BLASTX nr result
ID: Rauwolfia21_contig00024851
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00024851
(702 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_008592631.1| RNA polymerase beta subunit (chloroplast) [B... 66 9e-09
gb|AHH24325.1| RNA polymerase beta subunit (chloroplast) [Japono... 66 1e-08
gb|AHH30433.1| RNA polymerase beta subunit (chloroplast) [Bartsi... 66 1e-08
ref|YP_009002250.1| RNA polymerase beta subunit (chloroplast) [P... 66 1e-08
gb|AHE41631.1| RNA polymerase beta subunit protein, partial (chl... 66 1e-08
gb|AHE41627.1| RNA polymerase beta subunit protein, partial (chl... 66 1e-08
gb|AHE41625.1| RNA polymerase beta subunit protein, partial (chl... 66 1e-08
gb|AHE41623.1| RNA polymerase beta subunit protein, partial (chl... 66 1e-08
gb|AHE41621.1| RNA polymerase beta subunit protein (chloroplast)... 66 1e-08
gb|AHE41620.1| RNA polymerase beta subunit protein (chloroplast)... 66 1e-08
gb|AHE41619.1| RNA polymerase beta subunit protein (chloroplast)... 66 1e-08
gb|AHE41618.1| RNA polymerase beta subunit protein (chloroplast)... 66 1e-08
gb|AHE41617.1| RNA polymerase beta subunit protein (chloroplast)... 66 1e-08
ref|XP_006356788.1| PREDICTED: DNA-directed RNA polymerase subun... 66 1e-08
ref|YP_008963683.1| RNA polymerase beta subunit (chloroplast) [L... 66 1e-08
ref|YP_008963472.1| RNA polymerase beta subunit (chloroplast) [P... 66 1e-08
ref|YP_008964026.1| RNA polymerase beta subunit [Ajuga reptans] ... 66 1e-08
gb|AGW04279.1| RNA polymerase beta subunit [Secamone afzelii] 66 1e-08
gb|AEX37300.2| RNA polymerase beta subunit (chloroplast) [Arbutu... 66 1e-08
ref|YP_008578165.1| RNA polymerase beta subunit (chloroplast) [S... 66 1e-08
>ref|YP_008592631.1| RNA polymerase beta subunit (chloroplast) [Berberis bealei]
gi|536462672|gb|AGU37037.1| RNA polymerase beta subunit
(chloroplast) [Berberis bealei]
Length = 1070
Score = 66.2 bits (160), Expect = 9e-09
Identities = 35/39 (89%), Positives = 37/39 (94%), Gaps = 1/39 (2%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS-YCAM 328
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S CA+
Sbjct: 542 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDSGVCAI 580
>gb|AHH24325.1| RNA polymerase beta subunit (chloroplast) [Japonolirion osense]
Length = 1070
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 542 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 575
>gb|AHH30433.1| RNA polymerase beta subunit (chloroplast) [Bartsia inaequalis]
Length = 1070
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 542 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 575
>ref|YP_009002250.1| RNA polymerase beta subunit (chloroplast) [Pinguicula ehlersiae]
gi|575882132|emb|CDL78806.1| RNA polymerase beta subunit
(chloroplast) [Pinguicula ehlersiae]
Length = 1070
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 542 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 575
>gb|AHE41631.1| RNA polymerase beta subunit protein, partial (chloroplast) [Ribes
fasciculatum var. chinense]
Length = 794
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 526 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 559
>gb|AHE41627.1| RNA polymerase beta subunit protein, partial (chloroplast)
[Mytilaria laosensis]
Length = 793
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 525 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 558
>gb|AHE41625.1| RNA polymerase beta subunit protein, partial (chloroplast) [Gunnera
manicata]
Length = 794
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 526 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 559
>gb|AHE41623.1| RNA polymerase beta subunit protein, partial (chloroplast)
[Disanthus cercidifolius subsp. longipes]
Length = 794
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 526 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 559
>gb|AHE41621.1| RNA polymerase beta subunit protein (chloroplast) [Itea chinensis]
Length = 1070
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 542 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 575
>gb|AHE41620.1| RNA polymerase beta subunit protein (chloroplast) [Daphniphyllum
oldhamii]
Length = 1070
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 542 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 575
>gb|AHE41619.1| RNA polymerase beta subunit protein (chloroplast) [Saxifraga
stolonifera]
Length = 1074
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 546 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 579
>gb|AHE41618.1| RNA polymerase beta subunit protein (chloroplast) [Ribes
fasciculatum var. chinense]
Length = 1070
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 542 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 575
>gb|AHE41617.1| RNA polymerase beta subunit protein (chloroplast) [Hamamelis
mollis]
Length = 1070
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 542 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 575
>ref|XP_006356788.1| PREDICTED: DNA-directed RNA polymerase subunit beta-like [Solanum
tuberosum]
Length = 751
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 223 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 256
>ref|YP_008963683.1| RNA polymerase beta subunit (chloroplast) [Liquidambar formosana]
gi|491650363|gb|AGL13423.1| RNA polymerase beta subunit
(chloroplast) [Liquidambar formosana]
Length = 1070
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 542 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 575
>ref|YP_008963472.1| RNA polymerase beta subunit (chloroplast) [Penthorum chinense]
gi|403226773|gb|AFR25652.1| RNA polymerase beta subunit
(chloroplast) [Penthorum chinense]
Length = 1070
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 542 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 575
>ref|YP_008964026.1| RNA polymerase beta subunit [Ajuga reptans]
gi|558697183|gb|AHA84938.1| RNA polymerase beta subunit
[Ajuga reptans]
Length = 1070
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 542 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 575
>gb|AGW04279.1| RNA polymerase beta subunit [Secamone afzelii]
Length = 1070
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 542 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 575
>gb|AEX37300.2| RNA polymerase beta subunit (chloroplast) [Arbutus unedo]
Length = 1072
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 544 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 577
>ref|YP_008578165.1| RNA polymerase beta subunit (chloroplast) [Stockwellia quadrifida]
gi|442569413|gb|AGC59574.1| RNA polymerase beta subunit
(chloroplast) [Stockwellia quadrifida]
Length = 1072
Score = 65.9 bits (159), Expect = 1e-08
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2
Query: 215 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALNS 316
ALMSSNMQRQAVPLSRSEKCIVGTGLERQAAL+S
Sbjct: 544 ALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDS 577