BLASTX nr result
ID: Rauwolfia21_contig00024542
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00024542
(635 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADD29934.1| ribosomal protein S3 [Nerium oleander] 97 5e-18
gb|AGW04858.1| ribosomal protein S3 [Sisyranthus trichostomus] 96 7e-18
gb|AGW04627.1| ribosomal protein S3 [Marsdenia astephanoides] 96 7e-18
ref|YP_008081304.1| ribosomal protein S3 (chloroplast) [Catharan... 96 9e-18
ref|YP_398903.1| ribosomal protein S3 [Nicotiana tomentosiformis... 96 1e-17
ref|NP_054537.1| ribosomal protein S3 [Nicotiana tabacum] gi|781... 96 1e-17
ref|YP_004891646.1| rps3 gene product (chloroplast) [Nicotiana u... 96 1e-17
gb|AGW04704.1| ribosomal protein S3 [Matelea biflora] 95 2e-17
gb|AGW04935.1| ribosomal protein S3 [Telosma cordata] 94 3e-17
gb|ADX99155.1| ribosomal protein S3 [Petrea volubilis] 94 3e-17
ref|YP_008963517.1| ribosomal protein S3 (chloroplast) [Penthoru... 94 3e-17
ref|YP_008963434.1| ribosomal protein S3 (chloroplast) [Sedum sa... 94 3e-17
gb|AGW05012.1| ribosomal protein S3 [Vincetoxicum rossicum] 94 3e-17
gb|AGW04781.1| ribosomal protein S3 [Orthosia scoparia] 94 3e-17
gb|AGW04401.1| ribosomal protein S3 [Araujia sericifera] 94 3e-17
gb|AGW04324.1| ribosomal protein S3 [Secamone afzelii] 94 3e-17
gb|AEX65463.1| 30S ribosomal protein S3 [Mollugo verticillata] 94 3e-17
gb|ADD29927.1| ribosomal protein S3 [Aucuba japonica] 94 3e-17
ref|YP_008964073.1| ribosomal protein S3 [Ajuga reptans] gi|5586... 94 4e-17
gb|AFV61851.1| ribosomal protein S3 (chloroplast) [Origanum vulg... 94 4e-17
>gb|ADD29934.1| ribosomal protein S3 [Nerium oleander]
Length = 218
Score = 96.7 bits (239), Expect = 5e-18
Identities = 58/90 (64%), Positives = 62/90 (68%), Gaps = 12/90 (13%)
Frame = -2
Query: 559 LL*VVFFHGTEKVCFNSL--GGRESQTTEEI----------FAIKRIAKPYGNPNILAEF 416
L+ V+ F G K S G E QTT + AIKRIAKPYGNPNILAEF
Sbjct: 71 LIQVIIFMGFPKFLLESRPRGVEELQTTLQKEFNCMNRKLNIAIKRIAKPYGNPNILAEF 130
Query: 415 IAGQLKNRVSFRKAMKKAIELTEQADTKGI 326
+AGQLKNRVSFRKAMKKAIELTEQADTKGI
Sbjct: 131 LAGQLKNRVSFRKAMKKAIELTEQADTKGI 160
>gb|AGW04858.1| ribosomal protein S3 [Sisyranthus trichostomus]
Length = 218
Score = 96.3 bits (238), Expect = 7e-18
Identities = 58/90 (64%), Positives = 62/90 (68%), Gaps = 12/90 (13%)
Frame = -2
Query: 559 LL*VVFFHGTEKVCFNSL--GGRESQTTEEI----------FAIKRIAKPYGNPNILAEF 416
L+ V+ F G K+ S G E QTT + AIKRI KPYGNPNILAEF
Sbjct: 71 LIQVIIFMGFPKLLLESRPRGVEELQTTLQKEFNCMNRKLNIAIKRIPKPYGNPNILAEF 130
Query: 415 IAGQLKNRVSFRKAMKKAIELTEQADTKGI 326
IAGQLKNRVSFRKAMKKAIELTEQADTKGI
Sbjct: 131 IAGQLKNRVSFRKAMKKAIELTEQADTKGI 160
>gb|AGW04627.1| ribosomal protein S3 [Marsdenia astephanoides]
Length = 218
Score = 96.3 bits (238), Expect = 7e-18
Identities = 58/90 (64%), Positives = 62/90 (68%), Gaps = 12/90 (13%)
Frame = -2
Query: 559 LL*VVFFHGTEKVCFNSL--GGRESQTTEEI----------FAIKRIAKPYGNPNILAEF 416
L+ V+ F G K+ S G E QTT + AIKRI KPYGNPNILAEF
Sbjct: 71 LIQVIIFMGFPKLLLESRPRGVEELQTTLQKEFNCMNRKLNIAIKRIPKPYGNPNILAEF 130
