BLASTX nr result
ID: Rauwolfia21_contig00019754
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00019754
(1436 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC88802.1| putative coat protein [Nicotiana tabacum] 77 2e-11
emb|CAC88796.1| putative coat protein [Nicotiana tabacum] 76 4e-11
emb|CAC88783.1| putative coat protein [Nicotiana tabacum] 76 4e-11
emb|CAB42620.1| putative coat protein [Nicotiana tabacum] 76 4e-11
ref|NP_569139.1| putative coat protein [Tobacco vein clearing vi... 75 7e-11
gb|AAA79871.1| ORF I [Cassava vein mosaic virus] 75 7e-11
ref|NP_056846.1| coat protein/movement protein [Cassava vein mos... 74 1e-10
ref|YP_004300272.1| coat protein [Sweet potato vein clearing vir... 73 3e-10
ref|XP_003619554.1| Capsid protein [Medicago truncatula] gi|3554... 60 3e-06
>emb|CAC88802.1| putative coat protein [Nicotiana tabacum]
Length = 594
Score = 77.0 bits (188), Expect = 2e-11
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 9/177 (5%)
Frame = -3
Query: 1365 SYDKETRGYAGLASTYRKNRERDKFTPYEKMIGEPINPFGIYLDLDCITNVEEAIDKWDT 1186
SYD R T R K+ P + I E N +LDLDC+ ++ + I W
Sbjct: 216 SYDAYDRN-----KTLWDKRLNKKWAP--RQITEQYN----FLDLDCVADINKTIQLWMR 264
Query: 1185 SLRIAVAVNKMDIREVQHFIERSMVNSVLSYWQNLTKETVDTIFS---LD----DNIANI 1027
+ + NK+ I E +IER+++ +V + QNL+ E++DT+ S LD + +I
Sbjct: 265 YISKQLIDNKITITETPEYIERTLIGTVKLWLQNLSSESLDTLRSNKKLDGTTTTTVTDI 324
Query: 1026 ISRATEIIRLEFCGEGDIFKDPN--TITKYAIALQRLQLCDICEIDRYICVFQDYYY 862
+++ IR EF ++ N IT + + +L +C++C ID Y C F+DYYY
Sbjct: 325 LNKYEIAIRNEFSSMTTEVEEQNKEKITNRNL-MTKLAICNMCYIDEYTCAFRDYYY 380
>emb|CAC88796.1| putative coat protein [Nicotiana tabacum]
Length = 594
Score = 75.9 bits (185), Expect = 4e-11
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 9/177 (5%)
Frame = -3
Query: 1365 SYDKETRGYAGLASTYRKNRERDKFTPYEKMIGEPINPFGIYLDLDCITNVEEAIDKWDT 1186
SYD R T R K+ P + I E N +LDLDC+ ++ + I W
Sbjct: 216 SYDAYDRN-----KTLWDKRLNKKWAP--RQITEQYN----FLDLDCVADINKTIQLWIG 264
Query: 1185 SLRIAVAVNKMDIREVQHFIERSMVNSVLSYWQNLTKETVDTIFS---LD----DNIANI 1027
+ + NK+ I E +IER+++ +V + QNL+ E++DT+ S LD + +I
Sbjct: 265 YISKQLIDNKITITETPGYIERTLIGTVKLWLQNLSSESLDTLRSNKKLDGTTTTTVTDI 324
Query: 1026 ISRATEIIRLEFCGEGDIFKDPN--TITKYAIALQRLQLCDICEIDRYICVFQDYYY 862
+++ IR EF ++ N IT + + +L +C++C ID Y C F+DYYY
Sbjct: 325 LNKYEIAIRNEFSSMTTEVEEQNKEKITNRNL-MTKLAICNMCYIDEYTCAFRDYYY 380
>emb|CAC88783.1| putative coat protein [Nicotiana tabacum]
Length = 598
Score = 75.9 bits (185), Expect = 4e-11
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 9/177 (5%)
Frame = -3
Query: 1365 SYDKETRGYAGLASTYRKNRERDKFTPYEKMIGEPINPFGIYLDLDCITNVEEAIDKWDT 1186
SYD R T R K+ P + I E N +LDLDC+ ++ + I W
Sbjct: 220 SYDAYDRN-----KTLWDKRLNKKWAP--RQITEQYN----FLDLDCVADINKTIQLWIG 268
Query: 1185 SLRIAVAVNKMDIREVQHFIERSMVNSVLSYWQNLTKETVDTIFS---LD----DNIANI 1027
+ + NK+ I E +IER+++ +V + QNL+ E++DT+ S LD + +I
