BLASTX nr result
ID: Rauwolfia21_contig00029837
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00029837
(1662 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_008081255.1| RNA polymerase beta' subunit (chloroplast) [... 47 2e-08
gb|ABD93856.1| RNA polymerase beta chain [Berberidopsis beckleri] 47 2e-07
gb|ADO13864.1| RNA polymerase beta subunit [Forgesia racemosa] 49 2e-07
gb|AGW04277.1| RNA polymerase beta chain [Secamone afzelii] 47 3e-07
gb|AGW04965.1| RNA polymerase beta chain [Vincetoxicum rossicum] 47 3e-07
ref|YP_008082571.1| RNA polymerase beta' subunit (chloroplast) [... 47 3e-07
gb|ABV65720.1| RNA polymerase beta'' subunit, partial (chloropla... 48 3e-07
gb|AEM44887.1| RNA polymerase beta chain [Hydrolea ovata] 46 3e-07
gb|AFU94775.1| RpoC2, partial (chloroplast) [Averrhoa carambola] 47 5e-07
gb|AFU94806.1| RpoC2, partial (chloroplast) [Phyllanthus urinaria] 47 5e-07
gb|ABV65762.1| RNA polymerase beta'' subunit (chloroplast) [Oxal... 47 5e-07
gb|ABV65764.1| RNA polymerase beta'' subunit, partial (chloropla... 47 5e-07
gb|ABD93836.1| RNA polymerase beta chain [Oxalis sp. Qiu 94028] 47 5e-07
gb|ADX99114.1| RNA polymerase beta II subunit [Lampayo castellani] 47 5e-07
gb|AEM44885.1| RNA polymerase beta chain [Strychnos spinosa] 47 5e-07
ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) ... 47 6e-07
ref|YP_004563771.1| RNA polymerase beta'' chain [Olea europaea s... 47 6e-07
emb|CBR30396.1| RNA polymerase beta'' chain [Olea europaea subsp... 47 6e-07
ref|YP_004376411.1| RNA polymerase beta'' chain [Olea europaea s... 47 6e-07
gb|ADD72079.1| RNA polymerase beta' subunit [Olea europaea] gi|3... 47 6e-07
>ref|YP_008081255.1| RNA polymerase beta' subunit (chloroplast) [Catharanthus roseus]
gi|474452066|gb|AGI51134.1| RNA polymerase beta' subunit
(chloroplast) [Catharanthus roseus]
Length = 1376
Score = 47.4 bits (111), Expect(2) = 2e-08
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILYEGDTLVT F++ ++ + + T G P
Sbjct: 1108 GATVHGHYGEILYEGDTLVT-FIYEKSR--SGDITQGLP 1143
Score = 39.7 bits (91), Expect(2) = 2e-08
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+IFVQVDSV I+LAKPYL+T G
Sbjct: 1086 QVIFVQVDSVVIRLAKPYLATPG 1108
>gb|ABD93856.1| RNA polymerase beta chain [Berberidopsis beckleri]
Length = 829
Score = 47.4 bits (111), Expect(2) = 2e-07
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILYEGDTLVT F++ ++ + + T G P
Sbjct: 628 GATVHGHYGEILYEGDTLVT-FIYEKSR--SGDITQGLP 663
Score = 36.6 bits (83), Expect(2) = 2e-07
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q++ VQVDSV I+LAKPYL+T G
Sbjct: 606 QVLIVQVDSVVIRLAKPYLATPG 628
>gb|ADO13864.1| RNA polymerase beta subunit [Forgesia racemosa]
Length = 1142
Score = 49.3 bits (116), Expect(2) = 2e-07
Identities = 25/39 (64%), Positives = 27/39 (69%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILYEGDTLVT H K + + T G P
Sbjct: 925 GATVHGHYGEILYEGDTLVTFIYH---KSRSGDITQGLP 960
Score = 34.3 bits (77), Expect(2) = 2e-07
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q++ VQVDSV I+ AKPYL+T G
Sbjct: 903 QVLIVQVDSVVIRSAKPYLATPG 925
>gb|AGW04277.1| RNA polymerase beta chain [Secamone afzelii]
Length = 1380
Score = 47.4 bits (111), Expect(2) = 3e-07
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILYEGDTLVT F++ ++ + + T G P
Sbjct: 1106 GATVHGHYGEILYEGDTLVT-FIYEKSR--SGDITQGLP 1141
Score = 35.8 bits (81), Expect(2) = 3e-07
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+IFVQ DSV I+ AKPYL+T G
Sbjct: 1084 QVIFVQADSVVIRSAKPYLATPG 1106
>gb|AGW04965.1| RNA polymerase beta chain [Vincetoxicum rossicum]
Length = 1379
Score = 47.4 bits (111), Expect(2) = 3e-07
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILYEGDTLVT F++ ++ + + T G P
Sbjct: 1113 GATVHGHYGEILYEGDTLVT-FIYEKSR--SGDITQGLP 1148
Score = 35.8 bits (81), Expect(2) = 3e-07
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+IFVQ DSV I+ AKPYL+T G
