BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00022527
         (3758 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis tha...   248   2e-86
gb|AAC02664.1| polyprotein [Arabidopsis thaliana]                     248   4e-84
gb|AAC02666.1| polyprotein [Arabidopsis thaliana]                     248   5e-84
gb|AAC02669.1| polyprotein [Arabidopsis thaliana]                     248   5e-84
gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsi...   241   4e-82
gb|AAC02672.1| polyprotein [Arabidopsis arenosa]                      241   1e-81
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   228   1e-81
dbj|BAK41512.1| C-end truncated polyprotein [Arabidopsis thaliana]    232   1e-80
dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]                    224   2e-79
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   234   2e-79
gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thal...   231   1e-78
dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]                    231   1e-78
gb|AAK62793.1|AC027036_14 polyprotein, putative [Arabidopsis tha...   231   1e-78
dbj|BAA87949.1| retrotransposon homolog, partial [Arabidopsis th...   231   1e-78
dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]                    231   1e-78
dbj|BAM42647.1| polyprotein [Arabidopsis thaliana] gi|403406144|...   232   2e-78
gb|AAC79110.1| putative polyprotein of LTR transposon [Arabidops...   232   2e-78
dbj|BAA78424.1| polyprotein [Arabidopsis thaliana] gi|404433798|...   232   2e-78
dbj|BAA78426.1| polyprotein [Arabidopsis thaliana]                    232   3e-78
dbj|BAM42649.1| Polyprotein [Arabidopsis thaliana]                    232   3e-78

>gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis thaliana]
            gi|225898008|dbj|BAH30336.1| hypothetical protein
            [Arabidopsis thaliana]
          Length = 1459

 Score =  248 bits (632), Expect(2) = 2e-86
 Identities = 145/390 (37%), Positives = 209/390 (53%), Gaps = 12/390 (3%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNL---AYTAEYNP--PMSAFSSMDLMNPI----WCLDYGATH 1145
            CQIC+  GH+AR C + Q +   A ++ ++P  P    +++ + +P     W LD GATH
Sbjct: 286  CQICSVQGHSARRCPQLQAMQLPASSSAHSPFTPWQPRANLAIGSPYAANPWLLDSGATH 345

Query: 1146 HMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIKKK 1325
            H+T   + L+  QPY G   + + +G+ L                LAL+ VL +P I+K 
Sbjct: 346  HITSDLNALSLHQPYNGGEYVMIADGTGLTIKQTGSTFLPSQNRDLALHKVLYVPDIRKN 405

Query: 1326 FLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFYHLQTSSFPSGSQLFFGA 1505
             +S+ R    N    E   A F VKD  TG +LL G +KD  Y    ++ P  + LF   
Sbjct: 406  LISVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTKDDLYEWPVTN-PPATALFTSP 464

Query: 1506 --RTNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLPFSDRDS 1679
              +T    WH+RLGHPS +I N L  K+ LP+     +   C  C I KS KLPF+    
Sbjct: 465  SPKTTLSSWHSRLGHPSASILNTLLSKFSLPVSVASSNKTSCSDCLINKSHKLPFATSSI 524

Query: 1680 CTKTPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTFVFFKKN 1859
             + +PLE +  D+W  SP+ S   Y+YYL ++D YTRY W YPL + S   +TF+ FK  
Sbjct: 525  HSSSPLEYIFTDVW-TSPIISHDNYKYYLVLVDHYTRYTWLYPLQQKSQVKATFIAFKAL 583

Query: 1860 -DRKFSFSFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKHRHIVGM 2036
             + +F       + +     I  +   FL  NGI H  S P T + NG++ERKHRHIV  
Sbjct: 584  VENRFQAKIRTLYSDNGGEFI--ALRDFLVSNGISHLTSPPHTPEHNGLSERKHRHIVET 641

Query: 2037 GLYLLSQSALPSKYWVEAFSTTVFLINHLP 2126
            GL LL+Q+++P +YW  AF+T V+LIN +P
Sbjct: 642  GLTLLTQASVPREYWTYAFATAVYLINRMP 671



 Score =  102 bits (253), Expect(2) = 2e-86
 Identities = 55/144 (38%), Positives = 81/144 (56%), Gaps = 6/144 (4%)
 Frame = +1

Query: 2161 VIGKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIF 2340
            + G  P+Y+ LR+FGC CFP+L PY   KL+ +S +CVFL Y  +   Y C+D+ + R++
Sbjct: 684  LFGSSPNYQRLRVFGCLCFPWLRPYTRNKLEERSKRCVFLGYSLTQTAYLCLDVDNNRLY 743

Query: 2341 ISRHVVFDEGNFPFIV----QAQSN-PTFPRDLTASFPVIQ-LPATIFHDSPHPLDSHDQ 2502
             SRHV+FDE  +PF      Q+QS+  T P   ++S P     P ++      P  S + 
Sbjct: 744  TSRHVMFDESTYPFAASIREQSQSSLVTPPESSSSSSPANSGFPCSVLRLQSPPASSPET 803

Query: 2503 PSTPTQPANFGALSPPNQTANQSP 2574
            PS P Q  N   +S P QT + +P
Sbjct: 804  PS-PPQQQNDSPVS-PRQTGSPTP 825



 Score =  235 bits (600), Expect = 1e-58
 Identities = 111/206 (53%), Positives = 147/206 (71%)
 Frame = +3

Query: 2811 PLFHEPNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATPTMNIVACRWVFKVKRNAD 2990
            P   EPN+ TQA K   W  AM++E+DA  +NHTW LVP  PT ++V CRWVFK+K   +
Sbjct: 945  PHLSEPNTVTQALKDKKWRFAMSDEFDAQQRNHTWDLVPPNPTQHLVGCRWVFKLKYLPN 1004

Query: 2991 GSLERHKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKLDVRNVFL 3170
            G ++++KARLVAKG++QQ G+DY ETFSPV+K +TI ++L +AV + W LK+LDV N FL
Sbjct: 1005 GLIDKYKARLVAKGFNQQYGVDYAETFSPVIKATTIRVVLDVAVKKNWPLKQLDVNNAFL 1064

Query: 3171 NGVLHEDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQGFSNSQC 3350
             G L E+VYM QPPGF D  +   VC+L  A+YGLKQAPR+WY  L+  L+  GF NS  
Sbjct: 1065 QGTLTEEVYMAQPPGFVDKDRPSHVCRLRKAIYGLKQAPRAWYMELKQHLLNIGFVNSLA 1124

Query: 3351 DSSLFIRRSSASILVVLIYVDDLTVT 3428
            D+SLFI     ++L +L+YVDD+ VT
Sbjct: 1125 DTSLFIYSHGTTLLYLLVYVDDIIVT 1150



 Score = 92.8 bits (229), Expect = 1e-15
 Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 4/185 (2%)
 Frame = +1

Query: 169 TPMERNTYLCWRSQFENILELHDLKELVSSSHSCPEAKLSDGR---DNPAHSSWKKTDKL 339
           T +    YL W  Q   +L+ +DL   + +S   P    +       NP+ + WK+ DKL
Sbjct: 31  TKLTSTNYLMWSIQIHALLDGYDLAGYLDNSVVIPPETTTINSVVSANPSFTLWKRQDKL 90

Query: 340 VLSWLRATVSPSIQSLVLSCSTSLQAWSLLERRLSPVSKTHVRTLRDQLWSLKKDSDKPV 519
           + S L   +SP++QSLV   + S Q WS L    +  S  H++ LR Q+  L K + K +
Sbjct: 91  IFSALIGAISPAVQSLVSRATNSSQIWSTLNNTYAKPSYGHIKQLRQQIQRLTKGT-KTI 149

Query: 520 ADYLLHAETLADSLAAAGTPLPDSDLIEYIIDGLGHDYKEFVTSLHLRQAT-TFDEFYDL 696
            +Y+    T  D LA  G P+   + +E+I+ GL  +YK  V  +  +  T T  E ++ 
Sbjct: 150 DEYVQSHTTRLDQLAILGKPMEHEEQVEHILKGLPEEYKTVVDQIEGKDNTPTITEIHER 209

Query: 697 VIQEE 711
           +I  E
Sbjct: 210 LINHE 214


>gb|AAC02664.1| polyprotein [Arabidopsis thaliana]
          Length = 1451

 Score =  248 bits (634), Expect(2) = 4e-84
 Identities = 151/395 (38%), Positives = 201/395 (50%), Gaps = 18/395 (4%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAYT-----------AEYNPPMSAFSSMDLMNPIWCLDYGA 1139
            CQIC+ +GH+AR C + Q  A +           A + P  +  S+    +  W LD GA
Sbjct: 280  CQICSVHGHSARRCPQLQQHAGSYASNQSSSASYAPWQPRANMVSATPYNSGNWLLDSGA 339

Query: 1140 THHMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIK 1319
            THH+T   + L   QPY G   +T+ +GS LP               LAL  VL +P I+
Sbjct: 340  THHLTSNLNNLALHQPYNGDEEVTIADGSGLPISHSGSALLPTPTRSLALKDVLYVPDIQ 399

Query: 1320 KKFLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFYH------LQTSSFPS 1481
            K  +S+ R    N    E   A F VKD  TG  LL G +K+  Y       + TS F S
Sbjct: 400  KNLISVYRMCNTNGVSVEFFPAHFQVKDLSTGARLLQGKTKNELYEWPVNSSIATSMFAS 459

Query: 1482 GSQLFFGARTNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLP 1661
             +      +T+   WHARLGHPS  I   L  K+ LPI   L +   C  C I KS KLP
Sbjct: 460  PT-----PKTDLPSWHARLGHPSLPILKALISKFSLPISHSLQNQLLCSDCSINKSHKLP 514

Query: 1662 FSDRDSCTKTPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTF 1841
            F      +  PLE L+ D+W  SP++S   Y+YYL I+D YTRY W YPL + S     F
Sbjct: 515  FYSNTIASSHPLEYLYTDVW-TSPITSIDNYKYYLVIVDHYTRYTWLYPLRKKSQVREMF 573

Query: 1842 VFFKK-NDRKFSFSFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKH 2018
            + F    + KF F     + +     I  +  SFL  +GI H  + P T + NGI+ERKH
Sbjct: 574  ITFTALVENKFKFKIGTLYSDNGGEFI--AMRSFLASHGISHMTTPPHTPELNGISERKH 631

Query: 2019 RHIVGMGLYLLSQSALPSKYWVEAFSTTVFLINHL 2123
            RHIV  GL LLS +++P +YW  AF+T V+LIN +
Sbjct: 632  RHIVETGLTLLSTASMPKEYWSYAFATAVYLINRM 666



 Score = 93.6 bits (231), Expect(2) = 4e-84
 Identities = 62/168 (36%), Positives = 83/168 (49%), Gaps = 15/168 (8%)
 Frame = +1

Query: 2161 VIGKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIF 2340
            + G+ P+Y  LRIFGC CFP+L PY + KL  +S  CV L Y  S   Y C+D ++GR++
Sbjct: 680  LFGQPPNYLKLRIFGCLCFPWLRPYTAHKLDNRSVPCVLLGYSLSQSAYLCLDRATGRVY 739

Query: 2341 ISRHVVFDEGNFPF-----IVQAQSNPTFPRDL-TASFPVIQLPATIFHDS------PHP 2484
             SRHV F E +FPF      V   S+P   +D    S P++  P T    S      PH 
Sbjct: 740  TSRHVQFAESSFPFSTTSPSVTPPSDPPLSQDTRPVSVPLLARPLTTAPPSSPSCSAPHR 799

Query: 2485 LDSHDQ---PSTPTQPANFGALSPPNQTANQSPVFGDISLPHITSSNG 2619
              S  +   P  P QP+   +LSP +     SP   + SL    S  G
Sbjct: 800  SPSQSENLSPPAPLQPSL--SLSPTSPIT--SPSLSEESLVGHNSETG 843



 Score =  216 bits (551), Expect = 5e-53
 Identities = 101/201 (50%), Positives = 141/201 (70%)
 Frame = +3

Query: 2826 PNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATPTMNIVACRWVFKVKRNADGSLER 3005
            P +  +A    +W QAM +E +A  +N T+ LVP  P  N+V C+WVF +K  ++G L+R
Sbjct: 942  PKTVVEALLDPNWRQAMCDEINAQTRNGTFDLVPPAPNQNVVGCKWVFTLKYLSNGVLDR 1001

Query: 3006 HKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKLDVRNVFLNGVLH 3185
            +KARLVAKG+ QQ G D+ ETFSPV+K +T+  +L +AVS+ W ++++DV N FL G L 
Sbjct: 1002 YKARLVAKGFHQQYGHDFKETFSPVIKSTTVRSVLHIAVSKGWSIRQIDVNNAFLQGTLS 1061

Query: 3186 EDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQGFSNSQCDSSLF 3365
            ++VY+ QPPGF D      VC+L+ ALYGLKQAPR+WY  LR++L+ QGF NS  D+SLF
Sbjct: 1062 DEVYVTQPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVNSVADTSLF 1121

Query: 3366 IRRSSASILVVLIYVDDLTVT 3428
              R   +IL VL+YVDD+ +T
Sbjct: 1122 TLRHERTILYVLVYVDDMLIT 1142



 Score = 72.4 bits (176), Expect = 1e-09
 Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 4/170 (2%)
 Frame = +1

Query: 169 TPMERNTYLCWRSQFENILELHDLKELVSSSHSCPEAK--LSDG--RDNPAHSSWKKTDK 336
           T +  + ++ W  Q   +L+ +DL   V  S   P      +DG    N  ++ WK+ DK
Sbjct: 30  TRLTDSNFVMWSRQVHALLDGYDLAGYVDGSIPIPTPTRTTADGVVTTNNDYTLWKRQDK 89

