BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00051833
         (703 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]   258   1e-66
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   223   6e-56
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   191   2e-46
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   137   4e-30
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     134   3e-29
emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]   132   1e-28
emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]   132   1e-28
emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]   130   3e-28
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     130   4e-28
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        130   4e-28
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   130   4e-28
ref|NP_001174752.1| Os06g0316600 [Oryza sativa Japonica Group] g...   129   7e-28
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...   129   1e-27
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   127   3e-27
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                127   5e-27
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   126   8e-27
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   125   1e-26
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   125   1e-26
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   125   1e-26
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   124   2e-26

>emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]
          Length = 950

 Score =  258 bits (660), Expect = 1e-66
 Identities = 138/240 (57%), Positives = 164/240 (68%), Gaps = 6/240 (2%)
 Frame = -2

Query: 702 EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLV 523
           EDQA+ILLC LP SYE FVDT++YGR+SI  NDVK  LQSKEL+K VSGS E   + GL 
Sbjct: 142 EDQAMILLCSLPSSYENFVDTMMYGRBSISXNDVKDALQSKELQKLVSGSEEGSVETGLT 201

Query: 522 VSRGRNKERDXXXXXXXXXXXKVAGLRCFNCKEKGHLRRDCPYLXXXXXXXXXXXGSAAV 343
           VSRGR+ ER+           K A +RCF+ KEKGH R++CP                 V
Sbjct: 202 VSRGRSMERNGGGRSKSXSKSKAA-MRCFHXKEKGHFRKNCPQRQKGIGXGSNGNAQVVV 260

Query: 342 VQ------DSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTSFKDWNGSVKL 181
            Q      DSSDEGE              +W++DTGASYHM +S++LFT+FK+WNGSVKL
Sbjct: 261 AQKDSEKQDSSDEGEGGDVLTVSTSSSAESWILDTGASYHMAYSRDLFTTFKEWNGSVKL 320

Query: 180 GDDEELSVKGSGSVQIKMYDGIVRTLDAWYIPDLLKNLISLGTLDKQGYNYSGGDGHIRV 1
           GDD EL VKGSGSVQIKMYDG+VRTL+AWY+P L KNLIS+GTLDK GY +SG  G +RV
Sbjct: 321 GDDGELGVKGSGSVQIKMYDGLVRTLNAWYVPGLRKNLISVGTLDKNGYTFSGSGGVLRV 380


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  223 bits (567), Expect = 6e-56
 Identities = 117/214 (54%), Positives = 141/214 (65%), Gaps = 6/214 (2%)
 Frame = -2

Query: 624 ESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLVVSRGRNKERDXXXXXXXXXXXKVAGL 445
           +SI +NDVK  LQSKEL+K VSGS E   + GL VSRGR+ ER+           K A +
Sbjct: 300 DSISINDVKDALQSKELQKLVSGSGEGSVETGLTVSRGRSMERNGGGRSKSRSKSKAA-M 358

Query: 444 RCFNCKEKGHLRRDCPYLXXXXXXXXXXXGSAAVVQ------DSSDEGEXXXXXXXXXXX 283
           RCF+CKEKGH R++CP                 V Q      DSSDEGE           
Sbjct: 359 RCFHCKEKGHFRKNCPQRQKGIGQGSNGNAQVVVAQKDSEKQDSSDEGEGGDVLTVSTSS 418

Query: 282 XXXTWVMDTGASYHMTFSKELFTSFKDWNGSVKLGDDEELSVKGSGSVQIKMYDGIVRTL 103
              +W++DTGASYHM +S++LFT+FK+WNGSVKLGDD EL VKGSGSVQIKMYDG+VRTL
Sbjct: 419 SAESWILDTGASYHMAYSRDLFTTFKEWNGSVKLGDDGELGVKGSGSVQIKMYDGLVRTL 478

Query: 102 DAWYIPDLLKNLISLGTLDKQGYNYSGGDGHIRV 1
           +AWY+P L KNLIS+GTLDK GY +SG  G +RV
Sbjct: 479 NAWYVPGLRKNLISVGTLDKNGYTFSGSGGVLRV 512