Sbjct: 1091 QVIFVQADSVVIRSAKPYLATPG 1113
>ref|YP_008082571.1| RNA polymerase beta' subunit (chloroplast) [Utricularia gibba]
gi|498921844|gb|AGL61065.1| RNA polymerase beta' subunit
(chloroplast) [Utricularia gibba]
Length = 1363
Score = 47.0 bits (110), Expect(2) = 3e-07
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILYEGDTL+T F++ ++ + + T G P
Sbjct: 1112 GATVHGHYGEILYEGDTLIT-FIYEKSR--SGDITQGLP 1147
Score = 36.2 bits (82), Expect(2) = 3e-07
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+I ++VDSV I+LAKPYL+T G
Sbjct: 1090 QIILIEVDSVVIRLAKPYLATPG 1112
>gb|ABV65720.1| RNA polymerase beta'' subunit, partial (chloroplast) [Cephalotus
follicularis]
Length = 1257
Score = 48.1 bits (113), Expect(2) = 3e-07
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILYEGDTLVT FL+ ++ + + T G P
Sbjct: 1077 GATVHGHYGEILYEGDTLVT-FLYEKSR--SGDITQGLP 1112
Score = 35.0 bits (79), Expect(2) = 3e-07
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+I VQVDSV I+ AKPYL+T G
Sbjct: 1055 QVIIVQVDSVVIRSAKPYLATPG 1077
>gb|AEM44887.1| RNA polymerase beta chain [Hydrolea ovata]
Length = 465
Score = 45.8 bits (107), Expect(2) = 3e-07
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GAT+HGHYGEILY+GDTLVT FL+ ++ + + T G P
Sbjct: 308 GATLHGHYGEILYQGDTLVT-FLYEKSR--SGDITQGLP 343
Score = 37.4 bits (85), Expect(2) = 3e-07
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+IFVQVDSV I+ AKPYL+T G
Sbjct: 286 QVIFVQVDSVVIRSAKPYLATPG 308
>gb|AFU94775.1| RpoC2, partial (chloroplast) [Averrhoa carambola]
Length = 1630
Score = 47.4 bits (111), Expect(2) = 5e-07
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILYEGDTLVT F++ ++ + + T G P
Sbjct: 1322 GATVHGHYGEILYEGDTLVT-FIYEKSR--SGDITQGLP 1357
Score = 35.0 bits (79), Expect(2) = 5e-07
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+I VQVDSV I+ AKPYL+T G
Sbjct: 1300 QVIIVQVDSVVIRSAKPYLATPG 1322
>gb|AFU94806.1| RpoC2, partial (chloroplast) [Phyllanthus urinaria]
Length = 1615
Score = 47.4 bits (111), Expect(2) = 5e-07
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILYEGDTLVT F++ ++ + + T G P
Sbjct: 1322 GATVHGHYGEILYEGDTLVT-FIYEKSR--SGDITQGLP 1357
Score = 35.0 bits (79), Expect(2) = 5e-07
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+I VQVDSV I+ AKPYL+T G
Sbjct: 1300 QVIIVQVDSVVIRSAKPYLATPG 1322
>gb|ABV65762.1| RNA polymerase beta'' subunit (chloroplast) [Oxalis latifolia]
Length = 1370
Score = 47.4 bits (111), Expect(2) = 5e-07
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILYEGDTLVT F++ ++ + + T G P
Sbjct: 1094 GATVHGHYGEILYEGDTLVT-FIYEKSR--SGDITQGLP 1129
Score = 35.0 bits (79), Expect(2) = 5e-07
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+I VQVDSV I+ AKPYL+T G
Sbjct: 1072 QVIIVQVDSVVIRSAKPYLATPG 1094
>gb|ABV65764.1| RNA polymerase beta'' subunit, partial (chloroplast) [Phyllanthus
calycinus]
Length = 1271
Score = 47.4 bits (111), Expect(2) = 5e-07
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILYEGDTLVT F++ ++ + + T G P
Sbjct: 1077 GATVHGHYGEILYEGDTLVT-FIYEKSR--SGDITQGLP 1112
Score = 35.0 bits (79), Expect(2) = 5e-07
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+I VQVDSV I+ AKPYL+T G
Sbjct: 1055 QVIIVQVDSVVIRSAKPYLATPG 1077
>gb|ABD93836.1| RNA polymerase beta chain [Oxalis sp. Qiu 94028]
Length = 827
Score = 47.4 bits (111), Expect(2) = 5e-07
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILYEGDTLVT F++ ++ + + T G P
Sbjct: 651 GATVHGHYGEILYEGDTLVT-FIYEKSR--SGDITQGLP 686
Score = 35.0 bits (79), Expect(2) = 5e-07
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+I VQVDSV I+ AKPYL+T G
Sbjct: 629 QVIIVQVDSVVIRSAKPYLATPG 651
>gb|ADX99114.1| RNA polymerase beta II subunit [Lampayo castellani]
Length = 701
Score = 47.4 bits (111), Expect(2) = 5e-07
Identities = 23/39 (58%), Positives = 31/39 (79%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILY+GDTL+T F++ ++ +A+ T G P
