BLASTX nr result

ID: Rauwolfia21_contig00034669 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00034669
         (365 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABL63121.1| AT-hook DNA-binding protein [Catharanthus roseus]       57   3e-06
ref|XP_002319649.1| DNA-binding family protein [Populus trichoca...    56   4e-06
ref|XP_004302076.1| PREDICTED: putative DNA-binding protein ESCA...    55   1e-05
gb|ADY38789.1| DNA-binding protein [Coffea arabica]                    55   1e-05

>gb|ABL63121.1| AT-hook DNA-binding protein [Catharanthus roseus]
          Length = 302

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 40/89 (44%), Positives = 40/89 (44%)
 Frame = +1

Query: 37  LVASGPVMVIAATFTNATYXXXXXXXXXXXXXXXXXQPXXXXXXXXXXXXXXXXXXXXXM 216
           LVASGPVMVIAATFTNATY                                        M
Sbjct: 213 LVASGPVMVIAATFTNATYERLPLEEEATATATDAAAEGGGGGTSGAASQSHG------M 266

Query: 217 ADPASSVPLYSLPPNLVPNGQMPHEVFWT 303
           AD   S   YSLPPNLVPNGQ   EVFWT
Sbjct: 267 ADDPVSPNFYSLPPNLVPNGQ---EVFWT 292


>ref|XP_002319649.1| DNA-binding family protein [Populus trichocarpa]
           gi|222858025|gb|EEE95572.1| DNA-binding family protein
           [Populus trichocarpa]
          Length = 284

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 36/85 (42%), Positives = 42/85 (49%)
 Frame = +1

Query: 37  LVASGPVMVIAATFTNATYXXXXXXXXXXXXXXXXXQPXXXXXXXXXXXXXXXXXXXXXM 216
           LVASGPVMVIAATF+NATY                 Q                      M
Sbjct: 198 LVASGPVMVIAATFSNATYERLPLEDEEEGSGGAQGQ--------LGGGNGSGEGNGGGM 249

Query: 217 ADPASSVPLYSLPPNLVPNGQMPHE 291
            DPA+S+P+Y LP N+VPNGQ+ HE
Sbjct: 250 GDPATSMPVYQLP-NMVPNGQLNHE 273


>ref|XP_004302076.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Fragaria
           vesca subsp. vesca]
          Length = 306

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 37/91 (40%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
 Frame = +1

Query: 37  LVASGPVMVIAATFTNATYXXXXXXXXXXXXXXXXXQPXXXXXXXXXXXXXXXXXXXXXM 216
           LVASGPVMVIAATF+NATY                 QP                     +
Sbjct: 210 LVASGPVMVIAATFSNATY------ERLPLDQEEDDQPPAPNSGQPGGGGSSPPGIGGSL 263

Query: 217 ADPASSVP--LYSLPPNLVPN--GQMPHEVF 297
            DP SS+P  +Y+LPP+LVPN  GQ+ HE +
Sbjct: 264 GDPNSSMPPGVYNLPPSLVPNGGGQLSHEAY 294


>gb|ADY38789.1| DNA-binding protein [Coffea arabica]
          Length = 289

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 37/88 (42%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +1

Query: 37  LVASGPVMVIAATFTNATYXXXXXXXXXXXXXXXXXQPXXXXXXXXXXXXXXXXXXXXXM 216
           LVASGPVMVIA+TF+NATY                 Q                      +
Sbjct: 197 LVASGPVMVIASTFSNATYERLPIEEDEEGGGAAQGQ---LGGNGSPPLGSGGAPQQGGL 253

Query: 217 ADPASSVPLYSLPPNLVPN-GQMPHEVF 297
            DP SS+P+YSLPPNL+PN GQ+ HE F
Sbjct: 254 GDP-SSMPVYSLPPNLMPNGGQLNHEAF 280


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