BLASTX nr result
ID: Rauwolfia21_contig00038539
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00038539
(522 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 86 4e-15
gb|EMJ26460.1| hypothetical protein PRUPE_ppa001524mg [Prunus pe... 84 1e-14
emb|CBI26820.3| unnamed protein product [Vitis vinifera] 82 7e-14
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 82 7e-14
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera] 82 7e-14
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 79 5e-13
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro... 77 2e-12
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 77 2e-12
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 77 3e-12
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 75 7e-12
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu... 75 7e-12
gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum de... 75 7e-12
gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum de... 75 7e-12
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola... 75 7e-12
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 75 1e-11
gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solan... 75 1e-11
gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum de... 73 5e-11
gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tu... 73 5e-11
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola... 73 5e-11
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 71 1e-10
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 86.3 bits (212), Expect = 4e-15
Identities = 36/55 (65%), Positives = 45/55 (81%)
Frame = +2
Query: 2 TYWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSLEWTFNYGLGL 166
+YWGCYNEG+NRDHY+SFPWCVYDKL+ IKR K++ R+ Q+SSLE F+ L L
Sbjct: 1078 SYWGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLHL 1132
>gb|EMJ26460.1| hypothetical protein PRUPE_ppa001524mg [Prunus persica]
Length = 808
Score = 84.3 bits (207), Expect = 1e-14
Identities = 37/54 (68%), Positives = 44/54 (81%)
Frame = +2
Query: 5 YWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSLEWTFNYGLGL 166
Y+GCYNEGLNRDH+ISFPWCVYDKL+HIK+EK++ R + LSSLE F L L
Sbjct: 754 YFGCYNEGLNRDHFISFPWCVYDKLVHIKKEKASVRRARNLSSLERRFRNDLHL 807
>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
Length = 919
Score = 82.0 bits (201), Expect = 7e-14
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = +2
Query: 5 YWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSLEWTFNYGLGL 166
YWGCYNEG++RDH++SFPWCVYDKLIH KR+K +G R+ LSSLE + GL L
Sbjct: 866 YWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSG-RSLHLSSLERRLSQGLRL 918
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 82.0 bits (201), Expect = 7e-14
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = +2
Query: 5 YWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSLEWTFNYGLGL 166
YWGCYNEG++RDH++SFPWCVYDKLIH KR+K +G R+ LSSLE + GL L
Sbjct: 1068 YWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSG-RSLHLSSLERRLSQGLRL 1120
>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
Length = 654
Score = 82.0 bits (201), Expect = 7e-14
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = +2
Query: 5 YWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSLEWTFNYGLGL 166
YWGCYNEG++RDH++SFPWCVYDKLIH KR+K +G R+ LSSLE + GL L
Sbjct: 601 YWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSG-RSLHLSSLERRLSQGLRL 653
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 79.3 bits (194), Expect = 5e-13
Identities = 35/55 (63%), Positives = 41/55 (74%)
Frame = +2
Query: 2 TYWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSLEWTFNYGLGL 166
+YWG YNEG+NRDH++SFPWCVYDKLI IK+EK+ LSSLE F GL L
Sbjct: 1055 SYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109
>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao]
Length = 1109
Score = 77.4 bits (189), Expect = 2e-12
Identities = 36/55 (65%), Positives = 43/55 (78%)
Frame = +2
Query: 2 TYWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSLEWTFNYGLGL 166
+YWG YNEG+NR+H++SFPWCVYDKLI IK+ K T RN +LSSLE F GL L
Sbjct: 1055 SYWGLYNEGMNRNHFLSFPWCVYDKLILIKK-KVTSRRNSRLSSLESLFARGLRL 1108
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 77.4 bits (189), Expect = 2e-12
Identities = 34/55 (61%), Positives = 40/55 (72%)
Frame = +2
Query: 2 TYWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSLEWTFNYGLGL 166
+YWG YNEG+NRDH++SFPWCVYDKLI IK+EK+ LSSLE F G L
Sbjct: 1055 SYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHL 1109
