BLASTX nr result
ID: Rauwolfia21_contig00018978
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00018978
(763 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 223 5e-56
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 222 1e-55
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 220 5e-55
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 218 2e-54
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 217 3e-54
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group] 217 3e-54
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 216 9e-54
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 216 9e-54
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 213 4e-53
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 211 2e-52
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 201 2e-49
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 194 2e-47
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 194 2e-47
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 194 2e-47
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 192 1e-46
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 191 2e-46
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 190 5e-46
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar... 188 1e-45
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 188 1e-45
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group] 187 3e-45
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 223 bits (568), Expect = 5e-56
Identities = 118/258 (45%), Positives = 162/258 (62%), Gaps = 5/258 (1%)
Frame = +3
Query: 3 IELKTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCP 182
I+ KTP EVW+G+P++YS L++FGC AY HV+ GKLEPR+ KCIFLGY SGVKG++LWCP
Sbjct: 847 IDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCP 906
Query: 183 KTSKIINSRDVIFDEMSMVNPRHENSSPAHTTSGGS--SEKVEXXXXXXXXXXXXXXXXX 356
+T K++ SR+V+F E M++ + + P + S E +
Sbjct: 907 ETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDE 966
Query: 357 PV--XXXXXXXXXXXQYSIAKNRQKRQIRPPQRY-ADTDFVAYALTVAEDTCFDDEPATF 527
PV + SIAK+R KR I+PPQRY + + VAYAL+VAE+ + EP+T+
Sbjct: 967 PVIEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTY 1026
Query: 528 DEAMRSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKKVQGAEHEGIR 707
EA+ S WI AM +EM+SL KN TWELVK P +K + KW+FK+K + + R
Sbjct: 1027 SEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEAR 1086
Query: 708 YKARLVAKGYTQRYGVDF 761
YKARL+AKGY+Q G+DF
Sbjct: 1087 YKARLIAKGYSQIPGIDF 1104
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 222 bits (565), Expect = 1e-55
Identities = 126/263 (47%), Positives = 163/263 (61%), Gaps = 10/263 (3%)
Frame = +3
Query: 3 IELKTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWC- 179
I+ KTP+EVW+G PS+YS LKIFGCPAY HV++GKLEPR+ KCIFLGY++GVKG+RLWC
Sbjct: 739 IDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCT 798
Query: 180 -PKTSKIINSRDVIFDEMSMVNPRHENSSPAHT--TSGGSSEKVEXXXXXXXXXXXXXXX 350
+T K I SRDV FDE +M R E A T T G+++KVE
Sbjct: 799 EDRTPKFIISRDVTFDESAMFGQRKEFGDLAGTSKTDLGANQKVE-----FEVDAPMENG 853
Query: 351 XXPVXXXXXXXXXXXQYSIAKNRQKRQIRPPQRYAD------TDFVAYALTVAEDTCFDD 512
SIA +R +R+IR P RY D T+ VA+AL VAE+ +
Sbjct: 854 VDDTSEEQPVIDQNDSQSIAAHRPRREIRRPMRYVDCVSANITNPVAFALAVAEE-IGRE 912
