BLASTX nr result
ID: Rauwolfia21_contig00037803
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00037803
(828 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi... 102 1e-42
gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|3860380... 102 1e-42
emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera] 97 1e-41
emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera] 99 1e-41
emb|CAN69804.1| hypothetical protein VITISV_017631 [Vitis vinifera] 97 2e-41
emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera] 97 3e-41
emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera] 96 6e-41
emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera] 102 2e-40
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha... 102 3e-40
emb|CAN61658.1| hypothetical protein VITISV_040310 [Vitis vinifera] 97 3e-40
gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arab... 101 7e-40
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 101 8e-40
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th... 101 8e-40
emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera] 102 1e-39
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 96 3e-39
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t... 103 5e-39
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 95 6e-39
gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsi... 94 1e-38
emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera] 99 3e-38
emb|CAN74229.1| hypothetical protein VITISV_000584 [Vitis vinifera] 110 3e-37
>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1496
Score = 102 bits (253), Expect(2) = 1e-42
Identities = 53/113 (46%), Positives = 70/113 (61%)
Frame = +2
Query: 281 YSMKHITHISTAQPAASKVPVSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTI 460
YS HI ++ + EP F +A++ +W AM +EI ALE N TW +T
Sbjct: 970 YSANHIAFMAA---------ILDSNEPKHFKDAILIKEWCEAMSKEIDALEANHTWDITD 1020
Query: 461 LPTEKKTLGCKWVYWIKLKSNGTVERYKSCLVILGNTQVEGVDFKETFAPVDK 619
LP KK + KWVY +K S+GT+ER+K+ LV++GN Q EGVDFKETFAPV K
Sbjct: 1021 LPHGKKAISSKWVYKLKYNSDGTLERHKARLVVMGNHQKEGVDFKETFAPVAK 1073
Score = 99.0 bits (245), Expect(2) = 1e-42
Identities = 43/61 (70%), Positives = 48/61 (78%)
Frame = +3
Query: 645 VAVAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCW 824
VA AK+WE+HQMDVHNAFLHGD EEVYMRLPPGF P ++C LR LYGL+QA CW
Sbjct: 1083 VAAAKDWEVHQMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCW 1142
Query: 825 F 827
F
Sbjct: 1143 F 1143
>gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|38603804|gb|AAR24647.1|
At2g23330 [Arabidopsis thaliana]
gi|110742535|dbj|BAE99183.1| putative retroelement pol
polyprotein [Arabidopsis thaliana]
Length = 776
Score = 102 bits (253), Expect(2) = 1e-42
Identities = 53/113 (46%), Positives = 70/113 (61%)
Frame = +2
Query: 281 YSMKHITHISTAQPAASKVPVSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTI 460
YS HI ++ + EP F +A++ +W AM +EI ALE N TW +T
Sbjct: 250 YSANHIAFMAA---------ILDSNEPKHFKDAILIKEWCEAMSKEIDALEANHTWDITD 300
Query: 461 LPTEKKTLGCKWVYWIKLKSNGTVERYKSCLVILGNTQVEGVDFKETFAPVDK 619
