BLASTX nr result
ID: Rauwolfia21_contig00036204
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00036204
(364 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN78587.1| hypothetical protein VITISV_043910 [Vitis vinifera] 224 1e-56
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 223 3e-56
gb|AAP43919.1| integrase [Gossypium hirsutum] 220 1e-55
gb|AAD17351.1| contains similarity to retrovirus-related polypro... 218 7e-55
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 216 2e-54
ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group] g... 216 2e-54
gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|... 216 2e-54
ref|XP_006575965.1| PREDICTED: uncharacterized protein LOC102669... 216 3e-54
emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera] 216 3e-54
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 214 1e-53
gb|AAX14649.1| gag-pol polyprotein [Setaria pumila] 213 2e-53
ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664... 213 2e-53
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 212 4e-53
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 212 4e-53
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 212 4e-53
gb|AAP43914.1| integrase [Gossypium raimondii] 212 4e-53
emb|CAN81775.1| hypothetical protein VITISV_020071 [Vitis vinifera] 211 8e-53
emb|CAN81776.1| hypothetical protein VITISV_020072 [Vitis vinifera] 211 8e-53
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 211 8e-53
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 211 8e-53
>emb|CAN78587.1| hypothetical protein VITISV_043910 [Vitis vinifera]
Length = 565
Score = 224 bits (570), Expect = 1e-56
Identities = 101/120 (84%), Positives = 108/120 (90%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
FYW HMKRDVER CGRCVTCRQAKSRVQPHGLY PL IPSEPWIDIS+DF+LG PRS+ G
Sbjct: 427 FYWSHMKRDVERICGRCVTCRQAKSRVQPHGLYXPLXIPSEPWIDISIDFVLGLPRSKCG 486
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
RDSIFVVVDRFS M HFIPCHK D+ SHV DLFFREI+RLHGMPRTI+S+RDAK LSYFW
Sbjct: 487 RDSIFVVVDRFSMMTHFIPCHKXDNVSHVVDLFFREIIRLHGMPRTIVSNRDAKLLSYFW 546
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 223 bits (567), Expect = 3e-56
Identities = 97/120 (80%), Positives = 110/120 (91%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
F+WPHMKRDVER C RC TC+QAK++ QPHGLYTPLPIPS PW DISMDF++G PR+R G
Sbjct: 1413 FHWPHMKRDVERICERCPTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDFVVGLPRTRTG 1472
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
+DSIFVVVDRFSKMAHFIPCHKTDDA H+A+LFFRE+VRLHGMP+TI+SDRD KFLSYFW
Sbjct: 1473 KDSIFVVVDRFSKMAHFIPCHKTDDAIHIANLFFREVVRLHGMPKTIVSDRDTKFLSYFW 1532
>gb|AAP43919.1| integrase [Gossypium hirsutum]
Length = 334
Score = 220 bits (561), Expect = 1e-55
Identities = 91/120 (75%), Positives = 113/120 (94%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
F+WPHMK+DVE+ C +C+TC+QAKS+V HGLYTPLPIP+ PW+D+SMDF+LG PR+++G
Sbjct: 192 FHWPHMKKDVEKVCSKCITCKQAKSKVMLHGLYTPLPIPTSPWVDLSMDFILGLPRTKKG 251
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
RDSIFVVVDRFSKM+HFIPCHKTDDA+HVADLFF+E+VRLHG+P+TI+SDRD KFLS+FW
Sbjct: 252 RDSIFVVVDRFSKMSHFIPCHKTDDATHVADLFFKEVVRLHGIPKTIVSDRDVKFLSHFW 311
>gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC
zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051,
E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1|