Query: 337 LVLSWLRATVSPSIQSLVLSCSTSLQAWSLLERRLSPVSKTHVRTLRDQLWSLKKDSDKP 516
           L+ S L   +S S+Q L+   +TS + W  L    +  S  HV+ LR QL    K + K 
Sbjct: 90  LIYSALLGAISLSVQPLLSKANTSAEIWETLSSTFANPSWAHVQQLRQQLKQWTKGT-KS 148

Query: 517 VADYLLHAETLADSLAAAGTPLPDSDLIEYIIDGLGHDYKEFVTSLHLRQ 666
           +  Y     T  D LA  G      + IE I+ GL  DYK  V  +  R+
Sbjct: 149 IVTYFQGFTTRFDHLALLGKAPEREEQIELILGGLPEDYKTVVDQIEGRE 198


>gb|AAC02666.1| polyprotein [Arabidopsis thaliana]
          Length = 1451

 Score =  248 bits (633), Expect(2) = 5e-84
 Identities = 151/395 (38%), Positives = 201/395 (50%), Gaps = 18/395 (4%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAYT-----------AEYNPPMSAFSSMDLMNPIWCLDYGA 1139
            CQIC+ +GH+AR C + Q  A +           A + P  +  S+    +  W LD GA
Sbjct: 280  CQICSVHGHSARRCPQLQQHAGSYASNQSSSASYAPWQPRANMVSATPYNSGNWLLDSGA 339

Query: 1140 THHMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIK 1319
            THH+T   + L   QPY G   +T+ +GS LP               LAL  VL +P I+
Sbjct: 340  THHLTSDLNNLALHQPYNGDEEVTIADGSGLPISHSGSALLPTPTRSLALKDVLYVPDIQ 399

Query: 1320 KKFLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFYH------LQTSSFPS 1481
            K  +S+ R    N    E   A F VKD  TG  LL G +K+  Y       + TS F S
Sbjct: 400  KNLISVYRMCNTNGVSVEFFPAHFQVKDLSTGARLLQGKTKNELYEWPVNSSIATSMFAS 459

Query: 1482 GSQLFFGARTNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLP 1661
             +      +T+   WHARLGHPS  I   L  K+ LPI   L +   C  C I KS KLP
Sbjct: 460  PT-----PKTDLPSWHARLGHPSLPILKALISKFSLPISHSLQNQLLCSDCSINKSHKLP 514

Query: 1662 FSDRDSCTKTPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTF 1841
            F      +  PLE L+ D+W  SP++S   Y+YYL I+D YTRY W YPL + S     F
Sbjct: 515  FYSNTIASSHPLEYLYTDVW-TSPITSIDNYKYYLVIVDHYTRYTWLYPLRKKSQVREMF 573

Query: 1842 VFFKK-NDRKFSFSFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKH 2018
            + F    + KF F     + +     I  +  SFL  +GI H  + P T + NGI+ERKH
Sbjct: 574  ITFTALVENKFKFKIGTLYSDNGGEFI--AMRSFLASHGISHMTTPPHTPELNGISERKH 631

Query: 2019 RHIVGMGLYLLSQSALPSKYWVEAFSTTVFLINHL 2123
            RHIV  GL LLS +++P +YW  AF+T V+LIN +
Sbjct: 632  RHIVETGLTLLSTASMPKEYWSYAFATAVYLINRM 666



 Score = 93.6 bits (231), Expect(2) = 5e-84
 Identities = 62/168 (36%), Positives = 83/168 (49%), Gaps = 15/168 (8%)
 Frame = +1

Query: 2161 VIGKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIF 2340
            + G+ P+Y  LRIFGC CFP+L PY + KL  +S  CV L Y  S   Y C+D ++GR++
Sbjct: 680  LFGQPPNYLKLRIFGCLCFPWLRPYTAHKLDNRSVPCVLLGYSLSQSAYLCLDRATGRVY 739

Query: 2341 ISRHVVFDEGNFPF-----IVQAQSNPTFPRDL-TASFPVIQLPATIFHDS------PHP 2484
             SRHV F E +FPF      V   S+P   +D    S P++  P T    S      PH 
Sbjct: 740  TSRHVQFAESSFPFSTTSPSVTPPSDPPLSQDTRPVSVPLLARPLTTAPPSSPSCSAPHR 799

Query: 2485 LDSHDQ---PSTPTQPANFGALSPPNQTANQSPVFGDISLPHITSSNG 2619
              S  +   P  P QP+   +LSP +     SP   + SL    S  G
Sbjct: 800  SPSQSENLSPPAPLQPSL--SLSPTSPIT--SPSLSEESLVGHNSETG 843



 Score =  216 bits (551), Expect = 5e-53
 Identities = 101/201 (50%), Positives = 141/201 (70%)
 Frame = +3

Query: 2826 PNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATPTMNIVACRWVFKVKRNADGSLER 3005
            P +  +A    +W QAM +E +A  +N T+ LVP  P  N+V C+WVF +K  ++G L+R
Sbjct: 942  PKTVVEALLDPNWRQAMCDEINAQTRNGTFDLVPPAPNQNVVGCKWVFTLKYLSNGVLDR 1001

Query: 3006 HKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKLDVRNVFLNGVLH 3185
            +KARLVAKG+ QQ G D+ ETFSPV+K +T+  +L +AVS+ W ++++DV N FL G L 
Sbjct: 1002 YKARLVAKGFHQQYGHDFKETFSPVIKSTTVRSVLHIAVSKGWSIRQIDVNNAFLQGTLS 1061

Query: 3186 EDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQGFSNSQCDSSLF 3365
            ++VY+ QPPGF D      VC+L+ ALYGLKQAPR+WY  LR++L+ QGF NS  D+SLF
Sbjct: 1062 DEVYVTQPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVNSVADTSLF 1121

Query: 3366 IRRSSASILVVLIYVDDLTVT 3428
              R   +IL VL+YVDD+ +T
Sbjct: 1122 TLRHERTILYVLVYVDDMLIT 1142



 Score = 72.0 bits (175), Expect = 2e-09
 Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 4/170 (2%)
 Frame = +1

Query: 169 TPMERNTYLCWRSQFENILELHDLKELVSSSHSCPEAK--LSDG--RDNPAHSSWKKTDK 336
           T +  + ++ W  Q   +L+ +DL   +  S   P      +DG    N  ++ WK+ DK
Sbjct: 30  TRLTDSNFVMWSRQVHALLDGYDLAGYIDGSIPIPTPTRTTADGVVTTNNDYTLWKRQDK 89

Query: 337 LVLSWLRATVSPSIQSLVLSCSTSLQAWSLLERRLSPVSKTHVRTLRDQLWSLKKDSDKP 516
           L+ S L   +S S+Q L+   +TS + W  L    +  S  HV+ LR QL    K + K 
Sbjct: 90  LIYSALLGAISLSVQPLLSKANTSAEIWETLSSTFANPSWAHVQQLRQQLKQWTKGT-KS 148

Query: 517 VADYLLHAETLADSLAAAGTPLPDSDLIEYIIDGLGHDYKEFVTSLHLRQ 666
           +  Y     T  D LA  G      + IE I+ GL  DYK  V  +  R+
Sbjct: 149 IVTYFQGFTTRFDHLALLGKAPEREEQIELILGGLPEDYKTVVDQIEGRE 198


>gb|AAC02669.1| polyprotein [Arabidopsis thaliana]
          Length = 1451

 Score =  248 bits (633), Expect(2) = 5e-84
 Identities = 151/395 (38%), Positives = 201/395 (50%), Gaps = 18/395 (4%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAYT-----------AEYNPPMSAFSSMDLMNPIWCLDYGA 1139
            CQIC+ +GH+AR C + Q  A +           A + P  +  S+    +  W LD GA
Sbjct: 280  CQICSVHGHSARRCPQLQQHAGSYASNQSSSASYAPWQPRANMVSATPYNSGNWLLDSGA 339

Query: 1140 THHMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIK 1319
            THH+T   + L   QPY G   +T+ +GS LP               LAL  VL +P I+
Sbjct: 340  THHLTSDLNNLALHQPYNGDEEVTIADGSGLPISHSGSALLPTPTRSLALKDVLYVPDIQ 399

Query: 1320 KKFLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFYH------LQTSSFPS 1481
            K  +S+ R    N    E   A F VKD  TG  LL G +K+  Y       + TS F S
Sbjct: 400  KNLISVYRMCNTNGVSVEFFPAHFQVKDLSTGARLLQGKTKNELYEWPVNSSIATSMFAS 459

Query: 1482 GSQLFFGARTNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLP 1661
             +      +T+   WHARLGHPS  I   L  K+ LPI   L +   C  C I KS KLP
Sbjct: 460  PT-----PKTDLPSWHARLGHPSLPILKALISKFSLPISHSLQNQLLCSDCSINKSHKLP 514

Query: 1662 FSDRDSCTKTPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTF 1841
            F      +  PLE L+ D+W  SP++S   Y+YYL I+D YTRY W YPL + S     F
Sbjct: 515  FYSNTIASSHPLEYLYTDVW-TSPITSIDNYKYYLVIVDHYTRYTWLYPLRKKSQVREMF 573

Query: 1842 VFFKK-NDRKFSFSFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKH 2018
            + F    + KF F     + +     I  +  SFL  +GI H  + P T + NGI+ERKH
Sbjct: 574  ITFTALVENKFKFKIGTLYSDNGGEFI--AMRSFLASHGISHMTTPPHTPELNGISERKH 631

Query: 2019 RHIVGMGLYLLSQSALPSKYWVEAFSTTVFLINHL 2123
            RHIV  GL LLS +++P +YW  AF+T V+LIN +
Sbjct: 632  RHIVETGLTLLSTASMPKEYWSYAFATAVYLINRM 666



 Score = 93.6 bits (231), Expect(2) = 5e-84
 Identities = 62/168 (36%), Positives = 83/168 (49%), Gaps = 15/168 (8%)
 Frame = +1

Query: 2161 VIGKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIF 2340
            + G+ P+Y  LRIFGC CFP+L PY + KL  +S  CV L Y  S   Y C+D ++GR++
Sbjct: 680  LFGQPPNYLKLRIFGCLCFPWLRPYTAHKLDNRSVPCVLLGYSLSQSAYLCLDRATGRVY 739

Query: 2341 ISRHVVFDEGNFPF-----IVQAQSNPTFPRDL-TASFPVIQLPATIFHDS------PHP 2484
             SRHV F E +FPF      V   S+P   +D    S P++  P T    S      PH 
Sbjct: 740  TSRHVQFAESSFPFSTTSPSVTPPSDPPLSQDTRPVSVPLLARPLTTAPPSSPSCSAPHR 799

Query: 2485 LDSHDQ---PSTPTQPANFGALSPPNQTANQSPVFGDISLPHITSSNG 2619
              S  +   P  P QP+   +LSP +     SP   + SL    S  G
Sbjct: 800  SPSQSENLSPPAPLQPSL--SLSPTSPIT--SPSLSEESLVGHNSETG 843



 Score =  216 bits (549), Expect = 8e-53
 Identities = 101/201 (50%), Positives = 141/201 (70%)
 Frame = +3

Query: 2826 PNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATPTMNIVACRWVFKVKRNADGSLER 3005
            P +  +A    +W QAM +E +A  +N T+ LVP  P  N+V C+WVF +K  ++G L+R
Sbjct: 942  PKTVVEALLDPNWRQAMCDEINAQTRNGTFDLVPPAPNQNVVGCKWVFTLKYLSNGVLDR 1001

Query: 3006 HKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKLDVRNVFLNGVLH 3185
            +KARLVAKG+ QQ G D+ ETFSPV+K +T+  +L +AVS+ W ++++DV N FL G L 
Sbjct: 1002 YKARLVAKGFHQQYGHDFKETFSPVIKLTTVRSVLHIAVSKGWSIRQIDVNNAFLQGTLS 1061

Query: 3186 EDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQGFSNSQCDSSLF 3365
            ++VY+ QPPGF D      VC+L+ ALYGLKQAPR+WY  LR++L+ QGF NS  D+SLF
Sbjct: 1062 DEVYVTQPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVNSVADTSLF 1121

Query: 3366 IRRSSASILVVLIYVDDLTVT 3428
              R   +IL VL+YVDD+ +T
Sbjct: 1122 TLRHERTILYVLVYVDDMLIT 1142



 Score = 72.4 bits (176), Expect = 1e-09
 Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 4/170 (2%)
 Frame = +1

Query: 169 TPMERNTYLCWRSQFENILELHDLKELVSSSHSCPEAK--LSDG--RDNPAHSSWKKTDK 336
           T +  + ++ W  Q   +L+ +DL   V  S   P      +DG    N  ++ WK+ DK
Sbjct: 30  TRLTDSNFVMWSRQVHALLDGYDLAGYVDGSIPIPTPTRTTADGVVTTNNDYTLWKRQDK 89

Query: 337 LVLSWLRATVSPSIQSLVLSCSTSLQAWSLLERRLSPVSKTHVRTLRDQLWSLKKDSDKP 516
           L+ S L   +S S+Q L+   +TS + W  L    +  S  HV+ LR QL    K + K 
Sbjct: 90  LIYSALLGAISLSVQPLLSKANTSAEIWETLSSTFANPSWAHVQQLRQQLKQWTKGT-KS 148

Query: 517 VADYLLHAETLADSLAAAGTPLPDSDLIEYIIDGLGHDYKEFVTSLHLRQ 666
           +  Y     T  D LA  G      + IE I+ GL  DYK  V  +  R+
Sbjct: 149 IVTYFQGFTTRFDHLALLGKAPEREEQIELILGGLPEDYKTVVDQIEGRE 198


>gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1149

 Score =  241 bits (615), Expect(2) = 4e-82
 Identities = 146/389 (37%), Positives = 201/389 (51%), Gaps = 11/389 (2%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAYTAEYNPPMSAFSSMDLMNPI----WCLDYGATHHMTPT 1160
            CQIC K GH A  C    + +Y        +AFS++ + +      W  D  AT H+T  
Sbjct: 269  CQICGKRGHYALQCWHRFDDSYQHS-EAAAAAFSALHITDVSDDSGWVPDSAATAHITNN 327

Query: 1161 TDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIKKKFLSIQ 1340
            +  L Q+QPY G +T+   +G+ LP               L L  VL  P I K  LS+ 
Sbjct: 328  SSRLQQMQPYLGNDTVMASDGNFLPITHIGSANLPSTSGNLPLKDVLVCPNIAKSLLSVS 387

Query: 1341 RFSRDNDCVFELDSADFSVKDKRTGKILLNGNS-KDGFYHLQTSSFPSGSQLFFGAR--- 1508
            + ++D  C F  D+    VKDK T K+L  G+S  +G Y L+   F    Q+F+  R   
Sbjct: 388  KLTKDYPCSFTFDADGVLVKDKATCKVLTKGSSTSEGLYKLENPKF----QMFYSTRQVK 443

Query: 1509 TNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLPFSDRDSCTK 1688
               ++WH RLGHP+  +  +L  K  + I     ++K C  C +GKS +LPF   D    
Sbjct: 444  ATDEVWHMRLGHPNPQVLQLLANKKAIQINKS--TSKMCESCRLGKSSRLPFIASDFIAS 501

Query: 1689 TPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTFVFFK---KN 1859
             PLE +H DLWGP+PVSS  G++YY+  ID+ +R+ WFYPL   S+  S F+ F+   +N
Sbjct: 502  RPLERVHCDLWGPAPVSSIQGFQYYVIFIDNRSRFCWFYPLKHKSDFCSLFMKFQSFVEN 561

Query: 1860 DRKFSFSFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKHRHIVGMG 2039
              +      Q      +      F   LQE+GI H ISCP T Q NG+AERKHR +   G
Sbjct: 562  LLQTKIGTFQSDGGGEF--TSNRFLQHLQESGIQHYISCPHTPQQNGLAERKHRQLTERG 619

Query: 2040 LYLLSQSALPSKYWVEAFSTTVFLINHLP 2126
            L L+ QS  P ++WVEAF T  FL N LP
Sbjct: 620  LTLMFQSKAPQRFWVEAFFTANFLSNLLP 648



 Score = 94.4 bits (233), Expect(2) = 4e-82
 Identities = 59/161 (36%), Positives = 76/161 (47%), Gaps = 4/161 (2%)
 Frame = +1

Query: 2161 VIGKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIF 2340
            + GK PDY  LR FGC CFP L  Y   K   +S KC+FL Y   +KGYRC    + R++
Sbjct: 662  LFGKAPDYSALRTFGCACFPTLRAYARNKFDPRSLKCIFLGYTEKYKGYRCFFPPTNRVY 721

Query: 2341 ISRHVVFDEGNFPFIVQAQS----NPTFPRDLTASFPVIQLPATIFHDSPHPLDSHDQPS 2508
            +SRHV+FDE +FPFI    S    +PT         P+       F  S  PL+ +DQ  
Sbjct: 722  LSRHVLFDESSFPFIDTYTSLQHPSPT---------PMFDAWLKSFPSSSSPLE-NDQ-- 769

Query: 2509 TPTQPANFGALSPPNQTANQSPVFGDISLPHITSSNGQALV 2631
              T   N GA  P        P+      P+I    G+  V
Sbjct: 770  --TAGFNSGASVPVITAQQTQPILSLKDGPNILLPEGEITV 808



 Score =  166 bits (420), Expect = 7e-38
 Identities = 83/168 (49%), Positives = 116/168 (69%)
 Frame = +3

Query: 2970 KVKRNADGSLERHKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKL 3149
            +VK N DGSL+++KARLVA+G+ Q+EG+DY ET+SPVV+ +T+  +L L+    W LK++
Sbjct: 902  RVKLNVDGSLDKYKARLVAQGFKQEEGIDYLETYSPVVRSATVRAVLHLSTIMNWELKQM 961

Query: 3150 DVRNVFLNGVLHEDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQ 3329
            DV+N FL+G L E VYM+QP GF D      VC LH ALYGLKQAPR+W+     FL++ 
Sbjct: 962  DVKNGFLHGDLTETVYMKQPAGFIDKAHPDHVCLLHKALYGLKQAPRAWFDKFSKFLLSF 1021

Query: 3330 GFSNSQCDSSLFIRRSSASILVVLIYVDDLTVTIRSL*ISLLLGCVLS 3473
            GF  S  D SLF+   +  ++++L+YVDD+ +T  S   S LL  +LS
Sbjct: 1022 GFVCSMSDPSLFVCVKNKDVIMLLLYVDDMVITGNS---SKLLSSLLS 1066



 Score = 82.0 bits (201), Expect = 2e-12
 Identities = 49/167 (29%), Positives = 91/167 (54%), Gaps = 8/167 (4%)
 Frame = +1

Query: 178 ERNTYLCWRSQFENILELHDLKELVSSSHSCPEAKLSDGRD--------NPAHSSWKKTD 333
           +RN Y+ W+SQFE+ L    L   V+ +++ P   +S  +D        NP + +W ++D
Sbjct: 25  DRN-YILWKSQFESFLSGQGLLGFVNGAYAAPTGTVSGPQDAGVTEAIPNPDYQAWFRSD 83

Query: 334 KLVLSWLRATVSPSIQSLVLSCSTSLQAWSLLERRLSPVSKTHVRTLRDQLWSLKKDSDK 513
           ++V+S         I S+V+   TS + W  L +  + +S + +  L+ +L SL K+  K
Sbjct: 84  QVVMS-------EDILSVVVGSKTSHEVWMNLAKHFNRISSSRIFELQRRLHSLSKEG-K 135

Query: 514 PVADYLLHAETLADSLAAAGTPLPDSDLIEYIIDGLGHDYKEFVTSL 654
            + +YL + +T+ D LA+ G+P+ +   I  ++ GL  +Y+  +TSL
Sbjct: 136 TMEEYLRYLKTICDQLASVGSPVAEKMKIFAMVHGLTREYEPLITSL 182


>gb|AAC02672.1| polyprotein [Arabidopsis arenosa]
          Length = 1390

 Score =  241 bits (615), Expect(2) = 1e-81
 Identities = 149/395 (37%), Positives = 199/395 (50%), Gaps = 18/395 (4%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAYT-----------AEYNPPMSAFSSMDLMNPIWCLDYGA 1139
            CQIC+ +GH+AR C + Q  A +           A + P  +  S+    +  W LD GA
Sbjct: 280  CQICSVHGHSARRCPQLQQHAGSYASNQSSSSSYAPWQPRANMVSATPYNSGNWLLDSGA 339

Query: 1140 THHMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIK 1319
            THH+T   + L   QPY G   +T+ +GS LP               L L  VL +P I+
Sbjct: 340  THHLTSDLNNLALHQPYNGGEEVTIADGSGLPISHSGSALLPTPTRSLDLKDVLYVPDIQ 399

Query: 1320 KKFLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFYH------LQTSSFPS 1481
            K  +S+ R    N    E   A F VKD  TG  LL G +K+  Y       + TS F S
Sbjct: 400  KNLISVYRMCNTNGVSVEFFPAHFQVKDLSTGARLLQGKTKNELYEWPVNSSIATSMFAS 459

Query: 1482 GSQLFFGARTNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLP 1661
             +      +T+   WHARLGHPS  I   L  K+ LPI   L +   C  C I KS KLP
Sbjct: 460  PT-----PKTDLPSWHARLGHPSLPILKTLISKFSLPISHSLQNQLLCSDCSINKSHKLP 514

Query: 1662 FSDRDSCTKTPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTF 1841
            F      +  PLE L+ D+W  SP++S   Y+YYL I+D YTRY W YPL + S    TF
Sbjct: 515  FYSNTIASSHPLEYLYTDVW-TSPITSIDNYKYYLVIVDHYTRYTWLYPLRQKSQVRETF 573

Query: 1842 VFFKK-NDRKFSFSFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKH 2018
            + F    + KF       + +     I  +  SFL  +GI H  + P T + NGI+ERKH
Sbjct: 574  ITFTALVENKFKSKIGTLYSDNGGEFI--ALRSFLASHGISHMTTPPHTPELNGISERKH 631

Query: 2019 RHIVGMGLYLLSQSALPSKYWVEAFSTTVFLINHL 2123
            RHIV  GL LLS +++  +YW  AF+T V+LIN +
Sbjct: 632  RHIVETGLTLLSTASMSKEYWSYAFTTAVYLINRM 666



 Score = 92.8 bits (229), Expect(2) = 1e-81
 Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 9/161 (5%)
 Frame = +1

Query: 2161 VIGKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIF 2340
            + G+ P+Y  LR+FGC CFP+L PY + KL  +S  CV L Y  S   Y C+D ++GR++
Sbjct: 680  LFGQPPNYLKLRVFGCLCFPWLRPYTAHKLDNRSMPCVLLGYSLSQSAYLCLDRATGRVY 739

Query: 2341 ISRHVVFDEGNFPF-----IVQAQSNPTFPRDL-TASFPVIQLPATIF-HDSPHPLDSHD 2499
             SRHV F E  FPF      V   S+P   +D    S P++  P T     SP     H 
Sbjct: 740  TSRHVQFAESIFPFSTTSPSVTPPSDPPLSQDTRPISVPILARPLTTAPPSSPSCSAPHR 799

Query: 2500 QPSTPTQPANFGALSP--PNQTANQSPVFGDISLPHITSSN 2616
             PS P      G LSP  P Q +  S     I+ P ++  +
Sbjct: 800  SPSQP------GILSPSAPFQPSPPSSPTSPITSPSLSEES 834



 Score =  217 bits (552), Expect = 4e-53
 Identities = 101/201 (50%), Positives = 140/201 (69%)
 Frame = +3

Query: 2826 PNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATPTMNIVACRWVFKVKRNADGSLER 3005
            P +  +A    +W QAM +E +A  +N T+ LVP  P  N++ C+WVF +K   +G L+R
Sbjct: 938  PKTVAEALLDPNWRQAMCDEINAQTRNGTFDLVPPAPNQNVIGCKWVFTLKYLPNGVLDR 997

Query: 3006 HKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKLDVRNVFLNGVLH 3185
            +KARLVAKG+ QQ G D+ ETFSPV+K +T+  +L +AVS+ W ++++DV N FL G L 
Sbjct: 998  YKARLVAKGFHQQYGHDFKETFSPVIKSTTVRSVLHVAVSKGWSIRQIDVNNAFLQGTLS 1057

Query: 3186 EDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQGFSNSQCDSSLF 3365
            ++VY+ QPPGF D      VC+LH ALYGLKQAPR+WY  LR++L+ QGF NS  D+SLF
Sbjct: 1058 DEVYVMQPPGFVDKDNPHHVCRLHKALYGLKQAPRAWYQELRSYLLTQGFVNSIADTSLF 1117

Query: 3366 IRRSSASILVVLIYVDDLTVT 3428
              R   +IL VL+YVDD+ +T
Sbjct: 1118 TLRHKRTILYVLVYVDDMLIT 1138



 Score = 73.9 bits (180), Expect = 5e-10
 Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 4/170 (2%)
 Frame = +1

Query: 169 TPMERNTYLCWRSQFENILELHDLKELVSSSHSCPEAKLS--DG--RDNPAHSSWKKTDK 336
           T +  + ++ W  Q   +L+ +DL   V  S   P    +  DG    N  ++ WK+ DK
Sbjct: 30  TRLTDSNFVMWSRQVHALLDGYDLAGYVDGSVPIPPPTRTTDDGVVTTNNDYTLWKRQDK 89

Query: 337 LVLSWLRATVSPSIQSLVLSCSTSLQAWSLLERRLSPVSKTHVRTLRDQLWSLKKDSDKP 516
           LV S L   +S S+Q L+   +TS + W  L    +  S  HV+ LR QL    K + K 
Sbjct: 90  LVYSALLGAISLSVQPLLSKANTSAEVWETLSSTFANPSWAHVQQLRQQLKQWTKGT-KS 148

Query: 517 VADYLLHAETLADSLAAAGTPLPDSDLIEYIIDGLGHDYKEFVTSLHLRQ 666
           V  Y     T  D LA  G      + IE I+ GL  DYK  V  +  R+
Sbjct: 149 VVTYFQGFTTRFDHLALLGKAPEREEQIELILGGLPEDYKTVVDQIESRE 198


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  224 bits (571), Expect(2) = 1e-81
 Identities = 133/387 (34%), Positives = 193/387 (49%), Gaps = 1/387 (0%)
 Frame = +3

Query: 969  ASTDTTVDCQICNKYGHTARVCTE*QNLAYTAEYNPPMSAFSSMDLMNPIWCLDYGATHH 1148
            A T +   CQ+C++ GHTA  C    +  Y  +     SA +  +  N  W  D GAT H
Sbjct: 274  ADTSSRPRCQVCSRVGHTALNCWYRFDENYVPDQRSANSA-AHQNGSNVPWYTDTGATDH 332

