNHLTYDLGNLNLAHDYQGTDRI 368
             NSN   A         + + S + A +  W+ DSGA++HLT ++ NL  A  Y G D++
Sbjct: 322  GNSNXMPA---------MVAXSNNXADDN-WYLDSGASHHLTQNVANLTNATPYTGADKV 371

Query: 367  QIGNG 353
             IGNG
Sbjct: 372  TIGNG 376


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  394 bits (1011), Expect = e-106
 Identities = 195/404 (48%), Positives = 273/404 (67%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMS 2954
            NG+++ ++YM Q PG+          VC+L K+LYGLKQA RAW  +L+  L  +GF+MS
Sbjct: 1003 NGELEEQVYMSQPPGYFDPQFPNR--VCRLKKALYGLKQAPRAWFQRLSSALLQWGFSMS 1060

Query: 2953 KADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGI 2774
            + D+S+F    + + + +L YVDDI+VTGS +T I ++I  L SVF+L+DLG LS+FLGI
Sbjct: 1061 RTDSSMFLHFGKATTLIVLVYVDDILVTGSSSTQISSLIAKLDSVFALRDLGQLSFFLGI 1120

Query: 2773 QVDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPISDASLYRKIV 2594
            +V Y    + L+Q KYI DLL    +   K  ++P      LSK DG+P++D + YR +V
Sbjct: 1121 EVSYNEGSMTLSQTKYISDLLHRTELFDTKPANTPGAVGKNLSKFDGDPMTDVTHYRSVV 1180

Query: 2593 GSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLHRI 2414
            G+LQY T+TRPDI+++VNK  Q+MQ P  +HW +VKRILRYL GT+  GLLF+      I
Sbjct: 1181 GALQYVTLTRPDIAFAVNKACQFMQQPTTAHWLSVKRILRYLRGTMQDGLLFSPSSNLTI 1240

Query: 2413 NTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATCDVF 2234
              F DADWG+ LDDRRS+SGY VY G NLVSWS+ KQ VVSRSS E+EYR +  AT ++ 
Sbjct: 1241 EGFTDADWGAHLDDRRSSSGYLVYLGGNLVSWSSTKQKVVSRSSAESEYRGLVFATAEIV 1300

Query: 2233 WIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQISV 2054
            W+ +LLQE+   I     +W DN+ A  ++ NPVFH+RTKH E+DLHFIR++V + +I +
Sbjct: 1301 WMQALLQELCVPIPAIPLLWYDNISAYHMAKNPVFHARTKHIEIDLHFIRDQVMRGKIQL 1360

Query: 2053 QHIPGSEQVTDILTKPLTGQFFVRLRNKLNVVSKSSLELRGPNR 1922
            Q +P  EQ  D+LTK LT   F+ L+++L  ++     LRG ++
Sbjct: 1361 QFVPTEEQPVDLLTKHLTSSRFLSLKSQL-CIAPRPFHLRGDDK 1403



 Score =  183 bits (465), Expect = 4e-43
 Identities = 112/362 (30%), Positives = 180/362 (49%)
 Frame = -2

Query: 1438 ITTKLTEVNFLVWKQQILAAINGYGLEGYLTGEISAPDQLTSEKTLNPAYGVWKRQDQVI 1259
            +  KL   N+++W+ QI   I   G E ++ G    P++  S   +NPA+  W+RQD+ I
Sbjct: 36   LPVKLDRTNYILWRSQIDNVIFANGFEDFIDGTSICPEKDLSPGVMNPAFVAWRRQDRTI 95

Query: 1258 ASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQNLRKGTNSMRE 1079
             SW             +G  TS   W+AL   F+S SRA+IMQ +L+LQ+ +KG+ SM +
Sbjct: 96   LSWIYSSLTPGIMAQIIGHNTSHSAWNALESIFSSSSRARIMQLRLELQSTKKGSMSMID 155

Query: 1078 YLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRVEPYTLMEVHAXXX 899
            Y+ + K   D LA IG  +SE++Q+M +L GL ++YNAVV +IN R +  +L  +H+   
Sbjct: 156  YIMKIKGAADNLAAIGEPVSEQDQVMNLLGGLGSDYNAVVTAINIRDDKISLEAIHS-ML 214

Query: 898  XXXXXXXXXENTVSQINSEGSLPSANVATNESNSKXXXXXXXXXXXXXXXXXXXXXXXXX 719
                     ++++ Q+++      A+ + N    +                         
Sbjct: 215  LAFEHRLEQQSSIEQMSAN----YASSSNNRGGGRKFNGGRGQGYSPNNNNYTYRGRGRG 270

Query: 718  XXXXXXXXXXXXGWRQPRCQICFIPGHSAAKCFHRANLNFVPTSNNNSFYTQNQSTNHNS 539
                           +P+CQ+C   GH+A  C+HR ++         SF     + +H+ 
Sbjct: 271  GRNGQGGRQNSSPSEKPQCQLCGKFGHTAQICYHRFDI---------SFQGGQTTISHSL 321

Query: 538  NDPHANRYGSFSANVASTSQDHAQETCWFPDSGATNHLTYDLGNLNLAHDYQGTDRIQIG 359
            N+ + N   +  A VAS S + A E+ W+ DSGA++HLT +LGNL     Y GTD++ IG
Sbjct: 322  NNGNQN---NIPAMVASASNNPADES-WYLDSGASHHLTQNLGNLTSTSPYTGTDKVTIG 377

Query: 358  NG 353
            NG
Sbjct: 378  NG 379



 Score = 69.3 bits (168), Expect = 1e-08
 Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
 Frame = -3

Query: 354 VQDQKSGVILLKGNVENGLYKFHFSNSQSPLSRISPSCSANSKNLSVNHLQLQKSAIDVA 175
           V+D  + ++L +G +ENGLYKF   ++  P S I+        N S  H Q   +  + A
Sbjct: 437 VKDLHTKMVLAQGKLENGLYKFPVFSNLKPYSSIN--------NASAFHSQFSSTVENKA 488

Query: 174 -IWHSRLGHVPLDIIKKVFQGCNFPFNDNNSQFICPSCCKAKSHIQPFPTSTTEHNKLL 1
            +WH+RLGH   DI+ KV   CN       S F+C  C  AKSH  P   S    +K L
Sbjct: 489 ELWHNRLGHASFDIVSKVMNTCNVASGKYKS-FVCSDCQLAKSHRLPTQLSNFHASKPL 546


>ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624640 [Citrus sinensis]
          Length = 1682

 Score =  393 bits (1010), Expect = e-106
 Identities = 201/392 (51%), Positives = 271/392 (69%), Gaps = 1/392 (0%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQ-SFGFTM 2957
            NG +  ++YM Q  GF+         VCKL K+LYGLKQA RAW  +L   +   +GF  
Sbjct: 439  NGILVEDVYMGQPEGFIDPSR--PLHVCKLKKALYGLKQAPRAWFERLKDAMVVKWGFQN 496

Query: 2956 SKADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLG 2777
            S++DNSLF++   D  IF+L YVDDII+TGS    +Q VI ++ + F+LKDLG LSYFLG
Sbjct: 497  SRSDNSLFYKWIGDQVIFVLVYVDDIIITGSSDKMVQQVITNMQNAFALKDLGKLSYFLG 556

Query: 2776 IQVDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPISDASLYRKI 2597
            I+V  T +G+ L+Q KYI D+L    M     + +PM +   L+K  G+ IS++S Y+  
Sbjct: 557  IEVTKTASGIYLSQSKYIADILAKHNMADCSPVPTPMATGHYLTKGSGSVISNSSQYKSA 616

Query: 2596 VGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLHR 2417
            VG+LQY T+TRP+I++SVNK+SQ++ +P   HW++ KR+LRYL GTI  GL F      +
Sbjct: 617  VGALQYVTLTRPEIAFSVNKLSQFLASPTAEHWESCKRLLRYLKGTIHFGLHFYHYGTMQ 676

Query: 2416 INTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATCDV 2237
            IN F+D+DW  D DDR+S +GY VY GSNLVSWS+KKQAVVSRSSTEAEYR++A AT +V
Sbjct: 677  INCFSDSDWACDKDDRKSVAGYAVYLGSNLVSWSSKKQAVVSRSSTEAEYRALAQATAEV 736