Query: 415 IAGQLKNRVSFRKAMKKAIELTEQADTKGI 326
IAGQLKNRVSFRKAMKKAIELTEQADTKGI
Sbjct: 131 IAGQLKNRVSFRKAMKKAIELTEQADTKGI 160
>ref|YP_008081304.1| ribosomal protein S3 (chloroplast) [Catharanthus roseus]
gi|474452115|gb|AGI51183.1| ribosomal protein S3
(chloroplast) [Catharanthus roseus]
Length = 218
Score = 95.9 bits (237), Expect = 9e-18
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = -2
Query: 469 AIKRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGI 326
AIKRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGI
Sbjct: 113 AIKRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGI 160
>ref|YP_398903.1| ribosomal protein S3 [Nicotiana tomentosiformis]
gi|91207772|sp|Q33BZ3.1|RR3_NICTO RecName: Full=30S
ribosomal protein S3, chloroplastic
gi|80750966|dbj|BAE48042.1| ribosomal protein S3
[Nicotiana tomentosiformis]
Length = 218
Score = 95.5 bits (236), Expect = 1e-17
Identities = 58/92 (63%), Positives = 63/92 (68%), Gaps = 12/92 (13%)
Frame = -2
Query: 559 LL*VVFFHGTEKVCFNSL--GGRESQTTEEI----------FAIKRIAKPYGNPNILAEF 416
L+ V+ F G K+ S G E QTT + A+ RIAKPYGNPNILAEF
Sbjct: 71 LIQVIIFMGFPKLLIESRPRGIEELQTTLQKEFNCVNRKLNIAVTRIAKPYGNPNILAEF 130
Query: 415 IAGQLKNRVSFRKAMKKAIELTEQADTKGIII 320
IAGQLKNRVSFRKAMKKAIELTEQADTKGI I
Sbjct: 131 IAGQLKNRVSFRKAMKKAIELTEQADTKGIQI 162
>ref|NP_054537.1| ribosomal protein S3 [Nicotiana tabacum]
gi|78102577|ref|YP_358717.1| ribosomal protein S3
[Nicotiana sylvestris] gi|133939|sp|P06357.1|RR3_TOBAC
RecName: Full=30S ribosomal protein S3, chloroplastic
gi|91207771|sp|Q3C1L6.1|RR3_NICSY RecName: Full=30S
ribosomal protein S3, chloroplastic
gi|11865|emb|CAA77381.1| ribosomal protein S3 [Nicotiana
tabacum] gi|77799604|dbj|BAE46693.1| ribosomal protein
S3 [Nicotiana sylvestris] gi|225235|prf||1211235BT
ribosomal protein S3
Length = 218
Score = 95.5 bits (236), Expect = 1e-17
Identities = 58/92 (63%), Positives = 63/92 (68%), Gaps = 12/92 (13%)
Frame = -2
Query: 559 LL*VVFFHGTEKVCFNSL--GGRESQTTEEI----------FAIKRIAKPYGNPNILAEF 416
L+ V+ F G K+ S G E QTT + A+ RIAKPYGNPNILAEF
Sbjct: 71 LIQVIIFMGFPKLLIESRPRGIEELQTTLQKEFHCVNRKLNIAVTRIAKPYGNPNILAEF 130
Query: 415 IAGQLKNRVSFRKAMKKAIELTEQADTKGIII 320
IAGQLKNRVSFRKAMKKAIELTEQADTKGI I
Sbjct: 131 IAGQLKNRVSFRKAMKKAIELTEQADTKGIQI 162
>ref|YP_004891646.1| rps3 gene product (chloroplast) [Nicotiana undulata]
gi|347453949|gb|AEO95607.1| ribosomal protein S3
(chloroplast) [Nicotiana undulata]
gi|347454060|gb|AEO95717.1| ribosomal protein S3
[synthetic construct]
Length = 218
Score = 95.5 bits (236), Expect = 1e-17
Identities = 58/92 (63%), Positives = 63/92 (68%), Gaps = 12/92 (13%)
Frame = -2
Query: 559 LL*VVFFHGTEKVCFNSL--GGRESQTTEEI----------FAIKRIAKPYGNPNILAEF 416
L+ V+ F G K+ S G E QTT + A+ RIAKPYGNPNILAEF
Sbjct: 71 LIQVIIFMGFPKLLIESRPRGIEELQTTLQKEFNCVNRKLNIAVTRIAKPYGNPNILAEF 130
Query: 415 IAGQLKNRVSFRKAMKKAIELTEQADTKGIII 320
IAGQLKNRVSFRKAMKKAIELTEQADTKGI I
Sbjct: 131 IAGQLKNRVSFRKAMKKAIELTEQADTKGIQI 162