Query: 513 EPATFDEAMRSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKKVQGAE 692
EP ++ EAM S SK+W+ +M +EM SL KNQTWELV P G K V KW+FK K +
Sbjct: 913 EPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISX 972
Query: 693 HEGIRYKARLVAKGYTQRYGVDF 761
E +YK+RLVAKG++Q+ G+D+
Sbjct: 973 DEPPKYKSRLVAKGFSQKEGIDY 995
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 220 bits (560), Expect = 5e-55
Identities = 118/265 (44%), Positives = 162/265 (61%), Gaps = 12/265 (4%)
Frame = +3
Query: 3 IELKTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCP 182
I+ KTP EVW+G+P++YS L++FGC AY HV+ GKLEPR+ KCIFLGY SGVK ++LWCP
Sbjct: 519 IDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKDYKLWCP 578
Query: 183 KTSKIINSRDVIFDEMSMVNPRHENSSPA-----------HTTSGGSSEKVEXXXXXXXX 329
KT K++ SR+V+F E M++ + + P H S G + + E
Sbjct: 579 KTKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDA 638
Query: 330 XXXXXXXXXPVXXXXXXXXXXXQYSIAKNRQKRQIRPPQRYAD-TDFVAYALTVAEDTCF 506
V + SIAK++ KR I+PP+RY + + VAYAL+VAE+
Sbjct: 639 SVIEDSDSSAVQQSP-------KRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEG 691
Query: 507 DDEPATFDEAMRSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKKVQG 686
+ EP+T+ EA+ S WI AM +EM+SL KN TWELVK P +K + KW+FK+K
Sbjct: 692 NAEPSTYSEAIVSDGCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGM 751
Query: 687 AEHEGIRYKARLVAKGYTQRYGVDF 761
+ + RYKARLVAKGY+Q G+DF
Sbjct: 752 SPSDEARYKARLVAKGYSQIPGIDF 776
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 218 bits (555), Expect = 2e-54
Identities = 116/258 (44%), Positives = 161/258 (62%), Gaps = 5/258 (1%)
Frame = +3
Query: 3 IELKTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCP 182
I+ KTP EVW+G+P++YS L++FGC AY HV+ GKLEPR+ KCIFLGY+SGVKG++LWCP
Sbjct: 612 IDKKTPIEVWSGSPTNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCP 671
Query: 183 KTSKIINSRDVIFDEMSMVNPRHENSSPAHTTSGGS--SEKVEXXXXXXXXXXXXXXXXX 356
+T K++ SR+V+F E +++ + + P + S E +
Sbjct: 672 ETKKVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDA 731
Query: 357 PV--XXXXXXXXXXXQYSIAKNRQKRQIRPPQRY-ADTDFVAYALTVAEDTCFDDEPATF 527
PV + SIAK++ KR I+PP+RY + VAYAL+VAE + EP+T+
Sbjct: 732 PVIEDSDSSIVHQSPKRSIAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTY 791
Query: 528 DEAMRSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKKVQGAEHEGIR 707
EA+ S WI AM +EM+SL KN TWELVK P +K + KW+FK+K + + R
Sbjct: 792 SEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEAR 851
Query: 708 YKARLVAKGYTQRYGVDF 761
YKARLVAKGY+Q G+DF
Sbjct: 852 YKARLVAKGYSQIPGIDF 869
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 217 bits (553), Expect = 3e-54
Identities = 115/256 (44%), Positives = 158/256 (61%), Gaps = 3/256 (1%)
Frame = +3
Query: 3 IELKTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCP 182
I+ KTP E+W+G +DYS LK FGC AY HV+EGKLEPR+KK +F+GY GVKGFR+W P
Sbjct: 618 IQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSP 677
Query: 183 KTSKIINSRDVIFDEMSMVNPRHENSSPAHTTSGGSSEKVEXXXXXXXXXXXXXXXXXPV 362
++I SR+V+FDE ++ + ++ + T S + + P
Sbjct: 678 AEKRVIMSRNVVFDESPLLRTIVKPTTTSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQ 737
Query: 363 XXXXXXXXXXXQY--SIAKNRQKRQ-IRPPQRYADTDFVAYALTVAEDTCFDDEPATFDE 533
SIA++R +R +RPP RY D V YAL VAE+ EP+T+ E
