BLASTX nr result
ID: Rauwolfia21_contig00036486
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00036486
(668 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 201 1e-72
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] 201 3e-72
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal... 201 3e-72
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi... 198 8e-72
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A... 197 5e-71
gb|AGW47867.1| polyprotein [Phaseolus vulgaris] 179 9e-64
gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157... 241 1e-61
emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera] 155 5e-56
emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera] 151 7e-55
emb|CBI37296.3| unnamed protein product [Vitis vinifera] 135 9e-52
gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. ... 143 3e-51
gb|AAC95173.1| putative retroelement pol polyprotein [Arabidopsi... 138 2e-50
emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera] 134 8e-50
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ... 132 1e-49
gb|AAO72413.1| gag-pol polyprotein [Oryza sativa Japonica Group]... 136 2e-49
emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera] 131 3e-49
emb|CAE04422.2| OSJNBb0040D15.12 [Oryza sativa Japonica Group] 144 4e-49
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera] 132 7e-49
ref|NP_001064098.1| Os10g0130700 [Oryza sativa Japonica Group] g... 136 2e-48
emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera] 129 6e-48
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 201 bits (511), Expect(2) = 1e-72
Identities = 91/151 (60%), Positives = 117/151 (77%)
Frame = +3
Query: 3 KDRSLWLRDQNNNLVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHLNFNA 182
KD +L +RDQ +NL+ KV MS+NRMF LNI+ A+C+K+ ++E+W H+RFGHLNF
Sbjct: 420 KDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGG 479
Query: 183 LKAMGEKKMVLGLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFD 362
L+ + K+MV GLP INHPN +CE CLLGK + SFPK + SRA +PL+L+HTDVCGP
Sbjct: 480 LELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIK 539
Query: 363 PPSFGKKKYFVLFIDDFTRKTWVYFLQQKSE 455
P S GK YF+LFIDDF+RKTWVYFL++KSE
Sbjct: 540 PKSLGKSNYFLLFIDDFSRKTWVYFLKEKSE 570
Score = 99.4 bits (246), Expect(2) = 1e-72
Identities = 52/78 (66%), Positives = 55/78 (70%)
Frame = +2
Query: 434 FSSTKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPG 613
F K F FK FK EKESG IKT+ SDRGGEFTS EF +C +GIRR LTVP
Sbjct: 564 FLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPR 623
Query: 614 SPQQNGVAERKNRTILNM 667
SPQQNGVAERKNRTIL M
Sbjct: 624 SPQQNGVAERKNRTILEM 641
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 201 bits (511), Expect(2) = 3e-72
Identities = 91/151 (60%), Positives = 117/151 (77%)
Frame = +3
Query: 3 KDRSLWLRDQNNNLVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHLNFNA 182
KD +L +RDQ +NL+ KV MS+NRMF LNI+ A+C+K+ ++E+W H+RFGHLNF
Sbjct: 420 KDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGG 479
Query: 183 LKAMGEKKMVLGLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFD 362
