BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00018263
         (1186 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   611   e-172
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   523   e-146
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   521   e-145
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   517   e-144
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     515   e-143
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     514   e-143
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   512   e-142
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   512   e-142
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   509   e-142
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           509   e-142
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     509   e-141
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa...   507   e-141
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...   504   e-140
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     479   e-133
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        479   e-133
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...   475   e-131
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               474   e-131
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                474   e-131
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   471   e-130
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   466   e-129

>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  611 bits (1575), Expect = e-172
 Identities = 299/393 (76%), Positives = 342/393 (87%)
 Frame = -2

Query: 1182 CKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVLD 1003
            CK +F+ K+GI   EP ++K+RLVAK            VFSPVVKHKSIR+LLAMVSV +
Sbjct: 1173 CKWLFKIKDGISEDEPPKYKSRLVAK------------VFSPVVKHKSIRVLLAMVSVFN 1220

Query: 1002 FELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRFD 823
             EL+QLDVKTAFLHGNLEE+IYM QPEGF+DSEK +HVC LKKSLYGLKQSPRQWYKRFD
Sbjct: 1221 LELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFD 1280

Query: 822  AFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFEM 643
            AF++SHEF+RN +D+CVY K L DGSF+YLLLYV+DMLIAAKN+ +I+ LK LLSSEFEM
Sbjct: 1281 AFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEM 1340

Query: 642  KDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDATT 463
            KDLGAAKKILGMEIWRDR  GLLYVSQQKYIEK++Q+F M++SKPVSTPLA HF  D +T
Sbjct: 1341 KDLGAAKKILGMEIWRDRDAGLLYVSQQKYIEKLMQAFHMDHSKPVSTPLAQHFKFDHST 1400

Query: 462  LPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWIM 283
            LPST+ E +YM  VPYSS VGSLMYAMVCTRPDLA AVSVVSRFMSNPGK HWEAVKWIM
Sbjct: 1401 LPSTDEEVEYMKSVPYSSVVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIM 1460

Query: 282  RYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQP 103
            RYLKG++ +CLVYG    +SGLVG+TDSD+GGDL+KRRSLTCYIFTL+GCAISW+A+LQP
Sbjct: 1461 RYLKGSSSVCLVYGNGDVSSGLVGFTDSDHGGDLMKRRSLTCYIFTLFGCAISWRASLQP 1520

Query: 102  TVALSTTDAEYMSLTEGVKEGIWLNGLIDSLGL 4
            TVALSTT+AEYMSLTEGVKEG+WLNG + SLGL
Sbjct: 1521 TVALSTTEAEYMSLTEGVKEGMWLNGFLGSLGL 1553


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  523 bits (1346), Expect = e-146
 Identities = 260/394 (65%), Positives = 320/394 (81%), Gaps = 1/394 (0%)
 Frame = -2

Query: 1182 CKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVLD 1003
            CK VF+KKEGI   E  ++KAR+VA+GF+Q+EG+D++E+FSPVV+H SIR+LLA+V+  +
Sbjct: 837  CKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQN 896

Query: 1002 FELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRFD 823
             ELEQLDVKTAFLHG LEE+IYM+QP+GF    K+NHVC LKKSLYGLKQSPRQWYKRFD
Sbjct: 897  LELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFD 956

Query: 822  AFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFEM 643
            ++++   + R+ +D CVY   L+D SF+YL+LYV+DMLIAAK K DI  LK LLS+EFEM
Sbjct: 957  SYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEM 1016

Query: 642  KDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDATT 463
            KDLGAA+KILGMEI RDR    L++SQ+ YI+KVL  F M++SKP+ TP AA+ +L A  
Sbjct: 1017 KDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMF 1076

Query: 462  LPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWIM 283
             P +E E++YMSRVPY+SAVGSLMYAMVCTRPDLAHAVSVVSRFM  PG+ HW+AVK I 
Sbjct: 1077 APQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIF 1136

Query: 282  RYLKGTADLCLVYGTNGFTSGLV-GYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQ 106
            RYL+GT+D+ L+YG  G T  LV GY+DSDY GD+  RRS+T Y+FTL G  +SWKATLQ
Sbjct: 1137 RYLRGTSDVGLIYG--GDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQ 1194

Query: 105  PTVALSTTDAEYMSLTEGVKEGIWLNGLIDSLGL 4
            PTV LSTT+AEYM+LTE  KEGIWL GL+  LGL
Sbjct: 1195 PTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGL 1228


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  521 bits (1341), Expect = e-145
 Identities = 257/391 (65%), Positives = 314/391 (80%)
 Frame = -2

Query: 1182 CKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVLD 1003
            CK +F++KEG+   EP +FK RLVAKGFSQ  G+D+++VFSPVVKH SIR   ++V++ D
Sbjct: 852  CKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHD 911

Query: 1002 FELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRFD 823
             ELEQLDVKT FLHG LEE+IYM QPEGF+   K+++VC LK+SLYGLKQSPRQWYKRFD
Sbjct: 912  LELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFD 971