LP KK + KWVY +K S+GT+ER+K+ LV++GN Q EGVDFKETFAPV K
Sbjct: 301 LPHGKKAISSKWVYKLKYNSDGTLERHKARLVVMGNHQKEGVDFKETFAPVAK 353
Score = 99.0 bits (245), Expect(2) = 1e-42
Identities = 43/61 (70%), Positives = 48/61 (78%)
Frame = +3
Query: 645 VAVAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCW 824
VA AK+WE+HQMDVHNAFLHGD EEVYMRLPPGF P ++C LR LYGL+QA CW
Sbjct: 363 VAAAKDWEVHQMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCW 422
Query: 825 F 827
F
Sbjct: 423 F 423
>emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]
Length = 1178
Score = 97.4 bits (241), Expect(3) = 1e-41
Identities = 41/61 (67%), Positives = 48/61 (78%)
Frame = +3
Query: 645 VAVAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCW 824
+A +KNWE+HQMDVHNAFLHGD EEVYM+LPPGF P+ +C LR LYGL+QA CW
Sbjct: 765 IAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFERSDPNLVCRLRKSLYGLKQAPRCW 824
Query: 825 F 827
F
Sbjct: 825 F 825
Score = 95.1 bits (235), Expect(3) = 1e-41
Identities = 48/93 (51%), Positives = 60/93 (64%)
Frame = +2
Query: 341 VSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTILPTEKKTLGCKWVYWIKLKS 520
+ S +P F EAM W +M +EI ALE+N TWTL LP K+ LG +WVY K S
Sbjct: 663 IISSNDPKSFKEAMKDVGWQKSMHEEIRALEENGTWTLEPLPKGKRALGSQWVYRTKYFS 722
Query: 521 NGTVERYKSCLVILGNTQVEGVDFKETFAPVDK 619
NG +ER KS LV+LGN Q G+D+ ETF+PV K
Sbjct: 723 NGDIERLKSRLVVLGNHQEAGIDYHETFSPVAK 755
Score = 25.8 bits (55), Expect(3) = 1e-41
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 219 PLQRSTRNRRPSTSLTDYVCYIA*SILPTSPRRNPRHP 332
P+ + R++ PS L D+V + + P+ P+HP
Sbjct: 599 PMGKGMRDKFPSVLLRDFVTHTVVAESPSPATPXPQHP 636
>emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera]
Length = 1450
Score = 99.4 bits (246), Expect(3) = 1e-41
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = +3
Query: 645 VAVAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCW 824
+A +KNWE+HQMDVHNAFLHGD EEVYM+LPPGF S P+ +C LR LYGL+QA CW
Sbjct: 1048 IAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFESSDPNLVCRLRKSLYGLKQAPRCW 1107
Query: 825 F 827
F
Sbjct: 1108 F 1108
Score = 92.0 bits (227), Expect(3) = 1e-41
Identities = 46/84 (54%), Positives = 56/84 (66%)
Frame = +2
Query: 368 FSEAMIHAKWW*AMRQEIAALEQNQTWTLTILPTEKKTLGCKWVYWIKLKSNGTVERYKS 547
F EAM W +M +EI ALE+N TWTL LP K+ LG +WVY K SNG +ER KS
Sbjct: 955 FKEAMKDVGWQKSMHEEIRALEENGTWTLEPLPKGKRALGSQWVYRTKYFSNGDIERLKS 1014
Query: 548 CLVILGNTQVEGVDFKETFAPVDK 619
LV+LGN Q G+D+ ETF+PV K
Sbjct: 1015 RLVVLGNHQEAGIDYHETFSPVAK 1038
Score = 26.6 bits (57), Expect(3) = 1e-41
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 219 PLQRSTRNRRPSTSLTDYVCYIA*SILPTSPRRNPRHP 332
P+ + R++ PS L D+V + + P+ +P+HP
Sbjct: 882 PMGKGMRDKFPSVLLRDFVTHTVVAESPSPATPSPQHP 919
>emb|CAN69804.1| hypothetical protein VITISV_017631 [Vitis vinifera]
Length = 1191
Score = 97.1 bits (240), Expect(3) = 2e-41
Identities = 41/61 (67%), Positives = 48/61 (78%)
Frame = +3
Query: 645 VAVAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCW 824
+A +KNWE+HQMDVHNAF HGD EEVYM+LPPGF S P+ +C LR LYGL+QA CW