putative polyprotein [Arabidopsis thaliana]
Length = 1138
Score = 218 bits (555), Expect = 7e-55
Identities = 95/120 (79%), Positives = 108/120 (90%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
F+WPHMKRDVER C RC TC+QAK++ QPHGL TPLPIP PW DISMDF++G PR+R G
Sbjct: 788 FHWPHMKRDVERMCERCTTCKQAKAKSQPHGLCTPLPIPLHPWNDISMDFVVGLPRTRTG 847
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
+DSIFVVVDRFSKMAHFIPCHKTDDA H+A+LFFRE+VRLHGMP+TI+SDRD KFLSYFW
Sbjct: 848 KDSIFVVVDRFSKMAHFIPCHKTDDAMHIANLFFREVVRLHGMPKTIVSDRDTKFLSYFW 907
>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1713
Score = 216 bits (551), Expect = 2e-54
Identities = 95/120 (79%), Positives = 108/120 (90%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
FYWP M+RDV+R RCVTC +AKS++ PHGLYTPLP+PS PW DISMDF+LG PR++RG
Sbjct: 1225 FYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRG 1284
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
RDSIFVVVDRFSKMAHFIPCHK+DDASH+A LFF EIVRLHGMP+TI+SDRD KFLSYFW
Sbjct: 1285 RDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDRDTKFLSYFW 1344
>ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group]
gi|113631773|dbj|BAF25454.1| Os09g0491900 [Oryza sativa
Japonica Group]
Length = 681
Score = 216 bits (551), Expect = 2e-54
Identities = 95/120 (79%), Positives = 108/120 (90%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
FYWP M+RDV+R RCVTC +AKS++ PHGLYTPLP+PS PW DISMDF+LG PR++RG
Sbjct: 193 FYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRG 252
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
RDSIFVVVDRFSKMAHFIPCHK+DDASH+A LFF EIVRLHGMP+TI+SDRD KFLSYFW
Sbjct: 253 RDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDRDTKFLSYFW 312
>gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group]
gi|52353557|gb|AAU44123.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 681
Score = 216 bits (551), Expect = 2e-54
Identities = 95/120 (79%), Positives = 108/120 (90%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
FYWP M+RDV+R RCVTC +AKS++ PHGLYTPLP+PS PW DISMDF+LG PR++RG
Sbjct: 193 FYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRG 252
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
RDSIFVVVDRFSKMAHFIPCHK+DDASH+A LFF EIVRLHGMP+TI+SDRD KFLSYFW
Sbjct: 253 RDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDRDTKFLSYFW 312
>ref|XP_006575965.1| PREDICTED: uncharacterized protein LOC102669237, partial [Glycine
max]
Length = 1520
Score = 216 bits (549), Expect = 3e-54
Identities = 94/120 (78%), Positives = 107/120 (89%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
FYWPHMK+DV + C RCV C QAKSRV PHGLY PLPIPS PW+DISMDF+LG PR++RG
Sbjct: 1269 FYWPHMKKDVHKHCTRCVACLQAKSRVMPHGLYIPLPIPSTPWVDISMDFVLGLPRTQRG 1328
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
DSIFVVVDRFSKMAHFIPCHK DDA H++ LFF+E+VRLHG+PRTI+SDRDAKFLS+FW
Sbjct: 1329 VDSIFVVVDRFSKMAHFIPCHKVDDAFHISKLFFKEVVRLHGLPRTIVSDRDAKFLSHFW 1388
>emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera]
Length = 1281
Score = 216 bits (549), Expect = 3e-54
Identities = 95/120 (79%), Positives = 107/120 (89%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
F+WP MK DVER C RC+TCRQAKSRV PHGLYTPLP+PS PW+DISMDF+LG PRSR G
Sbjct: 928 FFWPKMKCDVERACARCITCRQAKSRVLPHGLYTPLPVPSAPWVDISMDFVLGLPRSRNG 987
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