Query: 2236 FWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQIS 2057
             WI SLL+E+   +     +W DN  A++L+ NPV+H++TKH ELD+HFIR+KV  +QI+
Sbjct: 737  TWIQSLLKELHIHLVTAPIMWCDNQSAIALAHNPVYHAKTKHVELDIHFIRDKVTAKQIT 796

Query: 2056 VQHIPGSEQVTDILTKPLTGQFFVRLRNKLNV 1961
            VQ IP  +Q  D+LTK LT   F  LR+KLNV
Sbjct: 797  VQFIPSEDQNADVLTKALTFNQFHYLRSKLNV 828


>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
          Length = 1365

 Score =  392 bits (1006), Expect = e-106
 Identities = 196/404 (48%), Positives = 268/404 (66%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMS 2954
            NGD+  ++YM   PGF+   H  +  VCKL K+LYGLKQ+ RAW +K +  L S+GF  S
Sbjct: 946  NGDLVEQVYMAXPPGFLHPNHPNK--VCKLKKALYGLKQSPRAWFTKXSSALLSWGFNSS 1003

Query: 2953 KADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGI 2774
            + D+S+F      S + +L YVDDIIVTGS    IQ +I  LHS+F+L+DLG LSYFLGI
Sbjct: 1004 RXDSSMFVHFGTHSTLIVLVYVDDIIVTGSSPVLIQQLIHKLHSLFALRDLGQLSYFLGI 1063

Query: 2773 QVDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPISDASLYRKIV 2594
            +V Y    + L+Q KYI DLL    M  +K  ++P      LS+ DG+ + D ++YR +V
Sbjct: 1064 EVTYDGGSMHLSQSKYITDLLQRTSMLDSKAAATPGTVGLSLSQFDGDLMDDVTMYRSVV 1123

Query: 2593 GSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLHRI 2414
            G+LQYAT+TRPDI++SVNK  Q+M  P  +HW +VKRILRYL GT  HGL         +
Sbjct: 1124 GALQYATLTRPDIAFSVNKACQFMHRPTSTHWSSVKRILRYLKGTTTHGLXLQPSAHFTV 1183

Query: 2413 NTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATCDVF 2234
              + DADWG+  DDRRS+SGY VY G+NLVSW+A KQ VVS SS E+EYR +A AT ++ 
Sbjct: 1184 QAYTDADWGAQPDDRRSSSGYLVYLGNNLVSWTASKQKVVSXSSAESEYRGLAIATXEII 1243

Query: 2233 WIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQISV 2054
            W  +LL E+   +    T++ DN+ A  ++ NPVFH+RTKH E+DLHFIR++V   ++ +
Sbjct: 1244 WTQALLSELCISJTSIPTLYYDNISAYYMAKNPVFHARTKHIEIDLHFIRDQVLHNKLQL 1303

Query: 2053 QHIPGSEQVTDILTKPLTGQFFVRLRNKLNVVSKSSLELRGPNR 1922
            Q+IP ++Q  DILTK LT   F+ LR+ L +V +    LRG ++
Sbjct: 1304 QYIPSTDQPADILTKHLTSSRFLSLRSHLCLVPR-PFSLRGDDK 1346



 Score =  178 bits (451), Expect = 2e-41
 Identities = 117/365 (32%), Positives = 177/365 (48%), Gaps = 3/365 (0%)
 Frame = -2

Query: 1438 ITTKLTEVNFLVWKQQILAAINGYGLEGYLTGEISAPDQLTSEKTLNPAYGVWKRQDQVI 1259
            +  KL   N+++W+ QI   I   G E ++ G    P++      +NPA+  W+RQD+ I
Sbjct: 33   LPVKLDRTNYILWRSQIDNVIFANGFEDFIDGTSXCPEKELRPXEINPAFVAWRRQDRTI 92

Query: 1258 ASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQNLRKGTNSMRE 1079
             SW             +G  +S   W+AL + F+S SRA+IMQ +L+ Q+ +KG+ SM +
Sbjct: 93   LSWIYSSLTPGIMAQIIGHNSSHSAWNALEKIFSSCSRARIMQLRLEFQSTKKGSMSMID 152

Query: 1078 YLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRVEPYTLMEVHAXXX 899
            Y+ + K   D LA IG  +SE++QIM +L GL ++YNAVV +IN R +  +L  VH+   
Sbjct: 153  YIMKVKGAADSLAAIGEPVSEQDQIMNLLGGLGSDYNAVVTAINIREDKISLEAVHS--- 209

Query: 898  XXXXXXXXXENTVSQINSEGSLP--SANVATNESN-SKXXXXXXXXXXXXXXXXXXXXXX 728
                     E  + Q  S   LP  SAN A++ +N                         
Sbjct: 210  ----MLLAFEQRLEQQGSIEQLPAMSANYASSSNNRGGGRKYNGGRGPNFMMTNSNFRGR 265

Query: 727  XXXXXXXXXXXXXXXGWRQPRCQICFIPGHSAAKCFHRANLNFVPTSNNNSFYTQNQSTN 548
                              +P+CQ+C   GH+   C+HR ++ F  T NN    T   S +
Sbjct: 266  GRGGRYGQSGRQNSSSSERPQCQLCGKFGHTVQVCYHRFDITFQSTQNN----TTGVSNS 321

Query: 547  HNSNDPHANRYGSFSANVASTSQDHAQETCWFPDSGATNHLTYDLGNLNLAHDYQGTDRI 368
             NSN        S  A VAS+  ++  +  W+ DSGA++HLT ++ NL  A  Y G D++
Sbjct: 322  GNSN--------SMPAMVASS--NNLADDNWYLDSGASHHLTQNVANLTNATPYTGADKV 371

Query: 367  QIGNG 353
             IGNG
Sbjct: 372  TIGNG 376


>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
          Length = 1271

 Score =  391 bits (1005), Expect = e-106
 Identities = 197/404 (48%), Positives = 274/404 (67%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMS 2954
            +GD++  ++M+Q PGF+ + +     VCKL+K+LYGLKQA RAW +KL+  L  +GF  S
Sbjct: 827  HGDLEEHVFMQQPPGFINSQYPSH--VCKLNKALYGLKQAPRAWYNKLSTSLLGWGFQAS 884

Query: 2953 KADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGI 2774
            +AD+S+F  +S    + +L YVDDI+VTGS +  + + I  L+S F+L+DLG ++YFLGI
Sbjct: 885  RADSSMFIHHSTHDVLILLIYVDDILVTGSSSAQVSSFITRLNSSFALRDLGYVNYFLGI 944

Query: 2773 QVDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPISDASLYRKIV 2594
            +V  +     L+Q KY QDLL    M  +K  ++P +    LS  DG P SDA+LYR  V
Sbjct: 945  EVVRSGTMFHLSQHKYTQDLLSRTAMLDSKPATTPGLLGQTLSHLDGEPFSDATLYRSTV 1004

Query: 2593 GSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLHRI 2414
            G+LQY T+TRPDIS++VNK  Q+M  P  +HW AVKRILRYL GT+ +G+   +     I
Sbjct: 1005 GALQYLTLTRPDISFAVNKACQFMATPTTTHWLAVKRILRYLKGTLSYGIQMQQSTSLDI 1064

Query: 2413 NTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATCDVF 2234
            + + DADW S  DDRRST GY ++ G NLVSWS+ KQ VVSRSS E+EYR++ASAT ++ 
Sbjct: 1065 HGYTDADWASCPDDRRSTGGYGIFLGPNLVSWSSNKQKVVSRSSAESEYRALASATSEMI 1124

Query: 2233 WIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQISV 2054
            WI  +LQE+      P  +W DN  A  L+ NPVFH+RTKH E+DLHFIR+ V ++Q+ +
Sbjct: 1125 WIQYVLQELCLSSSSPPLLWCDNKSAAHLAANPVFHARTKHIEMDLHFIRDHVLRKQLVI 1184

Query: 2053 QHIPGSEQVTDILTKPLTGQFFVRLRNKLNVVSKSSLELRGPNR 1922
            Q++P +EQV DI TK ++   F+  R KL+VV  S + LRG +R
Sbjct: 1185 QYLPSAEQVADIFTKHISSSQFLSFRTKLSVV-PSPVSLRGDDR 1227



 Score =  147 bits (372), Expect = 2e-32
 Identities = 105/377 (27%), Positives = 171/377 (45%), Gaps = 3/377 (0%)
 Frame = -2