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  191 bits (485), Expect = 2e-46
 Identities = 99/186 (53%), Positives = 121/186 (65%), Gaps = 7/186 (3%)
 Frame = -2

Query: 537  DAGLVVSRGRNKERDXXXXXXXXXXXKVAGLRCFNCKEKGHLRRDCPYLXXXXXXXXXXX 358
            + GL VSRGR+ ER+           K A +RCF+CKEKGH R++CP             
Sbjct: 525  ETGLTVSRGRSMERNGGGRSKSRPKSK-AEMRCFHCKEKGHFRKNCPQRQKGIGSGVGME 583

Query: 357  GSAAVVQ-------DSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTSFKDW 199
             +  VV        DSSDEGE              +W++DTGASYHM +S++LFT+FK+W
Sbjct: 584  IAQVVVAQKYXEKXDSSDEGEGGDVLTVSTSSSAESWILDTGASYHMAYSRDLFTTFKEW 643

Query: 198  NGSVKLGDDEELSVKGSGSVQIKMYDGIVRTLDAWYIPDLLKNLISLGTLDKQGYNYSGG 19
            NGSVKLGDD EL VKGSGSVQIKMYDG+VRTL+AWY+P L KNLIS+GTLDK GY +SG 
Sbjct: 644  NGSVKLGDDGELGVKGSGSVQIKMYDGLVRTLNAWYVPGLRKNLISVGTLDKNGYTFSGS 703

Query: 18   DGHIRV 1
             G +RV
Sbjct: 704  GGVLRV 709


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  137 bits (344), Expect = 4e-30
 Identities = 90/252 (35%), Positives = 127/252 (50%), Gaps = 18/252 (7%)
 Frame = -2

Query: 702 EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLV 523
           ED  +ILLC LP SY  F DT+LY R+++ + +V   L +KE  KK+  S    S    +
Sbjct: 83  EDLGLILLCSLPSSYANFRDTILYSRDTLTLQEVYDALHAKEKMKKMVPSEGSNSQPESL 142

Query: 522 VSRGRNKERDXXXXXXXXXXXKVAG--------LRCFNCKEKGHLRRDCPYL-------- 391
           V RGR +E++              G          C  CK  GH   DC  L        
Sbjct: 143 VVRGRQQEKNTDNKSRDKSSSGYRGRSKSRGRYKSCKYCKRGGHDISDCWKLQNKEKHKG 202

Query: 390 XXXXXXXXXXXGSAAVVQDSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTS 211
                      G AAV  D+  + E               W++DTG +YHM  +++ FT+
Sbjct: 203 NYKPKGKQEEQGKAAVATDNKPDAE-LLVAYAGCVQTSDEWLLDTGCTYHMCPNRDWFTT 261

Query: 210 FKD-WNGSVKLGDDEELSVKGSGSVQIKMYDGIVRTL-DAWYIPDLLKNLISLGTLDKQG 37
           ++    G+V +GD+    V G G++QIKM+DG +RTL D  +IP L +NLISL TLD++G
Sbjct: 262 YEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLSDVRHIPSLKRNLISLSTLDRKG 321

Query: 36  YNYSGGDGHIRV 1
           Y YSGGDG ++V
Sbjct: 322 YRYSGGDGILKV 333


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  134 bits (337), Expect = 3e-29
 Identities = 90/252 (35%), Positives = 127/252 (50%), Gaps = 18/252 (7%)
 Frame = -2

Query: 702 EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLV 523
           ED  +ILLC LP SY  F DT+LY R+++ + +V   L +KE  KK+  S    S A  +
Sbjct: 50  EDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGL 109

Query: 522 VSRGRNKERDXXXXXXXXXXXKVAG--------LRCFNCKEKGHLRRDCPYL-------- 391
           V RGR +E++              G          C  CK  GH   +C  L        
Sbjct: 110 VVRGRQQEKNTNNKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTR 169

