BLASTX nr result
ID: Rauwolfia21_contig00033631
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00033631
(1290 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 656 0.0
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 628 e-177
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 489 e-135
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 479 e-132
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 479 e-132
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 476 e-132
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 476 e-131
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 460 e-127
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 457 e-126
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 456 e-126
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 456 e-125
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 455 e-125
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 453 e-125
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 452 e-124
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 452 e-124
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 441 e-121
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 441 e-121
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 434 e-119
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc... 419 e-114
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 418 e-114
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 656 bits (1692), Expect = 0.0
Identities = 319/433 (73%), Positives = 369/433 (85%), Gaps = 4/433 (0%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
KF+ G HT+ G+LEYIHSDLWGPSPVES GCRY+VTFIDD+SRKVW+YFLK+KDEVFG+
Sbjct: 579 KFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGK 638
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FKEWKTMVEKRTGK VKTLRTDNGLEFCN FDEFC+KEGIVRHRTVRHTPQQNGVAERM
Sbjct: 639 FKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERM 698
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
NQTL+QRARCMR+ A LSK+FWAEAV+TA YLVNRSPSTAIDFKTPQEVWSG S+YSGL
Sbjct: 699 NQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGL 758
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
+IFGCPAYAHV+DGKLE RAM+CIFLGYATGVKGYRLWCTE +RTPK IISRDVTFDESA
Sbjct: 759 KIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTE-DRTPKFIISRDVTFDESA 817
Query: 568 MFGQREELGNLAG---KDQGANQMVELEVETPKQM-AKDSIEQSKNSQDFDSQSIAARRE 401
MFGQR+E G+LAG D GANQ VE EV+ P + D+ E+ DSQSIAA R
Sbjct: 818 MFGQRKEFGDLAGTSKTDLGANQKVEFEVDAPMENGVDDTSEEQPVIDQNDSQSIAAHRP 877
Query: 400 KRIIQKPQRYVDCVSVADTNSVAYALAVAESIDADDPQSYKEAVQSKEAADWLIAMHEEM 221
+R I++P RYVDCVS TN VA+ALAVAE I ++P+SYKEA++SK++ WL +M +EM
Sbjct: 878 RREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDDEM 937
Query: 220 QSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKASLVAKGFSQNEGIDFHK 41
SL KN+T +LVPLP+GVKPV CKW+F+ K+GI EP ++K+ LVAKGFSQ EGID+++
Sbjct: 938 ASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXDEPPKYKSRLVAKGFSQKEGIDYNE 997
Query: 40 VFSPVVKHKSIRI 2
VFSPVVKHKSIR+
Sbjct: 998 VFSPVVKHKSIRV 1010
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 628 bits (1620), Expect = e-177
Identities = 311/433 (71%), Positives = 358/433 (82%), Gaps = 4/433 (0%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
KF+ G HT+ G+LEYIHSDLWGPSPVES GCRY+VTFIDD+SRKVW+YFLK+KDEVFG+
Sbjct: 792 KFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGK 851
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FKEWKTMVEKRTGK VKTLRTDNGLEFCN FDEFC+KEGIVRHRTVRHTPQQNGVAERM
Sbjct: 852 FKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERM 911
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
NQTL+QRARCMR+ A LSK+FWAEAV+TA YLVNRSPSTAIDFKTPQEVWSG S+YSGL
Sbjct: 912 NQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGL 971
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
+IFGCPAYAHV+DGKLE RAM+CIFLGYATGVKGYRLWCTE +RTPK IISRDVTFDESA
Sbjct: 972 KIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTE-DRTPKFIISRDVTFDESA 1030
Query: 568 MFGQREELGNLAG---KDQGANQMVELEVETPKQM-AKDSIEQSKNSQDFDSQSIAARRE 401
MFGQR+E G+LAG D GANQ VE EV+ P + D+ E+ DSQSIAA R
Sbjct: 1031 MFGQRKEFGDLAGTSKTDLGANQKVEFEVDAPMENGVDDTSEEQPVIDQNDSQSIAAXRP 1090
Query: 400 KRIIQKPQRYVDCVSVADTNSVAYALAVAESIDADDPQSYKEAVQSKEAADWLIAMHEEM 221