Query: 1465 QVIYPQSQLITTKLTEVNFLVWKQQILAAINGYGLEGYLTGEISAPDQLTSEKTLNPAYG 1286
            Q +   +  +  KL   N+++W+ Q+   +   G E ++ G    P Q TS    NP + 
Sbjct: 130  QTMQMLNHALPIKLDRNNYILWRTQMENVVFANGFEDHIEGLKICPPQKTSSGETNPDFV 189

Query: 1285 VWKRQDQVIASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQNL 1106
            +W+R D++I SW             VG+ +S   W AL   F++ SRA++MQ +L+ Q  
Sbjct: 190  MWRRFDRMILSWIYSSLTPEIMGQIVGYQSSHAAWFALERIFSASSRARVMQLRLEFQTT 249

Query: 1105 RKGTNSMREYLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRVEPYT 926
            RKG+ +M EY+ + K   D LA IG  +++ +QI+ +L GL A+YN++V S+ +    Y+
Sbjct: 250  RKGSLTMMEYILKLKSLADNLAAIGEPVTDRDQILQLLGGLGADYNSIVASLTAPF--YS 307

Query: 925  LMEVHAXXXXXXXXXXXXENTVSQINSEGSLPSANVAT---NESNSKXXXXXXXXXXXXX 755
             M+               +N+V    +E ++ SAN+AT      N+K             
Sbjct: 308  PMK----------QRLSFQNSV----AEDNVISANLATPQYQHFNNKRSSGQNRQSGFNT 353

Query: 754  XXXXXXXXXXXXXXXXXXXXXXXXGWRQPRCQICFIPGHSAAKCFHRANLNFVPTSNNNS 575
                                       +P+CQ+C   GH+  +C+HR ++NF        
Sbjct: 354  RRGTNGGRSQSSQ-------------HRPQCQLCGKFGHTVVRCYHRFDINF-------Q 393

Query: 574  FYTQNQSTNHNSNDPHANRYGSFSANVASTSQDHAQETCWFPDSGATNHLTYDLGNLNLA 395
             Y  N  T   +N P+A           ST  D A    WF D+GAT+HL+  +  L+  
Sbjct: 394  GYNPNMDT-VQTNKPNAKNQVQAMMASPSTISDEA----WFFDTGATHHLSQSIDPLSDV 448

Query: 394  HDYQGTDRIQIGNGSGS 344
              Y G D++ +GN   S
Sbjct: 449  QPYMGNDKVIVGNAFSS 465


>emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera]
          Length = 478

 Score =  391 bits (1004), Expect = e-105
 Identities = 196/403 (48%), Positives = 266/403 (66%)
 Frame = -2

Query: 3130 GDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMSK 2951
            G +  +++M Q PGF+   H     VCKL K++YGLKQA RAW  +L + L  FGF  S 
Sbjct: 74   GTLTEDVFMSQPPGFIDRDH--PHHVCKLRKAIYGLKQAPRAWYHELCQFLLQFGFINSI 131

Query: 2950 ADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGIQ 2771
            AD SLF  N+ D+ +++L YVDDII+TG+   A QT I  L   FSLKDLG L+YFLG++
Sbjct: 132  ADTSLFIFNNHDTILYLLVYVDDIIITGNNVEAAQTFIQQLSQRFSLKDLGPLTYFLGVE 191

Query: 2770 VDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPISDASLYRKIVG 2591
            V    NGL L+Q+KYI DLL+   M  AK   +P+ + P+L+   G P+SD + YR +VG
Sbjct: 192  VTSHTNGLFLSQRKYIADLLNRTHMTEAKPAPTPLATSPILTLQSGTPLSDPTEYRTVVG 251

Query: 2590 SLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLHRIN 2411
            SLQY ++TRPDI+Y+VNK+SQ+M  P   HW AVKR+LRYL GT+DH +   +     ++
Sbjct: 252  SLQYLSLTRPDIAYTVNKLSQFMHQPTSDHWNAVKRLLRYLCGTLDHDITLRRTSPLALH 311

Query: 2410 TFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATCDVFW 2231
             F+D+DW  + DD  STS Y +Y G N +SWS+KKQ  V+RSSTEAEYRS+AS   ++ W
Sbjct: 312  AFSDSDWAGNKDDFTSTSAYIIYLGHNPISWSSKKQRTVARSSTEAEYRSVASTAAEIRW 371

Query: 2230 IHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQISVQ 2051
            I SLL E+G  + +   ++ DN+GA +L  NPVFHSR KH  LD HFIRE+V    + V 
Sbjct: 372  ICSLLTELGVTLPQQPVIYCDNVGATNLCSNPVFHSRMKHVALDYHFIREQVQNGLLRVS 431

Query: 2050 HIPGSEQVTDILTKPLTGQFFVRLRNKLNVVSKSSLELRGPNR 1922
            HI  S+Q+ D LTKPL    F  L+ K+ +  + S+ LRG ++
Sbjct: 432  HISASDQLADALTKPLARPQFDSLKAKIGLAPRPSI-LRGHDK 473


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|31433472|gb|AAP54977.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1031

 Score =  390 bits (1003), Expect = e-105
 Identities = 194/393 (49%), Positives = 267/393 (67%), Gaps = 2/393 (0%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMS 2954
            +G ++ +++M Q PG+ Q   +    VCKL K+LYGLKQA RAW S+L+  L   GF  S
Sbjct: 639  HGVLEEDVFMRQPPGYEQKDGY----VCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSS 694

Query: 2953 KADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGI 2774
            K+D SLFF +  D  IF+L YVDDIIV  S   A   ++ +L+  F+LKDLG L YFLGI
Sbjct: 695  KSDTSLFFYSKGDVTIFMLVYVDDIIVASSSIVATNALLKNLNQEFALKDLGRLHYFLGI 754

Query: 2773 QVDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPIS--DASLYRK 2600
            +V    +G++LTQ+KY  D+L  V M   K +++P+     LS H+GNP+   D++ YR 
Sbjct: 755  EVKEVNDGIVLTQEKYAMDVLKRVNMSDCKAVNTPLSISEKLSAHEGNPLGPEDSTRYRS 814

Query: 2599 IVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLH 2420
            +VG+LQY T+TRPD+S+SVNKV QY+      HW A KRILRYL  T+  GL  +K +  
Sbjct: 815  LVGALQYLTLTRPDLSFSVNKVCQYLHAATTKHWVAAKRILRYLKHTVKLGLKISKSNSL 874

Query: 2419 RINTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATCD 2240
             ++ F+DADW   LDDRRST G+ V+ G NLVSWSA+KQA VSRSSTEAEY+++A+AT +
Sbjct: 875  LVSAFSDADWAGCLDDRRSTGGFAVFIGPNLVSWSARKQATVSRSSTEAEYKALANATAE 934

Query: 2239 VFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQI 2060
            + WI +LL E+G Q+ K   VW DN+GA  ++ NPVFH+RTKH E+D HF+RE+VA++ +
Sbjct: 935  IMWIQTLLHELGIQVPKIAKVWCDNIGAKYMTANPVFHARTKHIEVDYHFVRERVARKLL 994

Query: 2059 SVQHIPGSEQVTDILTKPLTGQFFVRLRNKLNV 1961
             V++I   +QV D  TK L+ +     RN LN+
Sbjct: 995  QVEYISTKDQVADGFTKTLSVRQLEMFRNNLNL 1027



 Score =  115 bits (287), Expect = 2e-22
 Identities = 89/377 (23%), Positives = 146/377 (38%), Gaps = 13/377 (3%)
 Frame = -2

Query: 1438 ITTKLTEVNFLVWKQQILAAINGYGLEGYLTGEISAP-----------DQLTSEKTLNPA 1292
            I+ KLT+ N  +W  QIL  + G  LE ++    +AP           D+ T     NP 
Sbjct: 19   ISEKLTKQNHPLWAAQILTTLRGAQLEEHIVSTTAAPAAEIEKEDGDKDKKTKIVIPNPE 78

Query: 1291 YGVWKRQDQVIASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQ 1112
            Y  W  QDQ +  +              G  T+ Q W+ + + F+ +S+A  +   L L 
Sbjct: 79   YKTWFVQDQQVLGFIFSSLSREVLQQVAGARTAAQAWNMIDDMFSCKSKAGTINVLLALT 138