Query: 822  AFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFEM 643
            +F+LSH F R+ FD+CVY K ++ GS +YLLLYV+DMLIAAK+K  I  LK  LSSEF+M
Sbjct: 972  SFMLSHGFKRSEFDSCVYIKFVN-GSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDM 1030

Query: 642  KDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDATT 463
            KDLGAAKKILGMEI RDR  GLL++SQQ YI+KVLQ F M+++KPVSTP+A HF L A  
Sbjct: 1031 KDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTPIAPHFKLSALQ 1090

Query: 462  LPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWIM 283
              ST+ + +YMSRVPYSSAVGSLMYAMVC+ PDL+HA+S+VSR+M+NPGK HW+AV+WI 
Sbjct: 1091 CASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMANPGKEHWKAVQWIF 1150

Query: 282  RYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQP 103
            RYL+GTAD CL +G      GLVGY DSD+  DL KRRSLT Y+FT+  CA+SWKATLQP
Sbjct: 1151 RYLRGTADACLKFGR--IDKGLVGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQP 1208

Query: 102  TVALSTTDAEYMSLTEGVKEGIWLNGLIDSL 10
             VA STT+AEYM++ E  KE +WL GL   L
Sbjct: 1209 VVAQSTTEAEYMAIAEACKESVWLKGLFAEL 1239


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  517 bits (1332), Expect = e-144
 Identities = 255/387 (65%), Positives = 318/387 (82%)
 Frame = -2

Query: 1182 CKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVLD 1003
            CK +F++KEGI   +  ++KARL+AKG+SQ  GIDF++VFSPVVKH SIR LL++V++ D
Sbjct: 1069 CKWIFKRKEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHD 1128

Query: 1002 FELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRFD 823
            +ELEQ+DVKTAFLHG LEE IYM QP+GF+   K+N VC LKKSLYGLKQSPRQWYKRFD
Sbjct: 1129 YELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFD 1188

Query: 822  AFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFEM 643
            +F+LS +F R+ +D+CVY K + DGS +YLLLYV+DMLIAAK+K++I  LK  LSSEFEM
Sbjct: 1189 SFMLSQKFRRSNYDSCVYLKVV-DGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEM 1247

Query: 642  KDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDATT 463
            KDLGAAKKILGMEI R R    LY+SQ+ YIEKVL+ F M+++KPVSTPLAAHF L +  
Sbjct: 1248 KDLGAAKKILGMEITRKRHSFKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDL 1307

Query: 462  LPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWIM 283
             P ++ + +YMSRVPYSSAVGSLMYAMVC+RPDL+HA+SVVSR+M+NPGK HW+AV+WI 
Sbjct: 1308 CPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIF 1367

Query: 282  RYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQP 103
            RYL+GT+  CL +G +    GLVGY DSD+ GDL + RSL  Y+FT+ GCA+SWKA+LQ 
Sbjct: 1368 RYLRGTSSACLQFGRS--RDGLVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQA 1425

Query: 102  TVALSTTDAEYMSLTEGVKEGIWLNGL 22
            TVALSTT+AEYM+++E  KE IWL GL
Sbjct: 1426 TVALSTTEAEYMAISEACKEAIWLRGL 1452


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  515 bits (1327), Expect = e-143
 Identities = 255/391 (65%), Positives = 318/391 (81%)
 Frame = -2

Query: 1182 CKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVLD 1003
            CK +F++KEG+   +  ++KARLVAKG+SQ  GIDF++VFSPVVKH SIR LL +V++ D
Sbjct: 834  CKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAMHD 893

Query: 1002 FELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRFD 823
            +ELEQ++VKTAFLHG LEE IYM QPEGF+   K+N VC LKKSLYGLKQSPRQWYKRFD
Sbjct: 894  YELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFD 953

Query: 822  AFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFEM 643
            +F+LS +F  + +D+CVY K + DGS +YLLLYV+DMLIAAK+K++I  LK  LSSEFEM
Sbjct: 954  SFMLSQKFRISNYDSCVYLKVV-DGSVIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEM 1012

Query: 642  KDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDATT 463
            KDLGAAKKILGMEI R+R  G LY+SQ+ YIEKVL+ F M+++KPVSTPLAAHF L +  
Sbjct: 1013 KDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDL 1072

Query: 462  LPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWIM 283
             P ++ + +YMSRVPYSSAVGSLMYAMVC RPDL+HA+SVV+R+M+NPGK HW+AV+WI 
Sbjct: 1073 CPLSDYDIEYMSRVPYSSAVGSLMYAMVCCRPDLSHALSVVNRYMANPGKEHWKAVQWIF 1132

Query: 282  RYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQP 103
            RYL+GT+  CL +  +    GLVGY DSD+ GDL +RRS+T Y+FT+ GCA+SWKA+LQ 
Sbjct: 1133 RYLRGTSSACLQFERS--RDGLVGYVDSDFAGDLDRRRSITGYVFTIGGCAVSWKASLQA 1190