+R I++P RYVDCVS TN VA+ALAVAE I ++P+SYKEA++SK++ WL +M +EM
Sbjct: 1091 RREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDDEM 1150
Query: 220 QSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKASLVAKGFSQNEGIDFHK 41
SL KN+T +LVPLP+GVKPV CKW+F+ K+GI EP ++K+ LVA K
Sbjct: 1151 ASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISEDEPPKYKSRLVA------------K 1198
Query: 40 VFSPVVKHKSIRI 2
VFSPVVKHKSIR+
Sbjct: 1199 VFSPVVKHKSIRV 1211
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 489 bits (1259), Expect = e-135
Identities = 248/440 (56%), Positives = 313/440 (71%), Gaps = 12/440 (2%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
KFNT HT+ GIL+Y+HSDLWGP+ S GG RY +T +DDYSRKVW YFLK K + F
Sbjct: 687 KFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDV 746
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FKEWKTMVE++T ++VK LRTDNG+EFC+ F +CK EGIVRH TV HTPQQNGVAERM
Sbjct: 747 FKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERM 806
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
N+T++ +ARC+ +A L KQFWAEAVSTACYL+NRSPS AID KTP EVWSGS ++YS L
Sbjct: 807 NRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDL 866
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
R+FGC AYAHV++GKLE RA++CIFLGY +GVKGY+LWC E T K++ISR+V F ES
Sbjct: 867 RVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPE---TKKVVISRNVVFHESV 923
Query: 568 MFGQREELGNLAGKDQGANQMVELEVETPKQMAKDS---------IEQSKNS--QDFDSQ 422
M + + A+ VE + + K+ IE S +S Q +
Sbjct: 924 MLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDEPVIEDSNSSIVQQSPKR 983
Query: 421 SIAARREKRIIQKPQRYVDCVSVADTNSVAYALAVAESIDAD-DPQSYKEAVQSKEAADW 245
SIA R KR I+ PQRY++ + N VAYAL+VAE I+ + +P +Y EA+ S + W
Sbjct: 984 SIAKDRPKRNIKPPQRYIE-----EANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRW 1038
Query: 244 LIAMHEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKASLVAKGFSQ 65
+ AMH+EM+SL KN T +LV LPK KP+ CKW+F++KEGI + AR+KA L+AKG+SQ
Sbjct: 1039 ITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQ 1098
Query: 64 NEGIDFHKVFSPVVKHKSIR 5
GIDF+ VFSPVVKH SIR
Sbjct: 1099 IPGIDFNDVFSPVVKHSSIR 1118
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 479 bits (1232), Expect = e-132
Identities = 241/440 (54%), Positives = 309/440 (70%), Gaps = 12/440 (2%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
KFNT HT+ GIL+Y+HSDLWGP+ S GG RY +T +DDYSRKVW YFLK K + F
Sbjct: 515 KFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDV 574
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FKEWKTMVE++T K+VK LRTDNG+EFC+ F +CK EGIV H TV HTPQQNGVAERM
Sbjct: 575 FKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERM 634
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
N ++ +ARCM +ADL KQFWAEAVST CYL+NRSPS A D KTP EVWSGS ++YS L
Sbjct: 635 NMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDL 694
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
R+FGC AYAHV++GKLE RA++CIFLGY +GVKGY+LWC E T K++ISR+V F ES
Sbjct: 695 RVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPE---TKKVVISRNVVFHESV 751
Query: 568 MFGQREELGNLAGKDQGANQMVELEVETPKQMAKDS---------IEQSKNS--QDFDSQ 422
+ + + A+ VE + + K++ IE S +S Q +
Sbjct: 752 ILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKR 811
Query: 421 SIAARREKRIIQKPQRYVDCVSVADTNSVAYALAVAESIDAD-DPQSYKEAVQSKEAADW 245
SIA + KR I+ P+RY++ + N VAYAL+VAE I+ + +P +Y EA+ S + W
Sbjct: 812 SIAKDKPKRNIKPPRRYIE-----EANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRW 866
Query: 244 LIAMHEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKASLVAKGFSQ 65
+ AMH+EM+SL KN T + V LPK KP+ CKW+F++KEG+ + AR+KA LVAKG+SQ
Sbjct: 867 ITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQ 926
Query: 64 NEGIDFHKVFSPVVKHKSIR 5
GIDF+ VFSP++KH SIR
Sbjct: 927 IPGIDFNDVFSPIMKHSSIR 946
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 479 bits (1232), Expect = e-132
Identities = 241/440 (54%), Positives = 309/440 (70%), Gaps = 12/440 (2%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
KFNT HT+ GIL+Y+HSDLWGP+ S GG RY +T +DDYSRKVW YFLK K + F
Sbjct: 515 KFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDV 574
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FKEWKTMVE++T K+VK LRTDNG+EFC+ F +CK EGIV H TV HTPQQNGVAERM
Sbjct: 575 FKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERM 634
