BLASTX nr result
ID: Rauwolfia21_contig00051629
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00051629
(283 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004513901.1| PREDICTED: chlorophyll a-b binding protein P... 110 2e-22
gb|ACJ85068.1| unknown [Medicago truncatula] gi|388507876|gb|AFK... 107 1e-21
ref|XP_004236014.1| PREDICTED: chlorophyll a-b binding protein P... 107 2e-21
gb|AGZ15388.1| PSI light-harvesting antenna chlorophyll a/b-bind... 106 3e-21
gb|AGV54882.1| chlorophyll A/B binding protein P4 chloroplastic-... 106 3e-21
gb|AGV54430.1| chlorophyll A/B binding protein [Phaseolus vulgar... 106 3e-21
gb|AFK37078.1| unknown [Lotus japonicus] 106 4e-21
ref|XP_003527087.2| PREDICTED: chlorophyll a-b binding protein P... 105 5e-21
ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4... 105 6e-21
ref|NP_001275056.1| chlorophyll a-b binding protein 4, chloropla... 105 6e-21
ref|XP_003523016.2| PREDICTED: chlorophyll a-b binding protein P... 104 1e-20
ref|XP_006477466.1| PREDICTED: chlorophyll a-b binding protein P... 102 4e-20
sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding prote... 102 7e-20
pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I gi|268... 102 7e-20
emb|CBI15210.3| unnamed protein product [Vitis vinifera] 101 1e-19
ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P... 100 2e-19
emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris] 100 3e-19
ref|XP_002514741.1| chlorophyll A/B binding protein, putative [R... 99 8e-19
gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Caps... 98 1e-18
ref|XP_006394395.1| hypothetical protein EUTSA_v10005046mg [Eutr... 97 2e-18
>ref|XP_004513901.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cicer arietinum]
Length = 252
Score = 110 bits (275), Expect = 2e-22
Identities = 53/76 (69%), Positives = 59/76 (77%)
Frame = +3
Query: 54 MSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWLPGL 233
M+TVTTQAS A+FRPCASKSRFL+GSSGKL RE +EAKKG+WLPGL
Sbjct: 1 MTTVTTQASAAIFRPCASKSRFLTGSSGKLNREVAIRPIGFSPSASFKVEAKKGEWLPGL 60
Query: 234 ASPGYLTGSLPGDNGF 281
+SPGYLTGSLPGDNGF
Sbjct: 61 SSPGYLTGSLPGDNGF 76
>gb|ACJ85068.1| unknown [Medicago truncatula] gi|388507876|gb|AFK42004.1| unknown
[Medicago truncatula]
Length = 253
Score = 107 bits (268), Expect = 1e-21
Identities = 52/76 (68%), Positives = 57/76 (75%)
Frame = +3
Query: 54 MSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWLPGL 233
M+TVTTQAS A+FRPC KSRFL+GSSGKL RE +EAKKG+WLPGL
Sbjct: 1 MATVTTQASAAIFRPCGLKSRFLTGSSGKLNREVAIRPMGCSPSASFKVEAKKGEWLPGL 60
Query: 234 ASPGYLTGSLPGDNGF 281
ASPGYLTGSLPGDNGF
Sbjct: 61 ASPGYLTGSLPGDNGF 76
>ref|XP_004236014.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Solanum lycopersicum]
Length = 287
Score = 107 bits (267), Expect = 2e-21
Identities = 54/91 (59%), Positives = 64/91 (70%)
Frame = +3
Query: 9 PCLRSISVVGIQIREMSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXX 188