L+ + K+MV GLP INHPN +CE CLLGK + SFPK + SRA +PL+L+HTDVCGP
Sbjct: 480 LELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIK 539
Query: 363 PPSFGKKKYFVLFIDDFTRKTWVYFLQQKSE 455
P S GK YF+LFIDDF+RKTWVYFL++KSE
Sbjct: 540 PKSLGKSNYFLLFIDDFSRKTWVYFLKEKSE 570
Score = 97.8 bits (242), Expect(2) = 3e-72
Identities = 51/78 (65%), Positives = 54/78 (69%)
Frame = +2
Query: 434 FSSTKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPG 613
F K F FK FK EKESG IKT+ SDRGGEFTS EF +C +GIRR LTVP
Sbjct: 564 FLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPR 623
Query: 614 SPQQNGVAERKNRTILNM 667
SPQQNGV ERKNRTIL M
Sbjct: 624 SPQQNGVVERKNRTILEM 641
>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 201 bits (511), Expect(2) = 3e-72
Identities = 91/151 (60%), Positives = 117/151 (77%)
Frame = +3
Query: 3 KDRSLWLRDQNNNLVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHLNFNA 182
KD +L +RDQ +NL+ KV MS+NRMF LNI+ A+C+K+ ++E+W H+RFGHLNF
Sbjct: 420 KDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGG 479
Query: 183 LKAMGEKKMVLGLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFD 362
L+ + K+MV GLP INHPN +CE CLLGK + SFPK + SRA +PL+L+HTDVCGP
Sbjct: 480 LELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIK 539
Query: 363 PPSFGKKKYFVLFIDDFTRKTWVYFLQQKSE 455
P S GK YF+LFIDDF+RKTWVYFL++KSE
Sbjct: 540 PKSLGKSNYFLLFIDDFSRKTWVYFLKEKSE 570
Score = 97.8 bits (242), Expect(2) = 3e-72
Identities = 51/78 (65%), Positives = 54/78 (69%)
Frame = +2
Query: 434 FSSTKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPG 613
F K F FK FK EKESG IKT+ SDRGGEFTS EF +C +GIRR LTVP
Sbjct: 564 FLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPR 623
Query: 614 SPQQNGVAERKNRTILNM 667
SPQQNGV ERKNRTIL M
Sbjct: 624 SPQQNGVVERKNRTILEM 641
>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 198 bits (503), Expect(2) = 8e-72
Identities = 90/151 (59%), Positives = 116/151 (76%)
Frame = +3
Query: 3 KDRSLWLRDQNNNLVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHLNFNA 182
KD +L +RDQ +NL+ KV MS+NRMF LNI+ A+C+K+ ++E+W H+RFGHLNF
Sbjct: 420 KDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGG 479
Query: 183 LKAMGEKKMVLGLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFD 362
L+ + K+MV GLP INHPN +CE CLLGK + SFPK + SRA + L+L+HTDVCGP
Sbjct: 480 LELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIK 539
Query: 363 PPSFGKKKYFVLFIDDFTRKTWVYFLQQKSE 455
P S GK YF+LFIDDF+RKTWVYFL++KSE
Sbjct: 540 PKSLGKSNYFLLFIDDFSRKTWVYFLKEKSE 570
Score = 99.4 bits (246), Expect(2) = 8e-72
Identities = 52/78 (66%), Positives = 55/78 (70%)
Frame = +2
Query: 434 FSSTKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPG 613
F K F FK FK EKESG IKT+ SDRGGEFTS EF +C +GIRR LTVP
Sbjct: 564 FLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPR 623
Query: 614 SPQQNGVAERKNRTILNM 667
SPQQNGVAERKNRTIL M
Sbjct: 624 SPQQNGVAERKNRTILEM 641
>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1272
Score = 197 bits (502), Expect(2) = 5e-71
Identities = 89/151 (58%), Positives = 116/151 (76%)
Frame = +3
Query: 3 KDRSLWLRDQNNNLVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHLNFNA 182
KD +L +RD+ +NL+ KV MS+NRMF LNI+ A+C+K+ ++E+W H+RFGHLNF
Sbjct: 420 KDNNLSIRDKESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGG 479
Query: 183 LKAMGEKKMVLGLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFD 362
L+ + K+MV GLP INHPN +CE CLLG + SFPK + SRA +PL+L+HTDVCGP
Sbjct: 480 LELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIK 539
Query: 363 PPSFGKKKYFVLFIDDFTRKTWVYFLQQKSE 455
P S GK YF+LFIDDF+RKTWVYFL++KSE
Sbjct: 540 PKSLGKSNYFLLFIDDFSRKTWVYFLKEKSE 570
Score = 97.1 bits (240), Expect(2) = 5e-71
Identities = 51/78 (65%), Positives = 54/78 (69%)
Frame = +2
Query: 434 FSSTKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPG 613
F K F FK FK EKESG IKT+ SD GGEFTS EF +C +GIRR LTVP
Sbjct: 564 FLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPR 623
Query: 614 SPQQNGVAERKNRTILNM 667
SPQQNGVAERKNRTIL M
Sbjct: 624 SPQQNGVAERKNRTILEM 641
>gb|AGW47867.1| polyprotein [Phaseolus vulgaris]
Length = 1471
Score = 179 bits (454), Expect(2) = 9e-64
Identities = 80/151 (52%), Positives = 112/151 (74%)
Frame = +3
Query: 3 KDRSLWLRDQNNNLVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHLNFNA 182
KDR L L+++ LVA++ M+RNRM+KLN++++ KC++VN +D+A H+RFGHL+
Sbjct: 441 KDRFLHLKNKQGCLVARIEMARNRMYKLNLRSIREKCLQVNIEDKASLWHLRFGHLHHGG 500
Query: 183 LKAMGEKKMVLGLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFD 362
LK + +K MV GLP +++ CE C+L KH R SFPK A A +PL+L+HTD+CGP
Sbjct: 501 LKELAKKNMVHGLPNMDYEGKFCEECVLSKHVRTSFPKKAQYWAKQPLELIHTDICGPIT 560
Query: 363 PPSFGKKKYFVLFIDDFTRKTWVYFLQQKSE 455
P SF K+YF+ FIDDF+RKTWVYFL++KSE
Sbjct: 561 PESFSGKRYFITFIDDFSRKTWVYFLKEKSE 591
Score = 91.3 bits (225), Expect(2) = 9e-64
Identities = 46/78 (58%), Positives = 54/78 (69%)
Frame = +2
Query: 434 FSSTKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPG 613
F K AF FK FK + E+ + QIK + SDRGGE+TST F +C GIRR LT P
Sbjct: 585 FLKEKSEAFEVFKKFKVMVERTTDKQIKAVRSDRGGEYTSTTFMEYCEEQGIRRFLTAPY 644
Query: 614 SPQQNGVAERKNRTILNM 667
+PQQNGVAERKNRTIL+M
Sbjct: 645 TPQQNGVAERKNRTILDM 662
>gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157|gb|ACN78980.1|
copia-type polyprotein [Glycine max]
Length = 1042
Score = 241 bits (616), Expect = 1e-61
Identities = 112/151 (74%), Positives = 130/151 (86%)
Frame = +3
Query: 3 KDRSLWLRDQNNNLVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHLNFNA 182
KD LWLRD+N+NL+AKV MSRNRMF LNI+T EAKC+K + +DE+W HMRFGHLNF A
Sbjct: 111 KDCCLWLRDKNSNLIAKVFMSRNRMFTLNIKTNEAKCLKASIKDESWCWHMRFGHLNFGA 170
Query: 183 LKAMGEKKMVLGLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFD 362
LK++GE+KMV G+P INHPN LCEACLLGKH RRSFPK A SRA EPLQLV+TDVCGP +
Sbjct: 171 LKSLGEEKMVKGMPQINHPNQLCEACLLGKHARRSFPKEANSRAKEPLQLVYTDVCGPIN 230
Query: 363 PPSFGKKKYFVLFIDDFTRKTWVYFLQQKSE 455
PPS G KYF+LFIDD++RKTWVYFL+QKSE
Sbjct: 231 PPSCGNNKYFLLFIDDYSRKTWVYFLKQKSE 261
Score = 124 bits (310), Expect = 3e-26
Identities = 64/86 (74%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Frame = +2
