BLASTX nr result
ID: Rauwolfia21_contig00042886
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00042886
(348 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 82 2e-24
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 77 1e-23
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 75 1e-23
emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694... 76 7e-22
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 74 9e-22
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 74 9e-22
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 74 6e-21
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268... 70 6e-21
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 69 1e-20
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 69 1e-20
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 65 2e-20
gb|ABD96948.1| hypothetical protein [Cleome spinosa] 70 8e-20
gb|ACA61608.1| hypothetical protein AP1_E07.1 [Arabidopsis lyrat... 70 1e-19
ref|XP_004240780.1| PREDICTED: uncharacterized protein LOC101257... 64 2e-19
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 65 1e-18
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 64 3e-18
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 66 4e-18
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 62 4e-18
gb|AAD22330.1| putative non-LTR retroelement reverse transcripta... 63 4e-18
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 66 7e-18
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 81.6 bits (200), Expect(2) = 2e-24
Identities = 36/69 (52%), Positives = 53/69 (76%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
F++ LK RF+ WI + +T+T+FSI+++G L G+FKG KGLRQG+PLSPSLFV+
Sbjct: 604 FIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIA 663
Query: 321 LEYLSRIIK 347
+E LSR+++
Sbjct: 664 MEILSRLLE 672
Score = 56.6 bits (135), Expect(2) = 2e-24
Identities = 26/45 (57%), Positives = 35/45 (77%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSV 135
SAFV+GRLL EN+ L E+++ +G+ IS R +KVDLRKA+DSV
Sbjct: 556 SAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSV 600
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 77.4 bits (189), Expect(2) = 1e-23
Identities = 34/68 (50%), Positives = 47/68 (69%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
F+++ LK G RF+ WI + ++T TFS+ +NG GFFK +GLRQGNPLSP LFVL
Sbjct: 558 FIISALKAIGIPDRFVYWITQCISTPTFSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLA 617
Query: 321 LEYLSRII 344
+E S ++
Sbjct: 618 MEVFSSLL 625
Score = 57.8 bits (138), Expect(2) = 1e-23
Identities = 25/45 (55%), Positives = 34/45 (75%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSV 135
SAF+ GR LAEN+ L E+++ Y R+ I PR +KVDLRKA+DS+
Sbjct: 510 SAFLPGRFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSI 554
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 75.5 bits (184), Expect(2) = 1e-23
Identities = 36/69 (52%), Positives = 50/69 (72%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
FL +L +GF SRF+GWIME V+T ++S+ +NG F+ KGLRQG+P+SP LF L
Sbjct: 596 FLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALC 655
Query: 321 LEYLSRIIK 347
+EYLSR ++
Sbjct: 656 MEYLSRCLE 664
Score = 59.7 bits (143), Expect(2) = 1e-23
Identities = 28/53 (52%), Positives = 39/53 (73%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSVLISYWQSL 159
S F+ GR +A+NI L E+I+ Y RK +SPR +KVD+RKAYDSV S+ ++L
Sbjct: 548 SGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETL 600
>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
putative protein [Arabidopsis thaliana]
Length = 1141
Score = 75.9 bits (185), Expect(2) = 7e-22
Identities = 34/68 (50%), Positives = 49/68 (72%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