>gb|AGW04704.1| ribosomal protein S3 [Matelea biflora]
Length = 218
Score = 94.7 bits (234), Expect = 2e-17
Identities = 57/90 (63%), Positives = 62/90 (68%), Gaps = 12/90 (13%)
Frame = -2
Query: 559 LL*VVFFHGTEKVCFNSL--GGRESQTTEEI----------FAIKRIAKPYGNPNILAEF 416
L+ V+ F G K+ S G +E QTT + AIKRI KPYGNP ILAEF
Sbjct: 71 LIQVIIFMGFPKLLLESRPRGVKELQTTLQKEFNCINQKLNIAIKRIPKPYGNPKILAEF 130
Query: 415 IAGQLKNRVSFRKAMKKAIELTEQADTKGI 326
IAGQLKNRVSFRKAMKKAIELTEQADTKGI
Sbjct: 131 IAGQLKNRVSFRKAMKKAIELTEQADTKGI 160
>gb|AGW04935.1| ribosomal protein S3 [Telosma cordata]
Length = 216
Score = 94.4 bits (233), Expect = 3e-17
Identities = 57/90 (63%), Positives = 62/90 (68%), Gaps = 12/90 (13%)
Frame = -2
Query: 559 LL*VVFFHGTEKVCFNSL--GGRESQTTEEI----------FAIKRIAKPYGNPNILAEF 416
L+ V+ F G K+ S G E QTT + AIKRI KPYGNP+ILAEF
Sbjct: 71 LIQVIIFMGFPKLLLESRPRGVEELQTTLQKEFNCMNRKLNIAIKRIPKPYGNPHILAEF 130
Query: 415 IAGQLKNRVSFRKAMKKAIELTEQADTKGI 326
IAGQLKNRVSFRKAMKKAIELTEQADTKGI
Sbjct: 131 IAGQLKNRVSFRKAMKKAIELTEQADTKGI 160
>gb|ADX99155.1| ribosomal protein S3 [Petrea volubilis]
Length = 195
Score = 94.4 bits (233), Expect = 3e-17
Identities = 47/48 (97%), Positives = 48/48 (100%)
Frame = -2
Query: 469 AIKRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGI 326
AIKRIAKPYGNPNILAEFIAGQLKNRVSFRKA+KKAIELTEQADTKGI
Sbjct: 88 AIKRIAKPYGNPNILAEFIAGQLKNRVSFRKAIKKAIELTEQADTKGI 135
>ref|YP_008963517.1| ribosomal protein S3 (chloroplast) [Penthorum chinense]
gi|403226818|gb|AFR25697.1| ribosomal protein S3
(chloroplast) [Penthorum chinense]
Length = 218
Score = 94.0 bits (232), Expect = 3e-17
Identities = 48/50 (96%), Positives = 48/50 (96%)
Frame = -2
Query: 469 AIKRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIII 320
AI RIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGI I
Sbjct: 113 AITRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQI 162
>ref|YP_008963434.1| ribosomal protein S3 (chloroplast) [Sedum sarmentosum]
gi|402797569|gb|AFQ99101.1| ribosomal protein S3
(chloroplast) [Sedum sarmentosum]
Length = 218
Score = 94.0 bits (232), Expect = 3e-17
Identities = 48/50 (96%), Positives = 48/50 (96%)
Frame = -2
Query: 469 AIKRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIII 320
AI RIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGI I
Sbjct: 113 AITRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQI 162
>gb|AGW05012.1| ribosomal protein S3 [Vincetoxicum rossicum]
Length = 218
Score = 94.0 bits (232), Expect = 3e-17
Identities = 57/90 (63%), Positives = 61/90 (67%), Gaps = 12/90 (13%)
Frame = -2
Query: 559 LL*VVFFHGTEKVCFNSL--GGRESQTTEEI----------FAIKRIAKPYGNPNILAEF 416
L+ V+ F G K+ S G E QTT + AIKRI KPYGNP ILAEF
Sbjct: 71 LIQVIIFMGFPKLLLESRPRGVEELQTTLQKEFNCMNRKLNIAIKRIPKPYGNPKILAEF 130
Query: 415 IAGQLKNRVSFRKAMKKAIELTEQADTKGI 326
IAGQLKNRVSFRKAMKKAIELTEQADTKGI
Sbjct: 131 IAGQLKNRVSFRKAMKKAIELTEQADTKGI 160
>gb|AGW04781.1| ribosomal protein S3 [Orthosia scoparia]
Length = 218