Query: 413 YSKNVGV-FSSTKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGI 589
YS+ V F K AF+AFKNFK L EKESGY IK L SDRGGEFTS EFN FC +GI
Sbjct: 247 YSRKTWVYFLKQKSEAFVAFKNFKALVEKESGYVIKALRSDRGGEFTSKEFNEFCEKYGI 306
Query: 590 RRPLTVPGSPQQNGVAERKNRTILNM 667
RRPLTVP SPQQNGVAERKNRTILNM
Sbjct: 307 RRPLTVPRSPQQNGVAERKNRTILNM 332
>emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]
Length = 1283
Score = 155 bits (392), Expect(2) = 5e-56
Identities = 71/151 (47%), Positives = 95/151 (62%)
Frame = +3
Query: 3 KDRSLWLRDQNNNLVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHLNFNA 182
KD ++D+ L+A+V M+ NRMF L + C DE W H R+GHLNF
Sbjct: 378 KDGVCRIQDEKLGLIAQVNMTTNRMFPLYLDNTTQNCFSTKLMDEGWLWHFRYGHLNFGG 437
Query: 183 LKAMGEKKMVLGLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFD 362
LK + +K MV GLP I P+ +CE C++GK R FPK R + L+LVH+D+CGP +
Sbjct: 438 LKTLQQKNMVTGLPPIXTPSQICEECVVGKQHRYQFPKGKSWRXNKVLELVHSDICGPIN 497
Query: 363 PPSFGKKKYFVLFIDDFTRKTWVYFLQQKSE 455
P S G K+YF+ FI D++ KTWVYFLQ+KSE
Sbjct: 498 PTSNGGKRYFITFIXDYSXKTWVYFLQEKSE 528
Score = 89.4 bits (220), Expect(2) = 5e-56
Identities = 46/78 (58%), Positives = 52/78 (66%)
Frame = +2
Query: 434 FSSTKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPG 613
F K AF FK+FK L EKE+ IK SD GGE+TS EF NFC HGI++ LT
Sbjct: 522 FLQEKSEAFSTFKSFKMLVEKEAXKPIKIFRSDXGGEYTSQEFVNFCENHGIQKQLTAAY 581
Query: 614 SPQQNGVAERKNRTILNM 667
SPQQNG + RKNRTILNM
Sbjct: 582 SPQQNGXSXRKNRTILNM 599
>emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera]
Length = 1246
Score = 151 bits (382), Expect(2) = 7e-55
Identities = 71/151 (47%), Positives = 93/151 (61%)
Frame = +3
Query: 3 KDRSLWLRDQNNNLVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHLNFNA 182
KD ++D+ L+A+V M+ NRMF L + C V DE W H R+GHLNF
Sbjct: 378 KDGVCRIQDEKLGLIAQVNMTTNRMFPLYLDNTTQNCFSVKLMDEGWLWHFRYGHLNFXX 437
Query: 183 LKAMGEKKMVLGLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFD 362
LK + K MV GLP I + +CE C+ GK R FPK R + L+LVH+D+CGP +
Sbjct: 438 LKTLQXKNMVTGLPXIQTXSQICEECVXGKQHRYQFPKGKSWRXNKVLELVHSDICGPIN 497
Query: 363 PPSFGKKKYFVLFIDDFTRKTWVYFLQQKSE 455
P S G K+YF+ FI D++ KTWVYFLQ+KSE
Sbjct: 498 PTSNGGKRYFITFIXDYSWKTWVYFLQEKSE 528
Score = 89.4 bits (220), Expect(2) = 7e-55
Identities = 46/78 (58%), Positives = 52/78 (66%)
Frame = +2
Query: 434 FSSTKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPG 613
F K AF FK+FK L EKE+ IK SD GGE+TS EF NFC HGI++ LT
Sbjct: 522 FLQEKSEAFSTFKSFKMLVEKEAXKPIKIFRSDXGGEYTSQEFVNFCENHGIQKQLTAAY 581
Query: 614 SPQQNGVAERKNRTILNM 667
SPQQNG +ERKN TILNM
Sbjct: 582 SPQQNGXSERKNXTILNM 599
>emb|CBI37296.3| unnamed protein product [Vitis vinifera]
Length = 3048
Score = 135 bits (341), Expect(2) = 9e-52
Identities = 68/140 (48%), Positives = 87/140 (62%), Gaps = 2/140 (1%)
Frame = +3
Query: 42 LVAKVAMSRNRMFKLNI--QTVEAKCMKVNAQDEAWR*HMRFGHLNFNALKAMGEKKMVL 215
L+ MS NRMF L Q + + C +D H R+GHL+F LK + ++KMV
Sbjct: 417 LIMDTKMSSNRMFMLYALSQPISSTCFNTVTEDILQLWHCRYGHLSFQGLKTLQQRKMVN 476
Query: 216 GLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFDPPSFGKKKYFV 395
GLP P+ LC+ CL+GK R S PK + RA E LQLVH D+CGP +P S KK+Y +
Sbjct: 477 GLPQFQPPSKLCKDCLVGKQHRSSIPKKSNWRAAEILQLVHADICGPINPISNSKKRYLL 536
Query: 396 LFIDDFTRKTWVYFLQQKSE 455
F DDF+RKTWVYFL +KSE
Sbjct: 537 TFTDDFSRKTWVYFLVEKSE 556
Score = 94.7 bits (234), Expect(2) = 9e-52
Identities = 48/78 (61%), Positives = 55/78 (70%)
Frame = +2
Query: 434 FSSTKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPG 613
F K AF FK+FKT EKE+ ++ L +DRGGEFTS EF FC HGIRR LT
Sbjct: 550 FLVEKSEAFAVFKSFKTYVEKETSSFLRCLRTDRGGEFTSQEFAIFCDVHGIRRQLTAAY 609
Query: 614 SPQQNGVAERKNRTILNM 667
+PQQNGVAERKNRTI+NM
Sbjct: 610 TPQQNGVAERKNRTIMNM 627
>gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. botrytis]
Length = 1239
Score = 143 bits (361), Expect(2) = 3e-51
Identities = 65/151 (43%), Positives = 94/151 (62%)
Frame = +3
Query: 3 KDRSLWLRDQNNNLVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHLNFNA 182
KD L LRD + L+ KV S NR++K++++ + C+ +E WR H R GH+NF
Sbjct: 286 KDNYLTLRDPSGRLLVKVLRSPNRLYKVSLKVGKPSCLLTKINEEPWRWHARLGHINFKT 345
Query: 183 LKAMGEKKMVLGLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFD 362
+K M + +MV GLP IN LCE+CL+GK TR SFP A R+++ L+L+H D+CGP
Sbjct: 346 IKDMAKLEMVRGLPEINEEKKLCESCLVGKQTRNSFPSATPHRSSQVLELLHADLCGPIS 405
Query: 363 PPSFGKKKYFVLFIDDFTRKTWVYFLQQKSE 455
P + + +Y + IDD TR W L++KSE
Sbjct: 406 PSTLAQNRYIFVIIDDNTRYMWSILLKEKSE 436
Score = 85.5 bits (210), Expect(2) = 3e-51
Identities = 42/74 (56%), Positives = 51/74 (68%)
Frame = +2
Query: 446 KIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPGSPQQ 625
K F FK FK L EKE I TL +DRGGEFTS +F ++C +GIRR LT P +PQQ
Sbjct: 434 KSEVFEKFKTFKALVEKEVNKVIVTLRTDRGGEFTSRDFQDYCNNNGIRRHLTAPYTPQQ 493
Query: 626 NGVAERKNRTILNM 667
NGV ER+NRT++ M
Sbjct: 494 NGVVERRNRTLMEM 507
>gb|AAC95173.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1200
Score = 138 bits (347), Expect(2) = 2e-50
Identities = 59/151 (39%), Positives = 97/151 (64%)
Frame = +3
Query: 3 KDRSLWLRDQNNNLVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHLNFNA 182
KD L L D++ NL+ K SRNR++++ ++ KC+++ A ++ + H R GH+N
Sbjct: 342 KDNYLTLHDRDGNLLVKATRSRNRLYRVELKVKNTKCLQLAALNDLTKWHARLGHINLET 401
Query: 183 LKAMGEKKMVLGLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFD 362
+KAM K+ V+G+P +C +C+LGK R+ FPKA RA++ L+L+H D+CGP
Sbjct: 402 IKAMVTKEFVIGIPSAPKEKEICASCMLGKQARQVFPKATTYRASQILELIHGDLCGPIS 461
Query: 363 PPSFGKKKYFVLFIDDFTRKTWVYFLQQKSE 455
PP+ K++Y ++ IDD +R W + L++KSE
Sbjct: 462 PPTAAKRRYILVLIDDHSRFMWSFLLKEKSE 492
Score = 87.8 bits (216), Expect(2) = 2e-50
Identities = 44/74 (59%), Positives = 51/74 (68%)
Frame = +2
Query: 446 KIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPGSPQQ 625
K AF FK FK E+E+G +IKTL +DRGGEF S EF FC GI R LT P +PQQ
Sbjct: 490 KSEAFGKFKTFKATVEQETGEKIKTLRTDRGGEFLSQEFQTFCEEEGIIRHLTAPYTPQQ 549
Query: 626 NGVAERKNRTILNM 667
NGV ER+NRT+L M
Sbjct: 550 NGVVERRNRTLLGM 563
>emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]
Length = 1424
Score = 134 bits (338), Expect(2) = 8e-50
Identities = 67/148 (45%), Positives = 91/148 (61%)
Frame = +3