F++A L G ++FI WI + ++T TF++S+NG GFFK KGLRQG+PLSP LFVL
Sbjct: 583 FIIAALLALGVPTKFINWIHQCISTPTFTVSVNGCCGGFFKSAKGLRQGDPLSPYLFVLA 642
Query: 321 LEYLSRII 344
+E S+++
Sbjct: 643 MEVFSKLL 650
Score = 53.5 bits (127), Expect(2) = 7e-22
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSV 135
SAF+ GRLLAEN+ L E++ Y + IS R +KVDLRKA+DSV
Sbjct: 535 SAFLPGRLLAENVLLATEMVHGYNWRNISLRGMLKVDLRKAFDSV 579
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 73.6 bits (179), Expect(2) = 9e-22
Identities = 33/68 (48%), Positives = 47/68 (69%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
F+ A L+ R+I WI + +TT +F+IS+NG GFF+ KGLRQG+PLSP LFVL
Sbjct: 465 FVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLA 524
Query: 321 LEYLSRII 344
+E S+++
Sbjct: 525 MEVFSKLL 532
Score = 55.5 bits (132), Expect(2) = 9e-22
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSV 135
SAF+ GR LAEN+ L E++ Y R ISPR +KVDL+KA+DSV
Sbjct: 417 SAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSV 461
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 73.6 bits (179), Expect(2) = 9e-22
Identities = 33/68 (48%), Positives = 47/68 (69%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
F+ A L+ R+I WI + +TT +F+IS+NG GFF+ KGLRQG+PLSP LFVL
Sbjct: 465 FVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLA 524
Query: 321 LEYLSRII 344
+E S+++
Sbjct: 525 MEVFSKLL 532
Score = 55.5 bits (132), Expect(2) = 9e-22
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSV 135
SAF+ GR LAEN+ L E++ Y R ISPR +KVDL+KA+DSV
Sbjct: 417 SAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSV 461
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 73.9 bits (180), Expect(2) = 6e-21
Identities = 34/68 (50%), Positives = 47/68 (69%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
F++A L+ +FI WI + ++T TF++SING GFFK KGLRQG+PLSP LFVL
Sbjct: 605 FVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLA 664
Query: 321 LEYLSRII 344
+E S ++
Sbjct: 665 MEAFSNLL 672
Score = 52.4 bits (124), Expect(2) = 6e-21
Identities = 24/45 (53%), Positives = 32/45 (71%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSV 135
SAF+ GR LAEN+ L +++ Y ISPR +KVDL+KA+DSV
Sbjct: 557 SAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSV 601
>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
lycopersicum]
Length = 717
Score = 70.1 bits (170), Expect(2) = 6e-21
Identities = 33/69 (47%), Positives = 46/69 (66%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
FL V++G GF F W+M+ V T ++I +NGQ F KGLRQG+P+SP LF +
Sbjct: 404 FLEQVMEGLGFPDLFTKWVMKCVKTVNYTIVVNGQNTQRFDAAKGLRQGDPMSPFLFAIA 463
Query: 321 LEYLSRIIK 347
+EYLSR++K
Sbjct: 464 MEYLSRLLK 472
Score = 56.2 bits (134), Expect(2) = 6e-21
Identities = 23/45 (51%), Positives = 33/45 (73%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSV 135
+ F+ GR + +NI L E++K+Y RK +SPR +K+DL KAYDSV
Sbjct: 356 AGFIPGRKIGDNIILAHELVKAYTRKNVSPRCMLKIDLHKAYDSV 400
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 68.9 bits (167), Expect(2) = 1e-20
Identities = 30/69 (43%), Positives = 45/69 (65%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
F+++ + +F+ WI + ++T FS+ +NG GFFK KGLRQG+PLSP LFVL
Sbjct: 606 FIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLA 665
Query: 321 LEYLSRIIK 347
+E S ++K
Sbjct: 666 MEVFSSLLK 674
Score = 56.2 bits (134), Expect(2) = 1e-20
Identities = 27/45 (60%), Positives = 33/45 (73%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSV 135
SAF+ GRLL+EN+ L EI+ Y K IS R +KVDLRKA+DSV
Sbjct: 558 SAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSV 602
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 68.9 bits (167), Expect(2) = 1e-20
