BLASTX nr result
ID: Rauwolfia21_contig00032605
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00032605
(410 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006590026.1| PREDICTED: uncharacterized protein LOC102660... 83 3e-14
ref|XP_006584390.1| PREDICTED: putative ribonuclease H protein A... 78 1e-12
ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein A... 75 1e-11
ref|XP_006579213.1| PREDICTED: uncharacterized protein LOC102670... 75 1e-11
ref|XP_006586426.1| PREDICTED: putative ribonuclease H protein A... 74 2e-11
gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana] 67 3e-09
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 64 2e-08
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 64 2e-08
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 62 6e-08
ref|XP_006605183.1| PREDICTED: uncharacterized protein LOC102663... 62 1e-07
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 62 1e-07
ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcript... 62 1e-07
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana] 61 1e-07
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268... 61 2e-07
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 61 2e-07
ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664... 60 2e-07
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 60 2e-07
gb|AAD17361.1| contains similarity to reverse transcriptases: pa... 60 3e-07
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 60 3e-07
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 60 4e-07
>ref|XP_006590026.1| PREDICTED: uncharacterized protein LOC102660482 [Glycine max]
Length = 303
Score = 83.2 bits (204), Expect = 3e-14
Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 29/141 (20%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLW-----NSKTSLYAWTKVCQPK 167
+ +L+ +V+QG++ FW+ IFP P +VLDR N+ R FLW K L AW+ VC PK
Sbjct: 133 KLELIRAVIQGIVNFWIGIFPLPQSVLDRINASCRNFLWGKADIGKKKPLVAWSVVCSPK 192
Query: 168 QEGRLGLRDLAKWNLA-LRAFGTDWSRRKT---VH--------------------FLRNL 275
+EG LGL +L WNLA L D+ +K VH ++ +
Sbjct: 193 REGGLGLFNLKDWNLALLSCILWDFHCKKDSLWVHHYYFRRSDVWNYNTSSSYSVLIKKI 252
Query: 276 LQVRSIIVTREGSANAAVQRL 338
+Q+R I+++E S A +R+
Sbjct: 253 IQIRDFIISKELSTEEAKKRI 273
>ref|XP_006584390.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 316
Score = 78.2 bits (191), Expect = 1e-12
Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 32/144 (22%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLWN-----SKTSLYAWTKVCQPK 167
+ +L+ +V+QG++ FW+ IFP P +VLDR N+ FLW+ L AW VC PK
Sbjct: 166 KLELIKAVIQGIMNFWMRIFPLPQSVLDRINASCCNFLWSKADIGKNKPLVAWPVVCSPK 225
Query: 168 QEGRLGLRDLAKWNLALRAF-------GTDWSRRKTVH--------------------FL 266
QEG LGL +L WNLAL + D R + VH +
Sbjct: 226 QEGGLGLFNLKDWNLALLSHILWDFHCKKDSLRVRWVHHYYFRRSDEWNYNISSSNSVLI 285
Query: 267 RNLLQVRSIIVTREGSANAAVQRL 338
+ ++Q+R I+++E S +R+
Sbjct: 286 KKIIQIRDFIISKELSMEETKKRI 309
>ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 239
Score = 74.7 bits (182), Expect = 1e-11
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLW-----NSKTSLYAWTKVCQPK 167
+ +L+ +V+QG++ FW+ IFP +VLDR N+ FLW SL AW+ VC PK
Sbjct: 133 KLELIRAVIQGIVNFWMKIFPLSQSVLDRINASCCNFLWGKADIGKNKSLIAWSVVCSPK 192
Query: 168 QEGRLGLRDLAKWNLAL 218
+EG LGL +L WNL L
Sbjct: 193 KEGGLGLFNLKDWNLTL 209
>ref|XP_006579213.1| PREDICTED: uncharacterized protein LOC102670237 [Glycine max]
Length = 383
Score = 74.7 bits (182), Expect = 1e-11
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLWNSKTS-----LYAWTKVCQPK 167