Query: 102  TVALSTTDAEYMSLTEGVKEGIWLNGLIDSL 10
            TVALSTT+AEYM++ E  KE IWL GL   L
Sbjct: 1191 TVALSTTEAEYMAIFEACKEAIWLRGLYTEL 1221


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  514 bits (1325), Expect = e-143
 Identities = 257/391 (65%), Positives = 319/391 (81%)
 Frame = -2

Query: 1182 CKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVLD 1003
            CK +F++KEG+   +  ++KARLVAKG+SQ  GIDF++VFSPVVKH SIR LL++V++ D
Sbjct: 771  CKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHD 830

Query: 1002 FELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRFD 823
            +ELEQ+DVKTAFLHG LEE IYM QPEGF+   K+N VC LKKSLYGLKQSPRQWYKRFD
Sbjct: 831  YELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFD 890

Query: 822  AFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFEM 643
            +F+LS +F R+ +D+CVY K + DGS +YLLLYV+DMLIAAK+K++I  LK  LSSEFEM
Sbjct: 891  SFMLSQKFRRSNYDSCVYLKVV-DGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEM 949

Query: 642  KDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDATT 463
            KDLGAAKKILGMEI R+R  G LY+SQ+ YIEKVL  F M+++K VST LAAHF L +  
Sbjct: 950  KDLGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNMHDAKLVSTLLAAHFRLSSDL 1009

Query: 462  LPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWIM 283
             P +  + +YMSRVPYSSAV SLMYAMVC+RPDL+HA+SVVSR+M+NPGK HW+AV+WI 
Sbjct: 1010 CPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIF 1069

Query: 282  RYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQP 103
            RYL+GT+  CL +G +  + GLVGY DSD+ GDL +RRSLT Y+FT+ GCA+SWKA+LQ 
Sbjct: 1070 RYLRGTSSACLQFGRS--SDGLVGYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQA 1127

Query: 102  TVALSTTDAEYMSLTEGVKEGIWLNGLIDSL 10
            TVALSTT+AEYM+++E  KE IWL GL   L
Sbjct: 1128 TVALSTTEAEYMAISEACKEVIWLRGLYTEL 1158


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  512 bits (1318), Expect = e-142
 Identities = 253/391 (64%), Positives = 311/391 (79%)
 Frame = -2

Query: 1182 CKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVLD 1003
            CK +F++KEG+   EP ++KARLVA+G+SQ  G+D+++VFSPVVKH SIR  L++V+  D
Sbjct: 863  CKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHD 922

Query: 1002 FELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRFD 823
             ELEQLDVKTAFLHG LEE IYM QPEGF+   K+ +VC LK+SLYGLKQSPRQW KRFD
Sbjct: 923  LELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFD 982

Query: 822  AFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFEM 643
            +F+LSH F R+ +D+CVY K ++ GS +YLLLYV+DMLIAAK+K +I  LK LLSSEF+M
Sbjct: 983  SFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDM 1041

Query: 642  KDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDATT 463
            KDLG+AKKILGMEI RDR+ GLL++SQ  YI+KVLQ F M N+K VSTP+A HF L A  
Sbjct: 1042 KDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQ 1101

Query: 462  LPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWIM 283
             PS + E +YMSRVPYSSAVGSLMYAMVC+RPDL++A+S+VSR+MSNPGK HW AV+WI 
Sbjct: 1102 CPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIF 1161

Query: 282  RYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQP 103
            RYL+GT   CL +G      GL+GY DSDY  DL +RRSLT Y+FT+  CA+SW+ATLQ 
Sbjct: 1162 RYLRGTTYSCLKFGRT--DKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQS 1219

Query: 102  TVALSTTDAEYMSLTEGVKEGIWLNGLIDSL 10
             VALSTT+AEYM++ E  KE IWL GL   L
Sbjct: 1220 VVALSTTEAEYMAICEACKELIWLKGLYAEL 1250


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  512 bits (1318), Expect = e-142
 Identities = 253/391 (64%), Positives = 311/391 (79%)
 Frame = -2

Query: 1182 CKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVLD 1003
            CK +F++KEG+   EP ++KARLVA+G+SQ  G+D+++VFSPVVKH SIR  L++V+  D
Sbjct: 863  CKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHD 922

Query: 1002 FELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRFD 823
             ELEQLDVKTAFLHG LEE IYM QPEGF+   K+ +VC LK+SLYGLKQSPRQW KRFD
Sbjct: 923  LELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFD 982

Query: 822  AFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFEM 643
            +F+LSH F R+ +D+CVY K ++ GS +YLLLYV+DMLIAAK+K +I  LK LLSSEF+M
Sbjct: 983  SFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDM 1041

Query: 642  KDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDATT 463
            KDLG+AKKILGMEI RDR+ GLL++SQ  YI+KVLQ F M N+K VSTP+A HF L A  
Sbjct: 1042 KDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQ 1101

