BLASTX nr result
ID: Rauwolfia21_contig00046394
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00046394
(335 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa] 142 5e-32
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 139 3e-31
ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624... 139 4e-31
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol... 137 1e-30
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 137 1e-30
gb|AAB82754.1| retrofit [Oryza longistaminata] 137 2e-30
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 137 2e-30
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 136 3e-30
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 135 7e-30
emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera] 135 7e-30
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 134 1e-29
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 134 1e-29
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera] 133 2e-29
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera] 133 2e-29
gb|AAU90262.1| integrase core domain containing protein [Oryza s... 133 2e-29
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera] 133 3e-29
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group... 133 3e-29
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera] 132 4e-29
gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subc... 132 4e-29
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group... 132 5e-29
>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
Length = 1384
Score = 142 bits (358), Expect = 5e-32
Identities = 63/109 (57%), Positives = 84/109 (77%)
Frame = +3
Query: 9 GLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCLC 188
GL LL+ A +P +W+++F+TAVY+INRLP LNY SPYE+L R P + LK FGC C
Sbjct: 571 GLTLLAHAHMPSTYWVDSFNTAVYIINRLPSRVLNYASPYEQLFHRVPQYHSLKVFGCAC 630
Query: 189 FPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
FP+L P+NS KLQ +S +CVFLGY+ +++GY+C D SSG+V +SRHVLF
Sbjct: 631 FPYLRPYNSSKLQLRSKRCVFLGYSLNHQGYRCFDPSSGRVYLSRHVLF 679
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108706314|gb|ABF94109.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1247
Score = 139 bits (351), Expect = 3e-31
Identities = 62/110 (56%), Positives = 83/110 (75%)
Frame = +3
Query: 6 MGLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCL 185
MGL LL+ +S+P+KFW EAF++AVYLINR P L Y +P ERL + PD+ L+ FGC
Sbjct: 424 MGLALLAYSSMPLKFWDEAFTSAVYLINRTPSRLLKYATPLERLFKQTPDYNLLRVFGCA 483
Query: 186 CFPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
C+PHL P+N+ KLQ +S +C FLGY+P +KG+KCLD S+G+V IS V+F
Sbjct: 484 CWPHLRPYNARKLQFRSKQCTFLGYSPLHKGFKCLDPSTGRVYISHDVIF 533
>ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624640 [Citrus sinensis]
Length = 1682
Score = 139 bits (350), Expect = 4e-31
Identities = 64/110 (58%), Positives = 85/110 (77%)
Frame = +3
Query: 6 MGLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCL 185
+GL LL+QA+LP+KFW AF TAV+LINRLP LN ISPY++L + PD+ L+ FGC
Sbjct: 92 IGLTLLAQANLPLKFWWNAFHTAVFLINRLPTPTLNNISPYQKLFQQVPDYVSLRVFGCA 151
Query: 186 CFPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
CFP+L P+N HKL +S +CVF+GY+ S+KGY+CL SSG+V +S HV+F
Sbjct: 152 CFPYLRPYNRHKLSFRSNRCVFIGYSSSHKGYQCLH-SSGRVYVSNHVIF 200
