BLASTX nr result
ID: Rauwolfia21_contig00052805
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00052805
(335 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE04935.2| OSJNBa0017P10.12 [Oryza sativa Japonica Group] g... 66 4e-09
gb|AAX95920.1| retrotransposon protein, putative, Ty3-gypsy sub-... 65 7e-09
gb|AAV32171.1| putative polyprotein [Oryza sativa Japonica Group] 65 7e-09
gb|AAX95257.1| retrotransposon protein, putative, Ty3-gypsy sub-... 65 9e-09
gb|ABB46832.2| retrotransposon protein, putative, Ty3-gypsy subc... 65 9e-09
emb|CAE03652.2| OSJNBa0060N03.17 [Oryza sativa Japonica Group] 65 9e-09
gb|AAK92604.1|AC078944_15 Putative retroelement [Oryza sativa Ja... 65 9e-09
gb|ABA98093.1| retrotransposon protein, putative, Ty3-gypsy subc... 65 1e-08
gb|ABA97501.1| retrotransposon protein, putative, Ty3-gypsy subc... 65 1e-08
gb|AAN01260.1| Putative retroelement [Oryza sativa Japonica Grou... 65 1e-08
emb|CAD40208.2| OSJNBa0019J05.6 [Oryza sativa Japonica Group] 65 1e-08
gb|ABA99505.1| retrotransposon protein, putative, Ty3-gypsy subc... 64 2e-08
gb|ABA98191.1| retrotransposon protein, putative, Ty3-gypsy subc... 64 2e-08
gb|ABA97771.1| retrotransposon protein, putative, Ty3-gypsy subc... 64 2e-08
gb|ABA96740.1| retrotransposon protein, putative, Ty3-gypsy subc... 64 2e-08
gb|ABA94359.1| retrotransposon protein, putative, Ty3-gypsy subc... 64 2e-08
emb|CAH66012.1| OSIGBa0093M15.2 [Oryza sativa Indica Group] 64 2e-08
emb|CAE02082.2| OSJNBa0074B10.10 [Oryza sativa Japonica Group] 64 2e-08
emb|CAE05093.3| OSJNBa0009K15.13 [Oryza sativa Japonica Group] 64 2e-08
gb|ABA97807.1| retrotransposon protein, putative, Ty3-gypsy subc... 64 3e-08
>emb|CAE04935.2| OSJNBa0017P10.12 [Oryza sativa Japonica Group]
gi|38567639|emb|CAE75877.1| B1234D02.1 [Oryza sativa
Japonica Group]
Length = 1742
Score = 66.2 bits (160), Expect = 4e-09
Identities = 43/104 (41%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAENRQGPNAK------VFALTEQDA-NVVTGTLLANLVPACV 159
PGH + P P PAEN A V A QDA +V+ GT L N VPA V
Sbjct: 587 PGHYADKCPKPRRVKVVPAENNSAVPASKARVNHVAAAEAQDAPDVILGTFLVNSVPAIV 646
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF++ SFV ++ L P VS PS + L +R
Sbjct: 647 LFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALSLQR 690
>gb|AAX95920.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group] gi|62734057|gb|AAX96166.1|
retrotransposon protein, putative, Ty3-gypsy sub-class
[Oryza sativa Japonica Group] gi|77550628|gb|ABA93425.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 919
Score = 65.5 bits (158), Expect = 7e-09
Identities = 43/106 (40%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAENRQ---GPNAKV---FALTEQDA-NVVTGTLLANLVPACV 159
PGH + P P PA++ P A+V A QDA +V+ GT L NLVPA V
Sbjct: 286 PGHYADKCPKPRRVKVVPAQSNSTAPAPKARVNHVAAAEAQDAPDVILGTFLVNLVPATV 345
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRRIL 297
LFD GA+HSF++ SF ++ L P VS PS + L +R L
Sbjct: 346 LFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSL 391
>gb|AAV32171.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1310
Score = 65.5 bits (158), Expect = 7e-09
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAENRQG---PNAKVFALTEQDAN---VVTGTLLANLVPACVL 162
PGH +YP P PA N P A+V + + N VV GT N +PA VL
Sbjct: 267 PGHYADKYPKPRRMKNAPAPNNSNAPAPKARVNHVAAEAQNAPDVVLGTFPVNSIPASVL 326
Query: 163 FDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKI 276
FD GA+HSF++ SF ++F+ L P V+ P ++
Sbjct: 327 FDSGATHSFLSKSFASNHGMEFISLGRPLLVNTPGNQV 364
>gb|AAX95257.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group] gi|77550597|gb|ABA93394.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1214
Score = 65.1 bits (157), Expect = 9e-09
Identities = 43/104 (41%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAE-NRQGPNAK-----VFALTEQDA-NVVTGTLLANLVPACV 159
PGH + P P PA+ N P +K V A QDA +V+ GT L NLVPA V
Sbjct: 574 PGHYADKCPKPRRVKVVPAQSNSTAPASKARVNHVAAAEAQDAPDVILGTFLVNLVPATV 633
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF++ SF ++ L P VS PS + L +R
Sbjct: 634 LFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR 677