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
N ++ +ARCM +ADL KQFWAEAVST CYL+NRSPS A D KTP EVWSGS ++YS L
Sbjct: 635 NMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDL 694
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
R+FGC AYAHV++GKLE RA++CIFLGY +GVKGY+LWC E T K++ISR+V F ES
Sbjct: 695 RVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPE---TKKVVISRNVVFHESV 751
Query: 568 MFGQREELGNLAGKDQGANQMVELEVETPKQMAKDS---------IEQSKNS--QDFDSQ 422
+ + + A+ VE + + K++ IE S +S Q +
Sbjct: 752 ILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKR 811
Query: 421 SIAARREKRIIQKPQRYVDCVSVADTNSVAYALAVAESIDAD-DPQSYKEAVQSKEAADW 245
SIA + KR I+ P+RY++ + N VAYAL+VAE I+ + +P +Y EA+ S + W
Sbjct: 812 SIAKDKPKRNIKPPRRYIE-----EANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRW 866
Query: 244 LIAMHEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKASLVAKGFSQ 65
+ AMH+EM+SL KN T + V LPK KP+ CKW+F++KEG+ + AR+KA LVAKG+SQ
Sbjct: 867 ITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQ 926
Query: 64 NEGIDFHKVFSPVVKHKSIR 5
GIDF+ VFSP++KH SIR
Sbjct: 927 IPGIDFNDVFSPIMKHSSIR 946
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 476 bits (1226), Expect = e-132
Identities = 240/440 (54%), Positives = 312/440 (70%), Gaps = 12/440 (2%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
KFNT HT+ GIL+Y+HSDLWGP+ S GG RY +T +DDYSRKVW YFLK K + F
Sbjct: 452 KFNTSTHTTEGILDYVHSDLWGPAHKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDG 511
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FKEWKTMVE++T ++VK LRTDNG+EFC+ F +CK EGIV H T HTPQQN VAERM
Sbjct: 512 FKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVCHYTAPHTPQQNDVAERM 571
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
N+T++ +ARCM +A L KQFWAEAVSTACYL+NRSP AID KTP EVWSGS ++YS L
Sbjct: 572 NRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDL 631
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
R+FGC AYAHV++GKLE RA++CIFLGYA+GVKGY+LWC E T K++ISR+V F ES
Sbjct: 632 RVFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPE---TKKVVISRNVVFHESV 688
Query: 568 MFGQREELGNLAGKDQGANQMVELEVETPKQMAKDSIEQSKNS---QDFDS--------Q 422
+ + + A+ VE + + K+ + ++++ +D DS +
Sbjct: 689 ILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVHQSPKR 748
Query: 421 SIAARREKRIIQKPQRYVDCVSVADTNSVAYALAVAESIDAD-DPQSYKEAVQSKEAADW 245
SIA + KR I+ P+RY++ + VAYAL+VAE I+ + +P +Y EA+ S + W
Sbjct: 749 SIAKDKPKRNIKPPRRYIE-----EAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRW 803
Query: 244 LIAMHEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKASLVAKGFSQ 65
+ AMH+EM+SL KN T +LV LPK KP+ CKW+F++KEG+ + AR+KA LVAKG+SQ
Sbjct: 804 ITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQ 863
Query: 64 NEGIDFHKVFSPVVKHKSIR 5
GIDF+ VFSPVVKH SIR
Sbjct: 864 IPGIDFNDVFSPVVKHSSIR 883
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 476 bits (1224), Expect = e-131
Identities = 241/440 (54%), Positives = 308/440 (70%), Gaps = 12/440 (2%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
KFNT HT+ GIL+Y+HSDLWGP+ S GG RY +T +DDYSRKVW YFLK K + F
Sbjct: 389 KFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDV 448
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FKEWKTMVE++T ++VK LRTDNG+E C+ F +CK EGIVRH TV HTPQQNGVAERM
Sbjct: 449 FKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERM 508
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
N+T++ +ARCM +A L KQFWAEAVSTACYL+NRSPS AID KTP EVWSGS ++YS L
Sbjct: 509 NRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDL 568
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
R+FGC AYAHV++GKLE R ++CIFLGY +GVKGY+LWC E T K++ISR+V F ES
Sbjct: 569 RVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPE---TKKVVISRNVVFHESI 625
Query: 568 MFGQREELGNLAGKDQGANQMVELEVETPKQMAKDS---------IEQSKNS--QDFDSQ 422
M + + + VE + + K+ IE S +S Q +
Sbjct: 626 MLHDKPSTNVPVESQEKVSVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSPKR 685
Query: 421 SIAARREKRIIQKPQRYVDCVSVADTNSVAYALAVAESIDAD-DPQSYKEAVQSKEAADW 245
SIA R KR + P+RY++ + N VAYAL+VAE I+ + +P +Y +A+ S + W
Sbjct: 686 SIAKDRPKRNTKPPRRYIE-----EANIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRW 740
Query: 244 LIAMHEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKASLVAKGFSQ 65
+ AMH+EM+SL KN + +L LPK KP+ CKW+F++KEG+ + AR+KA LVAKG+SQ