Query: 462  LPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWIM 283
             PS + E +YMSRVPYSSAVGSLMYAMVC+RPDL++A+S+VSR+MSNPGK HW AV+WI 
Sbjct: 1102 CPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIF 1161

Query: 282  RYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQP 103
            RYL+GT   CL +G      GL+GY DSDY  DL +RRSLT Y+FT+  CA+SW+ATLQ 
Sbjct: 1162 RYLRGTTYSCLKFGRT--DKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQS 1219

Query: 102  TVALSTTDAEYMSLTEGVKEGIWLNGLIDSL 10
             VALSTT+AEYM++ E  KE IWL GL   L
Sbjct: 1220 VVALSTTEAEYMAICEACKELIWLKGLYAEL 1250


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  509 bits (1311), Expect = e-142
 Identities = 252/391 (64%), Positives = 310/391 (79%)
 Frame = -2

Query: 1182 CKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVLD 1003
            CK +F++KEG+   EP ++KARLVA+G+SQ  G+D+++VFSPVVKH SIR  L++V+  D
Sbjct: 863  CKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHD 922

Query: 1002 FELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRFD 823
             ELEQLDVKTAFLHG LEE IYM QPEGF+   K+ +VC LK+SLYGLKQSPRQW KRFD
Sbjct: 923  LELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFD 982

Query: 822  AFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFEM 643
            +F+LSH F R+ +D+CVY K ++ GS +YLLLYV+DMLIAAK+K +I  LK LLSSEF+M
Sbjct: 983  SFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDM 1041

Query: 642  KDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDATT 463
            KDLG+AKKIL MEI RDR+ GLL++SQ  YI+KVLQ F M N+K VSTP+A HF L A  
Sbjct: 1042 KDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQ 1101

Query: 462  LPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWIM 283
             PST+ E +YMSRVPYSSAVGSLMYAMVC+RPDL++A+S+VSR+MSNPGK HW  V+WI 
Sbjct: 1102 CPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIF 1161

Query: 282  RYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQP 103
            RYL+GT   CL +G      GL+GY DSDY  DL +RRSLT Y+FT+  CA+SW+ATLQ 
Sbjct: 1162 RYLRGTTYSCLKFGRT--DKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQS 1219

Query: 102  TVALSTTDAEYMSLTEGVKEGIWLNGLIDSL 10
             VALSTT+AEYM++ E  KE IWL GL   L
Sbjct: 1220 VVALSTTEAEYMAICEACKELIWLKGLYAEL 1250


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  509 bits (1311), Expect = e-142
 Identities = 252/391 (64%), Positives = 311/391 (79%)
 Frame = -2

Query: 1182 CKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVLD 1003
            CK +F++KE +   EP ++KARLVA+G+SQ  G+D+++VFSPVVKH SIR  L++V+  D
Sbjct: 865  CKWIFKRKEALSLSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHD 924

Query: 1002 FELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRFD 823
             ELEQLDVKTAFLHG LEE IYM QPEGF+   K+ +VC LK+SLYGLKQSPRQW KRFD
Sbjct: 925  LELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFD 984

Query: 822  AFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFEM 643
            +F+LSH F R+ +D+CVY K ++ GS +YLLLYV+DMLIAAK+K +I  LK LLSSEF+M
Sbjct: 985  SFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDM 1043

Query: 642  KDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDATT 463
            KDLG+AKKILGMEI RDR+ GLL++SQ  YI+KVLQ F M N+K VSTP+A HF L A  
Sbjct: 1044 KDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQ 1103

Query: 462  LPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWIM 283
             PST+ E +YMSRVPYSSAVGSLMYAMVC+RPDL++A+S+VSR+MSNPGK HW A++WI 
Sbjct: 1104 CPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQWIF 1163

Query: 282  RYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQP 103
            RYL+GT   CL +G      GL+GY DSDY  DL +RRSLT Y+FT+  CA+SW+ATLQ 
Sbjct: 1164 RYLRGTTYSCLKFGRT--DKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQS 1221

Query: 102  TVALSTTDAEYMSLTEGVKEGIWLNGLIDSL 10
             VALSTT+AEYM++ E  KE IWL GL   L
Sbjct: 1222 VVALSTTEAEYMAICEACKELIWLKGLYAEL 1252


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  509 bits (1310), Expect = e-141
 Identities = 251/391 (64%), Positives = 316/391 (80%)
 Frame = -2

Query: 1182 CKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVLD 1003
            CK +F++K+G+   +  ++KARLVAKG+SQ  GIDF++VFSPV+KH SIR LL++V+V D
Sbjct: 741  CKWIFKRKKGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVLKHSSIRTLLSIVAVHD 800

Query: 1002 FELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRFD 823
            +ELEQ+DVKTAFLHG LEE IYM QPEGF+   K+N V  LKKSLYGLKQSPRQWYKRFD
Sbjct: 801  YELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVYRLKKSLYGLKQSPRQWYKRFD 860