Sbjct: 738 TETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVD-TSEPSTYKE 796
Query: 534 AMRSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKKVQGAEHEGIRYK 713
A+ SS S++W AM +EM+SLHKNQTW+LV P G+KI+ KWVFKKK + EG++YK
Sbjct: 797 AILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYK 856
Query: 714 ARLVAKGYTQRYGVDF 761
AR+VA+G+ QR GVD+
Sbjct: 857 ARVVARGFNQREGVDY 872
>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
Length = 1007
Score = 217 bits (553), Expect = 3e-54
Identities = 115/258 (44%), Positives = 156/258 (60%), Gaps = 5/258 (1%)
Frame = +3
Query: 3 IELKTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCP 182
I+ KTP EVW+ +P +YS L++FGC AY HV+ GKLEPR+ KCIFLGY SG+KG++LWCP
Sbjct: 422 IDKKTPIEVWSDSPVNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGMKGYKLWCP 481
Query: 183 KTSKIINSRDVIFDEMSMVNPRHENSSPAHTTSGGSSEKVEXXXXXXXXXXXXXXXXXPV 362
KT K++ SR+V+F E M++ + + P + S + V
Sbjct: 482 KTKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINQDV 541
Query: 363 XXXXXXXXXXXQYS----IAKNRQKRQIRPPQRY-ADTDFVAYALTVAEDTCFDDEPATF 527
Q S IAK++ KR +PPQRY + + VAYAL+VAED + EP+T+
Sbjct: 542 PVIEDSDSSTVQQSPKRFIAKDKPKRNTKPPQRYIEEANIVAYALSVAEDIEGNAEPSTY 601
Query: 528 DEAMRSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKKVQGAEHEGIR 707
EA+ S WI AM +EM+SL KN TWELVK P +K + KW+FK+K + +
Sbjct: 602 SEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGISPSDEAM 661
Query: 708 YKARLVAKGYTQRYGVDF 761
YKARLVAKGY+Q G+DF
Sbjct: 662 YKARLVAKGYSQIPGIDF 679
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 216 bits (549), Expect = 9e-54
Identities = 114/255 (44%), Positives = 159/255 (62%), Gaps = 5/255 (1%)
Frame = +3
Query: 12 KTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCPKTS 191
KTP EVW+G+P++YS L++FGC AY HV+ GKLEPR+ KCIFLGY SGVKG++LWCP+T
Sbjct: 678 KTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK 737
Query: 192 KIINSRDVIFDEMSMVNPRHENSSPAHTTSGGS--SEKVEXXXXXXXXXXXXXXXXXPV- 362
K++ SR+V+F E +++ + + P + S E + PV
Sbjct: 738 KVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINQDAPVI 797
Query: 363 -XXXXXXXXXXXQYSIAKNRQKRQIRPPQRY-ADTDFVAYALTVAEDTCFDDEPATFDEA 536
+ SIAK++ KR I+PP+RY + + VAYAL+VAE+ + EP+T+ EA
Sbjct: 798 EDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEA 857
Query: 537 MRSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKKVQGAEHEGIRYKA 716
+ S WI AM +EM+SL KN TWE VK P +K + KW+FK+K + + RYKA
Sbjct: 858 IVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKA 917
Query: 717 RLVAKGYTQRYGVDF 761
RLVAKGY+Q G+DF
Sbjct: 918 RLVAKGYSQIPGIDF 932
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 216 bits (549), Expect = 9e-54
Identities = 114/255 (44%), Positives = 159/255 (62%), Gaps = 5/255 (1%)
Frame = +3
Query: 12 KTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCPKTS 191
KTP EVW+G+P++YS L++FGC AY HV+ GKLEPR+ KCIFLGY SGVKG++LWCP+T
Sbjct: 678 KTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK 737
Query: 192 KIINSRDVIFDEMSMVNPRHENSSPAHTTSGGS--SEKVEXXXXXXXXXXXXXXXXXPV- 362
K++ SR+V+F E +++ + + P + S E + PV
Sbjct: 738 KVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINQDAPVI 797
Query: 363 -XXXXXXXXXXXQYSIAKNRQKRQIRPPQRY-ADTDFVAYALTVAEDTCFDDEPATFDEA 536
+ SIAK++ KR I+PP+RY + + VAYAL+VAE+ + EP+T+ EA