Query: 390 XXXXXXXXXXXGSAAVVQDSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTS 211
                      G AAVV D   + E               W++DT  +YHM  +++ F +
Sbjct: 170 KYIPKGKKEEEGKAAVVTDEKSDAE-LLVAYAGCAQTSDQWILDTACTYHMCPNRDWFAT 228

Query: 210 FKD-WNGSVKLGDDEELSVKGSGSVQIKMYDGIVRT-LDAWYIPDLLKNLISLGTLDKQG 37
           ++    G+V +GDD    V G G+VQIKM+DG +RT LD  +IP+L ++LISL TLD++G
Sbjct: 229 YEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKG 288

Query: 36  YNYSGGDGHIRV 1
           Y YSGGDG ++V
Sbjct: 289 YKYSGGDGILKV 300


>emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]
          Length = 344

 Score =  132 bits (332), Expect = 1e-28
 Identities = 84/236 (35%), Positives = 130/236 (55%), Gaps = 2/236 (0%)
 Frame = -2

Query: 702 EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLV 523
           EDQAI L+C LP SYE+FVD ++YGR ++ + DV+  L S+ELKK V  S +  S  GL 
Sbjct: 96  EDQAIFLMCSLPNSYEHFVDIMMYGRGTLFIKDVRVALNSRELKKMVFKSRKYDSGEGL- 154

Query: 522 VSRGRNKERDXXXXXXXXXXXKVAGLRCFNCKEKGHLRRDCPYLXXXXXXXXXXXGSAAV 343
           V+RGR ++++           +    +CF CK++GH  ++ P             G A  
Sbjct: 155 VARGRTRKKNNGRRGRSRSKSR-GNNKCFKCKKEGHYVKNXPDRKGKENKRNYNSGDATF 213

Query: 342 VQDSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTSFKDWN-GSVKLGDDEE 166
            +++S+  +               W++D+G SYHM+ + + F++++  + G V +G+   
Sbjct: 214 AKENSNTTD---VLLVXVTNSDDEWILDSGCSYHMSPNGDWFSTYQPIDGGKVLMGNKVA 270

Query: 165 LSVKGSGSVQIKMYDGIVRTL-DAWYIPDLLKNLISLGTLDKQGYNYSGGDGHIRV 1
             V G   +QIKM+ GI+RTL +  ++P L KNLI L TLD  G  Y  G G +RV
Sbjct: 271 CKVVGIHXIQIKMHGGIIRTLTNVRHVPKLNKNLIFLRTLDSNGCIYKAGGGVLRV 326


>emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]
          Length = 777

 Score =  132 bits (331), Expect = 1e-28
 Identities = 82/236 (34%), Positives = 126/236 (53%), Gaps = 2/236 (0%)
 Frame = -2

Query: 702 EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLV 523
           ED+AIILL  LPKS ++F +TL YG++ I  +DV+  L +K L  K S     G      
Sbjct: 54  EDKAIILLNSLPKSLKHFKETLKYGKDDITFDDVQNALNAKVLDMKSSDKTNGGKSRSKS 113

Query: 522 VSRGRNKERDXXXXXXXXXXXKVAGLRCFNCKEKGHLRRDCPYLXXXXXXXXXXXGSAAV 343
            S+G+   R+               ++C++C + G +RR CP             GSAA+
Sbjct: 114 KSKGKKDYRN---------------VKCYHCNKIGQIRRICP--DRQQEEKTQAQGSAAI 156

Query: 342 VQDSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTSFKDWN-GSVKLGDDEE 166
           + D  D  E               WV+D+G +YHM   ++ F+S+++ N G + LG++  
Sbjct: 157 IDDGYDSTE---VLTIRLNPNHEEWVLDSGCTYHMCPRRDWFSSYQEVNGGKLLLGNNMS 213

Query: 165 LSVKGSGSVQIKMYDGIVRTL-DAWYIPDLLKNLISLGTLDKQGYNYSGGDGHIRV 1
            +V G G++ I M+DG  RTL +  ++PDL +NLISLGTLDK GYN+   +G + +
Sbjct: 214 CNVVGIGTMAINMHDGKTRTLKEVRHVPDLKRNLISLGTLDKSGYNFKAKNGKLTI 269


>emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]
          Length = 894

 Score =  130 bits (328), Expect = 3e-28
 Identities = 81/238 (34%), Positives = 124/238 (52%), Gaps = 4/238 (1%)
 Frame = -2

Query: 702 EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLV 523
           ED+AI+LL  L  SY    + ++YGR+ +  ++V+ +L ++EL K+     E+G    + 
Sbjct: 142 EDKAILLLTSLDASYTNMKEAIMYGRDILTFDEVQSILHARELHKQEESKEELGEGLNI- 200

Query: 522 VSRGRNKERD--XXXXXXXXXXXKVAGLRCFNCKEKGHLRRDCPYLXXXXXXXXXXXGSA 349
             RG++K+R+             K    +CF C ++GH ++DCP +           G A
Sbjct: 201 --RGKSKKREKKKGNNSKSRSKSKTKKFKCFICHKEGHFKKDCPDMRQNTXKKTMNEGDA 258

Query: 348 AVVQDSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTSFKDWNGS-VKLGDD 172
            ++ D  D                  W++D+G S+HM   K  F  FK+ NG  V LG++
Sbjct: 259 TMILDGYDNA---GVLNVAEVDSGKEWILDSGCSFHMCPIKAWFEDFKEANGGHVLLGNN 315

Query: 171 EELSVKGSGSVQIKMYDGIVRTL-DAWYIPDLLKNLISLGTLDKQGYNYSGGDGHIRV 1
           +   + G+G+V+IK YDGI R L D  YIP+L  NLISLG LDK GY +      +RV
Sbjct: 316 KHCKILGTGTVKIKHYDGIERVLEDIRYIPELKMNLISLGMLDKLGYTFKSEPNSLRV 373


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  130 bits (327), Expect = 4e-28
 Identities = 89/252 (35%), Positives = 126/252 (50%), Gaps = 18/252 (7%)
 Frame = -2

Query: 702 EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLV 523
           ED  +ILLC LP SY  F DT+LY  +++ + +V   L +KE  KK+  S    S A  +
Sbjct: 176 EDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGL 235

Query: 522 VSRGRNKERDXXXXXXXXXXXKVAG--------LRCFNCKEKGHLRRDCPYL-------- 391
           V RGR +E++              G          C  CK  GH   +C  L        
Sbjct: 236 VVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTG 295

Query: 390 XXXXXXXXXXXGSAAVVQDSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTS 211
                      G AAVV D   + E               W++DT  +YHM  +++ F +
Sbjct: 296 KYIPKGKKEEEGKAAVVTDEKSDTE-LLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFAT 354

Query: 210 FKD-WNGSVKLGDDEELSVKGSGSVQIKMYDGIVRTL-DAWYIPDLLKNLISLGTLDKQG 37
           ++    G+V +GDD    V G G+VQIKM+DG +RTL D  +IP+L ++LISL TLD++G
Sbjct: 355 YEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKG 414

Query: 36  YNYSGGDGHIRV 1
           Y YSGGDG ++V
Sbjct: 415 YKYSGGDGILKV 426


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  130 bits (327), Expect = 4e-28
 Identities = 89/252 (35%), Positives = 126/252 (50%), Gaps = 18/252 (7%)
 Frame = -2

Query: 702 EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLV 523
           +D A+ILLC LP SY  F DT+LY R+++ + +V   L +KE  KK+  S    S A  +
Sbjct: 141 KDLALILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGL 200

Query: 522 VSRGRNKERDXXXXXXXXXXXKVAG--------LRCFNCKEKGHLRRDCPYL-------- 391
           V RG  +E++              G          C  CK  GH    C  L        
Sbjct: 201 VVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTG 260

Query: 390 XXXXXXXXXXXGSAAVVQDSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTS 211
                      G AAVV D   + E               W++DT  +YHM  +++ F +
Sbjct: 261 KYIPKGKKEEEGKAAVVTDEKSDAE-LLVAYAGCAQTSDQWILDTACTYHMCPNRDWFAT 319

