BLASTX nr result
ID: Rauwolfia21_contig00044654
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00044654
(287 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006582583.1| PREDICTED: uncharacterized protein LOC102668... 102 7e-20
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc... 69 6e-10
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 69 8e-10
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 67 2e-09
ref|NP_001174752.1| Os06g0316600 [Oryza sativa Japonica Group] g... 67 3e-09
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 66 5e-09
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 65 7e-09
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 65 7e-09
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 65 7e-09
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 65 7e-09
gb|EOY18934.1| Uncharacterized protein TCM_043452 [Theobroma cacao] 63 3e-08
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 63 5e-08
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote... 62 1e-07
emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera] 62 1e-07
gb|EOY01950.1| Uncharacterized protein TCM_011728 [Theobroma cacao] 61 2e-07
gb|AGW47867.1| polyprotein [Phaseolus vulgaris] 60 2e-07
gb|EOY05822.1| Uncharacterized protein TCM_020722 [Theobroma cacao] 60 4e-07
gb|ABA99467.1| retrotransposon protein, putative, Ty1-copia subc... 60 4e-07
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera] 60 4e-07
gb|ABA97036.1| retrotransposon protein, putative, Ty1-copia subc... 59 5e-07
>ref|XP_006582583.1| PREDICTED: uncharacterized protein LOC102668383 [Glycine max]
Length = 182
Score = 102 bits (253), Expect = 7e-20
Identities = 50/98 (51%), Positives = 64/98 (65%), Gaps = 9/98 (9%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
+DSA S HIC+D+ MFDNL + E+GH +G G KM+V+GIG +R+KLHDG QTF NVR
Sbjct: 68 MDSAVSKHICRDREMFDNLKTDGEFGHFKLGNGGKMKVEGIGSMRMKLHDGAIQTFSNVR 127
Query: 182 YVPEACVNLISLGELT---------SHDCRYVGTGKWC 268
+VP A VN+IS+GE+ S D R WC
Sbjct: 128 FVPSAVVNMISMGEMNHKGTSMLVQSGDARCKMGDTWC 165
>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1131
Score = 68.9 bits (167), Expect = 6e-10
Identities = 36/95 (37%), Positives = 53/95 (55%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LD+A S HIC ++ F + + +G ++ GIG V++K HDGMT+T +VR
Sbjct: 244 LDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPHEIVGIGSVQIKTHDGMTRTLKDVR 303
Query: 182 YVPEACVNLISLGELTSHDCRYVGTGKWCKVFRGA 286
Y+P NLISL L + +Y G G KV +G+
Sbjct: 304 YIPGMARNLISLSTLDAEGYKYSGLGGVVKVSKGS 338
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 68.6 bits (166), Expect = 8e-10
Identities = 35/95 (36%), Positives = 54/95 (56%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LD+A S HIC ++ F + + +G ++ GIG V++K HDGMT+T +VR
Sbjct: 294 LDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVR 353
Query: 182 YVPEACVNLISLGELTSHDCRYVGTGKWCKVFRGA 286
++P NLISL L + +Y G+G KV +G+
Sbjct: 354 HIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGS 388
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 67.4 bits (163), Expect = 2e-09
Identities = 34/95 (35%), Positives = 53/95 (55%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LD+ S HIC ++ F + + +G ++ GIG V++K HDGMT+T +VR
Sbjct: 189 LDTTCSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVR 248
Query: 182 YVPEACVNLISLGELTSHDCRYVGTGKWCKVFRGA 286
++P NLISL L + +Y G+G KV +G+
Sbjct: 249 HIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGS 283
>ref|NP_001174752.1| Os06g0316600 [Oryza sativa Japonica Group]
gi|255676990|dbj|BAH93480.1| Os06g0316600 [Oryza sativa
Japonica Group]
Length = 759
Score = 66.6 bits (161), Expect = 3e-09
Identities = 35/95 (36%), Positives = 52/95 (54%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LD+A S HIC ++ F + + +G + GIG V++K HDGMT+T + R