Score = 94.0 bits (232), Expect = 3e-17
Identities = 57/90 (63%), Positives = 61/90 (67%), Gaps = 12/90 (13%)
Frame = -2
Query: 559 LL*VVFFHGTEKVCFNSL--GGRESQTTEEI----------FAIKRIAKPYGNPNILAEF 416
L+ V+ F G K+ S G E QTT + AIKRI KPYGNP ILAEF
Sbjct: 71 LIQVIIFMGFPKLLLESRPRGVEELQTTLQKEFNCMNRKLNIAIKRIPKPYGNPKILAEF 130
Query: 415 IAGQLKNRVSFRKAMKKAIELTEQADTKGI 326
IAGQLKNRVSFRKAMKKAIELTEQADTKGI
Sbjct: 131 IAGQLKNRVSFRKAMKKAIELTEQADTKGI 160
>gb|AGW04401.1| ribosomal protein S3 [Araujia sericifera]
Length = 218
Score = 94.0 bits (232), Expect = 3e-17
Identities = 57/90 (63%), Positives = 61/90 (67%), Gaps = 12/90 (13%)
Frame = -2
Query: 559 LL*VVFFHGTEKVCFNSL--GGRESQTTEEI----------FAIKRIAKPYGNPNILAEF 416
L+ V+ F G K+ S G E QTT + AIKRI KPYGNP ILAEF
Sbjct: 71 LIQVIIFMGFPKLLLESRPRGVEELQTTLQKEFNCMNRKLNIAIKRIPKPYGNPKILAEF 130
Query: 415 IAGQLKNRVSFRKAMKKAIELTEQADTKGI 326
IAGQLKNRVSFRKAMKKAIELTEQADTKGI
Sbjct: 131 IAGQLKNRVSFRKAMKKAIELTEQADTKGI 160
>gb|AGW04324.1| ribosomal protein S3 [Secamone afzelii]
Length = 218
Score = 94.0 bits (232), Expect = 3e-17
Identities = 47/48 (97%), Positives = 47/48 (97%)
Frame = -2
Query: 469 AIKRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGI 326
AIKRI KPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGI
Sbjct: 113 AIKRIPKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGI 160
>gb|AEX65463.1| 30S ribosomal protein S3 [Mollugo verticillata]
Length = 218
Score = 94.0 bits (232), Expect = 3e-17
Identities = 48/50 (96%), Positives = 48/50 (96%)
Frame = -2
Query: 469 AIKRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIII 320
AI RIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGI I
Sbjct: 113 AITRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQI 162
>gb|ADD29927.1| ribosomal protein S3 [Aucuba japonica]
Length = 218
Score = 94.0 bits (232), Expect = 3e-17
Identities = 48/50 (96%), Positives = 48/50 (96%)
Frame = -2
Query: 469 AIKRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIII 320
AI RIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGI I
Sbjct: 113 AITRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQI 162
>ref|YP_008964073.1| ribosomal protein S3 [Ajuga reptans] gi|558697194|gb|AHA84949.1|
ribosomal protein S3 [Ajuga reptans]
Length = 216
Score = 93.6 bits (231), Expect = 4e-17
Identities = 47/48 (97%), Positives = 47/48 (97%)
Frame = -2
Query: 469 AIKRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGI 326
AI RIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGI
Sbjct: 113 AITRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGI 160
>gb|AFV61851.1| ribosomal protein S3 (chloroplast) [Origanum vulgare subsp.
vulgare]
Length = 220
Score = 93.6 bits (231), Expect = 4e-17
Identities = 47/48 (97%), Positives = 47/48 (97%)
Frame = -2
Query: 469 AIKRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGI 326
AI RIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGI
Sbjct: 113 AITRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGI 160