Query: 1149 MTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIKKKF 1328
            +T   D LT    YTGT+ +   NG+ +                L L  VL +P+  K  
Sbjct: 333  ITGDLDRLTMHDKYTGTDQIIAANGTGMTISNIGNAIVPTSSRSLHLRSVLHVPSTHKNL 392

Query: 1329 LSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFYHLQTSSFPSGSQLFFGAR 1508
            +S+ R + DND   E  S+ F +KD++T  +LL+G  +DG Y L           F   R
Sbjct: 393  ISVHRLTNDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDGLYPLPPHPDLRLKHNFSSTR 452

Query: 1509 TNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLPFSDRDSCTK 1688
               + WH RLGHPS +I + +     LP      +   C  C   K+ +LP++   S + 
Sbjct: 453  VPLEHWHKRLGHPSRDIVHRVISNNNLPCLSNNSTTSVCDACLQAKAHQLPYTISMSQSS 512

Query: 1689 TPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTFVFFKKN-DR 1865
             PL L+  D++GP+ + S   Y+YY+S IDDY+++ W Y L   S+ + +F  F+   +R
Sbjct: 513  APLMLIFSDVFGPA-IDSFGRYKYYVSFIDDYSKFTWIYLLRHKSDVYKSFCEFQHLVER 571

Query: 1866 KFSFSFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKHRHIVGMGLY 2045
             F         +  W        +  +  GI H++SCP T Q NG AERKHRHIV +GL 
Sbjct: 572  MFGRKIIAFQSD--WGGEYEKLNAHFKTIGIHHQVSCPHTHQQNGAAERKHRHIVEVGLA 629

Query: 2046 LLSQSALPSKYWVEAFSTTVFLINHLP 2126
            LL+QS++P KYW  AF   V+LIN  P
Sbjct: 630  LLAQSSMPLKYWDHAFLAAVYLINRTP 656



 Score =  109 bits (272), Expect(2) = 1e-81
 Identities = 48/72 (66%), Positives = 56/72 (77%)
 Frame = +1

Query: 2167 GKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIFIS 2346
            G  PDY  LRIFGC C+P L PYN  KLQ +ST+CVFL Y N HKG++C+DIS+GRI+IS
Sbjct: 671  GATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKCLDISTGRIYIS 730

Query: 2347 RHVVFDEGNFPF 2382
            R VVFDE  FPF
Sbjct: 731  RDVVFDEHVFPF 742



 Score =  228 bits (582), Expect = 1e-56
 Identities = 111/202 (54%), Positives = 145/202 (71%)
 Frame = +3

Query: 2823 EPNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATPTMNIVACRWVFKVKRNADGSLE 3002
            EP+S ++A     W  AM  E+ AL KN+TW+LVP   T N++ C+WVFKVK NADGS++
Sbjct: 924  EPSSVSEALADPQWRAAMEAEFQALQKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSID 983

Query: 3003 RHKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKLDVRNVFLNGVL 3182
            R KARLVAKG+ QQ G+DY +TFSPVVK STI L+LSLAVS+KW L++LDV+N FL+G+L
Sbjct: 984  RLKARLVAKGFKQQYGIDYDDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGIL 1043

Query: 3183 HEDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQGFSNSQCDSSL 3362
             E VYM+QPPGF D       C L  +LYGLKQ PR+WY  L   L + GF  S+ D SL
Sbjct: 1044 EETVYMKQPPGFADTTHPNYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSL 1103

Query: 3363 FIRRSSASILVVLIYVDDLTVT 3428
            FI  + ++ + +L+YVDD+ +T
Sbjct: 1104 FIYNAHSTAIYILVYVDDIIIT 1125



 Score = 92.0 bits (227), Expect = 2e-15
 Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 6/169 (3%)
 Frame = +1

Query: 175 MERNTYLCWRSQFENILELHDLKELVSSSHSCPEAKLSDGRD------NPAHSSWKKTDK 336
           + +  YL W++Q    +    L ++++    CP   +SD  D      NPA+  W   D+
Sbjct: 24  LTKGNYLLWKAQVLPAIRAAQLDDILTGVEICPPKTISDASDRTVTVANPAYGRWIARDQ 83

Query: 337 LVLSWLRATVSPSIQSLVLSCSTSLQAWSLLERRLSPVSKTHVRTLRDQLWSLKKDSDKP 516
            VL +L +++S  + S V++CSTS   W+ L    S  S+      R  L + KK +   
Sbjct: 84  AVLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALATTKKGASS- 142

Query: 517 VADYLLHAETLADSLAAAGTPLPDSDLIEYIIDGLGHDYKEFVTSLHLR 663
           VA+Y       AD L AAG PL D + + +++ GL  D+   VT++  R
Sbjct: 143 VAEYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVAR 191


>dbj|BAK41512.1| C-end truncated polyprotein [Arabidopsis thaliana]
          Length = 1048

 Score =  232 bits (591), Expect(2) = 1e-80
 Identities = 139/393 (35%), Positives = 198/393 (50%), Gaps = 15/393 (3%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAYTAEYNPPMSAFS------SMDLMNPI----WCLDYGAT 1142
            CQIC   GH+A+ C++ Q+   +     P S F+      ++ L +P     W LD GAT
Sbjct: 274  CQICGVQGHSAKRCSQLQHFLSSVNSQQPSSPFTPWQPRANLALGSPYSSNNWLLDSGAT 333

Query: 1143 HHMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIKK 1322
            HH+T   + L+  QPYTG + + V +GS +P               L L+ +L +P I K
Sbjct: 334  HHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHK 393

Query: 1323 KFLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFYHLQ-TSSFPSGSQLFF 1499
              +S+ R    N    E   A F VKD  TG  LL G +KD  Y     SS P       
Sbjct: 394  NLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASP 453

Query: 1500 GARTNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLPFSDRDS 1679
             ++     WHARLGHP+ +I N +   Y L + +       C  C I KS K+PFS    
Sbjct: 454  SSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTI 513

Query: 1680 CTKTPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTFVFFKK- 1856
             +  PLE ++ D+W  SP+ S   YRYY+  +D +TRY W YPL + S    TF+ FK  
Sbjct: 514  NSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNL 572

Query: 1857 NDRKFSF---SFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKHRHI 2027
             + +F     +F+  +   +      +   +  ++GI H  S P T + NG++ERKHRHI
Sbjct: 573  LENRFQTRIGTFYSDNGGEFV-----ALREYFSQHGISHLTSPPHTPEHNGLSERKHRHI 627

Query: 2028 VGMGLYLLSQSALPSKYWVEAFSTTVFLINHLP 2126
            V  GL LLS +++P  YW  AF+  V+LIN LP
Sbjct: 628  VETGLTLLSHASIPKTYWPYAFAVAVYLINRLP 660



 Score = 98.6 bits (244), Expect(2) = 1e-80
 Identities = 54/153 (35%), Positives = 75/153 (49%)
 Frame = +1

Query: 2161 VIGKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIF 2340
            + G  P+Y  LR+FGC C+P+L PYN  KL  KS +CVFL Y  +   Y C+ + + RI+
Sbjct: 673  LFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRIY 732

Query: 2341 ISRHVVFDEGNFPFIVQAQSNPTFPRDLTASFPVIQLPATIFHDSPHPLDSHDQPSTPTQ 2520
            ISRHV FDE  FPF     +          S  V     T+   +P P  +   PS+P+ 
Sbjct: 733  ISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPDPHHAATPPSSPSA 792

Query: 2521 PANFGALSPPNQTANQSPVFGDISLPHITSSNG 2619
            P+    +S  N  ++ S  F     P     NG
Sbjct: 793  PSRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNG 825



 Score =  123 bits (308), Expect = 7e-25
 Identities = 58/105 (55%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
 Frame = +3

Query: 2823 EPNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATPT-MNIVACRWVFKVKRNADGSL 2999
            EP +  QA K   W  AM  E +A + NHTW LVP  P+ + IV CRW+F  K N+DGSL
Sbjct: 942  EPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSL 1001

Query: 3000 ERHKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKW 3134
             R+KARLVAKGY+Q+ GLDY ETFSPV+K ++I ++L +AV R W
Sbjct: 1002 NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSW 1046



 Score = 77.4 bits (189), Expect = 4e-11
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
 Frame = +1

Query: 169 TPMERNTYLCWRSQFENILELHDLKELVSSSHSCPEAKLSDG---RDNPAHSSWKKTDKL 339
           T +    YL W  Q   + + ++L   +  S + P A +      R NP ++ WK+ DKL
Sbjct: 24  TKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKL 83

Query: 340 VLSWLRATVSPSIQSLVLSCSTSLQAWSLLERRLSPVSKTHVRTLRDQLWSLKKDSDKPV 519
           + + +   +S S+Q  V   +T+ Q W  L +  +  S  HV  LR QL    K + K +
Sbjct: 84  IYNAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGT-KTI 142

Query: 520 ADYLLHAETLADSLAAAGTPLPDSDLIEYIIDGLGHDYK 636
            DY+    T  D LA  G P+   + +E +++ L  +YK
Sbjct: 143 DDYMQGFVTRFDQLALLGKPMDHDEQVERVLENLPEEYK 181


>dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]
          Length = 1429

 Score =  223 bits (569), Expect(2) = 2e-79
 Identities = 141/402 (35%), Positives = 196/402 (48%), Gaps = 24/402 (5%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAY------------TAEYNP-------PMSAFSSMDLMNP 1115
            CQIC  +GH+AR C++ Q                T  Y+P       P +  ++    NP
Sbjct: 254  CQICGVHGHSARRCSQFQPYGGSGGSQSVPSGYPTNGYSPSPMAPWQPRANIATAPPFNP 313

Query: 1116 IWCLDYGATHHMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNG 1295
             W LD GATHH+T     L+  QPYTG   +T+ +GS LP               LAL  
Sbjct: 314  -WVLDSGATHHLTSDLANLSMHQPYTGGEEVTIADGSGLPISHTGSALLPTPSRSLALKD 372

Query: 1296 VLCIPTIKKKFLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFY----HLQ 1463
            +L +P + K  +S+ R    N    E   A F VKD  TG  LL G +++  Y    + +
Sbjct: 373  ILYVPNVSKNLISVYRLCNANQVSVEFFPAHFQVKDLNTGARLLQGRTRNELYEWPVNQK 432

Query: 1464 TSSFPSGSQLFFGARTNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIG 1643
            + +  + S      +T+   WH RLGHP+  I   +   + LP+ + +     C  C I 
Sbjct: 433  SITILTASP---SPKTDLSSWHQRLGHPALPILKDVVSHFHLPLSNTIPKQLPCSDCSIN 489

Query: 1644 KSCKLPFSDRDSCTKTPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMS 1823
            KS KLPF      +  PLE L+ D+W  SP  S   Y+YYL I+D +TRY W YPL + S
Sbjct: 490  KSHKLPFFTNTIVSSQPLEYLYTDVW-TSPCISVDNYKYYLVIVDHFTRYTWMYPLKQKS 548

Query: 1824 NTFSTFVFFKK-NDRKFSFSFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NG 2000
                 FV FK   + +F       + +     I      FL  +GI H  S P T + NG
Sbjct: 549  QVKDVFVAFKALVENRFQSRIRTLYSDNGGEFI--GLRPFLAAHGISHLTSPPHTPEHNG 606

Query: 2001 IAERKHRHIVGMGLYLLSQSALPSKYWVEAFSTTVFLINHLP 2126
            +AERKHRHIV  GL LL+ ++LP  +W  AF+T V+LIN +P
Sbjct: 607  LAERKHRHIVETGLALLTHASLPKTFWTYAFATAVYLINRMP 648



 Score =  103 bits (256), Expect(2) = 2e-79
 Identities = 57/138 (41%), Positives = 77/138 (55%), Gaps = 11/138 (7%)
 Frame = +1

Query: 2176 PDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIFISRHV 2355
            P+Y  LR+FGC C+P+L PYN+ KL+A+ST CVFL Y  +   Y C+DI++ RI+ SRHV
Sbjct: 666  PNYLKLRVFGCLCYPWLRPYNTNKLEARSTMCVFLGYSLTQSAYLCLDIATNRIYTSRHV 725

Query: 2356 VFDEGNFPFI---------VQAQSNPTFPRDLTASFPVIQLPATIFHDSPHPLDS--HDQ 2502
             F E +FPF           Q  S PT     T   P++Q P  I   +  PL    H  
Sbjct: 726  QFVESSFPFASPRTSETDSTQTMSQPT----TTNVIPLLQRPPHIAPPTALPLCPIFHSP 781

Query: 2503 PSTPTQPANFGALSPPNQ 2556
            P +P+ PA     SPP++
Sbjct: 782  PHSPSSPA-----SPPSE 794



 Score =  224 bits (571), Expect = 2e-55
 Identities = 101/200 (50%), Positives = 142/200 (71%)
 Frame = +3

Query: 2826 PNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATPTMNIVACRWVFKVKRNADGSLER 3005
            P +  QA K  +W  AM+EE +A +KNHTW LV      ++++C+W+F +K N DGS+ R
Sbjct: 921  PTTVAQALKDPNWRNAMSEEINAQMKNHTWDLVSPEEAKHVISCKWIFTLKYNVDGSIAR 980

Query: 3006 HKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKLDVRNVFLNGVLH 3185
            +KARLVA+G++QQ G+DY+ETFSPV+K +TI  +L +AV R W + ++D+ N FL G L+
Sbjct: 981  YKARLVARGFNQQYGIDYSETFSPVIKSTTIRTVLEVAVKRNWSIHQVDINNAFLQGTLN 1040