>gb|ABB46832.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1662
Score = 65.1 bits (157), Expect = 9e-09
Identities = 43/104 (41%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAE-NRQGPNAK-----VFALTEQDA-NVVTGTLLANLVPACV 159
PGH + P P P + N P +K V A QDA +V+ GT L NLVPA V
Sbjct: 588 PGHYADKCPKPRRMKVVPVQSNSTAPASKARVNHVAAAEAQDAPDVILGTFLVNLVPATV 647
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF++ SF +K L P VS PS + L +R
Sbjct: 648 LFDSGATHSFLSMSFAGNHGMKVEDLRRPLMVSTPSNQALSLQR 691
>emb|CAE03652.2| OSJNBa0060N03.17 [Oryza sativa Japonica Group]
Length = 1634
Score = 65.1 bits (157), Expect = 9e-09
Identities = 42/104 (40%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAENRQGPNAK------VFALTEQDA-NVVTGTLLANLVPACV 159
PGH + P P PA+N A V A QDA +V+ GT L N VPA V
Sbjct: 555 PGHYADKCPKPRRVKVVPAQNNSAVPASKARVNHVAAAEAQDAPDVILGTFLVNSVPATV 614
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF++ SFV ++ L P VS PS + L +R
Sbjct: 615 LFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALSLQR 658
>gb|AAK92604.1|AC078944_15 Putative retroelement [Oryza sativa Japonica Group]
Length = 1571
Score = 65.1 bits (157), Expect = 9e-09
Identities = 43/104 (41%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAE-NRQGPNAK-----VFALTEQDA-NVVTGTLLANLVPACV 159
PGH + P P P + N P +K V A QDA +V+ GT L NLVPA V
Sbjct: 596 PGHYADKCPKPRRMKVVPVQSNSTAPASKARVNHVAAAEAQDAPDVILGTFLVNLVPATV 655
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF++ SF +K L P VS PS + L +R
Sbjct: 656 LFDSGATHSFLSMSFAGNHGMKVEDLRRPLMVSTPSNQALSLQR 699
>gb|ABA98093.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1424
Score = 64.7 bits (156), Expect = 1e-08
Identities = 43/104 (41%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAE-NRQGPNAK-----VFALTEQDA-NVVTGTLLANLVPACV 159
PGH + P P PA+ N P +K V A QDA +V+ GT L NLVPA V
Sbjct: 315 PGHYADKCPKPRRVKVVPAQSNSTVPASKARVNHVAAAEAQDAPDVILGTFLVNLVPATV 374
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF++ SF ++ L P VS PS + L +R
Sbjct: 375 LFDSGATHSFISMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR 418
>gb|ABA97501.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 595
Score = 64.7 bits (156), Expect = 1e-08
Identities = 43/104 (41%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAENRQ-GPNAK-----VFALTEQDA-NVVTGTLLANLVPACV 159
PGH + P P PA+N P +K V A Q A +V+ GT L N VPA V
Sbjct: 320 PGHYSDKCPKPRRVKVVPAQNNSTAPVSKARVNHVAAAEAQGAPDVILGTFLVNSVPATV 379
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF++ SF R ++ L P VS PS + L S+R
Sbjct: 380 LFDSGATHSFLSMSFARNHGMEVEDLRRPLMVSTPSNQALSSQR 423
>gb|AAN01260.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431346|gb|AAP53141.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1683
Score = 64.7 bits (156), Expect = 1e-08
Identities = 41/104 (39%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAENRQGPNAK------VFALTEQDA-NVVTGTLLANLVPACV 159
PGH + P P PA+N +A V A QDA +V+ GT L N VPA V
Sbjct: 593 PGHYADKCPKPRRVKVVPAQNNSAVSASKARVNHVAAAEAQDAPDVILGTFLVNSVPATV 652
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF++ SF ++ L P VS PS + L +R
Sbjct: 653 LFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR 696
>emb|CAD40208.2| OSJNBa0019J05.6 [Oryza sativa Japonica Group]
Length = 1616
Score = 64.7 bits (156), Expect = 1e-08
Identities = 41/104 (39%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAENRQGPNAK------VFALTEQDA-NVVTGTLLANLVPACV 159
PGH + P P PA+N A V A QDA +V+ GT L N VPA V
Sbjct: 461 PGHYADKCPKPRRVKVVPAQNNSAVPASKARVNHVAAAEAQDAPDVILGTFLVNSVPATV 520
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF++ SF +++ L P VS PS + L +R
Sbjct: 521 LFDSGATHSFLSMSFAGNHEMEVEDLRRPLMVSTPSNQALSLQR 564
>gb|ABA99505.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1307
Score = 64.3 bits (155), Expect = 2e-08
Identities = 43/104 (41%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAE-NRQGPNAK-----VFALTEQDA-NVVTGTLLANLVPACV 159
PGH + P P PA+ N P +K V A QDA +V+ GT L NLVPA V
Sbjct: 293 PGHYADKCPKPRRMKVVPAQSNSTVPASKARVNHVAAAEAQDAPDVILGTFLVNLVPATV 352
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF++ SF ++ L P VS PS + L +R
Sbjct: 353 LFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSMQR 396