Sbjct: 466 GATVHGHYGEILYQGDTLIT-FIYEKSR--SADITQGLP 501
Score = 35.0 bits (79), Expect(2) = 5e-07
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+I VQVDSV I+ AKPYL+T G
Sbjct: 444 QVILVQVDSVVIRSAKPYLATPG 466
>gb|AEM44885.1| RNA polymerase beta chain [Strychnos spinosa]
Length = 467
Score = 47.4 bits (111), Expect(2) = 5e-07
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEI+YEGDTLVT FL+ ++ + + T G P
Sbjct: 313 GATVHGHYGEIIYEGDTLVT-FLYEKSR--SGDITQGLP 348
Score = 35.0 bits (79), Expect(2) = 5e-07
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+IFVQVDSV I+ AKPYL+ G
Sbjct: 291 QVIFVQVDSVVIRSAKPYLAIPG 313
>ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) [Salvia miltiorrhiza]
gi|401879732|gb|AFQ30919.1| RNA polymerase beta subunit-2
(chloroplast) [Salvia miltiorrhiza]
gi|573461941|emb|CCQ71610.1| RNA polymerase beta''
subunit (chloroplast) [Salvia miltiorrhiza]
Length = 1395
Score = 47.0 bits (110), Expect(2) = 6e-07
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILYEGDTL+T F++ ++ + + T G P
Sbjct: 1117 GATVHGHYGEILYEGDTLIT-FIYEKSR--SGDITQGLP 1152
Score = 35.0 bits (79), Expect(2) = 6e-07
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+I VQVDSV I+ AKPYL+T G
Sbjct: 1095 QVILVQVDSVVIRSAKPYLATPG 1117
>ref|YP_004563771.1| RNA polymerase beta'' chain [Olea europaea subsp. cuspidata]
gi|334084940|emb|CBJ04288.1| RNA polymerase beta'' chain
[Olea europaea subsp. cuspidata]
Length = 1394
Score = 47.0 bits (110), Expect(2) = 6e-07
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILYEGDTL+T F++ ++ + + T G P
Sbjct: 1118 GATVHGHYGEILYEGDTLIT-FIYEKSR--SGDITQGLP 1153
Score = 35.0 bits (79), Expect(2) = 6e-07
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+I VQVDSV I+ AKPYL+T G
Sbjct: 1096 QVILVQVDSVVIRSAKPYLATPG 1118
>emb|CBR30396.1| RNA polymerase beta'' chain [Olea europaea subsp. europaea]
Length = 1394
Score = 47.0 bits (110), Expect(2) = 6e-07
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILYEGDTL+T F++ ++ + + T G P
Sbjct: 1118 GATVHGHYGEILYEGDTLIT-FIYEKSR--SGDITQGLP 1153
Score = 35.0 bits (79), Expect(2) = 6e-07
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+I VQVDSV I+ AKPYL+T G
Sbjct: 1096 QVILVQVDSVVIRSAKPYLATPG 1118
>ref|YP_004376411.1| RNA polymerase beta'' chain [Olea europaea subsp. europaea]
gi|334701878|ref|YP_004564487.1| RNA polymerase beta''
chain [Olea europaea subsp. maroccana]
gi|328795423|emb|CBR30304.1| RNA polymerase beta'' chain
[Olea europaea subsp. europaea]
gi|334084391|emb|CBR23819.1| RNA polymerase beta'' chain
[Olea europaea subsp. cuspidata]
gi|334084854|emb|CBS29226.1| RNA polymerase beta'' chain
[Olea europaea subsp. maroccana]
gi|334085026|emb|CBR23728.1| RNA polymerase beta'' chain
[Olea europaea subsp. cuspidata]
Length = 1394
Score = 47.0 bits (110), Expect(2) = 6e-07
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILYEGDTL+T F++ ++ + + T G P
Sbjct: 1118 GATVHGHYGEILYEGDTLIT-FIYEKSR--SGDITQGLP 1153
Score = 35.0 bits (79), Expect(2) = 6e-07
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+I VQVDSV I+ AKPYL+T G
Sbjct: 1096 QVILVQVDSVVIRSAKPYLATPG 1118
>gb|ADD72079.1| RNA polymerase beta' subunit [Olea europaea]
gi|334084477|emb|CBR24610.1| RNA polymerase beta'' chain
[Olea europaea subsp. europaea]
gi|510934394|emb|CCQ09092.1| RNA polymerase beta'' chain
(chloroplast) [Olea europaea subsp. europaea]
Length = 1394
Score = 47.0 bits (110), Expect(2) = 6e-07
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +3
Query: 273 GATVHGHYGEILYEGDTLVTSFLHSDNKK*TANPTTGYP 389
GATVHGHYGEILYEGDTL+T F++ ++ + + T G P
Sbjct: 1118 GATVHGHYGEILYEGDTLIT-FIYEKSR--SGDITQGLP 1153
Score = 35.0 bits (79), Expect(2) = 6e-07
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 206 QLIFVQVDSVAIKLAKPYLSTQG 274
Q+I VQVDSV I+ AKPYL+T G
Sbjct: 1096 QVILVQVDSVVIRSAKPYLATPG 1118