Query: 1111 NLRKGTNSMREYLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSI--NSRV 938
              +KG  S+ EY+ + +   D +A  G  L EEE + YI+ GL++E++A V  +   +R+
Sbjct: 139  TTQKGPMSISEYIAKMRSLADEMAATGKPLDEEELVAYIINGLDSEFDAAVEGLMATARI 198

Query: 937  EPYTLMEVHAXXXXXXXXXXXXENTVSQINSEGSLPSANVATNESNSKXXXXXXXXXXXX 758
             P ++  V++                 +I       SAN A N    +            
Sbjct: 199  APVSISHVYSQLLSYENRI--------RIRQAYLTTSAN-AANRGGGRGGRGSSTGNRGG 249

Query: 757  XXXXXXXXXXXXXXXXXXXXXXXXXGWRQPRCQICFIPGHSAAKCFHRANLNFVPTSNNN 578
                                        +P CQ+C   GH A+ C+HR + ++VP     
Sbjct: 250  RRGGFGRGGRGRGAPSGASQGRGRGNDTRPVCQVCHKRGHVASDCWHRYDDSYVPDEKLG 309

Query: 577  SFYTQNQSTNHNSNDPHANRYGSFSANVASTSQDHAQETCWFPDSGATNHLTYDLGNLNL 398
                                         + +  +  +T W+ D+GAT+H+T  L  L  
Sbjct: 310  ----------------------------GAATYAYGVDTNWYVDTGATDHITGQLDKLTT 341

Query: 397  AHDYQGTDRIQIGNGSG 347
               Y+GTD+I   +G G
Sbjct: 342  KERYKGTDQIHTASGEG 358


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  390 bits (1001), Expect = e-105
 Identities = 195/398 (48%), Positives = 271/398 (68%), Gaps = 7/398 (1%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMS 2954
            +G ++ E+YM+Q PG+  +       VCKL K+LYGLKQA RAW S+L+  L S GF  S
Sbjct: 920  HGVLEEEVYMQQPPGYEDSTKLN--YVCKLDKALYGLKQAPRAWYSRLSNKLLSLGFQAS 977

Query: 2953 KADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGI 2774
            KAD SLFF N     IF+L YVDDIIV  S   A + ++ DL+  F+LKDLG+L+YFLGI
Sbjct: 978  KADTSLFFYNKGSVTIFVLVYVDDIIVASSTHKATEALLSDLNKEFALKDLGDLNYFLGI 1037

Query: 2773 QVDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPIS--DASLYRK 2600
            +V+   +G++LTQ KY  DLL  VGM   K +S+P+ +   LS H+G+P+   D + YR 
Sbjct: 1038 EVNKVRDGIILTQDKYASDLLKKVGMSDCKPISTPLSTSEKLSIHEGSPLGEKDITQYRS 1097

Query: 2599 IVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLH 2420
            IVG+LQY T+TRPDI++SVNKV Q++  P   HW AVKRILRY+    + GL     H+H
Sbjct: 1098 IVGALQYLTLTRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYIKQCTNLGL-----HIH 1152

Query: 2419 R-----INTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIA 2255
            R     ++ F+DADW   +DDR+ST G+ V+ GSNLVSWSA+KQ  VSRSSTE+EY+++A
Sbjct: 1153 RSDSTLVSAFSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTESEYKALA 1212

Query: 2254 SATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKV 2075
            +AT ++ W+  LL EI  +  +   +W DNLGA  LS NP+FH+RTKH E+D HF+R++V
Sbjct: 1213 NATAELIWVQILLTEISIKSPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDYHFVRDRV 1272

Query: 2074 AKQQISVQHIPGSEQVTDILTKPLTGQFFVRLRNKLNV 1961
            AK+ + ++++P  +QV D  TKPL+ +     +  LN+
Sbjct: 1273 AKKLLDIEYVPTGDQVADGFTKPLSVRLLENFKVNLNL 1310



 Score =  138 bits (348), Expect = 1e-29
 Identities = 94/354 (26%), Positives = 151/354 (42%), Gaps = 4/354 (1%)
 Frame = -2

Query: 1399 KQQILAAINGYGLEGYLTGEISAPDQLT----SEKTLNPAYGVWKRQDQVIASWXXXXXX 1232
            K Q+ AA+ G  LEGYLTG    PD+ T     +K+ NPA+  W+ +DQ I S+      
Sbjct: 5    KAQVRAAMRGARLEGYLTGATKMPDEETVDNKGKKSPNPAFEEWEAKDQQILSYLLSSIS 64

Query: 1231 XXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQNLRKGTNSMREYLNRAKVCC 1052
                I      T+ + W ++   FASQ+RA+ +  +L L   +KG+ ++ EY  + K   
Sbjct: 65   REVQIQVTSAKTAAEAWHSIEAMFASQTRARAVNLRLALSTTKKGSMTVAEYYTKMKGYG 124

Query: 1051 DMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRVEPYTLMEVHAXXXXXXXXXXXX 872
            D +A  G  L +EE + YILTGL  E+  +V ++ +RV+P +L ++++            
Sbjct: 125  DEMAAAGRPLQDEEMVEYILTGLEEEFLPMVSALVTRVDPISLEDLYSQLLNFETKLDLM 184

Query: 871  ENTVSQINSEGSLPSANVATNESNSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 692
                 Q     ++       N+                                      
Sbjct: 185  RGGGEQHQGSANMAGRGGRGNQRGGSGGRGQRGGRGSSRGGRASWSGGRQSNQGGYIRRS 244

Query: 691  XXXGWRQPRCQICFIPGHSAAKCFHRANLNFVPTSNNNSFYTQNQSTNHNSNDPHANRYG 512
                  +P CQ+CF  GH+AA+C+HR   +FVP                           
Sbjct: 245  NNSSDERPVCQVCFKKGHTAARCWHRFEEDFVPDEKLAG--------------------- 283

Query: 511  SFSANVASTSQDHAQETCWFPDSGATNHLTYDLGNLNLAHDYQGTDRIQIGNGS 350
                  A+T+  H  +T W+ D+GAT+H+T +L  L++   Y G D+I   +GS
Sbjct: 284  ------AATNSYHV-DTNWYTDTGATDHITGELEKLSIREKYAGGDQIHTASGS 330


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  390 bits (1001), Expect = e-105
 Identities = 193/393 (49%), Positives = 264/393 (67%), Gaps = 2/393 (0%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMS 2954
            +G ++ E+YM+Q PGF          VCKL K+LYGLKQA RAW S+L+K L   GF  S
Sbjct: 1043 HGFLEEEVYMQQPPGFESFSK--PNYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEAS 1100

Query: 2953 KADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGI 2774
            KAD SLFF N     +F+L YVDDII+  S   A   ++ DL+  F+LKDLG+L YFLGI
Sbjct: 1101 KADTSLFFLNKGGIIMFVLVYVDDIIIASSTEKATTALLKDLNKEFALKDLGDLHYFLGI 1160

Query: 2773 QVDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPI--SDASLYRK 2600
            +V   PNG++LTQ+KY  DLL  V M   K +S+P+     L+ ++G+P+  +DA+ YR 
Sbjct: 1161 EVTKVPNGIVLTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRS 1220

Query: 2599 IVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLH 2420
            IVG+LQY T+TRPDI+YSVNKV Q++  P   HW AVKRILRYL      GL   K    
Sbjct: 1221 IVGALQYLTLTRPDIAYSVNKVCQFLHAPTTDHWTAVKRILRYLNQCTSLGLNIHKSAST 1280

Query: 2419 RINTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATCD 2240
             ++ ++DADW   +DDR+ST G+ V+ GSNLVSWSA+KQ  VSRSSTEAEY+++A+ T +
Sbjct: 1281 LVHGYSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAE 1340

Query: 2239 VFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQI 2060
            + W+ +LL+E+G    K   +W DNLGA  LS NPVFH+RTKH E+D HF+RE+V+++ +
Sbjct: 1341 LIWVQTLLRELGIDSPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLL 1400

Query: 2059 SVQHIPGSEQVTDILTKPLTGQFFVRLRNKLNV 1961
             +  +P  +QV D  TK L+ +     ++ LN+
Sbjct: 1401 EIDFVPSGDQVADGFTKALSVRLLEHFKHNLNL 1433



 Score =  126 bits (317), Expect = 5e-26
 Identities = 89/375 (23%), Positives = 158/375 (42%), Gaps = 7/375 (1%)
 Frame = -2