R SIFVVVDRFSKM +FI CHK DDA+H+A+LFFREIVRLHG+PR+I+SDRD KFLSYFW
Sbjct: 988 RXSIFVVVDRFSKMTYFISCHKIDDATHIANLFFREIVRLHGVPRSIVSDRDVKFLSYFW 1047
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 214 bits (544), Expect = 1e-53
Identities = 93/120 (77%), Positives = 108/120 (90%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
F+WP M+RDV R RC TC++AKSR+ PHGLY PLP+PS PW DISMDF+LG PR+R+G
Sbjct: 1225 FFWPKMRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFVLGLPRTRKG 1284
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
RDS+FVVVDRFSKMAHFIPCHKTDDA+H+ADLFFREIVRLHG+P TI+SDRDAKFLS+FW
Sbjct: 1285 RDSVFVVVDRFSKMAHFIPCHKTDDATHIADLFFREIVRLHGVPNTIVSDRDAKFLSHFW 1344
>gb|AAX14649.1| gag-pol polyprotein [Setaria pumila]
Length = 185
Score = 213 bits (543), Expect = 2e-53
Identities = 92/120 (76%), Positives = 107/120 (89%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
F+WP M+RDV+R RC TC++AKSR+ PHGLY PLP+PS PW DISMDF++G PR+R+G
Sbjct: 38 FFWPKMRRDVKRFVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFVMGLPRTRKG 97
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
RDS+FVVVDRFSKMAHFIPCHKTDDA H+ADLFFREIVRLHG+P TI+SDRD KFLSYFW
Sbjct: 98 RDSVFVVVDRFSKMAHFIPCHKTDDAPHIADLFFREIVRLHGVPNTIVSDRDVKFLSYFW 157
>ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664455 [Glycine max]
Length = 1176
Score = 213 bits (542), Expect = 2e-53
Identities = 89/120 (74%), Positives = 108/120 (90%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
F+WPHM+RDV + CG C+ C+QAKS+V+PHGLYTPLP+P PW DISMDF+LG P+++ G
Sbjct: 819 FFWPHMRRDVHKFCGHCIVCKQAKSKVKPHGLYTPLPVPEYPWTDISMDFVLGLPKTKNG 878
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
+DS+FVVVDRFSKMAHFIPC K DDA HVADLFF+EIVRLHG+PR+I+SDRDAKFLS+FW
Sbjct: 879 KDSVFVVVDRFSKMAHFIPCKKVDDACHVADLFFKEIVRLHGLPRSIVSDRDAKFLSHFW 938
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 212 bits (540), Expect = 4e-53
Identities = 93/120 (77%), Positives = 107/120 (89%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
F+WP M+RDV R RC TC++AKSR+ PHGLY PLP+P+ PW DISMDF+LG PR++RG
Sbjct: 1222 FFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRG 1281
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
RDSIFVVVDRFSKMAHFIPCHKTDDASH+ADLFFREIVRLHG+P TI+SDRD KFLS+FW
Sbjct: 1282 RDSIFVVVDRFSKMAHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFW 1341
Score = 116 bits (290), Expect = 4e-24
Identities = 53/121 (43%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQ-PHGLYTPLPIPSEPWIDISMDFMLGFPRSRR 186
++W MKR++ C C++ K+ Q P GL PL +P W +I MDF+ G P+++
Sbjct: 2043 YWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQG 2102
Query: 185 GRDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYF 6
G DSI+VVVDR +K+A FIP T + +A+L+F IV LHG+P+ I+SDR+++F S+F
Sbjct: 2103 GYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRESQFTSHF 2162
Query: 5 W 3
W
Sbjct: 2163 W 2163
>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 889
Score = 212 bits (540), Expect = 4e-53
Identities = 93/120 (77%), Positives = 108/120 (90%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
F+WP M+RDVER RC TC++AKSR+ PHGLY PLP+PS PW DISMDF+LG PR+++G
Sbjct: 563 FFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKG 622
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
RDSIFVVVDRFSKMAHFIPCHK+DDA+HVADLFFREIVRLHG+P TI+SDRD KFLS+FW