Query: 3186 EDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQGFSNSQCDSSLF 3365
            E+VY+ QPPGF D  +   VC+L+ ALYGLKQAPR+WY  LR FL+  GF NS  D+SLF
Sbjct: 1041 EEVYVSQPPGFIDRDRPSHVCRLNKALYGLKQAPRAWYQELRRFLLQAGFVNSLADASLF 1100

Query: 3366 IRRSSASILVVLIYVDDLTV 3425
            I     + + VL+YVDD+ +
Sbjct: 1101 IYNRHNTFMYVLVYVDDIII 1120



 Score = 86.3 bits (212), Expect = 1e-13
 Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 4/185 (2%)
 Frame = +1

Query: 169 TPMERNTYLCWRSQFENILELHDLKELVSSSHSCPEAKLSDG---RDNPAHSSWKKTDKL 339
           T +    +L WR Q   +L+ +DL   V  S   P   ++       NP +  WK+ DKL
Sbjct: 5   TKLTSTNFLMWRRQVHALLDGYDLAGYVDGSIEEPHTTVTVHGVTSPNPEYKLWKRQDKL 64

Query: 340 VLSWLRATVSPSIQSLVLSCSTSLQAWSLLERRLSPVSKTHVRTLRDQLWSLKKDSDKPV 519
           + S L   +S ++Q L+   +TS Q W  L    +  S+ H + +R+Q+   KK S + +
Sbjct: 65  IYSGLIGAISVAVQPLLSQATTSAQIWRKLVDTYANPSRGHKQQIREQIKQWKKGS-RSI 123

Query: 520 ADYLLHAETLADSLAAAGTPLPDSDLIEYIIDGLGHDYKEFVTSLHLRQ-ATTFDEFYDL 696
            DY+L   T  D LA     +P  D I YI+ GL  DY+  +  +  R  + +  E ++ 
Sbjct: 124 DDYVLGLTTRFDQLALLEEAIPHEDQIAYILGGLSDDYRRVIDQIEGRDISPSITELHEK 183

Query: 697 VIQEE 711
           +I  E
Sbjct: 184 LINFE 188


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  234 bits (596), Expect(2) = 2e-79
 Identities = 144/422 (34%), Positives = 200/422 (47%), Gaps = 44/422 (10%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAYTAEYN-------------------------PPMSAFSS 1097
            CQ+C + GH    C    + ++T                             P +   ++
Sbjct: 286  CQLCGRIGHVVMQCYYRFDQSFTGPSQLQGNRPQGNMAHLHQQLSEXFFPGTPSVKPTTA 345

Query: 1098 MDLMNPIWCLDYGATHHMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXX 1277
              + +  W  D GATHH+TP  + L     +  ++ + VGNG  LP              
Sbjct: 346  EIIQDNNWYPDSGATHHLTPNLNNLLTKSQFPSSDEVFVGNGKGLPIHHIGHTSFSSSFI 405

Query: 1278 X---LALNGVLCIPTIKKKFLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDG 1448
                LAL  +L +P I K  LS+ +F+ DN   FE       VKD  T  +L++G  K G
Sbjct: 406  PSKTLALKQLLHVPEITKNLLSVSKFAADNHVFFEFHPTSCFVKDPSTRTVLMHGQLKGG 465

Query: 1449 FYHLQ---------------TSSFPSGSQLFFGARTNQ-DMWHARLGHPSHNITNILHKK 1580
             Y                  +++ PS       + T+   +WH RLGHPS +I +++  K
Sbjct: 466  LYVFDNTQLKLPLHNSSCFASTALPSKEPTVPASPTSPFTLWHNRLGHPSSHIVSLVLNK 525

Query: 1581 YKLPIRDKLDSNKFCHVCPIGKSCKLPFSDRDSCTKTPLELLHLDLWGPSPVSSDHGYRY 1760
              LP  +K+ S   C  C +GK  K  F    S    PLEL+H DLWGP+   S HG++Y
Sbjct: 526  CNLPHLNKIPS-LICSXCCMGKIHKSSFLHSTSSYTKPLELIHTDLWGPASTPSSHGHQY 584

Query: 1761 YLSIIDDYTRYVWFYPLARMSNTFSTFVFFKKNDRKFSFSFHQKHPNRWWW*IC*SFTSF 1940
            Y+  ID Y+R+ W Y L   S  F  F+ FK +  +       K     W     SFT +
Sbjct: 585  YIHFIDAYSRFTWIYMLKHKSEAFQVFLHFK-SQVELQLGHKIKAVQSDWGGEYRSFTQY 643

Query: 1941 LQENGIFHRISCPCTSQ*NGIAERKHRHIVGMGLYLLSQSALPSKYWVEAFSTTVFLINH 2120
            L  NGI HRISCP T + NG+AERKHRHIV  G+ LL+Q++LP KYW EAF T+V+LIN 
Sbjct: 644  LTSNGIIHRISCPYTHEQNGLAERKHRHIVEHGIALLAQASLPFKYWDEAFRTSVYLINR 703

Query: 2121 LP 2126
            LP
Sbjct: 704  LP 705



 Score = 92.8 bits (229), Expect(2) = 2e-79
 Identities = 54/136 (39%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
 Frame = +1

Query: 2176 PDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIFISRHV 2355
            P Y  L++FGC C+P L P+N  KLQ +S  C FL Y  +HKGY+C+   +G I ISR V
Sbjct: 723  PSYSXLKVFGCMCYPNLRPFNHHKLQFRSIPCTFLGYSLNHKGYKCLS-PNGNILISRDV 781

Query: 2356 VFDEGNFPFI---VQAQSNPTFPRDLTASFPVIQLPATIFHDSPHPLDSHDQPSTPTQPA 2526
            +FDE  FPF     Q Q   +F    T+      LP  +      P  +    S+PT P+
Sbjct: 782  IFDEXAFPFAQLQSQKQXTSSFSSSXTSLPCQTSLPLMVL-----PSSTSCSTSSPTNPS 836

Query: 2527 NFGALSPPNQTANQSP 2574
             F A S  N  A+Q P
Sbjct: 837  IFPATSNHN-VASQXP 851



 Score =  228 bits (582), Expect = 1e-56
 Identities = 104/207 (50%), Positives = 146/207 (70%)
 Frame = +3

Query: 2808 YPLFHEPNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATPTMNIVACRWVFKVKRNA 2987
            Y +   P S  +A + +HW QAM +EY ALL+N+TW LVP      ++ C+WVFKVK N 
Sbjct: 877  YLISTTPTSVPEALQLSHWKQAMTDEYLALLRNNTWDLVPPPTDRKLIGCKWVFKVKENX 936

Query: 2988 DGSLERHKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKLDVRNVF 3167
            DG++ ++KARLVAKG+ Q  G D+ ETFSPVVKP+TI ++L++A++ +W +++LDV N F
Sbjct: 937  DGTINKYKARLVAKGFHQIAGFDFNETFSPVVKPTTIRIVLTIALNLQWKVRQLDVNNAF 996

Query: 3168 LNGVLHEDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQGFSNSQ 3347
            LNG LHED++M QP GF DP+    VCKL+ +LYGLKQAPR+W+  L   L   GFS+++
Sbjct: 997  LNGDLHEDIFMHQPQGFIDPVNPNYVCKLNKSLYGLKQAPRAWFEKLHQALGILGFSSTK 1056

Query: 3348 CDSSLFIRRSSASILVVLIYVDDLTVT 3428
             D SLFI  +      +L+YVDD+ +T
Sbjct: 1057 SDQSLFINITPTHSTYILVYVDDILIT 1083



 Score = 86.3 bits (212), Expect = 1e-13
 Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 10/193 (5%)
 Frame = +1

Query: 163 FPTP----MERNTYLCWRSQFENILELHDLKELVSSSHSCPEAKLSDGRD-----NPAHS 315
           FP P    ++ + +L  R Q    L  H L+  +S +   P   LS   +     NP   
Sbjct: 15  FPXPVSSKLDNHNFLVXRKQILTTLRGHKLQHFLSETSVLPSEFLSSDDETQNHVNPKFQ 74

Query: 316 SWKKTDKLVLSWLRATVSPSIQSLVLSCSTSLQAWSLLERRLSPVSKTHVRTLRDQLWSL 495
            W++  +L++S L A+++ ++ + +++C TS Q W  LE   +   +  V   + QL + 
Sbjct: 75  DWEQQXQLIMSXLLASITDALLTRMVNCDTSAQVWKTLELYFATQVRAKVTQFKTQLHNT 134

Query: 496 KKDSDKPVADYLLHAETLADSLAAAGTPLPDSDLIEYIIDGLGHDYKEFVTSLHLR-QAT 672
           KK  D  ++DYLL    + D LA  G  +   D I+ I +GL  DY+ F+ S++ R    
Sbjct: 135 KK-GDLSISDYLLKIRNVVDLLALVGHKISVKDHIBAIFEGLPQDYETFIISVNSRLDPY 193

Query: 673 TFDEFYDLVIQEE 711
           T +E   L++ +E
Sbjct: 194 TVEEIEALLLAQE 206


>gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thaliana]
            gi|18265373|dbj|BAB84015.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1466

 Score =  231 bits (589), Expect(2) = 1e-78
 Identities = 139/393 (35%), Positives = 198/393 (50%), Gaps = 15/393 (3%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAYTAEYNPPMSAFS------SMDLMNPI----WCLDYGAT 1142
            CQIC   GH+A+ C++ Q+   +     P S F+      ++ L +P     W LD GAT
Sbjct: 279  CQICGVQGHSAKRCSQLQHFLSSVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLDSGAT 338

Query: 1143 HHMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIKK 1322
            HH+T   + L+  QPYTG + + V +GS +P               L L+ +L +P I K
Sbjct: 339  HHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHK 398

Query: 1323 KFLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFYHLQ-TSSFPSGSQLFF 1499
              +S+ R    N    E   A F VKD  TG  LL G +KD  Y     SS P       
Sbjct: 399  NLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASP 458

Query: 1500 GARTNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLPFSDRDS 1679
             ++     WHARLGHP+ +I N +   Y L + +       C  C I KS K+PFS    
Sbjct: 459  SSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTI 518

Query: 1680 CTKTPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTFVFFKK- 1856
             +  PLE ++ D+W  SP+ S   YRYY+  +D +TRY W YPL + S    TF+ FK  
Sbjct: 519  NSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNL 577

Query: 1857 NDRKFSF---SFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKHRHI 2027
             + +F     +F+  +   +      +   +  ++GI H  S P T + NG++ERKHRHI
Sbjct: 578  LENRFQTRIGTFYSDNGGEFV-----ALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHI 632

Query: 2028 VGMGLYLLSQSALPSKYWVEAFSTTVFLINHLP 2126
            V  GL LLS +++P  YW  AF+  V+LIN LP
Sbjct: 633  VETGLTLLSHASIPKTYWPYAFAVAVYLINRLP 665



 Score = 92.8 bits (229), Expect(2) = 1e-78
 Identities = 58/164 (35%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
 Frame = +1

Query: 2161 VIGKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIF 2340
            + G  P+Y  LR+FGC C+P+L PYN  KL  KS +CVFL Y  +   Y C+ + + R++
Sbjct: 678  LFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLY 737

Query: 2341 ISRHVVFDEGNFPFI--------VQAQ---SNPTFPRDLTASFPVIQLPATIFHDSPHPL 2487
            ISRHV FDE  FPF         VQ Q   S+  +    T       LPA    D  H  
Sbjct: 738  ISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHH-- 795

Query: 2488 DSHDQPSTPTQPANFGALSPPNQTANQSPVFGDISLPHITSSNG 2619
             +   PS+P+ P     +S  N  ++ S  F     P     NG
Sbjct: 796  -AATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNG 838



 Score =  231 bits (589), Expect = 2e-57
 Identities = 111/203 (54%), Positives = 143/203 (70%), Gaps = 1/203 (0%)
 Frame = +3

Query: 2823 EPNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATPT-MNIVACRWVFKVKRNADGSL 2999
            EP +  QA K   W  AM  E +A + NHTW LVP  P+ + IV CRW+F  K N+DGSL
Sbjct: 955  EPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSL 1014

Query: 3000 ERHKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKLDVRNVFLNGV 3179
             R+KARLVAKGY+Q+ GLDY ETFSPV+K ++I ++L +AV R W +++LDV N FL G 
Sbjct: 1015 NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1074

Query: 3180 LHEDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQGFSNSQCDSS 3359
            L +DVYM QPPGF D  +   VCKL  ALYGLKQAPR+WY  LR +L+  GF NS  D+S
Sbjct: 1075 LTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTS 1134

Query: 3360 LFIRRSSASILVVLIYVDDLTVT 3428
            LF+ +   SI+ +L+YVDD+ +T
Sbjct: 1135 LFVLQRGKSIVYMLVYVDDILIT 1157



 Score = 81.6 bits (200), Expect = 2e-12
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 4/185 (2%)
 Frame = +1

Query: 169 TPMERNTYLCWRSQFENILELHDLKELVSSSHSCPEAKLSDG---RDNPAHSSWKKTDKL 339
           T +    YL W  Q   + + ++L   +  S + P A +      R NP ++ WK+ DKL
Sbjct: 24  TKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKL 83

Query: 340 VLSWLRATVSPSIQSLVLSCSTSLQAWSLLERRLSPVSKTHVRTLRDQLWSLKKDSDKPV 519
           + S +   +S S+Q  V   +T+ Q W  L +  +  S  HV  LR QL    K + K +
Sbjct: 84  IYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGT-KTI 142

Query: 520 ADYLLHAETLADSLAAAGTPLPDSDLIEYIIDGLGHDYKEFVTSLHLRQA-TTFDEFYDL 696
            DY+    T  D LA  G P+   + +E +++ L  +YK  +  +  +    T  E ++ 
Sbjct: 143 DDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHER 202