+ +L+ +V+QG+ FW+SIFP P +VLD + R FLW L AW++VC PK
Sbjct: 121 KVELIRAVIQGIANFWMSIFPLPQSVLDTIIATCRNFLWGKADGGKIKPLVAWSEVCTPK 180
Query: 168 QEGRLGLRDLAKWNLAL 218
+EG LGL +L WN+AL
Sbjct: 181 KEGGLGLFNLKDWNIAL 197
>ref|XP_006586426.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 192
Score = 73.9 bits (180), Expect = 2e-11
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLW-----NSKTSLYAWTKVCQPK 167
+ +L+ +V+QG++ FW+ IF P +V+D N+ R FLW L AW+ VC PK
Sbjct: 90 KLELIRAVIQGIVNFWMEIFSLPQSVMDWINASCRNFLWGKADIGKNKPLVAWSVVCSPK 149
Query: 168 QEGRLGLRDLAKWNLAL 218
+EG LGL +L WNLAL
Sbjct: 150 KEGGLGLLNLKDWNLAL 166
>gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]
Length = 438
Score = 66.6 bits (161), Expect = 3e-09
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLWNSKTSLY-----AWTKVCQPK 167
R QL+SSV+ G++ FW+S F P + S +FLW+ T + +W+ VC PK
Sbjct: 74 RLQLLSSVISGIVVFWMSTFRLPKGCIREIESMCARFLWSGGTDEHHKAKVSWSTVCLPK 133
Query: 168 QEGRLGLRDLAKWNLALR------AFGTDWSRRKTVHFLRNL-LQVRSIIVTREGSANA 323
EG LG+R +WN AL F S H NL V + + +EG+ ++
Sbjct: 134 AEGGLGVRKFTEWNTALNLKLIWLLFSNSGSLWVAWHLFHNLSTSVSNFWLIKEGTTDS 192
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 64.3 bits (155), Expect = 2e-08
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLW-----NSKTSLYAWTKVCQPK 167
RTQL+SSV+ G+I FW+S F P + + S +FLW K+S +W C PK
Sbjct: 663 RTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPK 722
Query: 168 QEGRLGLRDLAKWNLAL 218
EG LG R +WN L
Sbjct: 723 SEGGLGFRSFGEWNKTL 739
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 64.3 bits (155), Expect = 2e-08
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLW-----NSKTSLYAWTKVCQPK 167
RTQL+SSV+ G+I FW+S F P + + S +FLW K+S +W C PK
Sbjct: 663 RTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPK 722
Query: 168 QEGRLGLRDLAKWNLAL 218
EG LG R +WN L
Sbjct: 723 SEGGLGFRSFGEWNKTL 739
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 62.4 bits (150), Expect = 6e-08
Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLWN-----SKTSLYAWTKVCQPK 167
R QL+SSV+ G I FW+S F P + R S +FLW+ +K +W +C PK
Sbjct: 803 RIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPK 862
Query: 168 QEGRLGLRDLAKWNLAL 218
EG LGLR L +WN L
Sbjct: 863 SEGGLGLRRLLEWNKTL 879
>ref|XP_006605183.1| PREDICTED: uncharacterized protein LOC102663533 [Glycine max]
Length = 514
Score = 61.6 bits (148), Expect = 1e-07
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLWN-----SKTSLYAWTKVCQPK 167
R QLV S++ + +W+S+FP P V+ + +S R F+W+ + SL AW +VC+P
Sbjct: 284 RIQLVRSIITAIAQYWMSVFPMPKKVIQKIDSICRSFIWSGSAEVKRKSLVAWKQVCKPA 343
Query: 168 QEGRLGLRDLAKWNL 212
+ G L L +L WN+
Sbjct: 344 RCGGLNLINLELWNV 358
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 61.6 bits (148), Expect = 1e-07
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLWNSK-----TSLYAWTKVCQPK 167
R QL++SV+ G++ FW+S F P+ + + S +FLW+S+ + AW++VC PK
Sbjct: 700 RVQLLASVISGIVNFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPK 759
Query: 168 QEGRLGLRDLAKWNLAL 218
EG +GLR A N L
Sbjct: 760 AEGGIGLRRFAVSNRTL 776
>ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcriptase)-related protein
[Arabidopsis thaliana] gi|332643359|gb|AEE76880.1|
RNA-directed DNA polymerase (reverse
transcriptase)-related protein [Arabidopsis thaliana]
Length = 746
Score = 61.6 bits (148), Expect = 1e-07
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLW-----NSKTSLYAWTKVCQPK 167
R QL+SSV+ + FW+S F P A + +S FLW N+K + AW+ VC PK