Sbjct: 741 ITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQ 800
Query: 64 NEGIDFHKVFSPVVKHKSIR 5
GIDF+ VFSPVVKH SIR
Sbjct: 801 IPGIDFNDVFSPVVKHSSIR 820
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 460 bits (1184), Expect = e-127
Identities = 231/437 (52%), Positives = 297/437 (67%), Gaps = 9/437 (2%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
KFNT H + GIL+Y+H+DLWGPS SLGG RY +T IDDYSRKVW YFLK KD+ F
Sbjct: 473 KFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAA 532
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FKEWK M+E++T K+VK LRTDN EFC+ FD++C+KEGIVRH T+ +TPQQNGVAERM
Sbjct: 533 FKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERM 592
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
N+T++ +ARCM +A ++K+FWAEA +TACYL+NRSPS ++ KTP E+WSG +DYS L
Sbjct: 593 NRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQL 652
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
R+FGC AYAHV++ KLE RA++C+FLGY GVKGY+LW E N+T +SR V F+ES
Sbjct: 653 RVFGCTAYAHVDNEKLEPRAIKCLFLGYGLGVKGYKLWNPETNKT---FMSRSVVFNESV 709
Query: 568 MFGQREELGNLAGKDQGANQMVELEVETPKQM--------AKDSIEQSKNSQDFDSQSIA 413
MF + G Q V ++VE D+++ S + IA
Sbjct: 710 MFNDSLPTDVIPGGSDEEQQYVSVQVEHVDDQETEIVGNDVNDTVQHSPPVLQPQDEPIA 769
Query: 412 ARREKRIIQKPQRYVDCVSVADTNSVAYALAVAESIDAD-DPQSYKEAVQSKEAADWLIA 236
RR KR P R ++ + + V YA + AE ++ +P +Y EAV S + W+ A
Sbjct: 770 HRRTKRSCGAPVRLIE-----ECDMVYYAFSCAEQVENTLEPATYTEAVVSGDREKWISA 824
Query: 235 MHEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKASLVAKGFSQNEG 56
M EEMQSL KN T +LV LPK KPV CKW+F++KEG+ EP RFKA LVAKGFSQ G
Sbjct: 825 MQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKARLVAKGFSQIVG 884
Query: 55 IDFHKVFSPVVKHKSIR 5
+D++ VFSPVVKH SIR
Sbjct: 885 VDYNDVFSPVVKHSSIR 901
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 457 bits (1176), Expect = e-126
Identities = 226/449 (50%), Positives = 310/449 (69%), Gaps = 21/449 (4%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
+FNT HT+ G L+Y+H+DLWGPS SLGG RY +T IDDYSRKVW YFLK KD+ F
Sbjct: 472 QFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTA 531
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FK WK M+E++T ++VK LRTDNG EFC+ F+++C++EGIVRH T+ HTPQQNGVAERM
Sbjct: 532 FKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERM 591
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
N+T++ RARCM A ++K+FWAEA STACYL+NRSPS ++ KTP EVWSG+ +DYS L
Sbjct: 592 NRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQL 651
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
++FGC AYAHV++GKLE RA++C+FLGY +GVKGY+LW E T K +SR V F+ES
Sbjct: 652 KVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPE---TGKTFMSRSVVFNESV 708
Query: 568 MFGQ--------REELGNLAGKDQGANQMVELEVETPKQM-----------AKDSIEQSK 446
MF +EL + + + + ++VE + A D ++Q+
Sbjct: 709 MFTNSLPSEHVPEKELQRMHMQVEHVDDYTGVQVEPVHEQDDHNNDVADDDAHDDVQQTP 768
Query: 445 NSQDFDSQ-SIAARREKRIIQKPQRYVDCVSVADTNSVAYALAVAESID-ADDPQSYKEA 272
+ + IA R+ KR + P+R ++ + N YAL+ AE ++ +P +YKEA
Sbjct: 769 PILQLEEELPIAQRKSKRTTKPPKRLIE-----ECNLSYYALSCAEQVENVHEPATYKEA 823
Query: 271 VQSKEAADWLIAMHEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKA 92
V+ ++ +W+ AMHEEMQSL KN T ++VPLPK K + CKW+F++KEG+ EP ++KA
Sbjct: 824 VRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKA 883
Query: 91 SLVAKGFSQNEGIDFHKVFSPVVKHKSIR 5
LVA+G+SQ G+D++ VFSPVVKH SIR
Sbjct: 884 RLVARGYSQIPGVDYNDVFSPVVKHSSIR 912
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 456 bits (1174), Expect = e-126
Identities = 226/449 (50%), Positives = 310/449 (69%), Gaps = 21/449 (4%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
+FNT HT+ G L+Y+H+DLWGPS SLGG RY +T IDDYSRKVW YFLK KD+ F
Sbjct: 472 QFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTA 531
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FK WK M+E++T ++VK LRTDNG EFC+ F+++C++EGIVRH T+ HTPQQNGVAERM
Sbjct: 532 FKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERM 591
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
N+T++ RARCM A ++K+FWAEA STACYL+NRSPS ++ KTP EVWSG+ +DYS L
Sbjct: 592 NRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQL 651
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
++FGC AYAHV++GKLE RA++C+FLGY +GVKGY+LW E T K +SR V F+ES