>gb|ABA98191.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1412
Score = 64.3 bits (155), Expect = 2e-08
Identities = 41/104 (39%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAENRQGPNAK------VFALTEQDA-NVVTGTLLANLVPACV 159
PGH + P P PA+N A V A QDA +V+ GT L N VPA V
Sbjct: 317 PGHYADKCPKPRRVKVVPAQNNSAVPASKARVNHVAAAEAQDAPDVILGTFLVNSVPATV 376
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF++ SF ++ L P VS PS++ L +R
Sbjct: 377 LFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSDQALSLQR 420
>gb|ABA97771.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2174
Score = 64.3 bits (155), Expect = 2e-08
Identities = 41/104 (39%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAENRQGPNAK------VFALTEQDA-NVVTGTLLANLVPACV 159
PGH + P P PA+N A V A QDA +V+ GT L N VPA V
Sbjct: 1019 PGHYADKCPKPRRVKVVPAQNNSAVPASKARVNHVAAAEAQDAPDVILGTFLVNSVPATV 1078
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF+++SF ++ L P VS PS + L +R
Sbjct: 1079 LFDSGATHSFLSTSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR 1122
>gb|ABA96740.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1234
Score = 64.3 bits (155), Expect = 2e-08
Identities = 43/104 (41%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAE-NRQGPNAK-----VFALTEQDA-NVVTGTLLANLVPACV 159
PGH + P P PA+ N P +K V A QDA +V+ GT L NLVPA V
Sbjct: 243 PGHYADKCPKPRRVKVVPAQSNSTVPASKARVNHVAAAEAQDAPDVILGTFLVNLVPAAV 302
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF++ SF ++ L P VS PS + L +R
Sbjct: 303 LFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR 346
>gb|ABA94359.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1505
Score = 63.9 bits (154), Expect = 2e-08
Identities = 41/104 (39%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAENRQGPNAK------VFALTEQDA-NVVTGTLLANLVPACV 159
PGH + P P PA++ A V A QDA +V+ GT L NLVPA V
Sbjct: 621 PGHYADKCPKPRRVKVVPAQSNSAVPASKARVNHVAAAEAQDAPDVILGTFLVNLVPATV 680
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF++ SF ++ L P VS PS + L +R
Sbjct: 681 LFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR 724
>emb|CAH66012.1| OSIGBa0093M15.2 [Oryza sativa Indica Group]
Length = 1352
Score = 63.9 bits (154), Expect = 2e-08
Identities = 43/104 (41%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAE-NRQGPNAK-----VFALTEQDA-NVVTGTLLANLVPACV 159
PGH + P P PA+ N P +K V A QDA +V+ GT L NLVPA V
Sbjct: 275 PGHYADKCPKPRRVKVVPAQSNSTVPASKARVNHVAATEAQDAPDVILGTFLVNLVPATV 334
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF++ SF ++ L P VS PS + L +R
Sbjct: 335 LFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPSNQALSLQR 378
>emb|CAE02082.2| OSJNBa0074B10.10 [Oryza sativa Japonica Group]
Length = 720
Score = 63.9 bits (154), Expect = 2e-08
Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAENRQ---GPNAKVFALTEQDA----NVVTGTLLANLVPACV 159
PGH + P P P ++ P A+V +T +A +V+ GT L NLVPA V
Sbjct: 267 PGHYADKCPKPRRVKVVPTQSNSTAPAPKARVNHVTAAEAQDAPDVILGTFLVNLVPATV 326
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF++ SF ++ L P VS PS + L +R
Sbjct: 327 LFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR 370
>emb|CAE05093.3| OSJNBa0009K15.13 [Oryza sativa Japonica Group]
Length = 1480
Score = 63.9 bits (154), Expect = 2e-08
Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAE-NRQGPNAK-----VFALTEQDA-NVVTGTLLANLVPACV 159
PGH + P P PA+ N P +K V A QDA +V+ GT L NLVPA V
Sbjct: 480 PGHYADKCPKPRRVKVVPAQSNSTAPASKARVNHVAAAEAQDAPDVILGTFLVNLVPATV 539
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF++ SF ++ + P VS PS + L +R
Sbjct: 540 LFDSGATHSFLSMSFAGNHGMEVEDIRRPLLVSTPSNQALSLQR 583
>gb|ABA97807.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1188
Score = 63.5 bits (153), Expect = 3e-08
Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Frame = +1
Query: 1 PGHRVSEYPSPAPPLTRPAENRQ---GPNAKVFALTEQDA----NVVTGTLLANLVPACV 159
PGH + P P PA++ P A+V + +A +V+ GT L NLVPA V
Sbjct: 281 PGHYADKCPKPRRVKVVPAQSNSTAPAPKARVNHVAAAEAQGAPDVILGTFLVNLVPATV 340
Query: 160 LFDCGASHSFVASSFVRTQKLKFVPLDGPYRVSIPSEKILVSRR 291
LFD GA+HSF++ SF ++ L P VS PS + L +R
Sbjct: 341 LFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR 384