Query: 210 FK-DWNGSVKLGDDEELSVKGSGSVQIKMYDGIVRTL-DAWYIPDLLKNLISLGTLDKQG 37
           ++    G+V +GDD    V G G+VQIKM+DG +RTL D  +IP+L ++LISL TLD++G
Sbjct: 320 YEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKG 379

Query: 36  YNYSGGDGHIRV 1
           Y YSGGDG ++V
Sbjct: 380 YKYSGGDGILKV 391


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1312

 Score =  130 bits (327), Expect = 4e-28
 Identities = 89/252 (35%), Positives = 126/252 (50%), Gaps = 18/252 (7%)
 Frame = -2

Query: 702 EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLV 523
           ED  +ILLC LP SY  F DT+LY  +++ + +V   L +KE  KK+  S    S A  +
Sbjct: 176 EDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGL 235

Query: 522 VSRGRNKERDXXXXXXXXXXXKVAG--------LRCFNCKEKGHLRRDCPYL-------- 391
           V RGR +E++              G          C  CK  GH   +C  L        
Sbjct: 236 VVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTG 295

Query: 390 XXXXXXXXXXXGSAAVVQDSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTS 211
                      G AAVV D   + E               W++DT  +YHM  +++ F +
Sbjct: 296 KYIPKGKKEEEGKAAVVTDEKSDTE-LLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFAT 354

Query: 210 FKD-WNGSVKLGDDEELSVKGSGSVQIKMYDGIVRTL-DAWYIPDLLKNLISLGTLDKQG 37
           ++    G+V +GDD    V G G+VQIKM+DG +RTL D  +IP+L ++LISL TLD++G
Sbjct: 355 YEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKG 414

Query: 36  YNYSGGDGHIRV 1
           Y YSGGDG ++V
Sbjct: 415 YKYSGGDGILKV 426


>ref|NP_001174752.1| Os06g0316600 [Oryza sativa Japonica Group]
           gi|255676990|dbj|BAH93480.1| Os06g0316600 [Oryza sativa
           Japonica Group]
          Length = 759

 Score =  129 bits (325), Expect = 7e-28
 Identities = 84/243 (34%), Positives = 122/243 (50%), Gaps = 9/243 (3%)
 Frame = -2

Query: 702 EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKE-LKKKVSG-----SFEIG 541
           ED  ++LLC LP SY  F DT+   R+ + + +V   LQ++E +K  V G     ++   
Sbjct: 86  EDLGLLLLCSLPSSYAIFRDTIFLSRDELTLAEVYEALQNREKMKCMVRGRSEQRTYNDS 145

Query: 540 SDAGLVVSRGRNKERDXXXXXXXXXXXKVAGLRCFNCKEKGHLRRDCPYLXXXXXXXXXX 361
           +D     SRGR+K R                  C  CK+K H   +C  L          
Sbjct: 146 NDRDKSQSRGRSKPRGKKF--------------CKYCKKKNHFIEECWKLQNKEKRKYDG 191

Query: 360 XGSAAVVQDSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTSFKD-WNGSV- 187
             S     D+SD G+               W++DT  S+H+  +++ F+S+K   NG V 
Sbjct: 192 KASVVTSADNSDSGDCLVVFAGCVASHDE-WILDTACSFHICINRDWFSSYKSVQNGDVV 250

Query: 186 KLGDDEELSVKGSGSVQIKMYDGIVRTL-DAWYIPDLLKNLISLGTLDKQGYNYSGGDGH 10
           ++GDD    + G GSVQIK +DG+ RTL DA +IP + +NLISL TLD +GY YSG  G 
Sbjct: 251 RMGDDNPRGIMGIGSVQIKTHDGMTRTLKDARHIPGMARNLISLSTLDSEGYKYSGSGGV 310

Query: 9   IRV 1
           ++V
Sbjct: 311 VKV 313


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1138

 Score =  129 bits (323), Expect = 1e-27
 Identities = 86/252 (34%), Positives = 125/252 (49%), Gaps = 18/252 (7%)
 Frame = -2