>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 969
Score = 137 bits (346), Expect = 1e-30
Identities = 62/110 (56%), Positives = 84/110 (76%)
Frame = +3
Query: 6 MGLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCL 185
+GL LL+ AS+P+KFW EAF A YLINR P LN +P+ERL + PD+ L+ FGC+
Sbjct: 473 VGLSLLAHASMPLKFWDEAFLAAAYLINRTPTKILNLDTPFERLFHKQPDYSVLRIFGCV 532
Query: 186 CFPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
C+P+L P+NSHKLQ +S +CVFLGY+ +KG+KCLD+S+G+V +SR V F
Sbjct: 533 CWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGFKCLDVSTGRVYVSRDVTF 582
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 1313
Score = 137 bits (346), Expect = 1e-30
Identities = 62/110 (56%), Positives = 84/110 (76%)
Frame = +3
Query: 6 MGLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCL 185
+GL LL+ AS+P+KFW EAF A YLINR P LN +P+ERL + PD+ L+ FGC+
Sbjct: 473 VGLSLLAHASMPLKFWDEAFLAAAYLINRTPTKILNLDTPFERLFHKQPDYSVLRIFGCV 532
Query: 186 CFPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
C+P+L P+NSHKLQ +S +CVFLGY+ +KG+KCLD+S+G+V +SR V F
Sbjct: 533 CWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGFKCLDVSTGRVYVSRDVTF 582
>gb|AAB82754.1| retrofit [Oryza longistaminata]
Length = 1445
Score = 137 bits (344), Expect = 2e-30
Identities = 61/110 (55%), Positives = 83/110 (75%)
Frame = +3
Query: 6 MGLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCL 185
+GL LLS AS+P+KFW EAF A YLINR+P + +P E+L + PD+ L+ FGC
Sbjct: 626 VGLSLLSYASMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLRVFGCA 685
Query: 186 CFPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
C+PHL P+N+HKLQ +S +CVFLG++ +KG+KCLD+SSG+V ISR V+F
Sbjct: 686 CWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRVYISRDVVF 735
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 137 bits (344), Expect = 2e-30
Identities = 63/110 (57%), Positives = 83/110 (75%)
Frame = +3
Query: 6 MGLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCL 185
+GL LL+ +S+P+KFW EAF +AVYLINR P L+ +SP ERLLG PD+ L+ FGC
Sbjct: 624 VGLALLAYSSMPLKFWGEAFLSAVYLINRTPSRVLHDVSPLERLLGHKPDYNALRVFGCA 683
Query: 186 CFPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
C+P+L P+N HKLQ +S C FLGY+ +KG+KCLD S+G+V ISR V+F
Sbjct: 684 CWPNLRPYNKHKLQFRSTTCTFLGYSTLHKGFKCLDPSTGRVYISRDVVF 733
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 136 bits (343), Expect = 3e-30
Identities = 60/110 (54%), Positives = 82/110 (74%)
Frame = +3
Query: 6 MGLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCL 185
+GL LL+ +S+P+KFW EAF AVYLINR P L +++P E L + PD+ L+ FGC
Sbjct: 626 VGLTLLAYSSMPLKFWDEAFQAAVYLINRTPTKLLQFLTPLEHLFNQTPDYSSLRVFGCA 685
Query: 186 CFPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
C+PHL P+N+HKLQ +S +C FLGY+ +KG+KCLD S+G+V ISR V+F
Sbjct: 686 CWPHLRPYNTHKLQFRSKQCTFLGYSTLHKGFKCLDPSTGRVYISRDVIF 735
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 135 bits (339), Expect = 7e-30
Identities = 61/110 (55%), Positives = 83/110 (75%)
Frame = +3
Query: 6 MGLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCL 185
+GL LLS AS+P+KFW EAF A YLINR+P + +P E+L + PD+ L+ FGC
Sbjct: 626 VGLSLLSYASMPLKFWDEAFVAATYLINRVPSKTIQNSTPLEKLFNQKPDYLSLRVFGCA 685