Sbjct: 798 EDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEA 857
Query: 537 MRSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKKVQGAEHEGIRYKA 716
+ S WI AM +EM+SL KN TWE VK P +K + KW+FK+K + + RYKA
Sbjct: 858 IVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKA 917
Query: 717 RLVAKGYTQRYGVDF 761
RLVAKGY+Q G+DF
Sbjct: 918 RLVAKGYSQIPGIDF 932
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 213 bits (543), Expect = 4e-53
Identities = 115/265 (43%), Positives = 160/265 (60%), Gaps = 12/265 (4%)
Frame = +3
Query: 3 IELKTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCP 182
I+ KTP EVW+G+P++YS L++FGC AY HV+ GKLEPR KCIFLGY SGVKG++LWCP
Sbjct: 549 IDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCP 608
Query: 183 KTSKIINSRDVIFDEMSMVNPRHENSSPA-----------HTTSGGSSEKVEXXXXXXXX 329
+T K++ SR+V+F E M++ + + P H S G + + E
Sbjct: 609 ETKKVVISRNVVFHESIMLHDKPSTNVPVESQEKVSVQVEHLISSGHAPEKEDVAINQDA 668
Query: 330 XXXXXXXXXPVXXXXXXXXXXXQYSIAKNRQKRQIRPPQRY-ADTDFVAYALTVAEDTCF 506
V + SIAK+R KR +PP+RY + + VAYAL+VAE+
Sbjct: 669 PVIEDSDSSIV-------QQSPKRSIAKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEG 721
Query: 507 DDEPATFDEAMRSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKKVQG 686
+ EP+T+ +A+ S WI AM +EM+SL KN +WEL K P +K + KW+FK+K
Sbjct: 722 NAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGM 781
Query: 687 AEHEGIRYKARLVAKGYTQRYGVDF 761
+ + RYKARLVAKGY+Q G+DF
Sbjct: 782 SPSDEARYKARLVAKGYSQIPGIDF 806
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 211 bits (537), Expect = 2e-52
Identities = 123/256 (48%), Positives = 156/256 (60%), Gaps = 10/256 (3%)
Frame = +3
Query: 3 IELKTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWC- 179
I+ KTP+EVW+G PS+YS LKIFGCPAY HV++GKLEPR+ KCIFLGY++GVKG+RLWC
Sbjct: 952 IDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCT 1011
Query: 180 -PKTSKIINSRDVIFDEMSMVNPRHENSSPAHT--TSGGSSEKVEXXXXXXXXXXXXXXX 350
+T K I SRDV FDE +M R E A T T G+++KVE
Sbjct: 1012 EDRTPKFIISRDVTFDESAMFGQRKEFGDLAGTSKTDLGANQKVE-----FEVDAPMENG 1066
Query: 351 XXPVXXXXXXXXXXXQYSIAKNRQKRQIRPPQRYAD------TDFVAYALTVAEDTCFDD 512
SIA R +R+IR P RY D T+ VA+AL VAE+ +
Sbjct: 1067 VDDTSEEQPVIDQNDSQSIAAXRPRREIRRPMRYVDCVSANITNPVAFALAVAEE-IGRE 1125
Query: 513 EPATFDEAMRSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKKVQGAE 692
EP ++ EAM S SK+W+ +M +EM SL KNQTWELV P G K V KW+FK K +E
Sbjct: 1126 EPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISE 1185
Query: 693 HEGIRYKARLVAKGYT 740
E +YK+RLVAK ++
Sbjct: 1186 DEPPKYKSRLVAKVFS 1201
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 201 bits (511), Expect = 2e-49
Identities = 103/267 (38%), Positives = 151/267 (56%), Gaps = 14/267 (5%)
Frame = +3
Query: 3 IELKTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCP 182
I KTPEE+W G P++Y L++FGCPAY+H+N+GKLE R+ K +F+GY GVKG+++WC
Sbjct: 630 IGFKTPEELWNGKPANYQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCK 689
Query: 183 KTSKIINSRDVIFDEMSMVNPRHENSS------PAHTTSGGSSEKVEXXXXXXXXXXXXX 344
K I SRDV+F E ++ E+ + A+ SG + KV
Sbjct: 690 DQGKCIVSRDVVFHESVLLKESAEHDAGLQDNPAANKRSGSETSKVNVELLTDKSSEKEA 749
Query: 345 XXXXPVXXXXXXXXXXXQ--------YSIAKNRQKRQIRPPQRYADTDFVAYALTVAEDT 500
+ Y +A++R +R++R P RY D +AYAL A++