Identities = 30/69 (43%), Positives = 45/69 (65%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
F+++ + +F+ WI + ++T FS+ +NG GFFK KGLRQG+PLSP LFVL
Sbjct: 606 FIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLA 665
Query: 321 LEYLSRIIK 347
+E S ++K
Sbjct: 666 MEVFSSLLK 674
Score = 56.2 bits (134), Expect(2) = 1e-20
Identities = 27/45 (60%), Positives = 33/45 (73%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSV 135
SAF+ GRLL+EN+ L EI+ Y K IS R +KVDLRKA+DSV
Sbjct: 558 SAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSV 602
>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 402
Score = 64.7 bits (156), Expect(2) = 2e-20
Identities = 29/65 (44%), Positives = 45/65 (69%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
F+ ++ GFS +F+ W+M +TT +++ +ING L F KGLRQG+P+SP LFV+
Sbjct: 279 FIKHLMLELGFSYKFVNWVMGCLTTASYTFNINGDLTRPFAAKKGLRQGDPISPYLFVIC 338
Query: 321 LEYLS 335
+EYL+
Sbjct: 339 MEYLN 343
Score = 60.1 bits (144), Expect(2) = 2e-20
Identities = 27/45 (60%), Positives = 37/45 (82%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSV 135
SAFV+GR++ +NI L E++KSY RK ISPR +K+DL+KAY+SV
Sbjct: 231 SAFVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYNSV 275
>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
Length = 539
Score = 70.5 bits (171), Expect(2) = 8e-20
Identities = 30/68 (44%), Positives = 47/68 (69%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
F+ +++ F+ W+ + T FS+SING+L G+FKG +GLRQG+PLSP LF++
Sbjct: 58 FITKIMQALNLPRTFVTWVKVCMETPKFSVSINGELAGYFKGRRGLRQGDPLSPYLFIMS 117
Query: 321 LEYLSRII 344
+E LSR++
Sbjct: 118 MEVLSRML 125
Score = 52.0 bits (123), Expect(2) = 8e-20
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +1
Query: 4 AFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSV 135
AF+EGRL+ EN+ L E++ Y R S R +K+DLRKA+D+V
Sbjct: 11 AFLEGRLMVENVLLATELVHEYNRPNTSKRAMLKIDLRKAFDTV 54
>gb|ACA61608.1| hypothetical protein AP1_E07.1 [Arabidopsis lyrata subsp. petraea]
Length = 532
Score = 70.1 bits (170), Expect(2) = 1e-19
Identities = 31/69 (44%), Positives = 47/69 (68%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
F+++ L+ RFI WI + ++T+ FS+S+NG FFK KGLRQG+PLSP FVL
Sbjct: 150 FIVSALRALAIPERFINWINQCISTSFFSVSVNGSNCDFFKSTKGLRQGDPLSPYFFVLA 209
Query: 321 LEYLSRIIK 347
+E S++++
Sbjct: 210 IEVFSKLLQ 218
Score = 51.6 bits (122), Expect(2) = 1e-19
Identities = 24/45 (53%), Positives = 32/45 (71%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSV 135
SAF+ GRLL EN+ L E++ Y + IS R +K+DLRKA+DSV
Sbjct: 102 SAFLPGRLLPENVLLAMEMVHGYNWRNISLRGMLKIDLRKAFDSV 146
>ref|XP_004240780.1| PREDICTED: uncharacterized protein LOC101257671 [Solanum
lycopersicum]
Length = 226
Score = 63.9 bits (154), Expect(2) = 2e-19
Identities = 32/69 (46%), Positives = 43/69 (62%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
+L V+ G GF F+ WIM+ V T +SI + GQ F KGLRQG +SP LF +
Sbjct: 152 YLEQVMCGLGFPEMFVNWIMKCVNTVNYSIVVIGQTLQSFDVTKGLRQGYSMSPFLFAIA 211
Query: 321 LEYLSRIIK 347
+EYLSR++K
Sbjct: 212 MEYLSRLLK 220
Score = 57.0 bits (136), Expect(2) = 2e-19
Identities = 25/51 (49%), Positives = 37/51 (72%)
Frame = +1
Query: 7 FVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSVLISYWQSL 159
F+ GR +A+NI L E++K+Y RK ISPR +K+DL+K+YDSV Y + +
Sbjct: 106 FIPGRKIADNIVLAHELVKAYTRKHISPRSMLKIDLQKSYDSVEWDYLEQV 156
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 65.1 bits (157), Expect(2) = 1e-18
Identities = 32/68 (47%), Positives = 42/68 (61%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
FLL L+ F F WI ++T TFS+ +NG+L GFF +GLRQG LSP LFV+
Sbjct: 184 FLLNTLEALNFPENFCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVIC 243