Sbjct: 760 IAASKNWELHQMDVHNAFSHGDLEEEVYMKLPPGFESSDPNLVCRLRKSLYGLKQAPRCW 819
Query: 825 F 827
F
Sbjct: 820 F 820
Score = 94.0 bits (232), Expect(3) = 2e-41
Identities = 47/93 (50%), Positives = 59/93 (63%)
Frame = +2
Query: 341 VSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTILPTEKKTLGCKWVYWIKLKS 520
+ S +P F EAM W +M +EI ALE+N TWTL LP K+ LG +WVY K S
Sbjct: 658 IISSNDPKSFKEAMKDVSWQKSMHEEIRALEENGTWTLEXLPKGKRALGSQWVYRTKYFS 717
Query: 521 NGTVERYKSCLVILGNTQVEGVDFKETFAPVDK 619
N +ER KS LV+LGN Q G+D+ ETF+PV K
Sbjct: 718 NDDIERLKSRLVVLGNHQEAGIDYHETFSPVAK 750
Score = 26.2 bits (56), Expect(3) = 2e-41
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 219 PLQRSTRNRRPSTSLTDYVCYIA*SILPTSPRRNPRHPRS 338
P+ + R++ PS L D+V + + P+ P+HP S
Sbjct: 594 PMGKGMRDKFPSVLLRDFVTHTVVAESPSPATPFPQHPSS 633
>emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera]
Length = 1099
Score = 97.4 bits (241), Expect(3) = 3e-41
Identities = 41/61 (67%), Positives = 48/61 (78%)
Frame = +3
Query: 645 VAVAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCW 824
+A +KNWE+HQMDVHNAFLHGD EEVYM+LPPGF P+ +C LR LYGL+QA CW
Sbjct: 686 IAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFERSDPNLVCRLRKSLYGLKQAPRCW 745
Query: 825 F 827
F
Sbjct: 746 F 746
Score = 92.8 bits (229), Expect(3) = 3e-41
Identities = 47/93 (50%), Positives = 59/93 (63%)
Frame = +2
Query: 341 VSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTILPTEKKTLGCKWVYWIKLKS 520
+ S +P F EAM W +M +EI ALE+N TW L LP K+ LG +WVY K S
Sbjct: 584 IISSNDPKSFKEAMKDVGWQKSMHEEIRALEENGTWXLEPLPKGKRALGSQWVYRTKYFS 643
Query: 521 NGTVERYKSCLVILGNTQVEGVDFKETFAPVDK 619
NG +ER KS LV+LGN Q G+D+ ETF+PV K
Sbjct: 644 NGDIERLKSRLVVLGNHQEAGIDYHETFSPVAK 676
Score = 26.6 bits (57), Expect(3) = 3e-41
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 219 PLQRSTRNRRPSTSLTDYVCYIA*SILPTSPRRNPRHP 332
P+ + R++ PS L D+V + + P+ +P+HP
Sbjct: 520 PMGKGMRDKFPSVLLRDFVTHTVVAESPSPATPSPQHP 557
>emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera]
Length = 1129
Score = 96.3 bits (238), Expect(3) = 6e-41
Identities = 41/61 (67%), Positives = 48/61 (78%)
Frame = +3
Query: 645 VAVAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCW 824
+A +KNWE+HQMDVHNAFLHGD EEVYM+LPPGF S P+ +C L LYGL+QA CW
Sbjct: 716 IAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFESSDPNLVCRLWKSLYGLKQAPRCW 775
Query: 825 F 827
F
Sbjct: 776 F 776
Score = 92.8 bits (229), Expect(3) = 6e-41
Identities = 47/93 (50%), Positives = 59/93 (63%)
Frame = +2
Query: 341 VSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTILPTEKKTLGCKWVYWIKLKS 520
+ S +P F EAM W +M +EI ALE+N WTL LP K+ LG +WVY K S
Sbjct: 614 IISSNDPKSFKEAMKDVGWQKSMHEEIQALEENGMWTLEPLPKGKRALGSQWVYRTKYFS 673
Query: 521 NGTVERYKSCLVILGNTQVEGVDFKETFAPVDK 619
NG +ER KS LV+LGN Q G+D+ ETF+PV K
Sbjct: 674 NGDIERLKSRLVVLGNHQEAGIDYHETFSPVAK 706
Score = 26.6 bits (57), Expect(3) = 6e-41
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 219 PLQRSTRNRRPSTSLTDYVCYIA*SILPTSPRRNPRHP 332
P+ + R++ PS L D+V + + P+ +P+HP
Sbjct: 550 PMGKGMRDKFPSVLLRDFVTHTVVAESPSPATPSPQHP 587
>emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera]
Length = 1157
Score = 102 bits (255), Expect(2) = 2e-40
Identities = 54/115 (46%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Frame = +2
Query: 281 YSMKHITHIS--TAQPAASKVPVSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTL 454
Y + H + +AQ V++ EPS ++E + W AMR+EI ALE N+TW +
Sbjct: 665 YPLAHYVNCDKFSAQHRFFLATVTTGCEPSTYAEVIKDECWREAMRKEIQALEDNETWIV 724
Query: 455 TILPTEKKTLGCKWVYWIKLKSNGTVERYKSCLVILGNTQVEGVDFKETFAPVDK 619
LP EKK +G KWVY IK S+G++ER K+ LVILGN +VEG+D+ ETFAP K
Sbjct: 725 ENLPLEKKAIGSKWVYKIKYNSDGSIERCKTRLVILGNKKVEGIDYNETFAPTAK 779
Score = 90.9 bits (224), Expect(2) = 2e-40
Identities = 39/61 (63%), Positives = 46/61 (75%)
Frame = +3
Query: 645 VAVAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCW 824
V K WE+HQMDVHNAFLHG+ EEVYM++ PGF SP P ++C LR LYGL+QA CW
Sbjct: 789 VVAMKGWELHQMDVHNAFLHGELDEEVYMQMSPGFASPTPGKVCGLRKSLYGLQQAPKCW 848
Query: 825 F 827
F
Sbjct: 849 F 849
>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
Length = 1468
Score = 102 bits (254), Expect(2) = 3e-40
Identities = 52/106 (49%), Positives = 71/106 (66%)
Frame = +2
Query: 302 HISTAQPAASKVPVSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTILPTEKKT 481
H T+ A V++ +EP+ ++EAM+ W AM EI +L NQT+++ LP K+
Sbjct: 940 HRFTSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSAEIESLRVNQTFSIVNLPPGKRA 999
Query: 482 LGCKWVYWIKLKSNGTVERYKSCLVILGNTQVEGVDFKETFAPVDK 619
LG KWVY IK +S+G +ERYK+ LV+LGN Q EGVD+ ETFAPV K
Sbjct: 1000 LGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAK 1045
Score = 90.1 bits (222), Expect(2) = 3e-40
Identities = 38/61 (62%), Positives = 45/61 (73%)
Frame = +3
Query: 645 VAVAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCW 824
VA A++W +HQMDVHNAFLHGD EEVYM+LP GF P ++C L LYGL+QA CW
Sbjct: 1055 VAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCW 1114
Query: 825 F 827
F
Sbjct: 1115 F 1115
>emb|CAN61658.1| hypothetical protein VITISV_040310 [Vitis vinifera]
Length = 1461
Score = 97.4 bits (241), Expect(2) = 3e-40
Identities = 41/61 (67%), Positives = 48/61 (78%)
Frame = +3
Query: 645 VAVAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCW 824
+A +KNWE+HQMDVHNAFLHGD EEVYM+LPPGF P+ +C LR LYGL+QA CW
Sbjct: 1048 IAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFERSDPNLVCRLRKSLYGLKQAPRCW 1107
Query: 825 F 827
F
Sbjct: 1108 F 1108
Score = 95.1 bits (235), Expect(2) = 3e-40
Identities = 48/93 (51%), Positives = 60/93 (64%)
Frame = +2
Query: 341 VSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTILPTEKKTLGCKWVYWIKLKS 520
+ S +P F EAM W +M +EI ALE+N TWTL LP K+ LG +WVY K S
Sbjct: 946 IISSNDPKSFKEAMKDVGWQKSMHEEIRALEENGTWTLEPLPKGKRALGSQWVYRTKYFS 1005
Query: 521 NGTVERYKSCLVILGNTQVEGVDFKETFAPVDK 619
NG +ER KS LV+LGN Q G+D+ ETF+PV K
Sbjct: 1006 NGDIERLKSRLVVLGNHQEAGIDYHETFSPVAK 1038
>gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1486
Score = 101 bits (252), Expect(3) = 7e-40
Identities = 49/93 (52%), Positives = 66/93 (70%)
Frame = +2
Query: 341 VSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTILPTEKKTLGCKWVYWIKLKS 520