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 76.6 bits (187), Expect = 3e-12
Identities = 35/55 (63%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Frame = +2
Query: 5 YWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTG-ERNQQLSSLEWTFNYGLGL 166
YWGCYNEG+NRDH++SFPWCVYDKLI IKR S R+ L S+E F+ GL L
Sbjct: 1078 YWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHL 1132
>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
Length = 1115
Score = 75.5 bits (184), Expect = 7e-12
Identities = 33/55 (60%), Positives = 40/55 (72%)
Frame = +2
Query: 2 TYWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSLEWTFNYGLGL 166
TYWGCYN+GL RDH+ISFPWCVYD+LI IK+EK+ LSSL ++ L L
Sbjct: 1060 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKALNRPVLNLSSLRAQLSHKLVL 1114
>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 75.5 bits (184), Expect = 7e-12
Identities = 33/55 (60%), Positives = 40/55 (72%)
Frame = +2
Query: 2 TYWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSLEWTFNYGLGL 166
TYWGCYN+GL RDH+ISFPWCVYD+LI IK+EK+ LSSL ++ L L
Sbjct: 1060 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKARNRPVLNLSSLRAQLSHKLVL 1114
>gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1139
Score = 75.5 bits (184), Expect = 7e-12
Identities = 33/55 (60%), Positives = 40/55 (72%)
Frame = +2
Query: 2 TYWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSLEWTFNYGLGL 166
TYWGCYN+GL RDH+ISFPWCVYD+LI IK+EK+ LSSL ++ L L
Sbjct: 1084 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKALNRPVLNLSSLRAQLSHKLVL 1138
>gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1180
Score = 75.5 bits (184), Expect = 7e-12
Identities = 33/55 (60%), Positives = 40/55 (72%)
Frame = +2
Query: 2 TYWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSLEWTFNYGLGL 166
TYWGCYN+GL RDH+ISFPWCVYD+LI IK+EK+ LSSL ++ L L
Sbjct: 1125 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKALNRPVLNLSSLRAQLSHKLVL 1179
>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 75.5 bits (184), Expect = 7e-12
Identities = 33/55 (60%), Positives = 40/55 (72%)
Frame = +2
Query: 2 TYWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSLEWTFNYGLGL 166
TYWGCYN+GL RDH+ISFPWCVYD+LI IK+EK+ LSSL ++ L L
Sbjct: 908 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKARNRPVLNLSSLRAQLSHKLVL 962
>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
tuberosum]
Length = 1115
Score = 74.7 bits (182), Expect = 1e-11
Identities = 31/45 (68%), Positives = 36/45 (80%)
Frame = +2
Query: 2 TYWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSL 136
TYWGCYN+GL RDH+ISFPWCVYD+LI IK+EK+ LSSL
Sbjct: 1060 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKARNRPVLNLSSL 1104
>gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
Length = 1137
Score = 74.7 bits (182), Expect = 1e-11
Identities = 31/45 (68%), Positives = 36/45 (80%)
Frame = +2
Query: 2 TYWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSL 136
TYWGCYN+GL RDH+ISFPWCVYD+LI IK+EK+ LSSL
Sbjct: 1082 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKARNRPVLNLSSL 1126
>gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1021
Score = 72.8 bits (177), Expect = 5e-11
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +2
Query: 2 TYWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSLEW 142
TYWGCYN+GL RDH+ISFPWCVYD+LI IK+EK+ RN+ + +L +
Sbjct: 966 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKA---RNRPVLNLSY 1009
>gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
Length = 1050
Score = 72.8 bits (177), Expect = 5e-11
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +2
Query: 2 TYWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSLEW 142
TYWGCYN+GL RDH+ISFPWCVYD+LI IK+EK+ RN+ + +L +
Sbjct: 995 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKA---RNRPVLNLSY 1038
>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 72.8 bits (177), Expect = 5e-11
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +2
Query: 2 TYWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSLEW 142
TYWGCYN+GL RDH+ISFPWCVYD+LI IK+EK+ RN+ + +L +
Sbjct: 908 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKA---RNRPVLNLSY 951
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 71.2 bits (173), Expect = 1e-10
Identities = 31/55 (56%), Positives = 39/55 (70%)
Frame = +2
Query: 2 TYWGCYNEGLNRDHYISFPWCVYDKLIHIKREKSTGERNQQLSSLEWTFNYGLGL 166
TYWGCYN+GL R H+ISFPWCVYD+LI IK++K+ LSSL ++ L L
Sbjct: 1059 TYWGCYNQGLKRAHFISFPWCVYDQLIQIKKDKARNRPVLNLSSLRAQLSHRLVL 1113