Sbjct: 66 RLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPK 125
Query: 168 QEGRLGLRDLAKWNLALRAFGTDWS 242
EG LG+R L + N G+ WS
Sbjct: 126 DEGGLGIRSLKEANK-----GSFWS 145
>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
Length = 478
Score = 61.2 bits (147), Expect = 1e-07
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLW-----NSKTSLYAWTKVCQPK 167
R QL+SSV+ + FW+S F P A + +S FLW N+K + AW+ VC PK
Sbjct: 66 RLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPK 125
Query: 168 QEGRLGLRDLAKWN 209
EG LG+R L + N
Sbjct: 126 DEGGLGIRSLKEAN 139
>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
lycopersicum]
Length = 717
Score = 60.8 bits (146), Expect = 2e-07
Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLWN-----SKTSLYAWTKVCQPK 167
R QLV +VL GV W +F P ++ R +LW+ +K +L AW KVC PK
Sbjct: 603 RAQLVKTVLFGVQALWAQLFIIPAKIIKLIEGLCRSYLWSGVGYVTKKALIAWDKVCSPK 662
Query: 168 QEGRLGLRDLAKWN 209
EG LGL +L WN
Sbjct: 663 YEGGLGLINLKIWN 676
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 60.8 bits (146), Expect = 2e-07
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLWN-----SKTSLYAWTKVCQPK 167
R QL++SV+ G++ FW+S F + + + S +FLW+ SK + AW+ VC PK
Sbjct: 799 RVQLITSVITGLVNFWMSTFVLLLGCVKKIESLCSRFLWSGSIDASKGAKIAWSGVCLPK 858
Query: 168 QEGRLGLRDLAKWN 209
EG +GLR WN
Sbjct: 859 NEGGVGLRRFTPWN 872
>ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664824 [Glycine max]
Length = 939
Score = 60.5 bits (145), Expect = 2e-07
Identities = 32/74 (43%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLW-----NSKTSLYAWTKVCQPK 167
R QL+ SV+ I FW+ P P V+ R N+ R FLW S+ S AW KVC PK
Sbjct: 623 RVQLIQSVIFATINFWMQCLPLPKFVIMRINAICRSFLWIGNSNISRKSPIAWEKVCSPK 682
Query: 168 QEGRLGLRDLAKWN 209
G L + +LA WN
Sbjct: 683 INGGLNIINLAIWN 696
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 60.5 bits (145), Expect = 2e-07
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLWNS-----KTSLYAWTKVCQPK 167
R L+SSVL + FW+S F P A L NS FLW+ + + +W +C+PK
Sbjct: 215 RLNLISSVLWSTMNFWMSAFRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPK 274
Query: 168 QEGRLGLRDLAKWNL 212
QEG LGLR L + N+
Sbjct: 275 QEGGLGLRSLTEANV 289
>gb|AAD17361.1| contains similarity to reverse transcriptases: partial CDS, partial
[Arabidopsis thaliana] gi|7267375|emb|CAB77936.1|
putative reverse transcriptase [Arabidopsis thaliana]
Length = 392
Score = 60.1 bits (144), Expect = 3e-07
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Frame = +3
Query: 9 QLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLW-----NSKTSLYAWTKVCQPKQE 173
QL+SSV+Q + FW+S F P A + NS FLW ++K + W++VC PK E
Sbjct: 176 QLISSVIQNLTNFWMSAFWLPTACIKEINSLCSAFLWSGPKLSTKKAKVVWSEVCTPKCE 235
Query: 174 GRLGLRDLAKWN 209
G LGLR L + N
Sbjct: 236 GGLGLRSLIETN 247
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 60.1 bits (144), Expect = 3e-07
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLWN-----SKTSLYAWTKVCQPK 167
R QL++SV+ G+I FW+S F P + R + +FLW+ K + AW++VC PK
Sbjct: 736 RVQLIASVISGIINFWISTFILPKGCVKRIEALCARFLWSGNIDVKKGAKVAWSEVCLPK 795
Query: 168 QEGRLGLRDLAKWNLAL 218
+EG +GLR N L
Sbjct: 796 EEGGVGLRRFTVLNTTL 812
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 59.7 bits (143), Expect = 4e-07
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +3
Query: 3 RTQLVSSVLQGVICFWLSIFPTPIAVLDRFNSHSRQFLW-----NSKTSLYAWTKVCQPK 167
R QL+ SVL + FWLS+F P A L FLW N+K + AW++VC+ K
Sbjct: 957 RLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLK 1016
Query: 168 QEGRLGLRDLAKWN 209
+EG LGL+ L + N
Sbjct: 1017 EEGGLGLKPLKEAN 1030