++S EP ++EAM+ W A+ EI +LE TWT+ LP KK LGCKWV+ +K KS
Sbjct: 971 ITSGNEPRNYNEAMLDDHWKGAVSHEIGSLENLGTWTVEDLPPGKKALGCKWVFRLKYKS 1030
Query: 521 NGTVERYKSCLVILGNTQVEGVDFKETFAPVDK 619
+GT+ER+K+ LV+LGN Q EG+D+ ETFAPV K
Sbjct: 1031 DGTLERHKARLVVLGNNQTEGLDYTETFAPVAK 1063
Score = 87.8 bits (216), Expect(3) = 7e-40
Identities = 37/59 (62%), Positives = 45/59 (76%)
Frame = +3
Query: 651 VAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCWF 827
V+ +WE+HQMDVHNAFLHGD EEVYM+ PPGF + ++C LR LYGL+QA CWF
Sbjct: 1075 VSLDWEVHQMDVHNAFLHGDLDEEVYMQFPPGFRTGDKTKVCRLRKSLYGLKQAPRCWF 1133
Score = 22.7 bits (47), Expect(3) = 7e-40
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 177 SEQNSPSDTPSTK-EPLQRSTRNRRPSTSLTDYV 275
+ +SP P+ + E L + R +RP L DYV
Sbjct: 902 ASSSSPVHPPAVQLELLGKGHRPKRPPVKLADYV 935
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 101 bits (251), Expect(2) = 8e-40
Identities = 51/103 (49%), Positives = 70/103 (67%)
Frame = +2
Query: 311 TAQPAASKVPVSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTILPTEKKTLGC 490
T+ A V++ +EP+ ++EAM+ W AM EI +L NQT+++ LP K+ LG
Sbjct: 584 TSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSAEIESLRVNQTFSIVNLPPGKRALGN 643
Query: 491 KWVYWIKLKSNGTVERYKSCLVILGNTQVEGVDFKETFAPVDK 619
KWVY IK +S+G +ERYK+ LV+LGN Q EGVD+ ETFAPV K
Sbjct: 644 KWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAK 686
Score = 90.1 bits (222), Expect(2) = 8e-40
Identities = 38/61 (62%), Positives = 45/61 (73%)
Frame = +3
Query: 645 VAVAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCW 824
VA A++W +HQMDVHNAFLHGD EEVYM+LP GF P ++C L LYGL+QA CW
Sbjct: 696 VAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCW 755
Query: 825 F 827
F
Sbjct: 756 F 756
>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|7269049|emb|CAB79159.1| LTR retrotransposon like
protein [Arabidopsis thaliana]
Length = 1109
Score = 101 bits (251), Expect(2) = 8e-40
Identities = 51/103 (49%), Positives = 70/103 (67%)
Frame = +2
Query: 311 TAQPAASKVPVSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTILPTEKKTLGC 490
T+ A V++ +EP+ ++EAM+ W AM EI +L NQT+++ LP K+ LG
Sbjct: 584 TSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSAEIESLRVNQTFSIVNLPPGKRALGN 643
Query: 491 KWVYWIKLKSNGTVERYKSCLVILGNTQVEGVDFKETFAPVDK 619
KWVY IK +S+G +ERYK+ LV+LGN Q EGVD+ ETFAPV K
Sbjct: 644 KWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAK 686
Score = 90.1 bits (222), Expect(2) = 8e-40
Identities = 38/61 (62%), Positives = 45/61 (73%)
Frame = +3
Query: 645 VAVAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCW 824
VA A++W +HQMDVHNAFLHGD EEVYM+LP GF P ++C L LYGL+QA CW
Sbjct: 696 VAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCW 755
Query: 825 F 827
F
Sbjct: 756 F 756
>emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera]
Length = 1316
Score = 102 bits (254), Expect(3) = 1e-39
Identities = 46/93 (49%), Positives = 66/93 (70%)
Frame = +2
Query: 341 VSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTILPTEKKTLGCKWVYWIKLKS 520
++ + EP + EA+ +W AM +EI ALE NQTW + LP EKK +GCKW+Y IK +