Query: 822  AFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFEM 643
            +F+ S +F R+ +D+CVY K + DGS +YLLLYV+DMLIAAK+K++I  LK  LSSEFEM
Sbjct: 861  SFMFSQKFRRSNYDSCVYLKVV-DGSSIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEM 919

Query: 642  KDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDATT 463
            KDLGAAKKILGMEI R+R  G LY+SQ+ YIEKVL+ F M+++KPVSTPLAAHF L +  
Sbjct: 920  KDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDL 979

Query: 462  LPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWIM 283
             P ++ + +YMSRVPY S VGSLMYAMVC+R DL+HA+SVVSR+M+NPGK HW+ V+WI 
Sbjct: 980  CPQSDYDIEYMSRVPYLSVVGSLMYAMVCSRLDLSHALSVVSRYMANPGKEHWKVVQWIF 1039

Query: 282  RYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQP 103
            +YL+GT+  CL +G +    GLVGY DSD+ GDL +RRSLT Y+FT+ GCA+SWKA+LQ 
Sbjct: 1040 KYLRGTSSACLQFGRS--RDGLVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQA 1097

Query: 102  TVALSTTDAEYMSLTEGVKEGIWLNGLIDSL 10
            TVALSTT+ EYM+++E  KE IWL GL   L
Sbjct: 1098 TVALSTTEVEYMAISEACKEAIWLRGLYTEL 1128


>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
            gi|18542925|gb|AAL75759.1| Putative pol polyprotein
            [Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1005

 Score =  507 bits (1305), Expect = e-141
 Identities = 253/391 (64%), Positives = 309/391 (79%)
 Frame = -2

Query: 1182 CKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVLD 1003
            CK +F++KEG+   EP +FKA+LVAKGFSQ  G+D+++VFSPVVKH SIR   ++V++ D
Sbjct: 536  CKWIFKRKEGLSPSEPPRFKAKLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVAMHD 595

Query: 1002 FELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRFD 823
             ELEQLDVKTAFLHG LEE+IYM QPEGF+   K+ +VC LK+S YGLKQSPRQWYKRFD
Sbjct: 596  LELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEGYVCKLKRSFYGLKQSPRQWYKRFD 655

Query: 822  AFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFEM 643
             F+LSH F R+ FD+CVY K ++ GS +YLL YV+DMLIAAK+K  I  LK  LSSEF+M
Sbjct: 656  LFMLSHGFKRSEFDSCVYIKFVN-GSPIYLL-YVDDMLIAAKSKEQITTLKKQLSSEFDM 713

Query: 642  KDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDATT 463
            KDLGAAKKILGMEI RDR  GLL++SQQ YI+ VLQ F M+++K VS P+A HF L    
Sbjct: 714  KDLGAAKKILGMEITRDRNSGLLFLSQQSYIKNVLQRFNMHDAKLVSIPIAPHFKLSVLQ 773

Query: 462  LPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWIM 283
              ST+ + +YMSRVPYSSAVGSLMYAMVC+RPDL+HA+S+VSR+M+NPGK HW+AV+WI 
Sbjct: 774  CASTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMANPGKEHWKAVQWIF 833

Query: 282  RYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQP 103
            RYL+GTAD CL +G      GLVGY DSD+  DL KRRSLT Y+FT+  CA+SWKATLQP
Sbjct: 834  RYLRGTADACLKFGRT--DKGLVGYVDSDFAADLDKRRSLTGYVFTISSCAMSWKATLQP 891

Query: 102  TVALSTTDAEYMSLTEGVKEGIWLNGLIDSL 10
             VA STT+AEYM++ E  KE +WL GL   L
Sbjct: 892  VVAQSTTEAEYMAIAEACKESVWLKGLFAEL 922


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
            Group] gi|22655747|gb|AAN04164.1| Putative
            retrotransposon protein [Oryza sativa Japonica Group]
            gi|31431214|gb|AAP53029.1| retrotransposon protein,
            putative, Ty1-copia subclass, expressed [Oryza sativa
            Japonica Group]
          Length = 1229

 Score =  504 bits (1297), Expect = e-140
 Identities = 250/391 (63%), Positives = 307/391 (78%)
 Frame = -2

Query: 1182 CKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVLD 1003
            CK +F++KEG+    P +F ARLVAKGFSQ  G+D+++VFSPVVKH SIR    +V++ D
Sbjct: 798  CKWIFKRKEGLSPSGPPRFNARLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFCIVAMHD 857

Query: 1002 FELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRFD 823
             ELEQLDVKT FLHG LEE+IYM QPEGF+   K++ VC LK+SLYGLKQSPRQWYKRFD
Sbjct: 858  LELEQLDVKTIFLHGELEEEIYMDQPEGFIVPGKEDDVCKLKRSLYGLKQSPRQWYKRFD 917