Query: 1450 QSQLITTKLTEVNFLVWKQQILAAINGYGLEGYLTGEISAPDQLTSE----KTL---NPA 1292
            Q   ++ KL + N  +WK Q+ AA+ G  L+G+LTG + APD   S     KT    NPA
Sbjct: 16   QGHSVSEKLGKGNHALWKAQVSAAVRGARLQGHLTGAVKAPDAELSVTIDGKTTTKPNPA 75

Query: 1291 YGVWKRQDQVIASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQ 1112
            +  W   DQ++  +          I      T+ + W A+   +++ +RA+ +  +L L 
Sbjct: 76   FEDWDANDQLVLGYLLSSLSRDVLIQVATCKTAAEAWRAIEGLYSTGTRARAVNTRLALT 135

Query: 1111 NLRKGTNSMREYLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRVEP 932
            N +KGT  + EY+ + +   D +A  G  L EE+ + YI+ GLN +++ +V ++ ++ +P
Sbjct: 136  NTKKGTMKIAEYVAKMRALGDEMAAGGRPLDEEDLVQYIIAGLNEDFSPIVSNLCNKSDP 195

Query: 931  YTLMEVHAXXXXXXXXXXXXENTVSQINSEGSLPSANVATNESNSKXXXXXXXXXXXXXX 752
             T+ E+++             +T    +  G+   AN                       
Sbjct: 196  ITVGELYSQLVNFETLLDLYRST----SQGGAAFVANRGRGGGGGGRGGNNNGGHSSNGS 251

Query: 751  XXXXXXXXXXXXXXXXXXXXXXXGWRQPRCQICFIPGHSAAKCFHRANLNFVPTSNNNSF 572
                                     R+P CQ+CF  GH+AA C++R + ++V        
Sbjct: 252  GGRGAPRGRSGGQARGRGRGLGGQDRRPTCQVCFKRGHTAADCWYRFDEDYVADEK---- 307

Query: 571  YTQNQSTNHNSNDPHANRYGSFSANVASTSQDHAQETCWFPDSGATNHLTYDLGNLNLAH 392
                                      A+ +  +  +T W+ D+GAT+H+T +L  L    
Sbjct: 308  ------------------------LAAAATNSYGIDTNWYIDTGATDHITGELEKLTTKE 343

Query: 391  DYQGTDRIQIGNGSG 347
             Y G ++I   +G+G
Sbjct: 344  KYNGNEQIHTASGAG 358


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  389 bits (998), Expect = e-105
 Identities = 194/393 (49%), Positives = 264/393 (67%), Gaps = 2/393 (0%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMS 2954
            +G ++ E+YM+Q PGF  +       VCKL K+LYGLKQA RAW S+L+K L   GF  S
Sbjct: 1052 HGFLEEEVYMQQPPGFESSSK--PDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEAS 1109

Query: 2953 KADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGI 2774
            KAD SLFF N     +F+L YVDDIIV  S   A   ++ DL+  F+LKDLG+L YFLGI
Sbjct: 1110 KADTSLFFLNKGGILMFVLVYVDDIIVASSTEKATTALLKDLNKEFALKDLGDLHYFLGI 1169

Query: 2773 QVDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPI--SDASLYRK 2600
            +V    NG++LTQ+KY  DLL  V M   K +S+P+     L+ ++G+P+  +DA  YR 
Sbjct: 1170 EVTKVSNGVILTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRS 1229

Query: 2599 IVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLH 2420
            IVG+LQY T+TRPDI+YSVNKV Q++  P  SHW AVKRILRYL      GL   K    
Sbjct: 1230 IVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTSLGLHIHKSAST 1289

Query: 2419 RINTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATCD 2240
             ++ ++DADW   +DDR+ST G+ V+ GSNLVSWSA+KQ  VSRSSTEAEY+++A+ T +
Sbjct: 1290 LVHGYSDADWAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAE 1349

Query: 2239 VFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQI 2060
            + W+ +LL+E+G +  K   +W DNLGA  LS NPVFH+RTKH E+D HF+RE+V+++ +
Sbjct: 1350 LIWVQTLLKELGIESPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLL 1409

Query: 2059 SVQHIPGSEQVTDILTKPLTGQFFVRLRNKLNV 1961
             +  +P  +QV D  TK L+       ++ LN+
Sbjct: 1410 EIDFVPSGDQVADGFTKALSACLLENFKHNLNL 1442



 Score =  129 bits (324), Expect = 8e-27
 Identities = 91/379 (24%), Positives = 163/379 (43%), Gaps = 11/379 (2%)
 Frame = -2

Query: 1450 QSQLITTKLTEVNFLVWKQQILAAINGYGLEGYLTGEISAPDQLTSE----KTL---NPA 1292
            Q   ++ KL + N  +WK Q+ AA+ G  L GYL G+I APD   S     KT    NPA
Sbjct: 17   QGHSVSEKLGKANHALWKAQVSAAVRGARLLGYLNGDIKAPDAELSVTIDGKTTTKPNPA 76

Query: 1291 YGVWKRQDQVIASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQ 1112
            +  W+  DQ++  +          I      T+ + W ++   +++ +RA+ +  +L L 
Sbjct: 77   FEDWEANDQLVLGYLLSSLSRDVLIQVATCKTAAEAWRSIEALYSTGTRARAVNTRLALT 136

Query: 1111 NLRKGTNSMREYLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRVEP 932
            N +KGT  + EY+ + +   D +A  G+ L EE+ + YI+ GLN +++ +V ++ ++ +P
Sbjct: 137  NTKKGTMKIAEYVAKMRALGDEMAAGGHPLDEEDLVQYIIAGLNEDFSPIVSNLCNKSDP 196

Query: 931  YTLMEVHAXXXXXXXXXXXXENT----VSQINSEGSLPSANVATNESNSKXXXXXXXXXX 764
             T+ E+++             +T     + + + G         N +NS           
Sbjct: 197  ITVGELYSQLVNFETLLDLYRSTGQGGAAFVANRGRGGGGGGRGNNNNSGGGGGRSAPGG 256

Query: 763  XXXXXXXXXXXXXXXXXXXXXXXXXXXGWRQPRCQICFIPGHSAAKCFHRANLNFVPTSN 584
                                         R+P CQ+CF  GH+AA C++R + ++V    
Sbjct: 257  RGSGSQGRGGRGRGTGGQD----------RRPTCQVCFKRGHTAADCWYRFDEDYVADEK 306

Query: 583  NNSFYTQNQSTNHNSNDPHANRYGSFSANVASTSQDHAQETCWFPDSGATNHLTYDLGNL 404
                                         VA+ +  +  +T W+ D+GAT+H+T +L  L
Sbjct: 307  ----------------------------LVAAATNSYGIDTNWYIDTGATDHITGELEKL 338

Query: 403  NLAHDYQGTDRIQIGNGSG 347
                 Y G ++I   +G+G
Sbjct: 339  TTKEKYNGGEQIHTASGAG 357


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  388 bits (997), Expect = e-105
 Identities = 193/393 (49%), Positives = 264/393 (67%), Gaps = 2/393 (0%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMS 2954
            +G ++ +++M Q PG+ Q   +    VCKL K+LYGLKQA RAW S+L+  L   GF  S
Sbjct: 1039 HGVLEEDVFMRQPPGYEQKDGY----VCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSS 1094

Query: 2953 KADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGI 2774
            K+D SLFF +  D  +F+L YVDDIIV  S   A   ++ +L+  F+LKDLG L YFLGI
Sbjct: 1095 KSDTSLFFYSKGDVAMFMLVYVDDIIVASSSIDATNALLKNLNQEFALKDLGRLHYFLGI 1154

Query: 2773 QVDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPIS--DASLYRK 2600
            +V    NG++LTQ+KY  D+L  V M   K +++P+     LS H+GNP    D++ YR 
Sbjct: 1155 EVKEVNNGIVLTQEKYAMDVLKRVNMSDCKAVNTPLSISEKLSAHEGNPFGPEDSTRYRS 1214

Query: 2599 IVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLH 2420
            +VG+LQY T+TRPD+S+SVNKV QY+  P   HW A KRILRYL  T+  GL  +K +  
Sbjct: 1215 LVGALQYLTLTRPDLSFSVNKVCQYLHAPTTKHWAAAKRILRYLKHTVKLGLKISKSNSL 1274