Sbjct: 801 INIEKEPRTYKEAVXDNRWREAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNA 860
Query: 521 NGTVERYKSCLVILGNTQVEGVDFKETFAPVDK 619
+G++ERYK+ LV G TQ+EG+D++E F+PV K
Sbjct: 861 DGSIERYKARLVAQGFTQIEGIDYQEXFSPVAK 893
Score = 83.2 bits (204), Expect(3) = 1e-39
Identities = 37/61 (60%), Positives = 46/61 (75%)
Frame = +3
Query: 645 VAVAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCW 824
V VAK WE+HQMDV+NAFLHGD EEVYM+LP GF + +++C L+ LYGL+QA W
Sbjct: 903 VXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 962
Query: 825 F 827
F
Sbjct: 963 F 963
Score = 25.8 bits (55), Expect(3) = 1e-39
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 168 RGSSEQNSPS-DTPSTKEPLQRSTRNRRPSTSLTDYVCYIA*SI 296
R E+N + + S E L R R + L DY+CY A S+
Sbjct: 717 RDKGEENMETGEDQSQGEMLGRGHRQHKEPRHLQDYICYSARSL 760
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 95.5 bits (236), Expect(2) = 3e-39
Identities = 49/102 (48%), Positives = 65/102 (63%)
Frame = +2
Query: 341 VSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTILPTEKKTLGCKWVYWIKLKS 520
+++ EP F EA+ W AM +E+ ALE N+TW + LPT K +G +WVY K +
Sbjct: 976 ITANDEPKHFKEAVKVKVWNDAMYKEVDALEVNKTWDIVDLPTGKVAIGSQWVYKTKFNA 1035
Query: 521 NGTVERYKSCLVILGNTQVEGVDFKETFAPVDKHHYTNTLDR 646
+GTVERYK+ LV+ GN Q+EG D+ ETFAPV K TL R
Sbjct: 1036 DGTVERYKARLVVQGNNQIEGEDYTETFAPVVKMTTVRTLLR 1077
Score = 94.0 bits (232), Expect(2) = 3e-39
Identities = 39/61 (63%), Positives = 46/61 (75%)
Frame = +3
Query: 645 VAVAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCW 824
+ A WE++QMDVHNAFLHGD EEVYM+LPPGF PD++C LR LYGL+QA CW
Sbjct: 1078 LVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCW 1137
Query: 825 F 827
F
Sbjct: 1138 F 1138
>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1462
Score = 103 bits (256), Expect(2) = 5e-39
Identities = 48/93 (51%), Positives = 65/93 (69%)
Frame = +2
Query: 341 VSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTILPTEKKTLGCKWVYWIKLKS 520
+S +EP + EA++ W A+ EI +LE TWT+ LP KK LGCKWV+ +K KS
Sbjct: 933 ISLGIEPKSYKEAILDENWRCAVSDEIVSLENLGTWTVEDLPPGKKALGCKWVFRLKYKS 992
Query: 521 NGTVERYKSCLVILGNTQVEGVDFKETFAPVDK 619
+GT+ER+K+ LV+LGN Q EG+D+ ETFAPV K
Sbjct: 993 DGTLERHKARLVVLGNKQTEGIDYSETFAPVAK 1025
Score = 85.5 bits (210), Expect(2) = 5e-39
Identities = 36/56 (64%), Positives = 43/56 (76%)
Frame = +3
Query: 660 NWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCWF 827
+WE+HQMDVHNAFLHGD EEVY++ PPGF S ++C LR LYGL+QA CWF
Sbjct: 1040 DWEVHQMDVHNAFLHGDLDEEVYIKFPPGFGSDDNRKVCRLRKALYGLKQAPRCWF 1095
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1501
Score = 94.7 bits (234), Expect(2) = 6e-39
Identities = 50/103 (48%), Positives = 65/103 (63%)
Frame = +2
Query: 341 VSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTILPTEKKTLGCKWVYWIKLKS 520
++ VEP F EA+ W AM E+ ALE N+TW + LP K +G +WV+ K S
Sbjct: 986 ITDNVEPKHFKEAVQIKVWNDAMFTEVDALEINKTWDIVDLPPGKVAIGSQWVFKTKYNS 1045
Query: 521 NGTVERYKSCLVILGNTQVEGVDFKETFAPVDKHHYTNTLDRS 649
+GTVERYK+ LV+ GN QVEG D+KETFAPV + TL R+
Sbjct: 1046 DGTVERYKARLVVQGNKQVEGEDYKETFAPVVRMTTVRTLLRN 1088