Query: 822  AFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFEM 643
            +F+LSH F R+ FD+CVY K ++ GS +YLLLYV+DMLIAAK+K  I  LK  LSSEF+M
Sbjct: 918  SFMLSHGFKRSEFDSCVYIKFVN-GSHIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDM 976

Query: 642  KDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDATT 463
            KDL A+KKILGMEI RD   GLL++SQQ YI+KVLQ F ++++KPVSTP+A HF L A  
Sbjct: 977  KDLVASKKILGMEITRDINSGLLFLSQQSYIKKVLQRFNIHDAKPVSTPIAPHFKLSALQ 1036

Query: 462  LPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWIM 283
              ST+ + +YMSRVPYSS VGSLMYAMVC+RP L+HA+S+VSR+M+NPGK HW+AV+WI 
Sbjct: 1037 CTSTDEDVEYMSRVPYSSVVGSLMYAMVCSRPVLSHAMSLVSRYMANPGKEHWKAVQWIF 1096

Query: 282  RYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQP 103
            RYL+GTAD CL +G      GLVGY DSD+  DL KRRSLT Y+FT+  CA+SWKATLQP
Sbjct: 1097 RYLRGTADACLKFGRT--DKGLVGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQP 1154

Query: 102  TVALSTTDAEYMSLTEGVKEGIWLNGLIDSL 10
             VA ST +AEYM++ E  KE +WL GL   L
Sbjct: 1155 VVAQSTAEAEYMAIAEACKESVWLKGLFAEL 1185


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  479 bits (1234), Expect = e-133
 Identities = 238/394 (60%), Positives = 294/394 (74%)
 Frame = -2

Query: 1185 GCKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVL 1006
            GCK VFRKKEGI   +   +KARLVAKG+SQKEG+D+ E+FSPVVKH SIR+LL++ +  
Sbjct: 827  GCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQY 886

Query: 1005 DFELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRF 826
            D E+EQ+DVKTAFLHG+LEE IYMSQPEGF+++ K+N VC LKKSLYGLKQSPRQWYK F
Sbjct: 887  DMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPF 946

Query: 825  DAFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFE 646
            D ++L   + R  +D CVY     DG  + LLLYV+DMLIA ++   I  LK  L +EF+
Sbjct: 947  DTYMLKIGYTRCQYDCCVYYHVFEDGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFD 1006

Query: 645  MKDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDAT 466
            MKDLGAA+KILG+EI RDR  G +++SQ+KYI K+L+ F M  +K VS PLAAHF L A 
Sbjct: 1007 MKDLGAAQKILGIEIRRDRNAGKIWLSQEKYIMKILERFNMAEAKVVSIPLAAHFRLSAE 1066

Query: 465  TLPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWI 286
              PS + E D M  VPY+SAVG LMYAM+CTRPDLA A+SVVS++MSNPGK HWEAVKWI
Sbjct: 1067 QRPSDQKEIDMMKNVPYASAVGCLMYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWI 1126

Query: 285  MRYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQ 106
             +YLK T  L +++      + + G+ DSD+ GDL +RRS   Y+FT  G  +SWKATLQ
Sbjct: 1127 FKYLKNTRQLGIMFERRQGEACVAGFVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQ 1186

Query: 105  PTVALSTTDAEYMSLTEGVKEGIWLNGLIDSLGL 4
               ALSTT+AEYM+LTE  KE IWLNGL   LG+
Sbjct: 1187 AVTALSTTEAEYMALTEASKEAIWLNGLAGQLGV 1220


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  479 bits (1233), Expect = e-133
 Identities = 238/394 (60%), Positives = 305/394 (77%), Gaps = 1/394 (0%)
 Frame = -2

Query: 1182 CKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVLD 1003
            CK +F++ EGIP VEP ++KARLVA+GF+Q+EG+DF+E+FSPVVKH SIRILLAMV++LD
Sbjct: 860  CKWIFKRNEGIPDVEPPKYKARLVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLD 919

Query: 1002 FELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRFD 823
             ELEQ+DVKTAFLHGNLEEQI M+QPEGF   +K+++VCLL KSLYGLKQSPRQWY+RFD
Sbjct: 920  LELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFD 979

Query: 822  AFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFEM 643
             F++S  + R+ +D+CVY      G   YLLLYV+DMLIA+K K++I  LK LL +EFEM
Sbjct: 980  DFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEM 1039

Query: 642  KDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDATT 463
            KDLG AK+ILGM+I RDR  G L++SQ KYI+KVL+ F+M + KPV TPL   F L A T
Sbjct: 1040 KDLGNAKRILGMDIIRDRSAGTLFLSQGKYIKKVLERFEMQDCKPVQTPLGPQFKLSAAT 1099

Query: 462  LPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWIM 283
               T  +   M+  PY+ AVGSLMYAMVCTR D+A+AVSVVSR++S PGK HW AVKWIM
Sbjct: 1100 ---TSEDESQMNEFPYAQAVGSLMYAMVCTRSDIAYAVSVVSRYLSCPGKVHWNAVKWIM 1156