Sbjct: 652 KVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPE---TGKTFMSRSVVFNESV 708
Query: 568 MFGQ--------REELGNLAGKDQGANQMVELEVETPKQM-----------AKDSIEQSK 446
MF +EL + + + + ++VE + A D ++Q+
Sbjct: 709 MFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTP 768
Query: 445 NSQDFDSQ-SIAARREKRIIQKPQRYVDCVSVADTNSVAYALAVAESID-ADDPQSYKEA 272
+ + IA R+ KR + P+R ++ + N YAL+ AE ++ +P +YKEA
Sbjct: 769 PILQLEEELPIAQRKSKRTTKPPKRLIE-----ECNLSYYALSCAEQVENVHEPATYKEA 823
Query: 271 VQSKEAADWLIAMHEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKA 92
V+ ++ +W+ AMHEEMQSL KN T ++VPLPK K + CKW+F++KEG+ EP ++KA
Sbjct: 824 VRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKA 883
Query: 91 SLVAKGFSQNEGIDFHKVFSPVVKHKSIR 5
LVA+G+SQ G+D++ VFSPVVKH SIR
Sbjct: 884 RLVARGYSQIPGVDYNDVFSPVVKHSSIR 912
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 456 bits (1172), Expect = e-125
Identities = 230/441 (52%), Positives = 301/441 (68%), Gaps = 12/441 (2%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
KF H + G L+YIHSD WGP VESLGGCR+FV+ IDDYSR W+Y +K K E F +
Sbjct: 458 KFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQK 517
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FKEWK ++E +TGK++K LRTDNGLEFC + FD+FCK EGI RHRTVR+TPQQNGVAERM
Sbjct: 518 FKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERM 577
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
NQTLL+RARCM +A L ++FWAEAVSTACYL+NR P T I KTP E+WSG ++DYS L
Sbjct: 578 NQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNL 637
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
+ FGC AY HV++GKLE RA + +F+GY GVKG+R+W + R +I+SR+V FDES
Sbjct: 638 KAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKR---VIMSRNVVFDESP 694
Query: 568 MF------GQREELGNLAGK-----DQGANQMVELEVETPKQMAKDSIEQSKNSQDFDSQ 422
+ E G+L + Q + + E E E + + I +S S Q
Sbjct: 695 LLRTIVKPTTTSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSD--IHQ 752
Query: 421 SIAARREKRI-IQKPQRYVDCVSVADTNSVAYALAVAESIDADDPQSYKEAVQSKEAADW 245
SIA R +R+ ++ P RY + V YAL VAE +D +P +YKEA+ S ++ W
Sbjct: 753 SIAQDRPRRVGVRPPTRY------GFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKW 806
Query: 244 LIAMHEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKASLVAKGFSQ 65
AM +EM+SL KN+T DLV P G K + CKWVF+KKEGI E ++KA +VA+GF+Q
Sbjct: 807 FAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQ 866
Query: 64 NEGIDFHKVFSPVVKHKSIRI 2
EG+D++++FSPVV+H SIR+
Sbjct: 867 REGVDYNEIFSPVVRHTSIRV 887
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 455 bits (1171), Expect = e-125
Identities = 226/449 (50%), Positives = 309/449 (68%), Gaps = 21/449 (4%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
+FNT HT+ G L+Y+H+DLWGPS SLGG RY +T IDDYSRKVW YFLK KD+ F
Sbjct: 472 QFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDDTFTA 531
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FK WK M+E++T ++VK LRTDNG EFC+ F+++C++EGIVRH T+ HTPQQNGVAERM
Sbjct: 532 FKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERM 591
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
N+T++ RARCM A ++K+FWAEA STACYL+NRSPS ++ KTP EVWSG +DYS L
Sbjct: 592 NRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPADYSQL 651
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
++FGC AYAHV++GKLE RA++C+FLGY +GVKGY+LW E T K +SR V F+ES
Sbjct: 652 KVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPE---TGKTFMSRSVVFNESV 708
Query: 568 MFGQ--------REELGNLAGKDQGANQMVELEVETPKQM-----------AKDSIEQSK 446
MF +EL + + + + ++VE + A D ++Q+
Sbjct: 709 MFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTP 768
Query: 445 NSQDFDSQ-SIAARREKRIIQKPQRYVDCVSVADTNSVAYALAVAESID-ADDPQSYKEA 272
+ + IA R+ KR + P+R ++ + N YAL+ AE ++ +P +YKEA
Sbjct: 769 PILQLEEELPIAQRKSKRTTKPPKRLIE-----ECNLSYYALSCAEQVENVHEPATYKEA 823
Query: 271 VQSKEAADWLIAMHEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKA 92
V+ ++ +W+ AMHEEMQSL KN T ++VPLPK K + CKW+F++KEG+ EP ++KA
Sbjct: 824 VRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKA 883
Query: 91 SLVAKGFSQNEGIDFHKVFSPVVKHKSIR 5
LVA+G+SQ G+D++ VFSPVVKH SIR
Sbjct: 884 RLVARGYSQIPGVDYNDVFSPVVKHSSIR 912
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 453 bits (1166), Expect = e-125
Identities = 225/449 (50%), Positives = 309/449 (68%), Gaps = 21/449 (4%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