Query: 12 SLWLRDQNNNLVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHLNFNALKA 191
+++ ++Q NLV K+ M +NR F + + VE +++ +EAW H RFGHLNFN+LK
Sbjct: 509 TIYDKEQRRNLVKKIKMEKNRSFPIVFKYVENVALRMEDVEEAWLWHRRFGHLNFNSLKM 568
Query: 192 MGEKKMVLGLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFDPPS 371
+ ++KM H R+SFPK RA + L+LVHTD+CGP PS
Sbjct: 569 LCQRKM---------------------HHRQSFPKGVAWRAKKVLELVHTDICGPMSTPS 607
Query: 372 FGKKKYFVLFIDDFTRKTWVYFLQQKSE 455
G KYFVLFIDDFTR TWV+F++QKSE
Sbjct: 608 QGNNKYFVLFIDDFTRMTWVFFMKQKSE 635
Score = 89.4 bits (220), Expect(2) = 8e-50
Identities = 43/78 (55%), Positives = 53/78 (67%)
Frame = +2
Query: 434 FSSTKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPG 613
F K F FK FK+ EK+SG IKTL SDRG E+TS++F NFC G+ R LTV
Sbjct: 629 FMKQKSEVFSIFKKFKSFVEKQSGCYIKTLRSDRGMEYTSSQFGNFCEDEGVERQLTVAY 688
Query: 614 SPQQNGVAERKNRTILNM 667
+PQQNGV ERKN+T++ M
Sbjct: 689 TPQQNGVVERKNQTVMEM 706
>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1333
Score = 132 bits (332), Expect(2) = 1e-49
Identities = 65/142 (45%), Positives = 93/142 (65%)
Frame = +3
Query: 30 QNNNLVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHLNFNALKAMGEKKM 209
++ +A+V M++N+MF L+I V + V ++E H+R+GHLN N LK + +K M
Sbjct: 406 ESGRTIARVPMTQNKMFPLDISNVGNSALVVKEKNETNLWHLRYGHLNVNWLKLLVQKDM 465
Query: 210 VLGLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFDPPSFGKKKY 389
V+GLP I + LCE C+ GK TR+SFP RAT L+LVH D+CGP S G +Y
Sbjct: 466 VIGLPNIKELD-LCEGCIYGKQTRKSFPVGKSWRATTCLELVHADLCGPMKMESLGGSRY 524
Query: 390 FVLFIDDFTRKTWVYFLQQKSE 455
F++F DD++R +WVYFL+ KSE
Sbjct: 525 FLMFTDDYSRFSWVYFLKFKSE 546
Score = 91.3 bits (225), Expect(2) = 1e-49
Identities = 44/78 (56%), Positives = 54/78 (69%)
Frame = +2
Query: 434 FSSTKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPG 613
F K F FK FK E +SG +IK+L +DRGGEF S +FN FC +GIRR LT P
Sbjct: 540 FLKFKSETFETFKKFKAFVENQSGNKIKSLRTDRGGEFLSNDFNLFCEENGIRRELTAPY 599
Query: 614 SPQQNGVAERKNRTILNM 667
+P+QNGVAERKNRT++ M
Sbjct: 600 TPEQNGVAERKNRTVVEM 617
>gb|AAO72413.1| gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108710383|gb|ABF98178.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1339
Score = 136 bits (342), Expect(2) = 2e-49
Identities = 58/138 (42%), Positives = 88/138 (63%)
Frame = +3
Query: 42 LVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHLNFNALKAMGEKKMVLGL 221
LV KV S NR++++ +Q C+ + D AW H R GH+NF+ALK + +K+M G+
Sbjct: 413 LVMKVRRSSNRLYRIELQLASPVCLLASLDDPAWLWHARLGHVNFHALKLLVDKEMAAGV 472
Query: 222 PYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFDPPSFGKKKYFVLF 401
P ++HPN LC+ACL+ K R+ FP A A PL+L+H D+CGP P +F +YF+L
Sbjct: 473 PAVHHPNQLCQACLVAKQVRQPFPGMANYLAEAPLELLHMDLCGPITPSTFTGNRYFMLI 532
Query: 402 IDDFTRKTWVYFLQQKSE 455
+DDF+ WV+ ++ K +
Sbjct: 533 VDDFSHWMWVFVIKSKDQ 550
Score = 86.7 bits (213), Expect(2) = 2e-49
Identities = 45/75 (60%), Positives = 52/75 (69%)
Frame = +2
Query: 443 TKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPGSPQ 622
+K A AF+ FK LAE +G IKTL +DRGGEF S EF C A GI R LTVP SPQ
Sbjct: 547 SKDQALAAFEKFKPLAENTAGRTIKTLRTDRGGEFLSGEFARVCDAAGIERHLTVPYSPQ 606