Sbjct: 269 YISKQLIDNKITITETPGYIERTLIGTVKLWLQNLSSESLDTLRSNKKLDGTTTTTVTDI 328
Query: 1026 ISRATEIIRLEFCGEGDIFKDPN--TITKYAIALQRLQLCDICEIDRYICVFQDYYY 862
+++ IR EF ++ N IT + + +L +C++C ID Y C F+DYYY
Sbjct: 329 LNKYEIAIRNEFSSMTTEVEEQNKEKITNRNL-MTKLAICNMCYIDEYTCAFRDYYY 384
>emb|CAB42620.1| putative coat protein [Nicotiana tabacum]
Length = 598
Score = 75.9 bits (185), Expect = 4e-11
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 9/177 (5%)
Frame = -3
Query: 1365 SYDKETRGYAGLASTYRKNRERDKFTPYEKMIGEPINPFGIYLDLDCITNVEEAIDKWDT 1186
SYD R T R K+ P + I E N +LDLDC+ ++ + I W
Sbjct: 220 SYDAYDRN-----KTLWDKRLNKKWAP--RQITEQYN----FLDLDCVADINKTIQLWIG 268
Query: 1185 SLRIAVAVNKMDIREVQHFIERSMVNSVLSYWQNLTKETVDTIFS---LD----DNIANI 1027
+ + NK+ I E +IER+++ +V + QNL+ E++DT+ S LD + +I
Sbjct: 269 YISKQLIDNKITITETPGYIERTLIGTVKLWLQNLSSESLDTLRSNKKLDGTTTTTVTDI 328
Query: 1026 ISRATEIIRLEFCGEGDIFKDPN--TITKYAIALQRLQLCDICEIDRYICVFQDYYY 862
+++ IR EF ++ N IT + + +L +C++C ID Y C F+DYYY
Sbjct: 329 LNKYEIAIRNEFSSMTTEVEEQNKEKITNRNL-MTKLAICNMCYIDEYTCAFRDYYY 384
>ref|NP_569139.1| putative coat protein [Tobacco vein clearing virus]
gi|6425073|gb|AAF08287.1|AF190123_1 putative coat protein
[Tobacco vein clearing virus]
Length = 579
Score = 75.1 bits (183), Expect = 7e-11
Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 8/176 (4%)
Frame = -3
Query: 1365 SYDKETRGYAGLASTYRKNRERDKFTPYEKMIGEPINPFGIYLDLDCITNVEEAIDKWDT 1186
SY++ R +T +R K+TP +PI+ +LDLDC+ ++ + I W
Sbjct: 207 SYEQSDRN-----NTLWNSRLNKKWTP------KPIHEQYNFLDLDCVEDINKTIQLWIG 255
Query: 1185 SLRIAVAVNKMDIREVQHFIERSMVNSVLSYWQNLTKETVDTIFSLDDNIANIISRATEI 1006
+ + NK+ I E +IER+++ +V + NLTKE++DT+ S ++ + + EI
Sbjct: 256 YISKQLIDNKIGITETPGYIERTLIGTVKLWLHNLTKESIDTLRSNKKFNGDMATTSMEI 315
Query: 1005 IRLEFCGEGDIFKDPNTITK--------YAIALQRLQLCDICEIDRYICVFQDYYY 862
+ + F T T+ + +L +C++C ID Y C F++YYY
Sbjct: 316 LYKYEIAIRNEFSSMTTETEEQHKEKQINRNLMTKLAICNMCYIDEYTCAFREYYY 371
>gb|AAA79871.1| ORF I [Cassava vein mosaic virus]
Length = 1372
Score = 75.1 bits (183), Expect = 7e-11
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 8/190 (4%)
Frame = -3
Query: 1359 DKETRGYAGLASTYRKNRERDKFTPYEKMIGEPINPFGIYLDLDCIT--NVEEAIDKWDT 1186
+++ +G + + Y KNR + + Y+ + IN G L+LDC T E+ I KW
Sbjct: 432 ERQYKGQSSQRADYIKNRREEFESTYQANMNTTINDSGEILNLDCTTPEEAEDRIQKWTQ 491
Query: 1185 SLRIAVAVNKMDIREVQHFIERSMVNSVLSYWQNLTKETVDTIFSLDDNIANIISRATEI 1006
S+ IA+ ++ + + FI R+ + +V +++NLT E L+ N + E+
Sbjct: 492 SMSIALVKQQLSNEQAKQFIRRTFIGNVKEWYKNLTNEAKQ---KLEGNAPLLSLTHMEL 548
Query: 1005 -IRLEFCG---EGDIFKDPNTITKYAIALQRLQLC--DICEIDRYICVFQDYYYHIFNQV 844
+R EF E D+ K + + +LQ+C D ++ Y+C FQ+YYY
Sbjct: 549 GLRAEFGKLGIESDVEKHEKKTSIARHKILQLQICSMDHQNLNAYLCEFQEYYYSANYTE 608
Query: 843 PNSNMYLPMF 814
S L MF
Sbjct: 609 AESENILNMF 618
>ref|NP_056846.1| coat protein/movement protein [Cassava vein mosaic virus]
gi|82020339|sp|Q66283.1|CP_CSVMV RecName: Full=Putative