Sbjct: 223 LDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPRGIMGIGSVQIKTHDGMTRTLKDAR 282
Query: 182 YVPEACVNLISLGELTSHDCRYVGTGKWCKVFRGA 286
++P NLISL L S +Y G+G KV +G+
Sbjct: 283 HIPGMARNLISLSTLDSEGYKYSGSGGVVKVSKGS 317
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 65.9 bits (159), Expect = 5e-09
Identities = 34/95 (35%), Positives = 53/95 (55%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LD+A S HIC ++ F + + +G ++ GIG V++K HDGMT+T +VR
Sbjct: 294 LDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVR 353
Query: 182 YVPEACVNLISLGELTSHDCRYVGTGKWCKVFRGA 286
++P NLISL L + +Y +G KV +G+
Sbjct: 354 HIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGS 388
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 65.5 bits (158), Expect = 7e-09
Identities = 36/95 (37%), Positives = 51/95 (53%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LDSA S HIC + F + + + +G + GIG V++K DGMT+T NVR
Sbjct: 292 LDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVR 351
Query: 182 YVPEACVNLISLGELTSHDCRYVGTGKWCKVFRGA 286
Y+P NLISL L + +Y G+ KV +G+
Sbjct: 352 YIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGS 386
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 65.5 bits (158), Expect = 7e-09
Identities = 36/95 (37%), Positives = 51/95 (53%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LDSA S HIC + F + + + +G + GIG V++K DGMT+T NVR
Sbjct: 292 LDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVR 351
Query: 182 YVPEACVNLISLGELTSHDCRYVGTGKWCKVFRGA 286
Y+P NLISL L + +Y G+ KV +G+
Sbjct: 352 YIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGS 386
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 65.5 bits (158), Expect = 7e-09
Identities = 36/95 (37%), Positives = 51/95 (53%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LDSA S HIC + F + + + +G + GIG V++K DGMT+T NVR
Sbjct: 292 LDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVR 351
Query: 182 YVPEACVNLISLGELTSHDCRYVGTGKWCKVFRGA 286
Y+P NLISL L + +Y G+ KV +G+
Sbjct: 352 YIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGS 386
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 65.5 bits (158), Expect = 7e-09
Identities = 36/95 (37%), Positives = 51/95 (53%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LDSA S HIC + F + + + +G + GIG V++K DGMT+T NVR
Sbjct: 294 LDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVR 353
Query: 182 YVPEACVNLISLGELTSHDCRYVGTGKWCKVFRGA 286
Y+P NLISL L + +Y G+ KV +G+
Sbjct: 354 YIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGS 388
>gb|EOY18934.1| Uncharacterized protein TCM_043452 [Theobroma cacao]
Length = 166
Score = 63.2 bits (152), Expect = 3e-08
Identities = 33/77 (42%), Positives = 49/77 (63%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LDSA++ HIC + FD LLQ G++ +G ++V GIG+V++K+ DG+ ++ V
Sbjct: 9 LDSASATHICYQKDCFD-LLQEVVVGNLTLGNKSIVKVMGIGVVKIKMFDGVVRSLGGVA 67
Query: 182 YVPEACVNLISLGELTS 232
YVP+ NLISL L S
Sbjct: 68 YVPKMRKNLISLSLLDS 84
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 62.8 bits (151), Expect = 5e-08
Identities = 33/95 (34%), Positives = 53/95 (55%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LD+A S HI ++ F + + +G ++ GIG V++K HDG+T+T +VR
Sbjct: 294 LDTACSFHIYINRDWFSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKTHDGITRTLKDVR 353
Query: 182 YVPEACVNLISLGELTSHDCRYVGTGKWCKVFRGA 286
++P NLISL L + +Y G+G KV +G+
Sbjct: 354 HIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGS 388
>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
Group] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa Japonica Group]
gi|31431214|gb|AAP53029.1| retrotransposon protein,
putative, Ty1-copia subclass, expressed [Oryza sativa