Query: 702 EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLV 523
           ED  +ILLC LP SY  F DT+LY R+++ + +V   L +KE  KK+  S    S A  +
Sbjct: 83  EDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHTKEKMKKMVPSEGSNSQAEGL 142

Query: 522 VSRGRNKERDXXXXXXXXXXXKVAG--------LRCFNCKEKGHLRRDCPYL-------- 391
           V RGR ++++              G          C  CK  GH   +C  L        
Sbjct: 143 VVRGRQQKKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTR 202

Query: 390 XXXXXXXXXXXGSAAVVQDSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTS 211
                      G AA+V D   + E               W++DT  +YHM  +++ F +
Sbjct: 203 KYIPKGKKEEEGKAAIVTDEKSDAE-LLVAYAGCAQTSDQWILDTACTYHMCPNRDWFAT 261

Query: 210 FKD-WNGSVKLGDDEELSVKGSGSVQIKMYDGIVRTL-DAWYIPDLLKNLISLGTLDKQG 37
           ++    G+V +GDD    V G G VQIKM+DG +RTL D  + P+L ++LISL TLD++G
Sbjct: 262 YEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCIRTLSDVRHFPNLKRSLISLRTLDRKG 321

Query: 36  YNYSGGDGHIRV 1
           Y YSGGDG +++
Sbjct: 322 YKYSGGDGILKL 333


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  127 bits (320), Expect = 3e-27
 Identities = 77/236 (32%), Positives = 127/236 (53%), Gaps = 2/236 (0%)
 Frame = -2

Query: 702 EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLV 523
           ED A+ILL  LP S+E FV + + G++++ + +V+  L S+EL+ K +G+      +GL 
Sbjct: 139 EDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSALHSRELRHKANGTSTDIQPSGLF 198

Query: 522 VSRGRNKERDXXXXXXXXXXXKVAGLRCFNCKEKGHLRRDCPYLXXXXXXXXXXXGSAAV 343
            S  + ++             K   + C  CKEKGH + DCP              SAAV
Sbjct: 199 TSSRKGRKNGGKKNKPMSKGAKPDDV-CNYCKEKGHWKFDCP---KKKKQSEKQSVSAAV 254

Query: 342 VQDSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTSFKDWN-GSVKLGDDEE 166
            ++ ++  E               WV+D+GASYH+   +E FT+++  + GS+ + +   
Sbjct: 255 AEEDTNSEEDIALVADEHTHHSDVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSV 314

Query: 165 LSVKGSGSVQIKMYDGIVRTL-DAWYIPDLLKNLISLGTLDKQGYNYSGGDGHIRV 1
             V G+GS++I+ +DG   TL +  ++P + KNLISL  LD +G+++SG DG +RV
Sbjct: 315 CKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRV 370


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  127 bits (318), Expect = 5e-27
 Identities = 88/252 (34%), Positives = 124/252 (49%), Gaps = 18/252 (7%)
 Frame = -2

Query: 702 EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLV 523
           ED  +ILLC LP SY  F DT+LY R+++ + +V   L +KE  KK+  S    S A  +
Sbjct: 126 EDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGL 185

Query: 522 VSRGRNKERDXXXXXXXXXXXKVAG--------LRCFNCKEKGHLRRDCPYL-------- 391
           V +G  +E++              G          C  CK  GH    C  L        
Sbjct: 186 VVQGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTG 245

Query: 390 XXXXXXXXXXXGSAAVVQDSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTS 211
                      G AAVV D   + E               W++DT  +YHM  +++ F +
Sbjct: 246 KYIPKGKKEDEGKAAVVTDEKSDAE-LLVAYAGCAQTSDQWILDTACTYHMCPNRDWFAT 304

Query: 210 FK-DWNGSVKLGDDEELSVKGSGSVQIKMYDGIVRTL-DAWYIPDLLKNLISLGTLDKQG 37
           ++    G+V +GDD    V G G+VQIKM+DG +RTL D  +IP+L ++LISL TLD +G
Sbjct: 305 YEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKG 364