Score = 93.6 bits (231), Expect(2) = 6e-39
Identities = 39/58 (67%), Positives = 45/58 (77%)
Frame = +3
Query: 654 AKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCWF 827
A WE++QMDVHNAFLHGD EEVYM+LPPGF PD++C LR LYGL+QA CWF
Sbjct: 1091 ANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWF 1148
>gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 94.0 bits (232), Expect(2) = 1e-38
Identities = 39/61 (63%), Positives = 46/61 (75%)
Frame = +3
Query: 645 VAVAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCW 824
+ A WE++QMDVHNAFLHGD EEVYM+LPPGF PD++C LR LYGL+QA CW
Sbjct: 1078 LVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCW 1137
Query: 825 F 827
F
Sbjct: 1138 F 1138
Score = 93.2 bits (230), Expect(2) = 1e-38
Identities = 48/102 (47%), Positives = 64/102 (62%)
Frame = +2
Query: 341 VSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTILPTEKKTLGCKWVYWIKLKS 520
+++ EP F E + W AM +E+ ALE N+TW + LPT K +G +WVY K +
Sbjct: 976 ITANDEPKHFKEDVKVKVWNDAMYKEVDALEVNKTWDIVDLPTGKVAIGSQWVYKTKFNA 1035
Query: 521 NGTVERYKSCLVILGNTQVEGVDFKETFAPVDKHHYTNTLDR 646
+GTVERYK+ LV+ GN Q+EG D+ ETFAPV K TL R
Sbjct: 1036 DGTVERYKARLVVQGNNQIEGEDYTETFAPVVKMTTVRTLLR 1077
>emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera]
Length = 1196
Score = 99.4 bits (246), Expect(2) = 3e-38
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = +3
Query: 645 VAVAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGFHSPFPDQICLLR*PLYGLRQALHCW 824
+A +KNWE+HQMDVHNAFLHGD EEVYM+LPPGF S P+ +C LR LYGL+QA CW
Sbjct: 892 IAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFESXDPNLVCRLRKSLYGLKQAPRCW 951
Query: 825 F 827
F
Sbjct: 952 F 952
Score = 86.7 bits (213), Expect(2) = 3e-38
Identities = 47/108 (43%), Positives = 61/108 (56%)
Frame = +2
Query: 296 ITHISTAQPAASKVPVSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTILPTEK 475
+TH A+ + P P SEAM W +M +EI AL++N TWTL LP K
Sbjct: 780 VTHTVVAESPSPATP-----SPQHSSEAMKDVGWQKSMHEEIRALKENGTWTLEPLPNGK 834
Query: 476 KTLGCKWVYWIKLKSNGTVERYKSCLVILGNTQVEGVDFKETFAPVDK 619
LG +WVY K SNG +ER K LV+LGN Q +D+ ETF+P+ K
Sbjct: 835 CALGSQWVYRTKYFSNGDIERLKYRLVVLGNHQEADIDYHETFSPIAK 882
>emb|CAN74229.1| hypothetical protein VITISV_000584 [Vitis vinifera]
Length = 1039
Score = 110 bits (274), Expect(2) = 3e-37
Identities = 52/93 (55%), Positives = 69/93 (74%)
Frame = +2
Query: 341 VSSQVEPSWFSEAMIHAKWW*AMRQEIAALEQNQTWTLTILPTEKKTLGCKWVYWIKLKS 520
+++ VEP+ + +A++ KW AM E+ ALEQN TWTLT LP+ + +GCKWVY IK S
Sbjct: 537 ITTLVEPTTYEQAVLDPKWQEAMAAELHALEQNHTWTLTPLPSGHRPIGCKWVYKIKYNS 596
Query: 521 NGTVERYKSCLVILGNTQVEGVDFKETFAPVDK 619
+GTVERYK+ LV G TQ EG+D+KETF+PV K
Sbjct: 597 DGTVERYKARLVAKGFTQREGIDYKETFSPVAK 629
Score = 72.8 bits (177), Expect(2) = 3e-37
Identities = 33/62 (53%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +3
Query: 645 VAVAKNWEIHQMDVHNAFLHGDFSEEVYMRLPPGF-HSPFPDQICLLR*PLYGLRQALHC 821
+A ++W +HQMDV NAFLHGD EEVYM+LPPGF +C LYGL+QA
Sbjct: 639 IAAVRHWSLHQMDVQNAFLHGDLLEEVYMQLPPGFXRQGETPMVCRXNKSLYGLKQASRS 698
Query: 822 WF 827
WF
Sbjct: 699 WF 700