Query: 697 VIQEE 711
           ++  E
Sbjct: 203 LLNHE 207


>dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  231 bits (589), Expect(2) = 1e-78
 Identities = 139/393 (35%), Positives = 198/393 (50%), Gaps = 15/393 (3%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAYTAEYNPPMSAFS------SMDLMNPI----WCLDYGAT 1142
            CQIC   GH+A+ C++ Q+   +     P S F+      ++ L +P     W LD GAT
Sbjct: 279  CQICGVQGHSAKRCSQLQHFLSSVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLDSGAT 338

Query: 1143 HHMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIKK 1322
            HH+T   + L+  QPYTG + + V +GS +P               L L+ +L +P I K
Sbjct: 339  HHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHK 398

Query: 1323 KFLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFYHLQ-TSSFPSGSQLFF 1499
              +S+ R    N    E   A F VKD  TG  LL G +KD  Y     SS P       
Sbjct: 399  NLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASP 458

Query: 1500 GARTNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLPFSDRDS 1679
             ++     WHARLGHP+ +I N +   Y L + +       C  C I KS K+PFS    
Sbjct: 459  SSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTI 518

Query: 1680 CTKTPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTFVFFKK- 1856
             +  PLE ++ D+W  SP+ S   YRYY+  +D +TRY W YPL + S    TF+ FK  
Sbjct: 519  NSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNL 577

Query: 1857 NDRKFSF---SFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKHRHI 2027
             + +F     +F+  +   +      +   +  ++GI H  S P T + NG++ERKHRHI
Sbjct: 578  LENRFQTRIGTFYSDNGGEFV-----ALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHI 632

Query: 2028 VGMGLYLLSQSALPSKYWVEAFSTTVFLINHLP 2126
            V  GL LLS +++P  YW  AF+  V+LIN LP
Sbjct: 633  VETGLTLLSHASIPKTYWPYAFAVAVYLINRLP 665



 Score = 92.8 bits (229), Expect(2) = 1e-78
 Identities = 58/164 (35%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
 Frame = +1

Query: 2161 VIGKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIF 2340
            + G  P+Y  LR+FGC C+P+L PYN  KL  KS +CVFL Y  +   Y C+ + + R++
Sbjct: 678  LFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLY 737

Query: 2341 ISRHVVFDEGNFPFI--------VQAQ---SNPTFPRDLTASFPVIQLPATIFHDSPHPL 2487
            ISRHV FDE  FPF         VQ Q   S+  +    T       LPA    D  H  
Sbjct: 738  ISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHH-- 795

Query: 2488 DSHDQPSTPTQPANFGALSPPNQTANQSPVFGDISLPHITSSNG 2619
             +   PS+P+ P     +S  N  ++ S  F     P     NG
Sbjct: 796  -AATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNG 838



 Score =  229 bits (585), Expect = 5e-57
 Identities = 110/203 (54%), Positives = 142/203 (69%), Gaps = 1/203 (0%)
 Frame = +3

Query: 2823 EPNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATPT-MNIVACRWVFKVKRNADGSL 2999
            EP +  QA K   W  AM  E +A + NHTW LVP  P+ + IV CRW+F  K N+DGSL
Sbjct: 955  EPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSL 1014

Query: 3000 ERHKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKLDVRNVFLNGV 3179
             R+K RLVAKGY+Q+ GLDY ETFSPV+K ++I ++L +AV R W +++LDV N FL G 
Sbjct: 1015 NRYKVRLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1074

Query: 3180 LHEDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQGFSNSQCDSS 3359
            L +DVYM QPPGF D  +   VCKL  ALYGLKQAPR+WY  LR +L+  GF NS  D+S
Sbjct: 1075 LTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTS 1134

Query: 3360 LFIRRSSASILVVLIYVDDLTVT 3428
            LF+ +   SI+ +L+YVDD+ +T
Sbjct: 1135 LFVLQRGKSIVYMLVYVDDILIT 1157



 Score = 81.3 bits (199), Expect = 3e-12
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 4/185 (2%)
 Frame = +1

Query: 169 TPMERNTYLCWRSQFENILELHDLKELVSSSHSCPEAKLSDG---RDNPAHSSWKKTDKL 339
           T +    YL W  Q   + + ++L   +  S + P A +      R NP ++ WK+ DKL
Sbjct: 24  TKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKL 83

Query: 340 VLSWLRATVSPSIQSLVLSCSTSLQAWSLLERRLSPVSKTHVRTLRDQLWSLKKDSDKPV 519
           + S +   +S S+Q  V   +T+ Q W  L +  +  S  HV  LR QL    K + K +
Sbjct: 84  IYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGT-KTI 142

Query: 520 ADYLLHAETLADSLAAAGTPLPDSDLIEYIIDGLGHDYKEFVTSLHLRQA-TTFDEFYDL 696
            DY+    T  D LA  G P+   + +E +++ L  +YK  +  +  +    T  E ++ 
Sbjct: 143 DDYMQGFVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHER 202

Query: 697 VIQEE 711
           ++  E
Sbjct: 203 LLNHE 207


>gb|AAK62793.1|AC027036_14 polyprotein, putative [Arabidopsis thaliana]
            gi|338746561|dbj|BAK41510.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1466

 Score =  231 bits (589), Expect(2) = 1e-78
 Identities = 139/393 (35%), Positives = 198/393 (50%), Gaps = 15/393 (3%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAYTAEYNPPMSAFS------SMDLMNPI----WCLDYGAT 1142
            CQIC   GH+A+ C++ Q+   +     P S F+      ++ L +P     W LD GAT
Sbjct: 279  CQICGVQGHSAKRCSQLQHFLSSVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLDSGAT 338

Query: 1143 HHMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIKK 1322
            HH+T   + L+  QPYTG + + V +GS +P               L L+ +L +P I K
Sbjct: 339  HHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHK 398

Query: 1323 KFLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFYHLQ-TSSFPSGSQLFF 1499
              +S+ R    N    E   A F VKD  TG  LL G +KD  Y     SS P       
Sbjct: 399  NLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASP 458

Query: 1500 GARTNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLPFSDRDS 1679
             ++     WHARLGHP+ +I N +   Y L + +       C  C I KS K+PFS    
Sbjct: 459  SSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTI 518

Query: 1680 CTKTPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTFVFFKK- 1856
             +  PLE ++ D+W  SP+ S   YRYY+  +D +TRY W YPL + S    TF+ FK  
Sbjct: 519  NSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNL 577

Query: 1857 NDRKFSF---SFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKHRHI 2027
             + +F     +F+  +   +      +   +  ++GI H  S P T + NG++ERKHRHI
Sbjct: 578  LENRFQTRIGTFYSDNGGEFV-----ALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHI 632

Query: 2028 VGMGLYLLSQSALPSKYWVEAFSTTVFLINHLP 2126
            V  GL LLS +++P  YW  AF+  V+LIN LP
Sbjct: 633  VETGLTLLSHASIPKTYWPYAFAVAVYLINRLP 665



 Score = 92.8 bits (229), Expect(2) = 1e-78
 Identities = 58/164 (35%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
 Frame = +1

Query: 2161 VIGKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIF 2340
            + G  P+Y  LR+FGC C+P+L PYN  KL  KS +CVFL Y  +   Y C+ + + R++
Sbjct: 678  LFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLY 737

Query: 2341 ISRHVVFDEGNFPFI--------VQAQ---SNPTFPRDLTASFPVIQLPATIFHDSPHPL 2487
            ISRHV FDE  FPF         VQ Q   S+  +    T       LPA    D  H  
Sbjct: 738  ISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHH-- 795

Query: 2488 DSHDQPSTPTQPANFGALSPPNQTANQSPVFGDISLPHITSSNG 2619
             +   PS+P+ P     +S  N  ++ S  F     P     NG
Sbjct: 796  -AATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNG 838



 Score =  229 bits (585), Expect = 5e-57
 Identities = 110/203 (54%), Positives = 142/203 (69%), Gaps = 1/203 (0%)
 Frame = +3

Query: 2823 EPNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATPT-MNIVACRWVFKVKRNADGSL 2999
            EP +  QA K   W  AM  E +A + NHTW LVP  P+ + IV CRW+F  K N+DGSL
Sbjct: 955  EPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSL 1014

Query: 3000 ERHKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKLDVRNVFLNGV 3179
             R+KAR VAKGY+Q+ GLDY ETFSPV+K ++I ++L +AV R W +++LDV N FL G 
Sbjct: 1015 NRYKARFVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1074

Query: 3180 LHEDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQGFSNSQCDSS 3359
            L +DVYM QPPGF D  +   VCKL  ALYGLKQAPR+WY  LR +L+  GF NS  D+S
Sbjct: 1075 LTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTS 1134

Query: 3360 LFIRRSSASILVVLIYVDDLTVT 3428
            LF+ +   SI+ +L+YVDD+ +T
Sbjct: 1135 LFVLQRGKSIVYMLVYVDDILIT 1157



 Score = 81.6 bits (200), Expect = 2e-12
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 4/185 (2%)
 Frame = +1

Query: 169 TPMERNTYLCWRSQFENILELHDLKELVSSSHSCPEAKLSDG---RDNPAHSSWKKTDKL 339
           T +    YL W  Q   + + ++L   +  S + P A +      R NP ++ WK+ DKL
Sbjct: 24  TKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKL 83

Query: 340 VLSWLRATVSPSIQSLVLSCSTSLQAWSLLERRLSPVSKTHVRTLRDQLWSLKKDSDKPV 519
           + S +   +S S+Q  V   +T+ Q W  L +  +  S  HV  LR QL    K + K +
Sbjct: 84  IYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGT-KTI 142

Query: 520 ADYLLHAETLADSLAAAGTPLPDSDLIEYIIDGLGHDYKEFVTSLHLRQA-TTFDEFYDL 696
            DY+    T  D LA  G P+   + +E +++ L  +YK  +  +  +    T  E ++ 
Sbjct: 143 DDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHER 202

Query: 697 VIQEE 711
           ++  E
Sbjct: 203 LLNHE 207


>dbj|BAA87949.1| retrotransposon homolog, partial [Arabidopsis thaliana]
          Length = 847

 Score =  231 bits (589), Expect(2) = 1e-78
 Identities = 139/393 (35%), Positives = 198/393 (50%), Gaps = 15/393 (3%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAYTAEYNPPMSAFS------SMDLMNPI----WCLDYGAT 1142
            CQIC   GH+A+ C++ Q+   +     P S F+      ++ L +P     W LD GAT
Sbjct: 244  CQICGVQGHSAKRCSQLQHFLSSVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLDSGAT 303

Query: 1143 HHMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIKK 1322
            HH+T   + L+  QPYTG + + V +GS +P               L L+ +L +P I K
Sbjct: 304  HHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHK 363

Query: 1323 KFLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFYHLQ-TSSFPSGSQLFF 1499
              +S+ R    N    E   A F VKD  TG  LL G +KD  Y     SS P       
Sbjct: 364  NLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASP 423

Query: 1500 GARTNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLPFSDRDS 1679
             ++     WHARLGHP+ +I N +   Y L + +       C  C I KS K+PFS    
Sbjct: 424  SSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTI 483

Query: 1680 CTKTPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTFVFFKK- 1856
             +  PLE ++ D+W  SP+ S   YRYY+  +D +TRY W YPL + S    TF+ FK  
Sbjct: 484  NSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNL 542

Query: 1857 NDRKFSF---SFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKHRHI 2027
             + +F     +F+  +   +      +   +  ++GI H  S P T + NG++ERKHRHI
Sbjct: 543  LENRFQTRIGTFYSDNGGEFV-----ALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHI 597

Query: 2028 VGMGLYLLSQSALPSKYWVEAFSTTVFLINHLP 2126
            V  GL LLS +++P  YW  AF+  V+LIN LP
Sbjct: 598  VETGLTLLSHASIPKTYWPYAFAVAVYLINRLP 630



 Score = 92.8 bits (229), Expect(2) = 1e-78
 Identities = 58/164 (35%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
 Frame = +1

Query: 2161 VIGKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIF 2340
            + G  P+Y  LR+FGC C+P+L PYN  KL  KS +CVFL Y  +   Y C+ + + R++
Sbjct: 643  LFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLY 702

Query: 2341 ISRHVVFDEGNFPFI--------VQAQ---SNPTFPRDLTASFPVIQLPATIFHDSPHPL 2487
            ISRHV FDE  FPF         VQ Q   S+  +    T       LPA    D  H  
Sbjct: 703  ISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHH-- 760

Query: 2488 DSHDQPSTPTQPANFGALSPPNQTANQSPVFGDISLPHITSSNG 2619
             +   PS+P+ P     +S  N  ++ S  F     P     NG
Sbjct: 761  -AATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNG 803


>dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]
          Length = 1431

 Score =  231 bits (589), Expect(2) = 1e-78
 Identities = 139/393 (35%), Positives = 198/393 (50%), Gaps = 15/393 (3%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAYTAEYNPPMSAFS------SMDLMNPI----WCLDYGAT 1142
            CQIC   GH+A+ C++ Q+   +     P S F+      ++ L +P     W LD GAT
Sbjct: 244  CQICGVQGHSAKRCSQLQHFLSSVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLDSGAT 303

Query: 1143 HHMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIKK 1322
            HH+T   + L+  QPYTG + + V +GS +P               L L+ +L +P I K
Sbjct: 304  HHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHK 363

Query: 1323 KFLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFYHLQ-TSSFPSGSQLFF 1499
              +S+ R    N    E   A F VKD  TG  LL G +KD  Y     SS P       
Sbjct: 364  NLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASP 423