Query: 282  RYLKGTADLCLVYG-TNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQ 106
            RYLKG++   L+YG T      ++G+ DSD+ GDL +R+S + Y+F L  C ISWK++LQ
Sbjct: 1157 RYLKGSSTCGLLYGKTKSDKIEVMGFVDSDFAGDLDRRKSTSRYMFVLNSCLISWKSSLQ 1216

Query: 105  PTVALSTTDAEYMSLTEGVKEGIWLNGLIDSLGL 4
               ALS+T+AE+++ TE VKE +WL GL++ L L
Sbjct: 1217 SGGALSSTEAEFIATTEAVKEAMWLRGLLNELWL 1250


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  475 bits (1222), Expect = e-131
 Identities = 234/395 (59%), Positives = 300/395 (75%)
 Frame = -2

Query: 1185 GCKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVL 1006
            GCK +F++K GIPGVEP ++KARLVAKGFSQ+EGID+ E+FSPVVKH SIR LL++V   
Sbjct: 868  GCKWIFKRKAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQF 927

Query: 1005 DFELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRF 826
            D ELEQLDVKTAFLHGNL+E I MSQPEG+ D +    VCLLKKSLYGLKQSPRQW +RF
Sbjct: 928  DMELEQLDVKTAFLHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRF 987

Query: 825  DAFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFE 646
            D+F+++  + R+ ++ CVY+++L+DGS++YLLLYV+DMLIA++NK  I  LK  L+ EFE
Sbjct: 988  DSFMINSGYQRSKYNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFE 1047

Query: 645  MKDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDAT 466
            MKDLG A+KILGMEI R+R  G+L +SQ +Y+  VL++F M+ SK   TPL AHF L A 
Sbjct: 1048 MKDLGPARKILGMEITRNREQGILDLSQSEYVAGVLRAFGMDQSKVSQTPLGAHFKLRAA 1107

Query: 465  TLPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWI 286
               +   + +YM  VPY +A+GS+MY+M+ +RPDLA+ V VVSRFMS P K HW+AVKW+
Sbjct: 1108 NEKTLARDAEYMKLVPYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHWQAVKWV 1167

Query: 285  MRYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQ 106
            MRY+KGT D CL +  +     + GY DSDY  DL +RRS+T ++FT  G  ISWK+ LQ
Sbjct: 1168 MRYMKGTQDTCLRFKKDD-KFEIRGYCDSDYATDLDRRRSITGFVFTAGGNTISWKSGLQ 1226

Query: 105  PTVALSTTDAEYMSLTEGVKEGIWLNGLIDSLGLQ 1
              VALSTT+AEYM+L E VKE IWL GL   +G +
Sbjct: 1227 RVVALSTTEAEYMALAEAVKEAIWLRGLAAEMGFE 1261


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  474 bits (1219), Expect = e-131
 Identities = 240/391 (61%), Positives = 301/391 (76%)
 Frame = -2

Query: 1182 CKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVLD 1003
            CK +F++KEG+   +  ++KARLVAKG+SQ  GIDF+++FSPVVKH SIR LL++V++ D
Sbjct: 620  CKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDIFSPVVKHSSIRTLLSIVAMHD 679

Query: 1002 FELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRFD 823
            +ELEQ+DVKTAFLHG LEE IYM QPEGF+   K+N VC LKKSLYGLKQSPRQWYKRFD
Sbjct: 680  YELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFD 739

Query: 822  AFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFEM 643
            +F+LS +F R+ +D+CVY K + DGS +YLLLYV+DMLIAAK+K++I  LK  LSSEFEM
Sbjct: 740  SFMLSQKFRRSNYDSCVYLK-VVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEM 798

Query: 642  KDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDATT 463
            KDLGAAKKILGMEI R+R    LY+SQ+ YIEKVL+ F M+++KP+      +       
Sbjct: 799  KDLGAAKKILGMEITRERHSDKLYLSQKGYIEKVLRRFNMHDAKPIYVHSQIY------- 851

Query: 462  LPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWIM 283
                         VPYSSAVGSLMYAM+C+RPDL+HA+SVVSR+M NPGK HW+AV+WI 
Sbjct: 852  -------------VPYSSAVGSLMYAMICSRPDLSHALSVVSRYMVNPGKEHWKAVQWIF 898

Query: 282  RYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQP 103
            RYL GT+  CL +G +    GLVGY DSD+ GDL +RRSLT Y+FT+ GCA+SWKA+LQ 
Sbjct: 899  RYLHGTSSACLQFGRS--RDGLVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQA 956

Query: 102  TVALSTTDAEYMSLTEGVKEGIWLNGLIDSL 10
            TVALSTT+AEY++++E  KE IWL  L   L
Sbjct: 957  TVALSTTEAEYIAISEACKEAIWLRDLYTEL 987