Query: 186 CFPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
C+PHL P+N+HKLQ +S +CVFLG++ +KG+KCLD+SSG+V ISR V+F
Sbjct: 686 CWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRVYISRDVVF 735
>emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]
Length = 1449
Score = 135 bits (339), Expect = 7e-30
Identities = 57/109 (52%), Positives = 85/109 (77%)
Frame = +3
Query: 9 GLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCLC 188
GL LL+ ASLP KFW+ AF TA++LINRLP LNY SP++ L G++P++ K FGCLC
Sbjct: 690 GLALLATASLPFKFWLYAFHTAIFLINRLPTKVLNYQSPFQILFGKSPNYHIFKIFGCLC 749
Query: 189 FPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
+P++ P+N +KL +S++CVFLGY+ ++KGY CL+ +G++ ++RHV+F
Sbjct: 750 YPYIRPYNKNKLSYRSSQCVFLGYSSNHKGYMCLNPLTGRLYVTRHVVF 798
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 134 bits (338), Expect = 1e-29
Identities = 59/110 (53%), Positives = 85/110 (77%)
Frame = +3
Query: 6 MGLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCL 185
+GL LLS AS+P+KFW EAF A YLINR+P ++ ISP E+L + PD+ L+ FGC
Sbjct: 620 IGLSLLSHASMPLKFWDEAFQVATYLINRVPSRVIHNISPLEKLFKQKPDYSSLRIFGCA 679
Query: 186 CFPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
C+P+L P+N+HKLQ +S +CVFLG++ +KG+KCL++S+G++ ISR V+F
Sbjct: 680 CWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKCLEVSTGRIYISRDVVF 729
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 134 bits (338), Expect = 1e-29
Identities = 59/110 (53%), Positives = 85/110 (77%)
Frame = +3
Query: 6 MGLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCL 185
+GL LLS AS+P+KFW EAF A YLINR+P ++ ISP E+L + PD+ L+ FGC
Sbjct: 653 IGLSLLSHASMPLKFWDEAFQAATYLINRVPSRVIHNISPLEKLFKQKPDYSSLRIFGCA 712
Query: 186 CFPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
C+P+L P+N+HKLQ +S +CVFLG++ +KG+KCL++S+G++ ISR V+F
Sbjct: 713 CWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKCLEVSTGRIYISRDVVF 762
>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
Length = 1262
Score = 133 bits (335), Expect = 2e-29
Identities = 63/110 (57%), Positives = 80/110 (72%)
Frame = +3
Query: 6 MGLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCL 185
+GL LL+QASLP+K+W +AFSTAV+LINRLP L PYE L P++ LK FGCL
Sbjct: 487 LGLTLLAQASLPLKYWPDAFSTAVFLINRLPTEVLKQKCPYEFLFNSKPNYSQLKVFGCL 546
Query: 186 CFPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
CFPHL P+N HKL +S+ C FLGY+ +KGYKCL+ G++ ISR V+F
Sbjct: 547 CFPHLRPYNKHKLDFRSSPCTFLGYSSKHKGYKCLN-QQGRMFISRSVVF 595
>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
Length = 1271
Score = 133 bits (335), Expect = 2e-29
Identities = 56/109 (51%), Positives = 84/109 (77%)
Frame = +3
Query: 9 GLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCLC 188
GL LL+ ASLP KFW+ AF T ++LINRLP LNY SP++ L G++P++ K FGCLC
Sbjct: 499 GLALLATASLPFKFWLYAFHTTIFLINRLPTKVLNYQSPFQILFGKSPNYHIFKIFGCLC 558
Query: 189 FPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
+P++ P+N +KL +S++CVFLGY+ ++KGY CL+ +G++ ++RHV+F
Sbjct: 559 YPYIRPYNKNKLSYRSSQCVFLGYSSNHKGYMCLNPLTGRLYVTRHVVF 607
>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
Group] gi|108710062|gb|ABF97857.1| retrotransposon
protein, putative, Ty1-copia subclass, expressed [Oryza
sativa Japonica Group]
Length = 1021
Score = 133 bits (335), Expect = 2e-29