Query: 1500 GARTNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLPFSDRDS 1679
             ++     WHARLGHP+ +I N +   Y L + +       C  C I KS K+PFS    
Sbjct: 424  SSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTI 483

Query: 1680 CTKTPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTFVFFKK- 1856
             +  PLE ++ D+W  SP+ S   YRYY+  +D +TRY W YPL + S    TF+ FK  
Sbjct: 484  NSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNL 542

Query: 1857 NDRKFSF---SFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKHRHI 2027
             + +F     +F+  +   +      +   +  ++GI H  S P T + NG++ERKHRHI
Sbjct: 543  LENRFQTRIGTFYSDNGGEFV-----ALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHI 597

Query: 2028 VGMGLYLLSQSALPSKYWVEAFSTTVFLINHLP 2126
            V  GL LLS +++P  YW  AF+  V+LIN LP
Sbjct: 598  VETGLTLLSHASIPKTYWPYAFAVAVYLINRLP 630



 Score = 92.4 bits (228), Expect(2) = 1e-78
 Identities = 58/164 (35%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
 Frame = +1

Query: 2161 VIGKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIF 2340
            + G  P+Y  LR+FGC C+P+L PYN  KL  KS +CVFL Y  +   Y C+ + + R++
Sbjct: 643  LFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLY 702

Query: 2341 ISRHVVFDEGNFPFI--------VQAQ---SNPTFPRDLTASFPVIQLPATIFHDSPHPL 2487
            ISRHV FDE  FPF         VQ Q   S+  +    T       LPA    D  H  
Sbjct: 703  ISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPGLPAPSGSDPHH-- 760

Query: 2488 DSHDQPSTPTQPANFGALSPPNQTANQSPVFGDISLPHITSSNG 2619
             +   PS+P+ P     +S  N+ +  S  F     P     NG
Sbjct: 761  -AATPPSSPSAPFRNSQVSSSNRESYFSSSFPSSPEPTAPRQNG 803



 Score =  229 bits (585), Expect = 5e-57
 Identities = 110/203 (54%), Positives = 142/203 (69%), Gaps = 1/203 (0%)
 Frame = +3

Query: 2823 EPNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATPT-MNIVACRWVFKVKRNADGSL 2999
            EP +  QA K   W  AM  E +A + NHTW LVP  P+ + IV CRW+F  K N+DGSL
Sbjct: 920  EPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSL 979

Query: 3000 ERHKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKLDVRNVFLNGV 3179
             R+KAR VAKGY+Q+ GLDY ETFSPV+K ++I ++L +AV R W +++LDV N FL G 
Sbjct: 980  NRYKARFVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1039

Query: 3180 LHEDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQGFSNSQCDSS 3359
            L +DVYM QPPGF D  +   VCKL  ALYGLKQAPR+WY  LR +L+  GF NS  D+S
Sbjct: 1040 LTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTS 1099

Query: 3360 LFIRRSSASILVVLIYVDDLTVT 3428
            LF+ +   SI+ +L+YVDD+ +T
Sbjct: 1100 LFVLQRGKSIVYMLVYVDDILIT 1122


>dbj|BAM42647.1| polyprotein [Arabidopsis thaliana] gi|403406144|dbj|BAM42648.1|
            polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score =  232 bits (591), Expect(2) = 2e-78
 Identities = 139/390 (35%), Positives = 196/390 (50%), Gaps = 12/390 (3%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAYTAEYNPPMSAFS------SMDLMNPI----WCLDYGAT 1142
            CQIC+  GH+A+ C +      T       S F+      ++ + +P     W LD GAT
Sbjct: 277  CQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANLAVNSPYNANNWLLDSGAT 336

Query: 1143 HHMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIKK 1322
            HH+T   + L+  QPYTG + + + +GS +P               L LN VL +P I K
Sbjct: 337  HHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHK 396

Query: 1323 KFLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFYHLQTSSFPSGSQLFFG 1502
              +S+ R    N    E   A F VKD  TG  LL G +KD  Y    +S  + S     
Sbjct: 397  NLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASP 456

Query: 1503 -ARTNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLPFSDRDS 1679
             ++     WH+RLGHPS  I N +   + LP+ +       C  C I KS K+PFS+   
Sbjct: 457  CSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTI 516

Query: 1680 CTKTPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTFVFFKK- 1856
             +  PLE ++ D+W  SP+ S   YRYY+  +D +TRY W YPL + S    TF+ FK  
Sbjct: 517  TSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSL 575

Query: 1857 NDRKFSFSFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKHRHIVGM 2036
             + +F       + +     +      +L ++GI H  S P T + NG++ERKHRHIV M
Sbjct: 576  VENRFQTRIGTLYSDNGGEFVV--LRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEM 633

Query: 2037 GLYLLSQSALPSKYWVEAFSTTVFLINHLP 2126
            GL LLS +++P  YW  AFS  V+LIN LP
Sbjct: 634  GLTLLSHASVPKTYWPYAFSVAVYLINRLP 663



 Score = 90.9 bits (224), Expect(2) = 2e-78
 Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 11/130 (8%)
 Frame = +1

Query: 2161 VIGKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIF 2340
            + G+ P+Y  L++FGC C+P+L PYN  KL+ KS +C F+ Y  +   Y C+ I +GR++
Sbjct: 676  LFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLY 735

Query: 2341 ISRHVVFDEGNFPFIV-----------QAQSNPTFPRDLTASFPVIQLPATIFHDSPHPL 2487
             SRHV FDE  FPF             ++ S P +P   T     + LPA      PH  
Sbjct: 736  TSRHVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTPLVLPAPPCL-GPHLD 794

Query: 2488 DSHDQPSTPT 2517
             S   PS+P+
Sbjct: 795  TSPRPPSSPS 804



 Score =  230 bits (587), Expect = 3e-57
 Identities = 109/203 (53%), Positives = 144/203 (70%), Gaps = 1/203 (0%)
 Frame = +3

Query: 2823 EPNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATP-TMNIVACRWVFKVKRNADGSL 2999
            EP +  QA K   W QAM  E +A + NHTW LVP  P ++ IV CRW+F  K N+DGSL
Sbjct: 957  EPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSL 1016

Query: 3000 ERHKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKLDVRNVFLNGV 3179
             R+KARLVAKGY+Q+ GLDY ETFSPV+K ++I ++L +AV R W +++LDV N FL G 
Sbjct: 1017 NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1076

Query: 3180 LHEDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQGFSNSQCDSS 3359
            L ++VYM QPPGF D  +   VC+L  A+YGLKQAPR+WY  LR +L+  GF NS  D+S
Sbjct: 1077 LTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTS 1136

Query: 3360 LFIRRSSASILVVLIYVDDLTVT 3428
            LF+ +   SI+ +L+YVDD+ +T
Sbjct: 1137 LFVLQRGRSIIYMLVYVDDILIT 1159



 Score = 80.5 bits (197), Expect = 5e-12
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 4/185 (2%)
 Frame = +1

Query: 169 TPMERNTYLCWRSQFENILELHDLKELVSSSHSCPEAKLSDG---RDNPAHSSWKKTDKL 339
           T +    YL W  Q   + + ++L   +  S   P A +      R NP ++ W++ DKL
Sbjct: 24  TKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRWRRQDKL 83

Query: 340 VLSWLRATVSPSIQSLVLSCSTSLQAWSLLERRLSPVSKTHVRTLRDQLWSLKKDSDKPV 519
           + S +   +S S+Q  V   +T+ Q W  L +  +  S  HV  LR QL    K + K +
Sbjct: 84  IYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGA-KTI 142

Query: 520 ADYLLHAETLADSLAAAGTPLPDSDLIEYIIDGLGHDYKEFVTSLHLRQA-TTFDEFYDL 696
            DY+    T  D LA  G P+   + +E +++ L  DYK  +  +  +    +  E ++ 
Sbjct: 143 DDYMQGFITRFDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHER 202

Query: 697 VIQEE 711
           +I +E
Sbjct: 203 LINQE 207


>gb|AAC79110.1| putative polyprotein of LTR transposon [Arabidopsis thaliana]
            gi|7269781|emb|CAB77781.1| putative polyprotein of LTR
            transposon [Arabidopsis thaliana]
          Length = 1456

 Score =  232 bits (591), Expect(2) = 2e-78
 Identities = 139/390 (35%), Positives = 196/390 (50%), Gaps = 12/390 (3%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAYTAEYNPPMSAFS------SMDLMNPI----WCLDYGAT 1142
            CQIC+  GH+A+ C +      T       S F+      ++ + +P     W LD GAT
Sbjct: 258  CQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANLAVNSPYNANNWLLDSGAT 317

Query: 1143 HHMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIKK 1322
            HH+T   + L+  QPYTG + + + +GS +P               L LN VL +P I K
Sbjct: 318  HHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHK 377

Query: 1323 KFLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFYHLQTSSFPSGSQLFFG 1502
              +S+ R    N    E   A F VKD  TG  LL G +KD  Y    +S  + S     
Sbjct: 378  NLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASP 437

Query: 1503 -ARTNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLPFSDRDS 1679
             ++     WH+RLGHPS  I N +   + LP+ +       C  C I KS K+PFS+   
Sbjct: 438  CSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTI 497

Query: 1680 CTKTPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTFVFFKK- 1856
             +  PLE ++ D+W  SP+ S   YRYY+  +D +TRY W YPL + S    TF+ FK  
Sbjct: 498  TSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSL 556

Query: 1857 NDRKFSFSFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKHRHIVGM 2036
             + +F       + +     +      +L ++GI H  S P T + NG++ERKHRHIV M
Sbjct: 557  VENRFQTRIGTLYSDNGGEFVV--LRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEM 614

Query: 2037 GLYLLSQSALPSKYWVEAFSTTVFLINHLP 2126
            GL LLS +++P  YW  AFS  V+LIN LP
Sbjct: 615  GLTLLSHASVPKTYWPYAFSVAVYLINRLP 644



 Score = 90.9 bits (224), Expect(2) = 2e-78
 Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 11/130 (8%)
 Frame = +1

Query: 2161 VIGKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIF 2340
            + G+ P+Y  L++FGC C+P+L PYN  KL+ KS +C F+ Y  +   Y C+ I +GR++
Sbjct: 657  LFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLY 716

Query: 2341 ISRHVVFDEGNFPFIV-----------QAQSNPTFPRDLTASFPVIQLPATIFHDSPHPL 2487
             SRHV FDE  FPF             ++ S P +P   T     + LPA      PH  
Sbjct: 717  TSRHVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTPLVLPAPPCL-GPHLD 775

Query: 2488 DSHDQPSTPT 2517
             S   PS+P+
Sbjct: 776  TSPRPPSSPS 785



 Score =  230 bits (587), Expect = 3e-57
 Identities = 109/203 (53%), Positives = 144/203 (70%), Gaps = 1/203 (0%)
 Frame = +3

Query: 2823 EPNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATP-TMNIVACRWVFKVKRNADGSL 2999
            EP +  QA K   W QAM  E +A + NHTW LVP  P ++ IV CRW+F  K N+DGSL
Sbjct: 938  EPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSL 997

Query: 3000 ERHKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKLDVRNVFLNGV 3179
             R+KARLVAKGY+Q+ GLDY ETFSPV+K ++I ++L +AV R W +++LDV N FL G 
Sbjct: 998  NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1057

Query: 3180 LHEDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQGFSNSQCDSS 3359
            L ++VYM QPPGF D  +   VC+L  A+YGLKQAPR+WY  LR +L+  GF NS  D+S
Sbjct: 1058 LTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTS 1117

Query: 3360 LFIRRSSASILVVLIYVDDLTVT 3428
            LF+ +   SI+ +L+YVDD+ +T
Sbjct: 1118 LFVLQRGRSIIYMLVYVDDILIT 1140



 Score = 63.5 bits (153), Expect = 7e-07
 Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
 Frame = +1

Query: 169 TPMERNTYLCWRSQFENILELHDLKELVSSSHSCPEAKLSDG---RDNPAHSSWKKTDKL 339
           T +    YL W  Q   + + ++L   +  S   P A +      R NP ++ W++ DKL
Sbjct: 24  TKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRWRRQDKL 83

Query: 340 VLSWLRATVSPSIQSLVLSCSTSLQAWSLLERRLSPVSKTHVRTLRDQLWSLKKDSDKPV 519
           + S +   +S S+Q  V   +T+ Q W  L +  +  S  HV  LR              
Sbjct: 84  IYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLR-------------- 129

Query: 520 ADYLLHAETLADSLAAAGTPLPDSDLIEYIIDGLGHDYKEFVTSLHLRQA-TTFDEFYDL 696
                   T  D LA  G P+   + +E +++ L  DYK  +  +  +    +  E ++ 
Sbjct: 130 ------FITRFDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHER 183

Query: 697 VIQEE 711
           +I  E
Sbjct: 184 LINRE 188


>dbj|BAA78424.1| polyprotein [Arabidopsis thaliana] gi|404433798|dbj|BAM44533.1|
            polyprotein [Arabidopsis thaliana]
          Length = 1330

 Score =  232 bits (591), Expect(2) = 2e-78
 Identities = 139/390 (35%), Positives = 196/390 (50%), Gaps = 12/390 (3%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAYTAEYNPPMSAFS------SMDLMNPI----WCLDYGAT 1142
            CQIC+  GH+A+ C +      T       S F+      ++ + +P     W LD GAT
Sbjct: 132  CQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANLAVNSPYNANNWLLDSGAT 191

Query: 1143 HHMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIKK 1322
            HH+T   + L+  QPYTG + + + +GS +P               L LN VL +P I K
Sbjct: 192  HHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHK 251