Query: 623 QNGVAERKNRTILNM 667
QNGV ER+NRT++ M
Sbjct: 607 QNGVVERRNRTVMAM 621
>emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]
Length = 1265
Score = 131 bits (329), Expect(2) = 3e-49
Identities = 65/140 (46%), Positives = 88/140 (62%), Gaps = 2/140 (1%)
Frame = +3
Query: 42 LVAKVAMSRNRMFKLNI--QTVEAKCMKVNAQDEAWR*HMRFGHLNFNALKAMGEKKMVL 215
++ ++ MS NRMF L+ Q + + C +D H R+GHL+F LK + +KKMV
Sbjct: 376 VITEMKMSSNRMFMLHAISQPIASTCFNAITEDIVHLWHCRYGHLSFKGLKTLQQKKMVN 435
Query: 216 GLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFDPPSFGKKKYFV 395
GLP + P LC+ CL+GK R SFP + RA++ L LVH D+ GP P S KK+Y +
Sbjct: 436 GLPQLKSPLRLCKDCLVGKQQRYSFPWKSTWRASQILXLVHADIXGPIKPISNSKKRYLI 495
Query: 396 LFIDDFTRKTWVYFLQQKSE 455
F DDF+RKTWVYFL +KSE
Sbjct: 496 TFTDDFSRKTWVYFLIEKSE 515
Score = 90.9 bits (224), Expect(2) = 3e-49
Identities = 46/78 (58%), Positives = 53/78 (67%)
Frame = +2
Query: 434 FSSTKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPG 613
F K AF+ FK FK EKE+ I+ L +DRGGEFTS EF NFC +GIRR LT
Sbjct: 509 FLIEKSEAFVVFKRFKIHVEKETNSFIRALXTDRGGEFTSXEFTNFCDVNGIRRQLTAAY 568
Query: 614 SPQQNGVAERKNRTILNM 667
+PQQN V ERKNRTI+NM
Sbjct: 569 TPQQNXVXERKNRTIMNM 586
>emb|CAE04422.2| OSJNBb0040D15.12 [Oryza sativa Japonica Group]
Length = 893
Score = 144 bits (362), Expect(2) = 4e-49
Identities = 61/138 (44%), Positives = 92/138 (66%)
Frame = +3
Query: 42 LVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHLNFNALKAMGEKKMVLGL 221
LV KV + NR++++ +Q C+ + D AW H R GH+NF+ALK + +K+MV G+
Sbjct: 273 LVMKVRRTSNRLYRIELQLASPVCLLASLDDPAWLWHARLGHVNFHALKLLVDKEMVAGV 332
Query: 222 PYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFDPPSFGKKKYFVLF 401
P ++HPN LC+ACL+ K R+SFP A RA PL+L+H D+CGP P +F +YF+L
Sbjct: 333 PAVHHPNQLCQACLVAKQVRQSFPGMANYRAEAPLELLHMDLCGPITPSTFAGNRYFMLI 392
Query: 402 IDDFTRKTWVYFLQQKSE 455
+DDF+R WV+ ++ K +
Sbjct: 393 VDDFSRWMWVFVIKSKDQ 410
Score = 77.8 bits (190), Expect(2) = 4e-49
Identities = 41/75 (54%), Positives = 48/75 (64%)
Frame = +2
Query: 443 TKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPGSPQ 622
+K A A + FK LAE +G IKTL +DRG EF S EF C A GI R LT P SPQ
Sbjct: 407 SKDQALAASEKFKPLAENTAGRTIKTLRTDRGSEFLSGEFARVCDAAGIERHLTAPYSPQ 466
Query: 623 QNGVAERKNRTILNM 667
QNGV E +NRT++ M
Sbjct: 467 QNGVVEHRNRTVMAM 481
>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
Length = 1274
Score = 132 bits (332), Expect(2) = 7e-49
Identities = 58/142 (40%), Positives = 92/142 (64%)
Frame = +3
Query: 30 QNNNLVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHLNFNALKAMGEKKM 209
+++ ++ V M+ N++F L + ++E + V E+ H+R+GHLN LK + +K+M
Sbjct: 401 KSDQIIVNVRMAANKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEM 460
Query: 210 VLGLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFDPPSFGKKKY 389
V GLP I+ N +CE C+ GK +++ FPK RA+ L+++H D+CGP SFG +Y
Sbjct: 461 VFGLPKIDSVN-VCEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRY 519
Query: 390 FVLFIDDFTRKTWVYFLQQKSE 455
F+LF DD +R +WVYFLQ K+E
Sbjct: 520 FLLFTDDHSRMSWVYFLQSKAE 541