Sbjct: 750 ASDDERATAESEEHEVSELPQADLQNYQLARDRVRREVRAPVRYGYADLIAYALLCADEV 809
Query: 501 CFDDEPATFDEAMRSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKKV 680
+ EPA F EAM S +W+ AM +EM+SL +NQTW L+ P ++++ KW+FK+
Sbjct: 810 TIE-EPANFSEAMESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFKRNE 868
Query: 681 QGAEHEGIRYKARLVAKGYTQRYGVDF 761
+ E +YKARLVA+G+TQR GVDF
Sbjct: 869 GIPDVEPPKYKARLVARGFTQREGVDF 895
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 194 bits (494), Expect = 2e-47
Identities = 103/243 (42%), Positives = 149/243 (61%), Gaps = 5/243 (2%)
Frame = +3
Query: 3 IELKTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCP 182
I+ KTP +VW+G+P++YS L++FGC AY HV+ KLEPR+ KCIFLGY SGVKG++LWCP
Sbjct: 601 IDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWCP 660
Query: 183 KTSKIINSRDVIFDEMSMVNPRHENSSPAHTTSGGS--SEKVEXXXXXXXXXXXXXXXXX 356
+T K++ SR+V+F E M++ + + P + S E +
Sbjct: 661 ETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINLDA 720
Query: 357 PV--XXXXXXXXXXXQYSIAKNRQKRQIRPPQRY-ADTDFVAYALTVAEDTCFDDEPATF 527
PV ++SIAK++ KR I+PP+RY + + VAYAL+VAE+ + EP+T+
Sbjct: 721 PVIEDSDSSIVQQSPKHSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTY 780
Query: 528 DEAMRSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKKVQGAEHEGIR 707
+A+ S WI AM +EM+SL KN TWELVK P +K + KW+FK+K + + R
Sbjct: 781 SDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEAR 840
Query: 708 YKA 716
YKA
Sbjct: 841 YKA 843
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 194 bits (494), Expect = 2e-47
Identities = 103/243 (42%), Positives = 149/243 (61%), Gaps = 5/243 (2%)
Frame = +3
Query: 3 IELKTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCP 182
I+ KTP +VW+G+P++YS L++FGC AY HV+ KLEPR+ KCIFLGY SGVKG++LWCP
Sbjct: 638 IDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWCP 697
Query: 183 KTSKIINSRDVIFDEMSMVNPRHENSSPAHTTSGGS--SEKVEXXXXXXXXXXXXXXXXX 356
+T K++ SR+V+F E M++ + + P + S E +
Sbjct: 698 ETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINLDA 757
Query: 357 PV--XXXXXXXXXXXQYSIAKNRQKRQIRPPQRY-ADTDFVAYALTVAEDTCFDDEPATF 527
PV ++SIAK++ KR I+PP+RY + + VAYAL+VAE+ + EP+T+
Sbjct: 758 PVIEDSDSSIVQQSPKHSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTY 817
Query: 528 DEAMRSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKKVQGAEHEGIR 707
+A+ S WI AM +EM+SL KN TWELVK P +K + KW+FK+K + + R
Sbjct: 818 SDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEAR 877
Query: 708 YKA 716
YKA
Sbjct: 878 YKA 880
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 194 bits (494), Expect = 2e-47
Identities = 111/256 (43%), Positives = 145/256 (56%), Gaps = 6/256 (2%)
Frame = +3
Query: 12 KTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCPKTS 191
KTP E+W+G P+DYS+L++FGC AY HV+ GKLEPR+ KC+FLGY SGVKG++LW P+T+
Sbjct: 636 KTPIEIWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLWNPETN 695
Query: 192 KIINSRDVIFDEMSMVNPRHENSSPAHTTSGGSSEK-----VEXXXXXXXXXXXXXXXXX 356
K SR+VIF+E M N +S P GGS E+ V+
Sbjct: 696 KTFMSRNVIFNEFVMFN----DSLPTDVIPGGSDEEQQYVSVQVEHVDDQETEIVGNDVN 751
Query: 357 PVXXXXXXXXXXXQYSIAKNRQKRQIRPPQR-YADTDFVAYALTVAEDTCFDDEPATFDE 533
IA R KR P R + D V YA + AE EPAT+ E
Sbjct: 752 DTVQHSPSVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSYAEQVENTLEPATYTE 811
Query: 534 AMRSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKKVQGAEHEGIRYK 713
A+ S ++WI A+ EEM+SL KN TWELV P +K V KW+FK+K + E R+K
Sbjct: 812 AVVSGDREKWISAIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFK 871
Query: 714 ARLVAKGYTQRYGVDF 761
RLVAKG++Q GVD+
Sbjct: 872 VRLVAKGFSQIAGVDY 887
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 192 bits (487), Expect = 1e-46
Identities = 101/235 (42%), Positives = 142/235 (60%), Gaps = 1/235 (0%)
Frame = +3
Query: 60 LKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCPKTSKIINSRDVIFDEMSMV 239
L++FGC AY HV+ GKLEPR+ KCIFLGY SGVKG++LWC +T K++ SR+V+F E M+
Sbjct: 528 LRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCSETKKVVISRNVVFHESVML 587
Query: 240 NPRHENSSPAHTTSGGSSEKVEXXXXXXXXXXXXXXXXXPVXXXXXXXXXXXQYSIAKNR 419
+ + + P + S ++ ++SIAK++
Sbjct: 588 HDKPSTNVPIESQEKASVQQ------------------------------SPKHSIAKDK 617
Query: 420 QKRQIRPPQRYAD-TDFVAYALTVAEDTCFDDEPATFDEAMRSSKSKEWIGAMTEEMKSL 596
KR RPPQRY + + VAYAL+VAE+ + EP+T+ EA+ S WI AM +EM SL
Sbjct: 618 PKRNTRPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMDSL 677
Query: 597 HKNQTWELVKPPVGQKIVGYKWVFKKKVQGAEHEGIRYKARLVAKGYTQRYGVDF 761
KN TW+LVK P +K++ KW+FK+K + + RYKA LVAKGY+Q G+DF
Sbjct: 678 EKNHTWKLVKLPKEKKLIHCKWIFKRKEGMSPTDEARYKAMLVAKGYSQIPGIDF 732
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 191 bits (486), Expect = 2e-46
Identities = 110/256 (42%), Positives = 143/256 (55%), Gaps = 6/256 (2%)
Frame = +3
Query: 12 KTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCPKTS 191
KTP E+W+G P+DYS+L++FGC AY HV+ KLEPR+ KC+FLGY GVKG++LW P+T+
Sbjct: 636 KTPIEIWSGMPADYSQLRVFGCTAYAHVDNEKLEPRAIKCLFLGYGLGVKGYKLWNPETN 695
Query: 192 KIINSRDVIFDEMSMVNPRHENSSPAHTTSGGSSEK-----VEXXXXXXXXXXXXXXXXX 356
K SR V+F+E M N +S P GGS E+ V+
Sbjct: 696 KTFMSRSVVFNESVMFN----DSLPTDVIPGGSDEEQQYVSVQVEHVDDQETEIVGNDVN 751
Query: 357 PVXXXXXXXXXXXQYSIAKNRQKRQIRPPQR-YADTDFVAYALTVAEDTCFDDEPATFDE 533
IA R KR P R + D V YA + AE EPAT+ E
Sbjct: 752 DTVQHSPPVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSCAEQVENTLEPATYTE 811
Query: 534 AMRSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKKVQGAEHEGIRYK 713
A+ S ++WI AM EEM+SL KN TWELV P +K V KW+FK+K + E R+K
Sbjct: 812 AVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFK 871
Query: 714 ARLVAKGYTQRYGVDF 761
ARLVAKG++Q GVD+
Sbjct: 872 ARLVAKGFSQIVGVDY 887
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 190 bits (482), Expect = 5e-46
Identities = 97/226 (42%), Positives = 137/226 (60%), Gaps = 1/226 (0%)
Frame = +3
Query: 3 IELKTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCP 182
I+ KTP +VW+G P++YS L++FGC AY HV+ GKLEPR+ KCIFLGYSSGVKG++LWCP
Sbjct: 468 IDKKTPIKVWSGFPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGYKLWCP 527
Query: 183 KTSKIINSRDVIFDEMSMVNPRHENSSPAHTTSGGSSEKVEXXXXXXXXXXXXXXXXXPV 362
+T K++ SR+V+F E M++ + + P + S +
Sbjct: 528 ETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQ---------------------- 565
Query: 363 XXXXXXXXXXXQYSIAKNRQKRQIRPPQRY-ADTDFVAYALTVAEDTCFDDEPATFDEAM 539
+ SIAK++ KR +PPQRY + + VAYAL+V E+ + EP+T+ EA+
Sbjct: 566 ---------FPKRSIAKDKPKRNTKPPQRYIEEANIVAYALSVTEEIEGNAEPSTYSEAI 616
Query: 540 RSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKK 677