P L I+ ++ +M+TVTTQAS A+FRPCAS++RFL+GSSGKL RE
Sbjct: 22 PFLPIITNKLFKLEKMATVTTQASAAIFRPCASRTRFLTGSSGKLNREVSFRPSTFSSYN 81
Query: 189 XXXIEAKKGQWLPGLASPGYLTGSLPGDNGF 281
+EAKKGQWLPGLASP YL GSLPGDNGF
Sbjct: 82 SFKVEAKKGQWLPGLASPDYLDGSLPGDNGF 112
>gb|AGZ15388.1| PSI light-harvesting antenna chlorophyll a/b-binding protein
[Phaseolus vulgaris]
Length = 252
Score = 106 bits (265), Expect = 3e-21
Identities = 52/76 (68%), Positives = 57/76 (75%)
Frame = +3
Query: 54 MSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWLPGL 233
M+TVTTQAS A+FRPCASKSRFL+GSSGKL RE +EAKKG+WLPGL
Sbjct: 1 MATVTTQASAAIFRPCASKSRFLTGSSGKLNREVSMRPMGCPPSASFKVEAKKGEWLPGL 60
Query: 234 ASPGYLTGSLPGDNGF 281
ASP YL GSLPGDNGF
Sbjct: 61 ASPTYLNGSLPGDNGF 76
>gb|AGV54882.1| chlorophyll A/B binding protein P4 chloroplastic-like protein
[Phaseolus vulgaris]
Length = 252
Score = 106 bits (265), Expect = 3e-21
Identities = 52/76 (68%), Positives = 57/76 (75%)
Frame = +3
Query: 54 MSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWLPGL 233
M+TVTTQAS A+FRPCASKSRFL+GSSGKL RE +EAKKG+WLPGL
Sbjct: 1 MATVTTQASAAIFRPCASKSRFLTGSSGKLNREVSMRPMGCPPSASFKVEAKKGEWLPGL 60
Query: 234 ASPGYLTGSLPGDNGF 281
ASP YL GSLPGDNGF
Sbjct: 61 ASPTYLNGSLPGDNGF 76
>gb|AGV54430.1| chlorophyll A/B binding protein [Phaseolus vulgaris]
gi|561011261|gb|ESW10168.1| hypothetical protein
PHAVU_009G186500g [Phaseolus vulgaris]
Length = 252
Score = 106 bits (265), Expect = 3e-21
Identities = 52/76 (68%), Positives = 57/76 (75%)
Frame = +3
Query: 54 MSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWLPGL 233
M+TVTTQAS A+FRPCASKSRFL+GSSGKL RE +EAKKG+WLPGL
Sbjct: 1 MATVTTQASAAIFRPCASKSRFLTGSSGKLNREVSMRPMGCPPSASFKVEAKKGEWLPGL 60
Query: 234 ASPGYLTGSLPGDNGF 281
ASP YL GSLPGDNGF
Sbjct: 61 ASPTYLNGSLPGDNGF 76
>gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 106 bits (264), Expect = 4e-21
Identities = 51/76 (67%), Positives = 57/76 (75%)
Frame = +3
Query: 54 MSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWLPGL 233
M+TVTTQAS A+FRPCAS+SRFL+GSSGKL RE +EAKKG+WLPGL
Sbjct: 1 MATVTTQASAAIFRPCASRSRFLTGSSGKLNREVAFRPMGCPPSTSFKVEAKKGEWLPGL 60
Query: 234 ASPGYLTGSLPGDNGF 281
ASP YL GSLPGDNGF
Sbjct: 61 ASPNYLNGSLPGDNGF 76
>ref|XP_003527087.2| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic
[Glycine max]
Length = 292
Score = 105 bits (263), Expect = 5e-21
Identities = 51/79 (64%), Positives = 58/79 (73%)
Frame = +3
Query: 45 IREMSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWL 224
+ M+TVTTQAS A+FRPCASKSRFL+GSSGKL RE +EAKKG+WL
Sbjct: 38 VTTMATVTTQASAAIFRPCASKSRFLTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWL 97
Query: 225 PGLASPGYLTGSLPGDNGF 281
PGLASP YL G+LPGDNGF
Sbjct: 98 PGLASPTYLNGTLPGDNGF 116
>ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera] gi|147843386|emb|CAN79984.1| hypothetical
protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 105 bits (262), Expect = 6e-21
Identities = 52/76 (68%), Positives = 57/76 (75%)