Query: 2419 RINTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATCD 2240
             ++ F+DADW   LDDR ST G+ V+ G NLVSWSA+KQA VSRSSTEAEY+++A+ T +
Sbjct: 1275 LVSAFSDADWAGCLDDRHSTGGFAVFIGPNLVSWSARKQATVSRSSTEAEYKALANVTAE 1334

Query: 2239 VFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQI 2060
            + WI +LL E+G Q  K   VW DN+GA  ++ NPVFH+RTKH E+D HF+RE+VA++ +
Sbjct: 1335 IMWIQTLLHELGIQAPKIAKVWCDNIGAKYMTANPVFHARTKHIEVDYHFVRERVARKFL 1394

Query: 2059 SVQHIPGSEQVTDILTKPLTGQFFVRLRNKLNV 1961
             V++I   +QV D  TK L+ +     RN LN+
Sbjct: 1395 QVEYISTKDQVADGFTKTLSVRQLEMFRNNLNL 1427



 Score =  109 bits (272), Expect = 9e-21
 Identities = 88/378 (23%), Positives = 144/378 (38%), Gaps = 13/378 (3%)
 Frame = -2

Query: 1438 ITTKLTEVNFLVWKQQILAAINGYGLEGYLTGEISAP-----------DQLTSEKTLNPA 1292
            I+ KLT+ N  +W  QIL  + G  LE ++    +AP           D+ T     NP 
Sbjct: 19   ISDKLTKQNHPLWAAQILTTLRGAQLEEHIVSTTAAPAAEIEKEDGDKDKKTKIVIPNPE 78

Query: 1291 YGVWKRQDQVIASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQ 1112
            Y  W  QDQ +  +              G  T+ Q W+ + + F+ +S+A          
Sbjct: 79   YKTWFVQDQQVLGFIFSSLSREVLQQVAGARTAAQAWNMIDDMFSCKSKAG--------- 129

Query: 1111 NLRKGTNSMREYLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSI--NSRV 938
             + KG  SM EY+ + +   D +A  G  L EEE + YI+ GL++E++A V  +   +R+
Sbjct: 130  TINKGPMSMSEYIAKMRSLADKMAATGKPLDEEELVAYIINGLDSEFDAAVEGLMATARI 189

Query: 937  EPYTLMEVHAXXXXXXXXXXXXENTVSQINSEGSLPSANVATNESNSKXXXXXXXXXXXX 758
             P ++  V++                 +I       SAN A N    +            
Sbjct: 190  APVSISHVYSQLLSYENRI--------RIRQAYLTTSAN-AANRGGGRGGRGSSTGNRGG 240

Query: 757  XXXXXXXXXXXXXXXXXXXXXXXXXGWRQPRCQICFIPGHSAAKCFHRANLNFVPTSNNN 578
                                        +P CQ+C   GH A+ C+HR + ++VP     
Sbjct: 241  GRGGFGRGGHGRGAPSGASQGRGRGNDTRPVCQVCHKRGHVASDCWHRYDDSYVPDEKLG 300

Query: 577  SFYTQNQSTNHNSNDPHANRYGSFSANVASTSQDHAQETCWFPDSGATNHLTYDLGNLNL 398
                                         + +  +  +T W+ D+GAT+H+T  L  L  
Sbjct: 301  ----------------------------GAATYAYGVDTNWYVDTGATDHITGQLDKLTT 332

Query: 397  AHDYQGTDRIQIGNGSGS 344
               Y+GTD+I   +G G+
Sbjct: 333  KERYKGTDQIHTASGEGT 350


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
            gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
            Japonica Group]
          Length = 821

 Score =  385 bits (988), Expect = e-104
 Identities = 192/393 (48%), Positives = 266/393 (67%), Gaps = 2/393 (0%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMS 2954
            +G ++ E+YMEQ PG+ +        VCKL K+LYGLKQA RAW S+L+  L   GF  S
Sbjct: 422  HGVLEEEVYMEQPPGYEKKSM--PNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPS 479

Query: 2953 KADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGI 2774
            KAD SLFF       IF+L YVDDII+  S   A  T++ +L   F+LKDLG+L YFLGI
Sbjct: 480  KADTSLFFYKKGQVSIFLLIYVDDIIMASSVPDATSTLLQELSKDFALKDLGDLHYFLGI 539

Query: 2773 QVDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPIS--DASLYRK 2600
            +V    +GL+L+Q+KY  DLL  VGM   K +S+P+ +   LS ++G  +   D++ YR 
Sbjct: 540  EVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRS 599

Query: 2599 IVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLH 2420
            +VG+LQY T+TRPDIS+S+NKV Q++  P  +HW AVKRILRY+  T+D GL F +    
Sbjct: 600  VVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSL 659

Query: 2419 RINTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATCD 2240
             ++ F+DADW    DDRRST G+ V+ G NLVSWSA+KQA VSRSSTEAEY+++A+AT +
Sbjct: 660  LVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSTEAEYKALANATAE 719

Query: 2239 VFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQI 2060
            + W+ +LLQE+G +  +   +W DNLGA  LS NP+FH+RTKH E+D HF+RE+VA++ +
Sbjct: 720  IMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERVARKLL 779

Query: 2059 SVQHIPGSEQVTDILTKPLTGQFFVRLRNKLNV 1961
             + +I   +QV D  TK +  +     +N LN+
Sbjct: 780  EIAYISTKDQVADGFTKAIPVRQMEMFKNNLNL 812


>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  384 bits (985), Expect = e-103
 Identities = 206/404 (50%), Positives = 267/404 (66%), Gaps = 3/404 (0%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTG--HHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFT 2960
            +G +  ++YM Q PGFV     HH    VCKL KSLYGLKQA RAW       + S GF+
Sbjct: 1264 HGHLKEDVYMVQPPGFVDPSKPHH----VCKLRKSLYGLKQAPRAWYEAFYTAILSLGFS 1319

Query: 2959 MSKADNSLFFRNSRDSHI-FILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYF 2783
             S +D SLF +  RD+ I FIL YVDDII+TGS  T  Q++I  L ++F +KDLG+++YF
Sbjct: 1320 SSHSDTSLFIK--RDTSITFILVYVDDIIITGSSVTECQSIISQLQTMFPVKDLGDINYF 1377

Query: 2782 LGIQVDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPISDASLYR 2603
            LGI+V  +  GLLL Q KY  DLL    M GAK  ++P+ +  L   H G  +SD + YR
Sbjct: 1378 LGIEVHKSDQGLLLHQAKYALDLLKKTDMLGAKPCATPVSTSKL--DHSGTLLSDPTSYR 1435

Query: 2602 KIVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHL 2423
              VG+LQY T TRPD++++VN+V QYM +P   H +AVKRILRYL GT+D GL FTKG  
Sbjct: 1436 STVGALQYLTWTRPDLAFAVNQVCQYMHSPQTIHLQAVKRILRYLKGTVDLGLWFTKGS- 1494

Query: 2422 HRINTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATC 2243
              +  ++DADW     DRRSTSGYCV+ GSNL+SWSAKKQA V+RSSTEAEYRS+A+   
Sbjct: 1495 QCLTAWSDADWAGCPVDRRSTSGYCVFLGSNLISWSAKKQATVARSSTEAEYRSLANTAA 1554

Query: 2242 DVFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQ 2063
            ++ W+  +L +I F + K   ++ DN   ++L+ NPVFH+RTKH E+D H+IREKV    
Sbjct: 1555 EITWVCKILHDISFPLLKTPVIYCDNKSVIALAFNPVFHARTKHVEIDYHYIREKVLLGH 1614

Query: 2062 ISVQHIPGSEQVTDILTKPLTGQFFVRLRNKLNVVSKSSLELRG 1931
            I VQH+    Q+ DI TKPL    F  L +KL+V S  S  LRG
Sbjct: 1615 IGVQHVASLLQIADIFTKPLAADRFAALTSKLSVRS-PSFSLRG 1657



 Score =  100 bits (248), Expect = 5e-18
 Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 4/181 (2%)
 Frame = -2

Query: 1441 LITTKLTEVNFLVWKQQILAAINGYGLEGYLTGEISAPDQLTSEKT----LNPAYGVWKR 1274
            ++ TKL   N++ W+   +  +  + L G + GE   P     + +     N ++  W  
Sbjct: 273  MVPTKLNRQNYITWRSLFIPVLKRFKLIGLVNGEDLCPPPFVRDPSGTCVPNASFETWCE 332