Identities = 60/110 (54%), Positives = 84/110 (76%)
Frame = +3
Query: 6 MGLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCL 185
+GL LL+ AS+P+KFW EAF TA YLINR P + Y +P ERLL + P++ L+ FGC
Sbjct: 541 VGLSLLAHASMPLKFWDEAFLTATYLINRTPSKVIQYSTPLERLLNQKPNYSSLRTFGCA 600
Query: 186 CFPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
C+P+L P+N+ KLQ +S +CVFLGY+ +KG+KCLD+++G+V ISR V+F
Sbjct: 601 CWPNLRPYNNRKLQFRSKQCVFLGYSNIHKGFKCLDVATGRVYISRDVVF 650
>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
Length = 1365
Score = 133 bits (334), Expect = 3e-29
Identities = 61/109 (55%), Positives = 78/109 (71%)
Frame = +3
Query: 9 GLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCLC 188
GL LL+ A LP+KFW AF TA +LINR+P L SPY L R PD+ FL+ FGCLC
Sbjct: 604 GLALLAHAGLPLKFWSYAFQTATFLINRMPSKVLQNASPYFALFKRNPDYKFLRVFGCLC 663
Query: 189 FPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
+P + P+N+HKLQ +S KCVFLGY+ +KGY CLD +G+V +S HV+F
Sbjct: 664 YPFIRPYNNHKLQYRSLKCVFLGYSLHHKGYLCLDNLTGRVYVSPHVVF 712
>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1256
Score = 133 bits (334), Expect = 3e-29
Identities = 59/110 (53%), Positives = 81/110 (73%)
Frame = +3
Query: 6 MGLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCL 185
+GL LL+ ASLP+KFW EA+ + VYLINR+P L Y SP E L + PD+ L+ FGC
Sbjct: 455 VGLSLLAHASLPLKFWDEAYQSGVYLINRMPTKVLGYSSPLECLFKQTPDYQALRTFGCA 514
Query: 186 CFPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
C+P L P+NSHK+ +S +C FLGY+P +KG++CLD S+G++ ISR V+F
Sbjct: 515 CWPDLRPYNSHKMHFRSKRCTFLGYSPLHKGFRCLDSSTGRIYISRDVVF 564
>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
Length = 1402
Score = 132 bits (333), Expect = 4e-29
Identities = 61/109 (55%), Positives = 78/109 (71%)
Frame = +3
Query: 9 GLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCLC 188
GL LL+ A LP+KFW AF TA +LINR+P L SPY L R PD+ FL+ FGCLC
Sbjct: 654 GLALLAHAGLPLKFWSYAFQTATFLINRMPSKVLXNASPYFALFKRNPDYKFLRVFGCLC 713
Query: 189 FPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
+P + P+N+HKLQ +S KCVFLGY+ +KGY CLD +G+V +S HV+F
Sbjct: 714 YPFIRPYNNHKLQYRSLKCVFLGYSLHHKGYLCLDNLTGRVYVSPHVVF 762
>gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1016
Score = 132 bits (333), Expect = 4e-29
Identities = 60/110 (54%), Positives = 83/110 (75%)
Frame = +3
Query: 6 MGLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCL 185
+GL LL+ AS+P+KFW EAF A YLINRLP + Y +P ERLL + P++ L+ FGC
Sbjct: 237 VGLALLAHASVPLKFWDEAFLAATYLINRLPSKVIQYSAPLERLLDQKPNYSALRTFGCA 296
Query: 186 CFPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
C+P+L P+N KL+ +S +CVFLGY+ +KG+KCLD+S+G+V ISR V+F
Sbjct: 297 CWPNLRPYNKRKLEFRSKQCVFLGYSNIHKGFKCLDVSTGRVYISRDVVF 346
>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1431
Score = 132 bits (332), Expect = 5e-29
Identities = 59/110 (53%), Positives = 83/110 (75%)
Frame = +3
Query: 6 MGLCLLSQASLPIKFWIEAFSTAVYLINRLPMAQLNYISPYERLLGRAPDHGFLKAFGCL 185
+GL LL+ AS+P+KFW EAF A YLINRLP + + +P ERL + PD+ L+ FGC
Sbjct: 613 VGLSLLAHASMPLKFWDEAFLAATYLINRLPSKVIKFDTPLERLFKQTPDYKSLRTFGCA 672
Query: 186 CFPHLVPFNSHKLQPKSAKCVFLGYAPSYKGYKCLDLSSGKVIISRHVLF 335
C+P+L P+N+HKLQ +S +CVFLG++ +KG+KCLD+S+G+V +SR V F
Sbjct: 673 CWPNLRPYNTHKLQFRSKQCVFLGFSNIHKGFKCLDVSTGRVYVSRDVTF 722