Query: 36  YNYSGGDGHIRV 1
           Y YSGGDG ++V
Sbjct: 365 YKYSGGDGILKV 376


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1175

 Score =  126 bits (316), Expect = 8e-27
 Identities = 82/243 (33%), Positives = 119/243 (48%), Gaps = 9/243 (3%)
 Frame = -2

Query: 702 EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLV 523
           ED  ++LLC LP SY  F DT+L  R  + + +V   LQ++E  K +  S    S    +
Sbjct: 38  EDLGLLLLCSLPSSYANFRDTILLSRSELTLAEVYEALQNREKMKGMVQSDASSSKGEAL 97

Query: 522 VSRGRNKER------DXXXXXXXXXXXKVAGLRCFNCKEKGHLRRDCPYLXXXXXXXXXX 361
             RGR+++R      D                 C  CK+K H   +C  L          
Sbjct: 98  QVRGRSEQRTYNDSNDRDKNQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQNKEKRKSDG 157

Query: 360 XGSAAVVQDSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTSFKD-WNGS-V 187
             S     D+SD G+               W++DT  S+H+  +++ F+S+K   NG  V
Sbjct: 158 KASVVTSADNSDSGD-CLVVFVVCVSSHDEWILDTTCSFHICINRDWFSSYKSVQNGDVV 216

Query: 186 KLGDDEELSVKGSGSVQIKMYDGIVRTL-DAWYIPDLLKNLISLGTLDKQGYNYSGGDGH 10
           ++GDD    + G GSVQIK +DG+ RTL D  +IP + +NLISL TLD +GY YSG  G 
Sbjct: 217 RMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGGV 276

Query: 9   IRV 1
           ++V
Sbjct: 277 VKV 279


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  125 bits (314), Expect = 1e-26
 Identities = 87/252 (34%), Positives = 124/252 (49%), Gaps = 18/252 (7%)
 Frame = -2

Query: 702  EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLV 523
            ED  +ILLC LP SY  F DT+LY R+++ + +V   L  KE  KK+  S    S A  +
Sbjct: 348  EDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGL 407

Query: 522  VSRGRNKERDXXXXXXXXXXXKVAG--------LRCFNCKEKGHLRRDCPYL-------- 391
            +  GR +E++              G          C  CK  GH   +C  L        
Sbjct: 408  IVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKDKRTG 467

Query: 390  XXXXXXXXXXXGSAAVVQDSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTS 211
                       G AAVV D   + E               W+++T   YHM  +++ F +
Sbjct: 468  KYVPKGKKEEEGKAAVVTDEKSDAE-LLVAYAGCAQTSDQWILNTACIYHMCPNRDWFAT 526

Query: 210  FKDWN-GSVKLGDDEELSVKGSGSVQIKMYDGIVRTL-DAWYIPDLLKNLISLGTLDKQG 37
            ++    G+V +GDD    V G G+VQIKM+DG +RTL D  +IP+L ++LISL TLD++G
Sbjct: 527  YEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKG 586

Query: 36   YNYSGGDGHIRV 1
            Y YSGGDG ++V
Sbjct: 587  YKYSGGDGILKV 598


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
           gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
           Japonica Group]
          Length = 1601

 Score =  125 bits (314), Expect = 1e-26
 Identities = 87/252 (34%), Positives = 124/252 (49%), Gaps = 18/252 (7%)
 Frame = -2

Query: 702 EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLV 523
           ED  +ILLC LP SY  F DT+LY R+++ + +V   L  KE  KK+  S    S A  +
Sbjct: 141 EDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGL 200

Query: 522 VSRGRNKERDXXXXXXXXXXXKVAG--------LRCFNCKEKGHLRRDCPYL-------- 391
           +  GR +E++              G          C  CK  GH   +C  L        
Sbjct: 201 IVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKDKRTG 260

Query: 390 XXXXXXXXXXXGSAAVVQDSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTS 211
                      G AAVV D   + E               W+++T   YHM  +++ F +
Sbjct: 261 KYVPKGKKEEEGKAAVVTDEKSDAE-LLVAYAGCAQTSDQWILNTACIYHMCPNRDWFAT 319

