BLASTX nr result

ID: Rauwolfia21_contig00033788 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00033788
         (420 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006367245.1| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10
ref|XP_004250470.1| PREDICTED: pentatricopeptide repeat-containi...    59   5e-07

>ref|XP_006367245.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Solanum tuberosum]
          Length = 944

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 47/97 (48%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
 Frame = +2

Query: 77  IFSLSSTAHYSHAPPPPFSASVLAVKHHVTSATSISSLKYXXXXXXXXXXA-GPRRPTSH 253
           IFSLSSTAHYS + PPPF+ S+LA KHH  S+TSI SLK           +   RRPT++
Sbjct: 19  IFSLSSTAHYSPS-PPPFTTSILAGKHH-PSSTSILSLKSSSDYPEKPTTSTSLRRPTTN 76

Query: 254 KPLKASS-SDYSKYPGNPLKNLINSQTTPPVSAPPPN 361
           KP   ++ S   ++  NPLK L+NS   PP ++PPP+
Sbjct: 77  KPPDTTTHSQNLEFSKNPLKLLLNS---PPNTSPPPS 110


>ref|XP_004250470.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Solanum lycopersicum]
          Length = 932

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
 Frame = +2

Query: 77  IFSLSSTAHYSHAPPPPFSASVLAVKHHVTSATSISSLKYXXXXXXXXXXAGPRRPTSHK 256
           IFSLSSTAHYS + PPPF+ S+LA KHH ++   +                  RRPT++K
Sbjct: 5   IFSLSSTAHYSPS-PPPFATSILAGKHHPSTTCILFLKSSSDSPEKPTTSTSLRRPTTNK 63

Query: 257 PLKASS-SDYSKYPGNPLKNLINSQTTPPVSAPPP 358
           P   ++ S    +  NPLK L++S   PP ++ PP
Sbjct: 64  PPDITTHSQNLAFSKNPLKLLLSS---PPNTSSPP 95


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