Query: 321 LEYLSRII 344
+ LS +I
Sbjct: 244 MNVLSHMI 251
Score = 53.5 bits (127), Expect(2) = 1e-18
Identities = 27/53 (50%), Positives = 35/53 (66%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSVLISYWQSL 159
SAFV RLL EN+ L E++K Y + ISPR +K+D+ KA+DSV WQ L
Sbjct: 136 SAFVRERLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSV---QWQFL 185
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 63.9 bits (154), Expect(2) = 3e-18
Identities = 32/68 (47%), Positives = 42/68 (61%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
FLL L+ F F WI ++T TFS+ +NG+L GFF +GLRQG LSP LFV+
Sbjct: 908 FLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVIC 967
Query: 321 LEYLSRII 344
+ LS +I
Sbjct: 968 MNVLSHMI 975
Score = 53.1 bits (126), Expect(2) = 3e-18
Identities = 25/53 (47%), Positives = 37/53 (69%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSVLISYWQSL 159
SAFV+ RLL EN+ L E++K Y ++ ++PR +K+D+ KA+DSV WQ L
Sbjct: 860 SAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSV---QWQFL 909
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1223
Score = 66.2 bits (160), Expect(2) = 4e-18
Identities = 31/68 (45%), Positives = 46/68 (67%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
FL+ V GF FI WI +TT +FS+ +NG+L G+F+ +GLRQG LSP LFV+
Sbjct: 611 FLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVIC 670
Query: 321 LEYLSRII 344
++ LS+++
Sbjct: 671 MDVLSKML 678
Score = 50.4 bits (119), Expect(2) = 4e-18
Identities = 24/45 (53%), Positives = 32/45 (71%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSV 135
SAFV+ RLL EN+ L E++K Y + IS R IK+D+ KA+DSV
Sbjct: 563 SAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSV 607
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 62.4 bits (150), Expect(2) = 4e-18
Identities = 28/69 (40%), Positives = 45/69 (65%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
F+++ L+ +F WI+E ++T +FS+ +NG G F KGLRQG+P+SP LFVL
Sbjct: 502 FIVSALRALNVPEKFTCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLA 561
Query: 321 LEYLSRIIK 347
+E S +++
Sbjct: 562 MEVFSGLLQ 570
Score = 54.3 bits (129), Expect(2) = 4e-18
Identities = 24/45 (53%), Positives = 32/45 (71%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSV 135
SAF+ GRL EN+ L E++ Y +K I+P +KVDLRKA+DSV
Sbjct: 454 SAFMPGRLFLENVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSV 498
>gb|AAD22330.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 631
Score = 62.8 bits (151), Expect(2) = 4e-18
Identities = 31/68 (45%), Positives = 42/68 (61%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
FLL L+ F + WI ++T TFS+ +NG+L GFF +GLRQG LSP LFV+
Sbjct: 181 FLLNTLEALNFPEKIRHWIKLCISTATFSVQVNGELAGFFGNKRGLRQGCALSPYLFVIC 240
Query: 321 LEYLSRII 344
+ LS +I
Sbjct: 241 MNVLSHMI 248
Score = 53.9 bits (128), Expect(2) = 4e-18
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSVLISYWQSL 159
SAFV+ RLL EN+ L E++K Y + ISPR +K+D+ KA+DSV WQ L
Sbjct: 133 SAFVKERLLMENVLLATELVKDYHKDSISPRCAMKIDISKAFDSV---QWQFL 182
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 66.2 bits (160), Expect(2) = 7e-18
Identities = 32/68 (47%), Positives = 45/68 (66%)
Frame = +3
Query: 141 FLLAVLKGYGFSSRFIGWIMESVTTTTFSISINGQLHGFFKG*KGLRQGNPLSPSLFVLY 320
FL VL F FI WI ++T +FSI +NG+L G+F+ +GLRQG LSP LFV+
Sbjct: 332 FLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVIS 391
Query: 321 LEYLSRII 344
++ LSR++
Sbjct: 392 MDVLSRML 399
Score = 49.7 bits (117), Expect(2) = 7e-18
Identities = 23/49 (46%), Positives = 34/49 (69%)
Frame = +1
Query: 1 SAFVEGRLLAENIFLVQEIIKSYGRKKISPRFFIKVDLRKAYDSVLISY 147
SAFV+ RLL EN+ L E++K Y + IS R +K+D+ KA+DS+ S+
Sbjct: 284 SAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSF 332