Query: 210 FKDWN-GSVKLGDDEELSVKGSGSVQIKMYDGIVRTL-DAWYIPDLLKNLISLGTLDKQG 37
           ++    G+V +GDD    V G G+VQIKM+DG +RTL D  +IP+L ++LISL TLD++G
Sbjct: 320 YEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKG 379

Query: 36  YNYSGGDGHIRV 1
           Y YSGGDG ++V
Sbjct: 380 YKYSGGDGILKV 391


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|53370655|gb|AAU89150.1| integrase core domain
           containing protein [Oryza sativa Japonica Group]
           gi|108710286|gb|ABF98081.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1322

 Score =  125 bits (314), Expect = 1e-26
 Identities = 78/243 (32%), Positives = 118/243 (48%), Gaps = 9/243 (3%)
 Frame = -2

Query: 702 EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLV 523
           ED  ++LLC LP SY  F  T+L  R+ + + +V   LQ++E  K +  S+   S    +
Sbjct: 143 EDLGLLLLCSLPSSYANFRHTILLSRDELTLAEVYEALQNREKMKGMVQSYASSSKGEAL 202

Query: 522 VSRGRNKER------DXXXXXXXXXXXKVAGLRCFNCKEKGHLRRDCPYLXXXXXXXXXX 361
             RGR+++R      D                 C  CK+K H   +C  L          
Sbjct: 203 QVRGRSEQRTYNDSNDHDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQNKEKRKSDG 262

Query: 360 XGSAAVVQDSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTSFKDWNGS--V 187
             S     ++SD G+               W++DT  S+H+  +++ F+S+K       V
Sbjct: 263 KASVVTSAENSDSGDCLVVFAGYVASHDE-WILDTACSFHICINRDWFSSYKSVQNEDVV 321

Query: 186 KLGDDEELSVKGSGSVQIKMYDGIVRTL-DAWYIPDLLKNLISLGTLDKQGYNYSGGDGH 10
           ++GDD    + G GSVQIK +DG+ RTL D  +IP + +NLISL TLD +GY YSG  G 
Sbjct: 322 RMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGV 381

Query: 9   IRV 1
           ++V
Sbjct: 382 VKV 384


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score =  124 bits (312), Expect = 2e-26
 Identities = 81/243 (33%), Positives = 121/243 (49%), Gaps = 9/243 (3%)
 Frame = -2

Query: 702 EDQAIILLCFLPKSYEYFVDTLLYGRESICVNDVKGVLQSKELKKKVSGSFEIGSDAGLV 523
           ED  ++LLC LP SYE F DT+L  R+ + + +V   LQ++E  K +  S    S    +
Sbjct: 143 EDLGLLLLCSLPSSYENFRDTILLSRDELTLAEVYEALQNREKMKGMVQSDASSSKGEAL 202

Query: 522 VSRGRNKER------DXXXXXXXXXXXKVAGLRCFNCKEKGHLRRDCPYLXXXXXXXXXX 361
             +GR+++R      D                 C  CK+K H  ++C  L          
Sbjct: 203 QVKGRSEQRTYNDSNDRDKSKSRGRSKSRGKKFCKYCKKKIHFIKECWKLQNKEKRKSDG 262

Query: 360 XGSAAVVQDSSDEGEXXXXXXXXXXXXXXTWVMDTGASYHMTFSKELFTSFKD-WNGS-V 187
             S      +SD G+               W++DT  S+H+  +++ F+S+K   NG  V
Sbjct: 263 KASVVTSAKNSDSGD-CLVVFAGCVASHDEWILDTACSFHIYINRDWFSSYKSVQNGDVV 321

Query: 186 KLGDDEELSVKGSGSVQIKMYDGIVRTL-DAWYIPDLLKNLISLGTLDKQGYNYSGGDGH 10
           ++G+D    + G GSVQIK +DGI RTL D  +IP + +NLISL TLD +GY YSG  G 
Sbjct: 322 RMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGV 381

Query: 9   IRV 1
           ++V
Sbjct: 382 VKV 384