Polyprotein CP; Contains: RecName: Full=Capsid protein;
AltName: Full=Coat protein; Short=CP; Contains: RecName:
Full=Movement protein; Short=Mov; AltName:
Full=Cell-to-cell transport protein
gi|1399882|gb|AAB03325.1| ORF 1 [Cassava vein mosaic
virus]
Length = 1372
Score = 74.3 bits (181), Expect = 1e-10
Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 8/190 (4%)
Frame = -3
Query: 1359 DKETRGYAGLASTYRKNRERDKFTPYEKMIGEPINPFGIYLDLDCIT--NVEEAIDKWDT 1186
+++ +G + + Y KNR + Y+ + IN G L+LDC T E+ I KW
Sbjct: 432 ERQYKGQSSQRADYIKNRREQFESTYQANMNTTINDSGEILNLDCTTPEEAEDRIQKWTQ 491
Query: 1185 SLRIAVAVNKMDIREVQHFIERSMVNSVLSYWQNLTKETVDTIFSLDDNIANIISRATEI 1006
S+ IA+ ++ + + FI R+ + +V +++NLT E L+ N + E+
Sbjct: 492 SMSIALVKQQLSNEQAKQFIRRTFIGNVKEWYKNLTNEAKQ---KLEGNAPLLSLTHMEL 548
Query: 1005 -IRLEFCG---EGDIFKDPNTITKYAIALQRLQLC--DICEIDRYICVFQDYYYHIFNQV 844
+R EF E D+ K + + +LQ+C D ++ Y+C FQ+YYY
Sbjct: 549 GLRAEFGKLGIESDVEKHEKKTSIARHKILQLQICSMDHQNLNAYLCEFQEYYYSANYTE 608
Query: 843 PNSNMYLPMF 814
S L MF
Sbjct: 609 AESENILNMF 618
>ref|YP_004300272.1| coat protein [Sweet potato vein clearing virus]
gi|325698379|gb|ADZ45062.1| coat protein [Sweet potato
vein clearing virus]
Length = 650
Score = 73.2 bits (178), Expect = 3e-10
Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 13/203 (6%)
Frame = -3
Query: 1428 NRHVTDIPSTSTDIPRTTESKSYD---KETRGYAGLASTYR-----KNRERDKFTPYEKM 1273
N V + S +TD T +S E R Y R KNRE DK ++K
Sbjct: 255 NETVNSLSSENTDSKMTDSVESVSVNANEQRPYKRPIEPVRYSFSQKNRE-DKL--WQKR 311
Query: 1272 IGEPINP----FGIYLDLDCITNVEEAIDKWDTSLRIAVAVNKMDIREVQHFIERSMVNS 1105
+ E P +LDLDC+ + +E I W + + NK+ I E +IERS++ +
Sbjct: 312 LNEDFIPKDRKCNEFLDLDCVKDSDEIIQAWIGYIAKQLTDNKISISEAPGYIERSLIGN 371
Query: 1104 VLSYWQNLTKETVDTIFSLDDNIANIISRATEIIRLEF-CGEGDIFKDPNTITKYAIALQ 928
V +++ L+ + ++ + +I+ + +IR EF + K K I L
Sbjct: 372 VRTWFLQLSDDVKLSLRKSEPGAMDILVKYELLIRSEFSSATSEANKKYGEQLKNRIFLN 431
Query: 927 RLQLCDICEIDRYICVFQDYYYH 859
+L +C++C I+ Y C F YYY+
Sbjct: 432 QLAICNLCYINEYCCAFSKYYYN 454
>ref|XP_003619554.1| Capsid protein [Medicago truncatula] gi|355494569|gb|AES75772.1|
Capsid protein [Medicago truncatula]
Length = 306
Score = 59.7 bits (143), Expect = 3e-06
Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 13/184 (7%)
Frame = -3
Query: 1368 KSYDKET---RGYAGLASTYRKNRERDKFTP-YEKMIGEPINPFGIYLDLDCITNVEEAI 1201
++Y+ ET RGY + K D+F P YE+ + + L+LDC+ N EE +
Sbjct: 20 ENYENETVNRRGYTRANGKWTKIS--DEFKPHYEEGKSKKL------LNLDCVRNPEEIL 71
Query: 1200 DKWDTSLRIAVAVN----KMDIREVQHFIERSMVNSVLSYWQNLTKETVDTIFSLDDNIA 1033
++W ++ + + + K+++ +V++ + +VL ++ ET + +N
Sbjct: 72 ERWSNNMIMLLETDDKFSKVNLMDVKNLLAYRTTWNVLKKLTSIEDETWQQYARMTENNQ 131
Query: 1032 NIISRATEIIRLEFCGEGDIFKDPNTITKYA-----IALQRLQLCDICEIDRYICVFQDY 868
E+I EF +I + + K L +Q+C++CEID +IC F+ Y
Sbjct: 132 QFAKLIIELIYKEFIWF-NILEHKAKVNKQLRERAKAHLNNMQICNMCEIDSFICEFKKY 190
Query: 867 YYHI 856
YY +
Sbjct: 191 YYEL 194