Japonica Group]
Length = 1229
Score = 61.6 bits (148), Expect = 1e-07
Identities = 33/95 (34%), Positives = 52/95 (54%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LD+A IC ++ F + + +G ++ GIG V++K HDGMT+T +VR
Sbjct: 291 LDTACLFLICINRDWFSSHKSVQNGDVVRMGDNNPREIMGIGSVQIKTHDGMTRTLKDVR 350
Query: 182 YVPEACVNLISLGELTSHDCRYVGTGKWCKVFRGA 286
++P NLISL L + +Y G+G KV +G+
Sbjct: 351 HIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGS 385
>emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]
Length = 894
Score = 61.6 bits (148), Expect = 1e-07
Identities = 31/95 (32%), Positives = 53/95 (55%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LDS S H+C +A F++ + GH+ +G + ++ G G V++K +DG+ + ++R
Sbjct: 284 LDSGCSFHMCPIKAWFEDF-KEANGGHVLLGNNKHCKILGTGTVKIKHYDGIERVLEDIR 342
Query: 182 YVPEACVNLISLGELTSHDCRYVGTGKWCKVFRGA 286
Y+PE +NLISLG L + +V RG+
Sbjct: 343 YIPELKMNLISLGMLDKLGYTFKSEPNSLRVARGS 377
>gb|EOY01950.1| Uncharacterized protein TCM_011728 [Theobroma cacao]
Length = 176
Score = 60.8 bits (146), Expect = 2e-07
Identities = 36/94 (38%), Positives = 53/94 (56%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LDSA++ HIC + FD LLQ G++ +G ++V GI +V++K+ DG+ ++ V
Sbjct: 9 LDSASATHICYQKDCFD-LLQEGVAGNLTLGNKSIVKVMGIRVVKIKMFDGVVRSLGGVA 67
Query: 182 YVPEACVNLISLGELTSHDCRYVGTGKWCKVFRG 283
YVP+ NLISL L S Y KV +G
Sbjct: 68 YVPKMRKNLISLSLLDSKGFGYSACDGVVKVTQG 101
>gb|AGW47867.1| polyprotein [Phaseolus vulgaris]
Length = 1471
Score = 60.5 bits (145), Expect = 2e-07
Identities = 30/76 (39%), Positives = 47/76 (61%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LDS AS H+C + +F ++ Q E GH++ G K++VKG G V DG+ + +V
Sbjct: 358 LDSGASNHMCGHEYLFKDM-QKIEDGHVSFGDASKVEVKGRGTVCYLQKDGLIGSLQDVY 416
Query: 182 YVPEACVNLISLGELT 229
YVP+ N++S+G+LT
Sbjct: 417 YVPDLKTNILSMGQLT 432
>gb|EOY05822.1| Uncharacterized protein TCM_020722 [Theobroma cacao]
Length = 218
Score = 59.7 bits (143), Expect = 4e-07
Identities = 35/94 (37%), Positives = 52/94 (55%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LDSA++ HIC + FD LLQ G++ +G ++V G+ +V++K+ DG+ + V
Sbjct: 51 LDSASATHICYQKDCFD-LLQEGMAGNLTLGNKSIVKVMGLAVVKIKMFDGVVLSLGGVA 109
Query: 182 YVPEACVNLISLGELTSHDCRYVGTGKWCKVFRG 283
YVP+ NLISL L S Y KV +G
Sbjct: 110 YVPKMRKNLISLSLLDSKGYGYSACDGVVKVTQG 143
>gb|ABA99467.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1136
Score = 59.7 bits (143), Expect = 4e-07
Identities = 31/85 (36%), Positives = 46/85 (54%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LD+A S HIC ++ F + + +G + GIG V++K HDGMT+T VR
Sbjct: 210 LDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPRVIMGIGSVQIKTHDGMTRTLKYVR 269
Query: 182 YVPEACVNLISLGELTSHDCRYVGT 256
++P NLISL L + +Y G+
Sbjct: 270 HIPGMARNLISLSTLDAEGYKYSGS 294
>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
Length = 947
Score = 59.7 bits (143), Expect = 4e-07
Identities = 33/95 (34%), Positives = 51/95 (53%)
Frame = +2
Query: 2 LDSAASVHICKDQAMFDNLLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNVR 181
LDS S H+C +A F++ + GH+ +G + ++ G IVR+K +DG+ + VR
Sbjct: 327 LDSGCSFHMCPIKAWFEDF-KEANGGHVLLGNNKHCKILGTSIVRIKHYDGIERVLEVVR 385
Query: 182 YVPEACVNLISLGELTSHDCRYVGTGKWCKVFRGA 286
Y+PE NLISLG L + +V RG+
Sbjct: 386 YIPELKRNLISLGMLDKLGYTFKSKPNSLRVARGS 420
>gb|ABA97036.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 966
Score = 59.3 bits (142), Expect = 5e-07
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Frame = +2
Query: 5 DSAASVHICKDQAMFDN--LLQNTEYGHINIGGGQKMQVKGIGIVRLKLHDGMTQTFHNV 178
D+A HIC ++ F + +QN + + +G ++ GIG V++K HDGMT+T ++
Sbjct: 226 DTACLFHICINRDWFSSYKFVQNGDV--VRMGDDNPREIVGIGSVQIKTHDGMTRTLKDM 283
Query: 179 RYVPEACVNLISLGELTSHDCRYVGTGKWCKVFRGA 286
R++P NLISL + +Y +G KV +G+
Sbjct: 284 RHIPRMVRNLISLSTFDAEGYKYSSSGGVVKVSKGS 319