Sbjct: 623 RDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFW 682
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 212 bits (540), Expect = 4e-53
Identities = 93/120 (77%), Positives = 108/120 (90%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
F+WP M+RDVER RC TC++AKSR+ PHGLY PLP+PS PW DISMDF+LG PR+++G
Sbjct: 1250 FFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKG 1309
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
RDSIFVVVDRFSKMAHFIPCHK+DDA+HVADLFFREIVRLHG+P TI+SDRD KFLS+FW
Sbjct: 1310 RDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFW 1369
>gb|AAP43914.1| integrase [Gossypium raimondii]
Length = 340
Score = 212 bits (540), Expect = 4e-53
Identities = 91/120 (75%), Positives = 108/120 (90%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
FYWP+M++ VE+ C C+TC+Q KS V PHGLYTPLP+PS PW DIS+DF++G P ++ G
Sbjct: 192 FYWPNMRKLVEKICSTCITCKQDKSTVMPHGLYTPLPVPSSPWTDISIDFVIGLPITKHG 251
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
RDSIFVVVDRFSKMAHFIPCHKTDDA+HVADLFFRE+VRLHG+PRTI+SDRDAKFLS+FW
Sbjct: 252 RDSIFVVVDRFSKMAHFIPCHKTDDATHVADLFFREVVRLHGIPRTIVSDRDAKFLSHFW 311
>emb|CAN81775.1| hypothetical protein VITISV_020071 [Vitis vinifera]
Length = 1159
Score = 211 bits (537), Expect = 8e-53
Identities = 93/120 (77%), Positives = 106/120 (88%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
F+WP MKRDVER C RC+T RQ KS+V PHGLYTPLP+PS PW DISMDF+LG PRSR G
Sbjct: 887 FFWPKMKRDVERVCVRCITYRQTKSKVLPHGLYTPLPVPSAPWFDISMDFVLGLPRSRNG 946
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
R+SIFVVVDRFSKM HFI CHK DDA+H+A+LFFREIVRLHG+PR+I+SDRD KFL+YFW
Sbjct: 947 RNSIFVVVDRFSKMRHFISCHKIDDATHIANLFFREIVRLHGVPRSIVSDRDVKFLNYFW 1006
>emb|CAN81776.1| hypothetical protein VITISV_020072 [Vitis vinifera]
Length = 366
Score = 211 bits (537), Expect = 8e-53
Identities = 93/120 (77%), Positives = 106/120 (88%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
F+WP MKRDVER C RC+T RQ KS+V PHGLYTPLP+PS PW DISMDF+LG PRSR G
Sbjct: 192 FFWPKMKRDVERVCVRCITYRQTKSKVLPHGLYTPLPVPSAPWFDISMDFVLGLPRSRNG 251
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
R+SIFVVVDRFSKM HFI CHK DDA+H+A+LFFREIVRLHG+PR+I+SDRD KFL+YFW
Sbjct: 252 RNSIFVVVDRFSKMRHFISCHKIDDATHIANLFFREIVRLHGVPRSIVSDRDVKFLNYFW 311
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 211 bits (537), Expect = 8e-53
Identities = 92/120 (76%), Positives = 109/120 (90%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
F+WP M+RDVER RC TC++AKSR+ PHGLY PLP+PS PW DISMDF+LG PR+++G
Sbjct: 1281 FFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKG 1340
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
RDSIFVVVDRFSKMAHFIPCHK+DDA++VADLFFREI+RLHG+P TI+SDRDAKFLS+FW
Sbjct: 1341 RDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFW 1400
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 211 bits (537), Expect = 8e-53
Identities = 92/120 (76%), Positives = 109/120 (90%)
Frame = -3
Query: 362 FYWPHMKRDVERTCGRCVTCRQAKSRVQPHGLYTPLPIPSEPWIDISMDFMLGFPRSRRG 183
F+WP M+RDVER RC TC++AKSR+ PHGLY PLP+PS PW DISMDF+LG PR+++G
Sbjct: 1278 FFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKG 1337
Query: 182 RDSIFVVVDRFSKMAHFIPCHKTDDASHVADLFFREIVRLHGMPRTIISDRDAKFLSYFW 3
RDSIFVVVDRFSKMAHFIPCHK+DDA++VADLFFREI+RLHG+P TI+SDRDAKFLS+FW
Sbjct: 1338 RDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFW 1397