Query: 1273 QDQVIASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQNLRKGT 1094
            +DQ++  W            T+G   S+ +W +L   F+  SR  +   + ++Q + KG 
Sbjct: 333  RDQILMIWINSTLSKDLLPLTIGMEDSRSLWQSLERRFSGASRTHVHSLRSKIQTIHKGD 392

Query: 1093 NSMREYLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRVEPYTLMEV 914
            +SM ++LN  K   + LA  G  LSE + + YIL+GL  EY + V SI +R E  T  E+
Sbjct: 393  SSMTDFLNSIKEISNKLAAAGEPLSESDLVAYILSGLPDEYESFVDSIETRNESVTADEL 452

Query: 913  H 911
            H
Sbjct: 453  H 453


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  383 bits (984), Expect = e-103
 Identities = 193/393 (49%), Positives = 265/393 (67%), Gaps = 2/393 (0%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMS 2954
            +G ++ E+YM+Q PG+  +   G   VCKL K+LYGLKQA RAW S+L+K L   GF  S
Sbjct: 854  HGVLEEEVYMKQPPGYEDSSLPG--YVCKLDKALYGLKQAPRAWYSRLSKKLYDMGFQGS 911

Query: 2953 KADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGI 2774
            KAD SLFF N  D  IF+L YVDDIIVT S   A+  ++ DL   F+LKDLG+L YFLGI
Sbjct: 912  KADTSLFFYNKGDLIIFVLIYVDDIIVTSSRQEAVPALLRDLQKEFALKDLGDLHYFLGI 971

Query: 2773 QVDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPI--SDASLYRK 2600
            +V     G++LTQ KY+ DLL  V M   K +S+P+ +   LS ++G+P+  +DA+ YR 
Sbjct: 972  EVTKVSGGIVLTQDKYVNDLLRRVNMFDCKPVSTPLSTSEKLSINEGDPLGPNDATHYRS 1031

Query: 2599 IVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLH 2420
            +VG+LQY T+TRPDI++ VNKV Q++  P   HW AVKRILRYL      GL  +K    
Sbjct: 1032 VVGALQYLTLTRPDIAFPVNKVCQFLHAPTTHHWAAVKRILRYLKQCTRLGLKLSKSRSM 1091

Query: 2419 RINTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATCD 2240
             ++ ++DADW   LDDRRST G+ V+ G NLVSWSA+KQA VSRSSTE+EY+++A+AT +
Sbjct: 1092 LVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVSWSARKQATVSRSSTESEYKALANATAE 1151

Query: 2239 VFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQI 2060
            + W+ +LL E+  +      +W DNLGA  LS NPVFH+RTKH E+D HF+RE+V+++ +
Sbjct: 1152 IMWVQTLLAELQVESPSMAKLWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSRKLL 1211

Query: 2059 SVQHIPGSEQVTDILTKPLTGQFFVRLRNKLNV 1961
             +  +P  +QV D  TK L+ +     +  LN+
Sbjct: 1212 EIDFVPTGDQVADGFTKALSVRQLENFKYNLNL 1244



 Score = 94.0 bits (232), Expect = 4e-16
 Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 10/184 (5%)
 Frame = -2

Query: 1438 ITTKLTEVNFLVWKQQILAAINGYGLEGYLTGEISAPDQLTS----------EKTLNPAY 1289
            I+ KL + N+ +WK Q+LA++ G  LEG+LTG  +AP    S           +  NPAY
Sbjct: 12   ISEKLAKNNYALWKAQVLASVRGARLEGHLTGTTAAPAITISVPGEKEGDKATRVANPAY 71

Query: 1288 GVWKRQDQVIASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQN 1109
              W   DQ I                    T+   W  L E + S +RA+ +  ++ L N
Sbjct: 72   DEWVATDQQILGLLLSTLSRDVLAQVATCGTAATAWSMLEEMYTSMTRARFINTRIALSN 131

Query: 1108 LRKGTNSMREYLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRVEPY 929
             +KG  S+ EY+ + +   D +   G  +  E+ I YI+ GL+  Y  V+ SI  + EP 
Sbjct: 132  TKKGDLSITEYVAKMRALGDDMTAAGKVVDNEDLISYIIAGLDDTYEPVISSIVGKSEPM 191

Query: 928  TLME 917
            +  E
Sbjct: 192  SFGE 195


>emb|CAN67546.1| hypothetical protein VITISV_027734 [Vitis vinifera]
          Length = 1635

 Score =  383 bits (983), Expect = e-103
 Identities = 189/404 (46%), Positives = 270/404 (66%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMS 2954
            NG+++ ++YM Q PG++ T    +  VC+L K+LYGLKQA RAW  +L+  L  +GF+ S
Sbjct: 797  NGELEEQVYMSQPPGYLDTTFPTK--VCRLKKALYGLKQAPRAWFQRLSSALIQWGFSNS 854

Query: 2953 KADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGI 2774
            + D+S+F      + + +L YVDDII+ G  +T I ++I  L S+F+L+DLG LSYFLGI
Sbjct: 855  RTDSSMFLHFGESTTLIVLVYVDDIIIXGCSSTQISSLIXKLDSIFTLRDLGQLSYFLGI 914

Query: 2773 QVDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPISDASLYRKIV 2594
            +V Y    + L+Q KY+ DLL    M   K   +P V    LSK DG+P+ + + YR +V
Sbjct: 915  EVSYHEGSMNLSQTKYVSDLLHRTEMFDTKPAKTPGVVGKNLSKFDGDPMDEVTQYRSVV 974

Query: 2593 GSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLHRI 2414
            G+LQY T+TRPDI+++VNK  Q+MQ P  +HW ++KRILRYL GT+  GLL +      I
Sbjct: 975  GALQYLTITRPDIAFAVNKACQFMQQPTSAHWLSIKRILRYLKGTMQDGLLLSPSTNLTI 1034

Query: 2413 NTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATCDVF 2234
              F+DA+WG+  DDRRS+SGY VY G NLVSWS+ KQ VVSRSS E+EYR +A AT ++ 
Sbjct: 1035 EXFSDANWGAQPDDRRSSSGYLVYLGGNLVSWSSTKQKVVSRSSAESEYRGLALATAEII 1094

Query: 2233 WIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQISV 2054
            W+ +LLQE+   I     +W DN+ A  ++ NPVFH+RTKH E+DLHFIR++V + +I +
Sbjct: 1095 WMQALLQELCVPIPAIPLLWYDNISAYHMAKNPVFHARTKHIEIDLHFIRDQVIRGKIQL 1154

Query: 2053 QHIPGSEQVTDILTKPLTGQFFVRLRNKLNVVSKSSLELRGPNR 1922
              +P  +Q  D+LTK LT   F+ L++ L + S+    LRG ++
Sbjct: 1155 HFVPTEDQPADLLTKHLTSSRFLSLKSHLCIASR-PFHLRGDDK 1197



 Score =  130 bits (328), Expect = 3e-27
 Identities = 87/286 (30%), Positives = 143/286 (50%)
 Frame = -2

Query: 1210 VGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQNLRKGTNSMREYLNRAKVCCDMLATIG 1031
            +G  +S   W+AL + F+S SRA+IMQ +L+LQ+ +KG+ SM +Y+ + K   D LA IG
Sbjct: 5    IGHNSSHFAWNALEKTFSSSSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSLAAIG 64

Query: 1030 YKLSEEEQIMYILTGLNAEYNAVVVSINSRVEPYTLMEVHAXXXXXXXXXXXXENTVSQI 851
              + E++Q+M +L GL ++YNAVV +IN R +  ++  VH+            ++++ Q 
Sbjct: 65   EPILEQDQVMNLLDGLGSDYNAVVTAINIRDDKISIEAVHS-MLLAFEHRLEQQSSIEQF 123

Query: 850  NSEGSLPSANVATNESNSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWRQ 671
             S  S   A+   +    +                                      + +
Sbjct: 124  -SPISANYASSXNSRGGGRRYNGGRGQNHTPNISNYTYRGRGRGGRYGXNGRHNSNSFEK 182