Score = 88.6 bits (218), Expect(2) = 7e-49
Identities = 43/78 (55%), Positives = 51/78 (65%)
Frame = +2
Query: 434 FSSTKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPG 613
F +K F FK FK EK+SG IK L +DRGGEF S +F FC G+ R LT P
Sbjct: 535 FLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFKVFCEEEGLHRELTTPY 594
Query: 614 SPQQNGVAERKNRTILNM 667
SP+QNGVAERKNRT++ M
Sbjct: 595 SPEQNGVAERKNRTVVEM 612
>ref|NP_001064098.1| Os10g0130700 [Oryza sativa Japonica Group]
gi|20514806|gb|AAM23251.1|AC092553_17 Putative pol
polyprotein [Oryza sativa Japonica Group]
gi|21326494|gb|AAM47622.1|AC122147_11 Putative pol
polyprotein [Oryza sativa Japonica Group]
gi|31430018|gb|AAP51989.1| retrotransposon protein,
putative, Ty1-copia subclass, expressed [Oryza sativa
Japonica Group] gi|113638707|dbj|BAF26012.1|
Os10g0130700 [Oryza sativa Japonica Group]
Length = 1426
Score = 136 bits (343), Expect(2) = 2e-48
Identities = 67/155 (43%), Positives = 90/155 (58%), Gaps = 5/155 (3%)
Frame = +3
Query: 6 DRSLW-----LRDQNNNLVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHL 170
D +W LRD + L+AKV N ++ L + CM + D AWR H RFGHL
Sbjct: 465 DAHIWGGVCTLRDPDGLLLAKVKRDINYLYILKLHIANPVCMAASGGDMAWRWHARFGHL 524
Query: 171 NFNALKAMGEKKMVLGLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVC 350
NF +L+ + + MV GLP I+H + LC+ CL GK R FP+ A RA E L+LVH D+C
Sbjct: 525 NFQSLRRLAQGNMVRGLPIIDHTDQLCDGCLAGKQRRLPFPEEAKFRAQEALELVHGDLC 584
Query: 351 GPFDPPSFGKKKYFVLFIDDFTRKTWVYFLQQKSE 455
GP P + G +KYF+L +DD +R W+ L K E
Sbjct: 585 GPITPATPGGRKYFLLLVDDMSRHMWIRLLSGKHE 619
Score = 83.2 bits (204), Expect(2) = 2e-48
Identities = 40/74 (54%), Positives = 52/74 (70%)
Frame = +2
Query: 440 STKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPGSP 619
S K A A K F+ E ESG +++ L +DRGGEFTS EF ++C HG+RR LT P SP
Sbjct: 615 SGKHEAATAIKQFQVGVELESGRKLRALRTDRGGEFTSVEFMDYCADHGMRRELTAPYSP 674
Query: 620 QQNGVAERKNRTIL 661
QQNGV ER+N+T++
Sbjct: 675 QQNGVVERRNQTVV 688
>emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]
Length = 1183
Score = 129 bits (324), Expect(2) = 6e-48
Identities = 57/142 (40%), Positives = 92/142 (64%)
Frame = +3
Query: 30 QNNNLVAKVAMSRNRMFKLNIQTVEAKCMKVNAQDEAWR*HMRFGHLNFNALKAMGEKKM 209
+++ ++ V M+ N++F L + ++E + V E+ H+R+GHLN LK + +K+M
Sbjct: 335 KSDQIIFDVRMAANKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEM 394
Query: 210 VLGLPYINHPNHLCEACLLGKHTRRSFPKAAISRATEPLQLVHTDVCGPFDPPSFGKKKY 389
V GLP I+ N +CE C+ GK +++ FPK RA+ L+++H D+CGP SFG +Y
Sbjct: 395 VFGLPKIDSVN-VCEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRY 453
Query: 390 FVLFIDDFTRKTWVYFLQQKSE 455
F+LF +D +R +WVYFLQ K+E
Sbjct: 454 FLLFTNDHSRMSWVYFLQSKAE 475
Score = 88.6 bits (218), Expect(2) = 6e-48
Identities = 43/78 (55%), Positives = 51/78 (65%)
Frame = +2
Query: 434 FSSTKIGAFIAFKNFKTLAEKESGYQIKTLSSDRGGEFTSTEFNNFCIAHGIRRPLTVPG 613
F +K F FK FK EK+SG IK L +DRGGEF S +F FC G+ R LT P
Sbjct: 469 FLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFKVFCEEEGLHRELTTPY 528
Query: 614 SPQQNGVAERKNRTILNM 667
SP+QNGVAERKNRT++ M
Sbjct: 529 SPEQNGVAERKNRTVVEM 546