+FNT HT+ G L+Y+H+DLWGPS SLGG RY +T IDDYSRKVW YFLK KD+ F
Sbjct: 474 QFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTA 533
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FK WK M+E++T ++VK L TDNG EFC+ F+++C++EGIVRH T+ HTPQQNGVAERM
Sbjct: 534 FKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERM 593
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
N+T++ RARCM A ++K+FWAEA STACYL+NRSPS ++ KTP EVWSG+ +DYS L
Sbjct: 594 NRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQL 653
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
++FGC AYAHV++GKLE RA++C+FLGY +GVKGY+LW E T K +SR V F+ES
Sbjct: 654 KVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPE---TGKTFMSRSVVFNESV 710
Query: 568 MFGQ--------REELGNLAGKDQGANQMVELEVETPKQM-----------AKDSIEQSK 446
MF +EL + + + + ++VE + A D ++Q+
Sbjct: 711 MFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVDEQDDHNNDVADDDAHDDVQQTP 770
Query: 445 NSQDFDSQ-SIAARREKRIIQKPQRYVDCVSVADTNSVAYALAVAESID-ADDPQSYKEA 272
+ SIA R+ KR + P+R ++ + N YAL+ AE ++ +P +YKEA
Sbjct: 771 PILQLEEDLSIAQRKSKRTTKPPKRLIE-----ECNLSYYALSCAEQVENVHEPATYKEA 825
Query: 271 VQSKEAADWLIAMHEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKA 92
V+ ++ +W+ AMHEEMQSL KN T ++VPLPK K + CKW+F++KE + + EP ++KA
Sbjct: 826 VRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKA 885
Query: 91 SLVAKGFSQNEGIDFHKVFSPVVKHKSIR 5
LVA+G+SQ G+D++ VFSPVVKH SIR
Sbjct: 886 RLVARGYSQIPGVDYNDVFSPVVKHSSIR 914
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 452 bits (1163), Expect = e-124
Identities = 232/437 (53%), Positives = 300/437 (68%), Gaps = 8/437 (1%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
KF H + L+YIHSDLWGPS V S+GG RYF+T IDDYSRKVWIYFLK+K E F +
Sbjct: 438 KFAKAIHETQNQLDYIHSDLWGPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLK 497
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FKEWK +VE +T ++VK LRTDNGLEF + F+ C+KEGI RHRTVR+TPQQNG+AERM
Sbjct: 498 FKEWKILVETQTSRKVKKLRTDNGLEFLSNDFNSLCQKEGIARHRTVRYTPQQNGLAERM 557
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
N+T+L+R RCM S+ LSK FWAEA TA +L+NRSPS+A+ FKTPQE W+G ++DY L
Sbjct: 558 NRTILERVRCMLSSSGLSKVFWAEAAETAVHLINRSPSSALQFKTPQEKWTGKAADYQHL 617
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
++FGC AY H KLE RA++CIFLGY GVKGY+LW E K IISRDVTF+E
Sbjct: 618 KVFGCTAYVHTKTDKLEPRAVKCIFLGYPKGVKGYKLW-IETQGKGKCIISRDVTFNEQD 676
Query: 568 MFGQR-----EELGNLAGKDQGANQMVELEVETPKQMAKDSI---EQSKNSQDFDSQSIA 413
M Q E L L + + E ET + A++ I Q++ +Q +S ++
Sbjct: 677 MSKQTPAKDVEGLDQLQFEVEHETLQPEKSKETSSKTAQEEIVHERQNEPTQGLESYNLV 736
Query: 412 ARREKRIIQKPQRYVDCVSVADTNSVAYALAVAESIDADDPQSYKEAVQSKEAADWLIAM 233
R+KR ++ P+RY A+AL+VAE I +P++Y+EA+ S EA W+ A+
Sbjct: 737 RDRQKRQVKPPKRY------GQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKAI 790
Query: 232 HEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKASLVAKGFSQNEGI 53
EEM SL KN+T +LV PK K VG KWVF++K+G E R+KA LVAKGFSQ EG+
Sbjct: 791 QEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGV 850
Query: 52 DFHKVFSPVVKHKSIRI 2
D++++FSPVVKH SIR+
Sbjct: 851 DYNEIFSPVVKHSSIRL 867
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 452 bits (1162), Expect = e-124
Identities = 227/437 (51%), Positives = 297/437 (67%), Gaps = 9/437 (2%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
KFNT H + GIL+Y+H+DLWGPS SLGG RY +T IDDYSRK W YFLK KD+ F
Sbjct: 473 KFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDTFAA 532
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FKE K M+E++T K+VK L TDNG EFC+ FD++C+KEGIVRH T+ +TPQQNGVAERM
Sbjct: 533 FKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERM 592
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
N+T++ +ARCM +A ++K+FWAEA +TACYL+NRSPS ++ KTP E+WSG +DYS L
Sbjct: 593 NRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQL 652
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
R+FGC AYAHV++GKLE RA++C+FLGY +GVKGY+LW E N+T +SR+V F+E
Sbjct: 653 RVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLWNPETNKT---FMSRNVIFNEFV 709
Query: 568 MFGQREELGNLAGKDQGANQMVELEVETPKQM--------AKDSIEQSKNSQDFDSQSIA 413
MF + G Q V ++VE D+++ S + + IA
Sbjct: 710 MFNDSLPTDVIPGGSDEEQQYVSVQVEHVDDQETEIVGNDVNDTVQHSPSVLQPQDEPIA 769
Query: 412 ARREKRIIQKPQRYVDCVSVADTNSVAYALAVAESIDAD-DPQSYKEAVQSKEAADWLIA 236