S WI M +EM+SL KN TWELVK P +K + KW+FK+K
Sbjct: 617 VSDDCNRWITTMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRK 662
>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 348
Score = 188 bits (478), Expect = 1e-45
Identities = 106/266 (39%), Positives = 147/266 (55%), Gaps = 16/266 (6%)
Frame = +3
Query: 12 KTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCPKTS 191
K PEEVW GT D S L+ F C AYVHV + K PR+ K +F+GY G+KG+R+W P+
Sbjct: 33 KLPEEVWAGTKPDLSHLRRFECSAYVHVTQDKTSPRAVKGVFMGYPFGIKGYRVWLPEEG 92
Query: 192 KIINSRDVIFDEMSMVNPR-------------HENSSPAHTTSGGSSEKVEXXXXXXXXX 332
K SR+V+F+E+ + ++SS TS SSE E
Sbjct: 93 KCTTSRNVVFNEIELYKGTLSSPDGRTDYYDLEDSSSQGGETSSSSSESSENLEESETNE 152
Query: 333 XXXXXXXXPVXXXXXXXXXXXQYSIAKNRQKRQ-IRPPQRYADTDFVAYALTVAEDTCFD 509
Y +A+ R++R IRPP R+ D DFVAYAL ED +
Sbjct: 153 EVDGSENEQ---------SLDDYLLARERKRRSNIRPPSRFKDGDFVAYALATEEDLEIE 203
Query: 510 DEPATFDEAMRSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKK--VQ 683
EP +++EAM+ SK K+W AM EEM S K+ TW+L++ P QK++G KW+FK K +
Sbjct: 204 -EPKSYEEAMKRSKRKQWESAMKEEMDSHQKSHTWDLIEKPEKQKLIGCKWIFKLKPGIP 262
Query: 684 GAEHEGIRYKARLVAKGYTQRYGVDF 761
G E + RYK RLVAKG++Q+ G+D+
Sbjct: 263 GLEKQ--RYKVRLVAKGFSQQEGIDY 286
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 188 bits (478), Expect = 1e-45
Identities = 100/243 (41%), Positives = 144/243 (59%), Gaps = 5/243 (2%)
Frame = +3
Query: 3 IELKTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCP 182
I+ KTP EVW+ +P+ YS L++F C AY HV+ GKLEPR+ KCIFLGY SGVKG++LWCP
Sbjct: 461 IDKKTPIEVWSSSPAKYSDLRVFSCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCP 520
Query: 183 KTSKIINSRDVIFDEMSMVNPRHENSSPAHTTSGGS--SEKVEXXXXXXXXXXXXXXXXX 356
+T K++ +R+V+F E M++ + + P + S E +
Sbjct: 521 ETKKVVINRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDA 580
Query: 357 PV--XXXXXXXXXXXQYSIAKNRQKRQIRPPQRY-ADTDFVAYALTVAEDTCFDDEPATF 527
PV + SIAK+R KR +PP++Y + + V YAL+VAE+ + EP+T+
Sbjct: 581 PVIEDSDSSIVQQSPKRSIAKDRPKRNTKPPRKYIEEANIVTYALSVAEEIEGNTEPSTY 640
Query: 528 DEAMRSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKKVQGAEHEGIR 707
+A+ S WI AM +EM+SL KN TWELVK P +K + KW+FK+K + + R
Sbjct: 641 SDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEAR 700
Query: 708 YKA 716
YKA
Sbjct: 701 YKA 703
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
Length = 944
Score = 187 bits (476), Expect = 3e-45
Identities = 96/226 (42%), Positives = 136/226 (60%), Gaps = 1/226 (0%)
Frame = +3
Query: 3 IELKTPEEVWTGTPSDYSKLKIFGCPAYVHVNEGKLEPRSKKCIFLGYSSGVKGFRLWCP 182
I+ KTP +VW+G P++YS L++FGC AY HV+ GKLEPR+ KCIFLGYSSGVKG++LWCP
Sbjct: 468 IDKKTPIKVWSGFPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGYKLWCP 527
Query: 183 KTSKIINSRDVIFDEMSMVNPRHENSSPAHTTSGGSSEKVEXXXXXXXXXXXXXXXXXPV 362
+T K++ SR+V+F E M++ + + P + S +
Sbjct: 528 ETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQ---------------------- 565
Query: 363 XXXXXXXXXXXQYSIAKNRQKRQIRPPQRY-ADTDFVAYALTVAEDTCFDDEPATFDEAM 539
+ SIAK++ KR +PPQRY + + VAYAL+V E+ + EP+ + EA+
Sbjct: 566 ---------FPKRSIAKDKPKRNTKPPQRYIEEANIVAYALSVTEEIEGNAEPSIYSEAI 616
Query: 540 RSSKSKEWIGAMTEEMKSLHKNQTWELVKPPVGQKIVGYKWVFKKK 677
S WI M +EM+SL KN TWELVK P +K + KW+FK+K
Sbjct: 617 VSDDCNRWITTMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRK 662