Query: 670  PRCQICFIPGHSAAKCFHRANLNFVPTSNNNSFYTQNQSTNHNSNDPHANRYGSFSANVA 491
            P+CQ+C   GH+   C+HR ++++              S + N++  +A    S  A VA
Sbjct: 183  PQCQLCGKFGHTVQICYHRFDISY------------QSSQSINTSPSNAGNPNSIPAMVA 230

Query: 490  STSQDHAQETCWFPDSGATNHLTYDLGNLNLAHDYQGTDRIQIGNG 353
            S S + A +T W+ DSGA++HLT  +GNL  +  Y GTD++ IGNG
Sbjct: 231  S-SNNLADDT-WYLDSGASHHLTQSVGNLTSSSPYTGTDKVTIGNG 274


>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  382 bits (982), Expect = e-103
 Identities = 197/393 (50%), Positives = 258/393 (65%), Gaps = 2/393 (0%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMS 2954
            +G ++ E+YM Q PGF   G      +CKL K+LYGLKQA RAW S+L+  LQ  GF  S
Sbjct: 541  HGYLEEEVYMRQPPGFENKGQ--PNYLCKLDKALYGLKQAPRAWYSRLSTKLQELGFISS 598

Query: 2953 KADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGI 2774
            KAD SLFF N     IFIL YVDDIIV  S A  +  ++ DL   F+LKDLG+L YFLGI
Sbjct: 599  KADTSLFFYNKGGCTIFILVYVDDIIVASSSAEVVAALLKDLEKDFALKDLGDLHYFLGI 658

Query: 2773 QVDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPI--SDASLYRK 2600
            +V     GL+L+Q  Y  D+L   GM   K  S+P+ +   LS  DG+ +  +DAS YR 
Sbjct: 659  EVKKVSQGLVLSQAWYASDILKRAGMSICKPASTPLSTTEKLSIEDGDFLGQNDASHYRS 718

Query: 2599 IVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLH 2420
            IVG+LQY T+TR D+S+ VNKV Q++ +P   HW AVKRILRY+ GT++ GL F K    
Sbjct: 719  IVGALQYLTLTRSDLSFLVNKVCQFLHSPTTVHWSAVKRILRYIKGTVEFGLRFGKSDSM 778

Query: 2419 RINTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATCD 2240
             I+ F+DADW    DDRRST G+ V+ G NL+SWSA+KQA VSRSSTEAEY+++A+AT +
Sbjct: 779  LISAFSDADWAGCSDDRRSTGGFAVFLGPNLISWSARKQATVSRSSTEAEYKALANATTE 838

Query: 2239 VFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQI 2060
            V W+  +L E+         +W DNLGA  LS NPVFH+RTKH E+D HF+RE+VAK+ +
Sbjct: 839  VTWVRKILDELRIARPSVAQLWCDNLGATYLSANPVFHARTKHIEIDYHFVREQVAKKLL 898

Query: 2059 SVQHIPGSEQVTDILTKPLTGQFFVRLRNKLNV 1961
             +Q I  ++Q+ D  TK L      + R+ LN+
Sbjct: 899  DIQFISTTDQLADGFTKSLPAPSLAQYRHNLNL 931



 Score = 79.0 bits (193), Expect = 1e-11
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
 Frame = -2

Query: 1444 QLITTKLTEVNFLVWKQQILAAINGYGLEGYLTGEISAPDQL------------TSEKTL 1301
            Q +T KLT+ N ++WK Q+LA + G  + G+L   I  P  +            T+EK  
Sbjct: 14   QAVTEKLTKANHVLWKAQVLATLRGAQMAGFLDRSIQPPPAIIILATKDKDGKETTEKVA 73

Query: 1300 NPAYGVWKRQDQVIASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKL 1121
            NP                              FT +  +WDA+ E F SQSRA+I+   +
Sbjct: 74   NPV---------------------------ATFTNAADVWDAIEEIFNSQSRARIINTHM 106

Query: 1120 QLQNLRKGTNSMREYLNRAKVCCDMLATIGYKLSEEEQIMYILTG 986
             L +  KG  S+ EY+ + K   D +A+ G  L +++ I +IL G
Sbjct: 107  ALSSTVKGNRSIAEYVGKMKGLADEMASAGKALDDDDLISHILAG 151


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  382 bits (981), Expect = e-103
 Identities = 189/393 (48%), Positives = 265/393 (67%), Gaps = 2/393 (0%)
 Frame = -2

Query: 3133 NGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLKQASRAWCSKLTKVLQSFGFTMS 2954
            +G ++ E+YM+Q PGF  +       VCKL+K+LYGLKQA RAW S+L+K L   GF  S
Sbjct: 1055 HGFLEEEVYMQQPPGFESSSK--PDYVCKLNKALYGLKQAPRAWYSRLSKKLTELGFEAS 1112

Query: 2953 KADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTVIDDLHSVFSLKDLGNLSYFLGI 2774
            KAD SLFF N     +F+L YVDDIIV  S   A   ++ DL+  F+LKDLG+L YFLGI
Sbjct: 1113 KADTSLFFLNKGGIIMFVLVYVDDIIVASSTEKATTALLKDLNKEFTLKDLGDLHYFLGI 1172

Query: 2773 QVDYTPNGLLLTQQKYIQDLLDSVGMKGAKGLSSPMVSRPLLSKHDGNPI--SDASLYRK 2600
            +V    NG++LTQ+KY  D+L  V M   K +S+P+     L+ ++G+P+  +DA+ YR 
Sbjct: 1173 EVTKVSNGVILTQEKYANDMLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRS 1232

Query: 2599 IVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKRILRYLAGTIDHGLLFTKGHLH 2420
            IVG+LQY T+TRPDI+YSVNKV Q++  P  SHW AVKRILRYL      GL   K    
Sbjct: 1233 IVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTSLGLHVHKSAST 1292

Query: 2419 RINTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKKQAVVSRSSTEAEYRSIASATCD 2240
             ++ ++DAD    +DDR+ST G+ V+ GSNLVSWSA+KQ  VSRSSTEAEY+++A+ T +
Sbjct: 1293 LVHGYSDADGAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAE 1352

Query: 2239 VFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFHSRTKHFELDLHFIREKVAKQQI 2060
            + W+ ++L+E+G +  K   +W DNLGA  LS NPVFH++TKH  +D HF+RE+V+++ +
Sbjct: 1353 LIWVQTVLKELGIESPKAAKIWCDNLGAKYLSANPVFHAKTKHIHVDYHFVRERVSQKLL 1412

Query: 2059 SVQHIPGSEQVTDILTKPLTGQFFVRLRNKLNV 1961
             +  +P  +QV D  TK L+ +     ++ LN+
Sbjct: 1413 EIDFVPSGDQVADGFTKALSARLLENFKHNLNL 1445



 Score =  102 bits (255), Expect = 8e-19
 Identities = 60/208 (28%), Positives = 109/208 (52%), Gaps = 8/208 (3%)
 Frame = -2

Query: 1507 MAAIKTPTNTLDQNQVIYPQSQLITTKLTEVNFLVWKQQILAAINGYGLEGYLTGEISAP 1328
            MA+  + + T   N +   Q   ++ KL + N  +WK Q+ AA++G  L GYL G+I AP
Sbjct: 1    MASSSSSSGTAAANLL---QGHSVSEKLGKANHALWKAQVSAAVHGARLLGYLNGDIKAP 57

Query: 1327 --------DQLTSEKTLNPAYGVWKRQDQVIASWXXXXXXXXXXITTVGFTTSKQIWDAL 1172
                    D  T+ K  NPA+  W+  DQ++  +          I      T+ + W  +
Sbjct: 58   NAEISVTIDGKTTTKP-NPAFEDWEANDQLVLGYLLSSLSRDVLIQVATCKTAAEAWRNI 116

Query: 1171 TEGFASQSRAKIMQYKLQLQNLRKGTNSMREYLNRAKVCCDMLATIGYKLSEEEQIMYIL 992
               +++ +RA+ +  +L L N +KGT  + EY+ + +  CD +A  G  L EE  + YI+
Sbjct: 117  EALYSTGTRARAVNTRLALTNTKKGTMKIAEYVAKMRALCDEMAAGGRPLDEEGLVQYII 176

Query: 991  TGLNAEYNAVVVSINSRVEPYTLMEVHA 908
             GLN +++ +V ++ ++ +P T+ E+++
Sbjct: 177  AGLNEDFSPIVSNLCNKSDPITVGELYS 204