RR KR P R ++ + + V YA + AE ++ +P +Y EAV S + W+ A
Sbjct: 770 HRRTKRSCGAPVRLIE-----ECDMVYYAFSYAEQVENTLEPATYTEAVVSGDREKWISA 824
Query: 235 MHEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKASLVAKGFSQNEG 56
+ EEMQSL KN T +LV LPK KPV CKW+F++KEG+ EP RFK LVAKGFSQ G
Sbjct: 825 IQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIAG 884
Query: 55 IDFHKVFSPVVKHKSIR 5
+D++ VFSPVVKH SIR
Sbjct: 885 VDYNDVFSPVVKHSSIR 901
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 441 bits (1135), Expect = e-121
Identities = 216/450 (48%), Positives = 304/450 (67%), Gaps = 21/450 (4%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
KFN G+H S +L+Y H D WGP+ V SL G RYF++ IDDYSRKVWIY LK KD+ +
Sbjct: 470 KFNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQALEK 529
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FK WK++VE ++ ++K LRTDNGLEFC+ F+E+C+K GI RH+TVR TPQQNG+AERM
Sbjct: 530 FKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAERM 589
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
N+TL+ + RCM +++ L + FWAEAV+TA YLVNRSPS+AI FKTP+E+W+G ++Y L
Sbjct: 590 NRTLVDKTRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGKPANYQNL 649
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
R+FGCPAY H+N GKLEARA++ +F+GY GVKGY++WC ++ K I+SRDV F ES
Sbjct: 650 RVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQG---KCIVSRDVVFHESV 706
Query: 568 MFGQREE-----LGNLAGKDQGANQMVELEVE------TPKQMAKDSIEQSKNSQ----- 437
+ + E N A + ++ ++ VE + K+ A D + S+
Sbjct: 707 LLKESAEHDAGLQDNPAANKRSGSETSKVNVELLTDKSSEKEAASDDERATAESEEHEVS 766
Query: 436 -----DFDSQSIAARREKRIIQKPQRYVDCVSVADTNSVAYALAVAESIDADDPQSYKEA 272
D + +A R +R ++ P RY AD +AYAL A+ + ++P ++ EA
Sbjct: 767 ELPQADLQNYQLARDRVRREVRAPVRY----GYADL--IAYALLCADEVTIEEPANFSEA 820
Query: 271 VQSKEAADWLIAMHEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKA 92
++S WL AM +EM+SL +N+T L+P P + + CKW+F++ EGIP VEP ++KA
Sbjct: 821 MESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKA 880
Query: 91 SLVAKGFSQNEGIDFHKVFSPVVKHKSIRI 2
LVA+GF+Q EG+DF+++FSPVVKH SIRI
Sbjct: 881 RLVARGFTQREGVDFNEIFSPVVKHSSIRI 910
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 441 bits (1133), Expect = e-121
Identities = 222/414 (53%), Positives = 290/414 (70%), Gaps = 12/414 (2%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
KFNT HT+ GIL+Y+HSDLWGP+ S GG RY +T +DDYSRKVW YFLK K + F
Sbjct: 441 KFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDV 500
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FKEWKTMVE++T ++VK LRTDNG++FC+ F +CK EGIVRH TV HTPQQNGVAERM
Sbjct: 501 FKEWKTMVERQTERKVKILRTDNGMDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERM 560
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
N+T++ +ARCM +A L KQFWAEAVSTACYL+NRSPS AID KTP +VWSGS ++YS L
Sbjct: 561 NRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDL 620
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
R+FGC AYAHV++ KLE RA++CIFLGY +GVKGY+LWC E T K++ISR+V F ES
Sbjct: 621 RVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWCPE---TKKVVISRNVVFHESV 677
Query: 568 MFGQREELGNLAGKDQGANQMVELEVETPKQMAKDS---------IEQSKNS--QDFDSQ 422
M + + A+ VE + + K++ IE S +S Q
Sbjct: 678 MLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINLDAPVIEDSDSSIVQQSPKH 737
Query: 421 SIAARREKRIIQKPQRYVDCVSVADTNSVAYALAVAESIDAD-DPQSYKEAVQSKEAADW 245
SIA + KR I+ P+RY++ + N VAYAL+VAE I+ + +P +Y +A+ S + W
Sbjct: 738 SIAKDKPKRNIKPPRRYIE-----EANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRW 792
Query: 244 LIAMHEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKASLV 83
+ AMH+EM+SL KN T +LV LPK KP+ CKW+F++KEG+ + AR+KAS +
Sbjct: 793 ITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKASSI 846
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 434 bits (1115), Expect = e-119
Identities = 220/412 (53%), Positives = 284/412 (68%), Gaps = 12/412 (2%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
KFNT HT+ GIL+Y+HSDLWGP+ S GG RY +T IDDYSRKVW YFLK K + F
Sbjct: 301 KFNTSTHTTEGILDYVHSDLWGPTCKTSFGGARYMMTIIDDYSRKVWPYFLKHKYQAFDV 360
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FKEWKTMVE++T ++VK LR DNG+EFC+ F +CK EGIVRH TV HTPQQNGVAERM
Sbjct: 361 FKEWKTMVERQTERKVKILRPDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERM 420
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