Frame = +3
Query: 54 MSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWLPGL 233
M+TVTTQAS AVFRPCASKSRFL+GSSGKL RE +EAKKG+WLPGL
Sbjct: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLGREVSVKPMTSSSYRSFKVEAKKGEWLPGL 60
Query: 234 ASPGYLTGSLPGDNGF 281
+SP YL GSLPGDNGF
Sbjct: 61 SSPSYLDGSLPGDNGF 76
>ref|NP_001275056.1| chlorophyll a-b binding protein 4, chloroplastic-like [Solanum
tuberosum] gi|100801744|emb|CAK24966.1| chlorophyll a/b
binding protein [Solanum tuberosum]
Length = 251
Score = 105 bits (262), Expect = 6e-21
Identities = 51/76 (67%), Positives = 57/76 (75%)
Frame = +3
Query: 54 MSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWLPGL 233
M+TVTTQAS A+FRPCAS++RFL+GSSGKL RE +EAKKGQWLPGL
Sbjct: 1 MATVTTQASAAIFRPCASRTRFLTGSSGKLNREVSFRPSTSSSYNSFKVEAKKGQWLPGL 60
Query: 234 ASPGYLTGSLPGDNGF 281
ASP YL GSLPGDNGF
Sbjct: 61 ASPDYLDGSLPGDNGF 76
>ref|XP_003523016.2| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic
[Glycine max]
Length = 291
Score = 104 bits (259), Expect = 1e-20
Identities = 50/79 (63%), Positives = 57/79 (72%)
Frame = +3
Query: 45 IREMSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWL 224
+ M+TVTTQAS A+FRPC SKSRFL+GSSGKL RE +EAKKG+WL
Sbjct: 37 VAAMATVTTQASAAIFRPCTSKSRFLTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWL 96
Query: 225 PGLASPGYLTGSLPGDNGF 281
PGLASP YL G+LPGDNGF
Sbjct: 97 PGLASPTYLNGTLPGDNGF 115
>ref|XP_006477466.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Citrus sinensis]
Length = 250
Score = 102 bits (255), Expect = 4e-20
Identities = 53/76 (69%), Positives = 57/76 (75%)
Frame = +3
Query: 54 MSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWLPGL 233
M+TVTTQAS AVFRPCASKSRFL+GSSGKL RE +EAKKG+WLPGL
Sbjct: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLNRE--VALKPVSSSASFKVEAKKGEWLPGL 58
Query: 234 ASPGYLTGSLPGDNGF 281
ASP YL GSLPGDNGF
Sbjct: 59 ASPTYLNGSLPGDNGF 74
>sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna
chlorophyll a/b-binding protein [Pisum sativum]
Length = 252
Score = 102 bits (253), Expect = 7e-20
Identities = 50/76 (65%), Positives = 54/76 (71%)
Frame = +3
Query: 54 MSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWLPGL 233
M+TVTTQAS A+F PC KSRFL GSSGKL R +EAKKG+WLPGL
Sbjct: 1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGL 60
Query: 234 ASPGYLTGSLPGDNGF 281
ASPGYLTGSLPGDNGF
Sbjct: 61 ASPGYLTGSLPGDNGF 76
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant
Photosystem I gi|268612197|pdb|2WSF|4 Chain 4, Improved
Model Of Plant Photosystem I
Length = 251
Score = 102 bits (253), Expect = 7e-20
Identities = 50/76 (65%), Positives = 54/76 (71%)
Frame = +3
Query: 54 MSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWLPGL 233
M+TVTTQAS A+F PC KSRFL GSSGKL R +EAKKG+WLPGL
Sbjct: 1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGL 60
Query: 234 ASPGYLTGSLPGDNGF 281
ASPGYLTGSLPGDNGF
Sbjct: 61 ASPGYLTGSLPGDNGF 76
>emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 101 bits (251), Expect = 1e-19
Identities = 52/76 (68%), Positives = 57/76 (75%)
Frame = +3
Query: 54 MSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWLPGL 233
M+TVTTQAS AVFRPCASKSRFL+GSSGKL RE +EAKKG+WLPGL
Sbjct: 1 MATVTTQASAAVFRPCASKSRFLTGSSGKLGRE---VSVKPMTSSSFKVEAKKGEWLPGL 57
Query: 234 ASPGYLTGSLPGDNGF 281
+SP YL GSLPGDNGF
Sbjct: 58 SSPSYLDGSLPGDNGF 73
>ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus] gi|449477217|ref|XP_004154963.1|
PREDICTED: chlorophyll a-b binding protein P4,
chloroplastic-like [Cucumis sativus]
Length = 252
Score = 100 bits (249), Expect = 2e-19
Identities = 50/76 (65%), Positives = 55/76 (72%)
Frame = +3
Query: 54 MSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWLPGL 233
M+TVTTQAS AVFRPCA++SRFLSGSSGKL R +EAKKG+WLPGL
Sbjct: 1 MATVTTQASAAVFRPCAARSRFLSGSSGKLQRVLSVKPVSASSSSSFKVEAKKGEWLPGL 60
Query: 234 ASPGYLTGSLPGDNGF 281
SP YL GSLPGDNGF
Sbjct: 61 PSPMYLNGSLPGDNGF 76
>emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 100 bits (248), Expect = 3e-19
Identities = 48/76 (63%), Positives = 55/76 (72%)
Frame = +3
Query: 54 MSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWLPGL 233
M+ VTTQAS+A FRPCASKSRFL+G+ GKL +E +EAKKG+WLPGL
Sbjct: 1 MAAVTTQASIAGFRPCASKSRFLTGAPGKLNKECGVRLPSTSSTNSLKVEAKKGEWLPGL 60
Query: 234 ASPGYLTGSLPGDNGF 281
ASP YL GSLPGDNGF
Sbjct: 61 ASPAYLNGSLPGDNGF 76
>ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding
protein, putative [Ricinus communis]
Length = 251
Score = 98.6 bits (244), Expect = 8e-19
Identities = 51/76 (67%), Positives = 54/76 (71%)
Frame = +3
Query: 54 MSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWLPGL 233
M+TVTTQAS AVFRPCASKSRFLSGS KL RE +EAKKG+WLPGL
Sbjct: 1 MATVTTQASAAVFRPCASKSRFLSGSPSKLNRE-VAFKPMSSSPASFKVEAKKGEWLPGL 59
Query: 234 ASPGYLTGSLPGDNGF 281
SP YL GSLPGDNGF
Sbjct: 60 PSPAYLNGSLPGDNGF 75
>gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 97.8 bits (242), Expect = 1e-18
Identities = 48/76 (63%), Positives = 56/76 (73%)
Frame = +3
Query: 54 MSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXXIEAKKGQWLPGL 233
M+T TTQAS A+FRPCA+++RFL+GSSGKL RE +EAKKG+WLPGL
Sbjct: 1 MATATTQASAAIFRPCATRTRFLTGSSGKLNREVSFRPSTSNNSFK--VEAKKGEWLPGL 58
Query: 234 ASPGYLTGSLPGDNGF 281
ASP YL GSLPGDNGF
Sbjct: 59 ASPAYLDGSLPGDNGF 74
>ref|XP_006394395.1| hypothetical protein EUTSA_v10005046mg [Eutrema salsugineum]
gi|557091034|gb|ESQ31681.1| hypothetical protein
EUTSA_v10005046mg [Eutrema salsugineum]
Length = 162
Score = 97.4 bits (241), Expect = 2e-18
Identities = 50/77 (64%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Frame = +3
Query: 54 MSTVTTQASLAVFRPCASKSRFLSGSSGKLTREXXXXXXXXXXXXXXX-IEAKKGQWLPG 230
M+TVTTQA AVFRPCAS+ RFL+GSSG+L R+ IEAKKG+WLPG
Sbjct: 1 MATVTTQAPAAVFRPCASRMRFLTGSSGRLNRDLSVKPIGSSTNTASFKIEAKKGEWLPG 60
Query: 231 LASPGYLTGSLPGDNGF 281
LASPGYLTGSL GDNGF
Sbjct: 61 LASPGYLTGSLAGDNGF 77