Query: 1323 KFLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFYHLQTSSFPSGSQLFFG 1502
              +S+ R    N    E   A F VKD  TG  LL G +KD  Y    +S  + S     
Sbjct: 252  NLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASP 311

Query: 1503 -ARTNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLPFSDRDS 1679
             ++     WH+RLGHPS  I N +   + LP+ +       C  C I KS K+PFS+   
Sbjct: 312  CSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTI 371

Query: 1680 CTKTPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTFVFFKK- 1856
             +  PLE ++ D+W  SP+ S   YRYY+  +D +TRY W YPL + S    TF+ FK  
Sbjct: 372  TSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSL 430

Query: 1857 NDRKFSFSFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKHRHIVGM 2036
             + +F       + +     +      +L ++GI H  S P T + NG++ERKHRHIV M
Sbjct: 431  VENRFQTRIGTLYSDNGGEFVV--LRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEM 488

Query: 2037 GLYLLSQSALPSKYWVEAFSTTVFLINHLP 2126
            GL LLS +++P  YW  AFS  V+LIN LP
Sbjct: 489  GLTLLSHASVPKTYWPYAFSVAVYLINRLP 518



 Score = 90.9 bits (224), Expect(2) = 2e-78
 Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 11/130 (8%)
 Frame = +1

Query: 2161 VIGKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIF 2340
            + G+ P+Y  L++FGC C+P+L PYN  KL+ KS +C F+ Y  +   Y C+ I +GR++
Sbjct: 531  LFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLY 590

Query: 2341 ISRHVVFDEGNFPFIV-----------QAQSNPTFPRDLTASFPVIQLPATIFHDSPHPL 2487
             SRHV FDE  FPF             ++ S P +P   T     + LPA      PH  
Sbjct: 591  TSRHVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTPLVLPAPPCL-GPHLD 649

Query: 2488 DSHDQPSTPT 2517
             S   PS+P+
Sbjct: 650  TSPRPPSSPS 659



 Score =  230 bits (587), Expect = 3e-57
 Identities = 109/203 (53%), Positives = 144/203 (70%), Gaps = 1/203 (0%)
 Frame = +3

Query: 2823 EPNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATP-TMNIVACRWVFKVKRNADGSL 2999
            EP +  QA K   W QAM  E +A + NHTW LVP  P ++ IV CRW+F  K N+DGSL
Sbjct: 812  EPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSL 871

Query: 3000 ERHKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKLDVRNVFLNGV 3179
             R+KARLVAKGY+Q+ GLDY ETFSPV+K ++I ++L +AV R W +++LDV N FL G 
Sbjct: 872  NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 931

Query: 3180 LHEDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQGFSNSQCDSS 3359
            L ++VYM QPPGF D  +   VC+L  A+YGLKQAPR+WY  LR +L+  GF NS  D+S
Sbjct: 932  LTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTS 991

Query: 3360 LFIRRSSASILVVLIYVDDLTVT 3428
            LF+ +   SI+ +L+YVDD+ +T
Sbjct: 992  LFVLQRGRSIIYMLVYVDDILIT 1014


>dbj|BAA78426.1| polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score =  232 bits (592), Expect(2) = 3e-78
 Identities = 139/390 (35%), Positives = 196/390 (50%), Gaps = 12/390 (3%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAYTAEYNPPMSAFS------SMDLMNPI----WCLDYGAT 1142
            CQIC+  GH+A+ C +      T       S F+      ++ + +P     W LD GAT
Sbjct: 277  CQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANLAVNSPYNANNWLLDSGAT 336

Query: 1143 HHMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIKK 1322
            HH+T   + L+  QPYTG + + + +GS +P               L LN VL +P I K
Sbjct: 337  HHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNINK 396

Query: 1323 KFLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFYHLQTSSFPSGSQLFFG 1502
              +S+ R    N    E   A F VKD  TG  LL G +KD  Y    +S  + S     
Sbjct: 397  NLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASP 456

Query: 1503 -ARTNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLPFSDRDS 1679
             ++     WH+RLGHPS  I N +   + LP+ +       C  C I KS K+PFS+   
Sbjct: 457  CSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTI 516

Query: 1680 CTKTPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTFVFFKK- 1856
             +  PLE ++ D+W  SP+ S   YRYY+  +D +TRY W YPL + S    TF+ FK  
Sbjct: 517  TSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSL 575

Query: 1857 NDRKFSFSFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKHRHIVGM 2036
             + +F       + +     +      +L ++GI H  S P T + NG++ERKHRHIV M
Sbjct: 576  VENRFQTRIGTLYSDNGGEFVV--LRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEM 633

Query: 2037 GLYLLSQSALPSKYWVEAFSTTVFLINHLP 2126
            GL LLS +++P  YW  AFS  V+LIN LP
Sbjct: 634  GLTLLSHASVPKTYWPYAFSVAVYLINRLP 663



 Score = 90.1 bits (222), Expect(2) = 3e-78
 Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 11/130 (8%)
 Frame = +1

Query: 2161 VIGKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIF 2340
            + G+ P+Y  L++FGC C+P+L PYN  KL+ KS +C F+ Y  +   Y C+ I +GR++
Sbjct: 676  LFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLY 735

Query: 2341 ISRHVVFDEGNFPFIV-----------QAQSNPTFPRDLTASFPVIQLPATIFHDSPHPL 2487
             SRHV FDE  FPF             ++ S P +P   T     + LPA      PH  
Sbjct: 736  TSRHVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTPLVLPAPPCL-GPHLD 794

Query: 2488 DSHDQPSTPT 2517
             S   PS P+
Sbjct: 795  TSPRPPSLPS 804



 Score =  229 bits (583), Expect = 9e-57
 Identities = 108/203 (53%), Positives = 144/203 (70%), Gaps = 1/203 (0%)
 Frame = +3

Query: 2823 EPNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATP-TMNIVACRWVFKVKRNADGSL 2999
            EP +  QA K   W QAM  + +A + NHTW LVP  P ++ IV CRW+F  K N+DGSL
Sbjct: 957  EPRTAIQAMKDDRWRQAMGSKINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSL 1016

Query: 3000 ERHKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKLDVRNVFLNGV 3179
             R+KARLVAKGY+Q+ GLDY ETFSPV+K ++I ++L +AV R W +++LDV N FL G 
Sbjct: 1017 NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1076

Query: 3180 LHEDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQGFSNSQCDSS 3359
            L ++VYM QPPGF D  +   VC+L  A+YGLKQAPR+WY  LR +L+  GF NS  D+S
Sbjct: 1077 LTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTS 1136

Query: 3360 LFIRRSSASILVVLIYVDDLTVT 3428
            LF+ +   SI+ +L+YVDD+ +T
Sbjct: 1137 LFVLQRGRSIIYMLVYVDDILIT 1159



 Score = 80.5 bits (197), Expect = 5e-12
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 4/185 (2%)
 Frame = +1

Query: 169 TPMERNTYLCWRSQFENILELHDLKELVSSSHSCPEAKLSDG---RDNPAHSSWKKTDKL 339
           T +    YL W  Q   + + ++L   +  S   P A +      R NP ++ W++ DKL
Sbjct: 24  TKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRWRRQDKL 83

Query: 340 VLSWLRATVSPSIQSLVLSCSTSLQAWSLLERRLSPVSKTHVRTLRDQLWSLKKDSDKPV 519
           + S +   +S S+Q  V   +T+ Q W  L +  +  S  HV  LR QL    K + K +
Sbjct: 84  IYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGA-KTI 142

Query: 520 ADYLLHAETLADSLAAAGTPLPDSDLIEYIIDGLGHDYKEFVTSLHLRQA-TTFDEFYDL 696
            DY+    T  D LA  G P+   + +E +++ L  DYK  +  +  +    +  E ++ 
Sbjct: 143 DDYMQGFITRFDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHER 202

Query: 697 VIQEE 711
           +I +E
Sbjct: 203 LINQE 207


>dbj|BAM42649.1| Polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score =  232 bits (592), Expect(2) = 3e-78
 Identities = 139/390 (35%), Positives = 196/390 (50%), Gaps = 12/390 (3%)
 Frame = +3

Query: 993  CQICNKYGHTARVCTE*QNLAYTAEYNPPMSAFS------SMDLMNPI----WCLDYGAT 1142
            CQIC+  GH+A+ C +      T       S F+      ++ + +P     W LD GAT
Sbjct: 277  CQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANLAVNSPYNANNWLLDSGAT 336

Query: 1143 HHMTPTTDPLTQVQPYTGTNTMTVGNGSQLPXXXXXXXXXXXXXXXLALNGVLCIPTIKK 1322
            HH+T   + L+  QPYTG + + + +GS +P               L LN VL +P I K
Sbjct: 337  HHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNINK 396

Query: 1323 KFLSIQRFSRDNDCVFELDSADFSVKDKRTGKILLNGNSKDGFYHLQTSSFPSGSQLFFG 1502
              +S+ R    N    E   A F VKD  TG  LL G +KD  Y    +S  + S     
Sbjct: 397  NLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASP 456

Query: 1503 -ARTNQDMWHARLGHPSHNITNILHKKYKLPIRDKLDSNKFCHVCPIGKSCKLPFSDRDS 1679
             ++     WH+RLGHPS  I N +   + LP+ +       C  C I KS K+PFS+   
Sbjct: 457  CSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTI 516

Query: 1680 CTKTPLELLHLDLWGPSPVSSDHGYRYYLSIIDDYTRYVWFYPLARMSNTFSTFVFFKK- 1856
             +  PLE ++ D+W  SP+ S   YRYY+  +D +TRY W YPL + S    TF+ FK  
Sbjct: 517  TSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSL 575

Query: 1857 NDRKFSFSFHQKHPNRWWW*IC*SFTSFLQENGIFHRISCPCTSQ*NGIAERKHRHIVGM 2036
             + +F       + +     +      +L ++GI H  S P T + NG++ERKHRHIV M
Sbjct: 576  VENRFQTRIGTLYSDNGGEFVV--LRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEM 633

Query: 2037 GLYLLSQSALPSKYWVEAFSTTVFLINHLP 2126
            GL LLS +++P  YW  AFS  V+LIN LP
Sbjct: 634  GLTLLSHASVPKTYWPYAFSVAVYLINRLP 663



 Score = 90.1 bits (222), Expect(2) = 3e-78
 Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 11/130 (8%)
 Frame = +1

Query: 2161 VIGKIPDYRFLRIFGCTCFPYLAPYNSQKLQAKSTKCVFLSYENSHKGYRCMDISSGRIF 2340
            + G+ P+Y  L++FGC C+P+L PYN  KL+ KS +C F+ Y  +   Y C+ I +GR++
Sbjct: 676  LFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLY 735

Query: 2341 ISRHVVFDEGNFPFIV-----------QAQSNPTFPRDLTASFPVIQLPATIFHDSPHPL 2487
             SRHV FDE  FPF             ++ S P +P   T     + LPA      PH  
Sbjct: 736  TSRHVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTPLVLPAPPCL-GPHLD 794

Query: 2488 DSHDQPSTPT 2517
             S   PS P+
Sbjct: 795  TSPRPPSLPS 804



 Score =  230 bits (587), Expect = 3e-57
 Identities = 109/203 (53%), Positives = 144/203 (70%), Gaps = 1/203 (0%)
 Frame = +3

Query: 2823 EPNSYTQASKFAHW*QAMAEEYDALLKNHTWSLVPATP-TMNIVACRWVFKVKRNADGSL 2999
            EP +  QA K   W QAM  E +A + NHTW LVP  P ++ IV CRW+F  K N+DGSL
Sbjct: 957  EPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSL 1016

Query: 3000 ERHKARLVAKGYSQQEGLDYTETFSPVVKPSTIHLILSLAVSRKWVLKKLDVRNVFLNGV 3179
             R+KARLVAKGY+Q+ GLDY ETFSPV+K ++I ++L +AV R W +++LDV N FL G 
Sbjct: 1017 NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1076

Query: 3180 LHEDVYMQQPPGFTDPLKRGCVCKLHHALYGLKQAPRSWYHHLRAFLIAQGFSNSQCDSS 3359
            L ++VYM QPPGF D  +   VC+L  A+YGLKQAPR+WY  LR +L+  GF NS  D+S
Sbjct: 1077 LTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTS 1136

Query: 3360 LFIRRSSASILVVLIYVDDLTVT 3428
            LF+ +   SI+ +L+YVDD+ +T
Sbjct: 1137 LFVLQRGRSIIYMLVYVDDILIT 1159



 Score = 80.5 bits (197), Expect = 5e-12
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 4/185 (2%)
 Frame = +1

Query: 169 TPMERNTYLCWRSQFENILELHDLKELVSSSHSCPEAKLSDG---RDNPAHSSWKKTDKL 339
           T +    YL W  Q   + + ++L   +  S   P A +      R NP ++ W++ DKL
Sbjct: 24  TKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRWRRQDKL 83

Query: 340 VLSWLRATVSPSIQSLVLSCSTSLQAWSLLERRLSPVSKTHVRTLRDQLWSLKKDSDKPV 519
           + S +   +S S+Q  V   +T+ Q W  L +  +  S  HV  LR QL    K + K +
Sbjct: 84  IYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGA-KTI 142

Query: 520 ADYLLHAETLADSLAAAGTPLPDSDLIEYIIDGLGHDYKEFVTSLHLRQA-TTFDEFYDL 696
            DY+    T  D LA  G P+   + +E +++ L  DYK  +  +  +    +  E ++ 
Sbjct: 143 DDYMQGFITRFDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHER 202

Query: 697 VIQEE 711
           +I +E
Sbjct: 203 LINQE 207