N+T++ +ARCM +A L KQFWAEAVSTACYL+NRSPS AID KTP EVWS S + YS L
Sbjct: 421 NRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSSSPAKYSDL 480
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
R+F C AYAHV++GKLE RA++CIFLGY +GVKGY+LWC E T K++I+R+V F ES
Sbjct: 481 RVFSCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPE---TKKVVINRNVVFHESV 537
Query: 568 MFGQREELGNLAGKDQGANQMVELEVETPKQMAKDS---------IEQSKNS--QDFDSQ 422
M + + A+ VE + + K+ IE S +S Q +
Sbjct: 538 MLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSPKR 597
Query: 421 SIAARREKRIIQKPQRYVDCVSVADTNSVAYALAVAESIDAD-DPQSYKEAVQSKEAADW 245
SIA R KR + P++Y++ + N V YAL+VAE I+ + +P +Y +A+ S + W
Sbjct: 598 SIAKDRPKRNTKPPRKYIE-----EANIVTYALSVAEEIEGNTEPSTYSDAIVSDDCNRW 652
Query: 244 LIAMHEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKAS 89
+ AMH+EM+SL KN T +LV LPK KP+ CKW+F++KEG+ + AR+KAS
Sbjct: 653 ITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKAS 704
>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 419 bits (1077), Expect = e-114
Identities = 210/413 (50%), Positives = 276/413 (66%), Gaps = 9/413 (2%)
Frame = -3
Query: 1288 KFNTGKHTSTGILEYIHSDLWGPSPVESLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
KFNT H S GIL+Y+H+DLWGPS SLGG Y +T IDDYSRKVW YFLK KD+ F
Sbjct: 413 KFNTSVHRSKGILDYVHADLWGPSRKPSLGGACYMLTIIDDYSRKVWPYFLKHKDDTFAA 472
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
FKEWK M+E++T K+VK LRTD+G EFC+ FD++C+KEGIVRH T+ +TPQQNGVAERM
Sbjct: 473 FKEWKVMIERQTEKEVKVLRTDSGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERM 532
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
N+T++ RCM +A ++K+FWAE +TACYL+NRSPS ++ KTP EVWSG +DYS L
Sbjct: 533 NRTIISNTRCMLSNARMNKRFWAEVANTACYLINRSPSIPLNKKTPIEVWSGMPADYSQL 592
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
R+FGC AYAHV++GKLE RA++C+FLGY +GVKGY+LW + N+T +SR V F+ES
Sbjct: 593 RVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLWNPKTNKT---FMSRSVVFNESV 649
Query: 568 MFGQREELGNLAGKDQGANQMVELEVETPKQMAKD--------SIEQSKNSQDFDSQSIA 413
MF + G Q V ++VE + +++ S + IA
Sbjct: 650 MFNDSLPTDVILGGSDEEQQYVSVQVEHVDDQETEIVGNDVNVTVQHSPPVLQPQDEPIA 709
Query: 412 ARREKRIIQKPQRYVDCVSVADTNSVAYALAVAESIDAD-DPQSYKEAVQSKEAADWLIA 236
RR KR P R+++ + + V YA + AE ++ +P +Y EAV S + W+ A
Sbjct: 710 HRRTKRSCGAPIRFIE-----ECDMVYYAFSCAEQVENTLEPATYTEAVVSGDREKWISA 764
Query: 235 MHEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPARFKASLVAK 77
M EEMQSL KN T +LV LPK KPV CKW+F++KEG+ EP RFKAS+ K
Sbjct: 765 MQEEMQSLEKNGTWELVHLPKQKKPVHCKWIFKRKEGLSPSEPPRFKASIDVK 817
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 418 bits (1075), Expect = e-114
Identities = 207/453 (45%), Positives = 294/453 (64%), Gaps = 26/453 (5%)
Frame = -3
Query: 1285 FNTGKHTSTGILEYIHSDLWGPSPVE-SLGGCRYFVTFIDDYSRKVWIYFLKSKDEVFGR 1109
F KH + L+Y+HSDLWG + V S+G C+YF+TFIDD++R+ WIYF+++KDE F +
Sbjct: 473 FGAAKHVTKDKLDYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRRTWIYFIRTKDEAFSK 532
Query: 1108 FKEWKTMVEKRTGKQVKTLRTDNGLEFCNAPFDEFCKKEGIVRHRTVRHTPQQNGVAERM 929
F EWKT +E + K++K L TDNGLEFCN FD FC+KEG++RHRT +TPQQNGVAERM
Sbjct: 533 FVEWKTQIENQQDKKLKILITDNGLEFCNQEFDSFCRKEGVIRHRTCAYTPQQNGVAERM 592
Query: 928 NQTLLQRARCMRLSADLSKQFWAEAVSTACYLVNRSPSTAIDFKTPQEVWSGSSSDYSGL 749
N+T++ + RCM + L KQFWAEA STA +L+N+SPS++I+F P+E W+G DY L
Sbjct: 593 NRTIMNKVRCMLSESGLGKQFWAEAASTAVFLINKSPSSSIEFDIPEEKWTGHPPDYKIL 652
Query: 748 RIFGCPAYAHVNDGKLEARAMRCIFLGYATGVKGYRLWCTEKNRTPKMIISRDVTFDESA 569
+ FG AY H + GKL RA + IFLGY GVK +++W E K ++SRD+ F E+
Sbjct: 653 KKFGSVAYIHSDQGKLNPRAKKGIFLGYPDGVKRFKVWLLEDR---KCVVSRDIVFQENQ 709
Query: 568 MFGQRE-------------------ELGNLAGKD----QGANQMVELEVETPKQMAKDSI 458
M+ + + EL NL+ D +G + + + T + +KD
Sbjct: 710 MYKELQKNDMSEEDKQLTEVERTLIELKNLSADDENQSEGGDNSNQEQASTTRSASKDKQ 769
Query: 457 EQSKNSQD--FDSQSIAARREKRIIQKPQRYVDCVSVADTNSVAYALAVAESIDADDPQS 284
+ +S D ++ +A R +R I+ PQR+V+ D + V +AL + E + +P++
Sbjct: 770 VEETDSDDDCLENYLLARDRIRRQIRAPQRFVE----EDDSLVGFALTMTEDGEVYEPET 825
Query: 283 YKEAVQSKEAADWLIAMHEEMQSLAKNKTLDLVPLPKGVKPVGCKWVFRKKEGIPVVEPA 104
Y+EA++S E W A EEM S+ KN T D++ P+G + +GCKW+F++K GIP VEP
Sbjct: 826 YEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGVEPP 885
Query: 103 RFKASLVAKGFSQNEGIDFHKVFSPVVKHKSIR 5
R+KA LVAKGFSQ EGID+ ++FSPVVKH SIR
Sbjct: 886 RYKARLVAKGFSQREGIDYQEIFSPVVKHVSIR 918