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  474 bits (1219), Expect = e-131
 Identities = 240/391 (61%), Positives = 301/391 (76%)
 Frame = -2

Query: 1182 CKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVLD 1003
            CK +F++KEG+   +  ++KARLVAKG+SQ  GIDF+++FSPVVKH SIR LL++V++ D
Sbjct: 788  CKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDIFSPVVKHSSIRTLLSIVAMHD 847

Query: 1002 FELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRFD 823
            +ELEQ+DVKTAFLHG LEE IYM QPEGF+   K+N VC LKKSLYGLKQSPRQWYKRFD
Sbjct: 848  YELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFD 907

Query: 822  AFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFEM 643
            +F+LS +F R+ +D+CVY K + DGS +YLLLYV+DMLIAAK+K++I  LK  LSSEFEM
Sbjct: 908  SFMLSQKFRRSNYDSCVYLK-VVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEM 966

Query: 642  KDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDATT 463
            KDLGAAKKILGMEI R+R    LY+SQ+ YIEKVL+ F M+++KP+      +       
Sbjct: 967  KDLGAAKKILGMEITRERHSDKLYLSQKGYIEKVLRRFNMHDAKPIYVHSQIY------- 1019

Query: 462  LPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWIM 283
                         VPYSSAVGSLMYAM+C+RPDL+HA+SVVSR+M NPGK HW+AV+WI 
Sbjct: 1020 -------------VPYSSAVGSLMYAMICSRPDLSHALSVVSRYMVNPGKEHWKAVQWIF 1066

Query: 282  RYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQP 103
            RYL GT+  CL +G +    GLVGY DSD+ GDL +RRSLT Y+FT+ GCA+SWKA+LQ 
Sbjct: 1067 RYLHGTSSACLQFGRS--RDGLVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQA 1124

Query: 102  TVALSTTDAEYMSLTEGVKEGIWLNGLIDSL 10
            TVALSTT+AEY++++E  KE IWL  L   L
Sbjct: 1125 TVALSTTEAEYIAISEACKEAIWLRDLYTEL 1155


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  471 bits (1211), Expect = e-130
 Identities = 227/395 (57%), Positives = 301/395 (76%)
 Frame = -2

Query: 1185 GCKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVL 1006
            GC+ +F+ K GIPGVEPT+FKARLVAKG++Q+EG+D+ E+F+PVVKH SIRIL+++V   
Sbjct: 884  GCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVVDK 943

Query: 1005 DFELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRF 826
            D ELEQ+DVKT FLHG+LEE++YM QPEGF+    +N VC LKKSLYGLKQSPRQW KRF
Sbjct: 944  DLELEQMDVKTTFLHGDLEEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKRF 1003

Query: 825  DAFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFE 646
            D F+ S +F+R+  D CVY K +S+  F+YLLLYV+DMLIA  +K +I+ +K  LS+EFE
Sbjct: 1004 DRFMSSQQFIRSEHDACVYVKHVSEHDFIYLLLYVDDMLIAGASKAEINRVKEQLSTEFE 1063

Query: 645  MKDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDAT 466
            MKD+G A +ILG++I+RDR+ G+L +SQ+ YI KVL  F M+ +K  + P+ AHF L A 
Sbjct: 1064 MKDMGGASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFNMSGAKMTNAPVGAHFKLAAV 1123

Query: 465  TLPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWI 286
                  V+ D    VPYSSAVGS+MYAM+ TRPDLA+A+ ++SR+MS PG  HWEAVKW+
Sbjct: 1124 REEDECVDTDV---VPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKWV 1180

Query: 285  MRYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQ 106
            MRYLKG  DL LV+ T      + GY DS+Y  DL +RRS++ Y+FT+ G  +SWKA+LQ
Sbjct: 1181 MRYLKGAQDLNLVF-TKEKDFTVTGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASLQ 1239

Query: 105  PTVALSTTDAEYMSLTEGVKEGIWLNGLIDSLGLQ 1
            P VA+STT+AEY++L E  KE +W+ GL+  +G+Q
Sbjct: 1240 PVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQ 1274


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  466 bits (1200), Expect = e-129
 Identities = 237/391 (60%), Positives = 294/391 (75%)
 Frame = -2

Query: 1182 CKLVFRKKEGIPGVEPTQFKARLVAKGFSQKEGIDFHEVFSPVVKHKSIRILLAMVSVLD 1003
            CK +F++KEG+   EP +FKARLVAKGFSQ  G+D+++VFSPVVKH SIR   ++V++ D
Sbjct: 852  CKWIFKRKEGLSPSEPPRFKARLVAKGFSQIVGVDYNDVFSPVVKHSSIRTFFSIVAMHD 911

Query: 1002 FELEQLDVKTAFLHGNLEEQIYMSQPEGFLDSEKKNHVCLLKKSLYGLKQSPRQWYKRFD 823
             ELEQLDVKTAFLHG LEE+IYM QPEGF+   K+++VC LK+SLYGLKQSPRQWYKRFD
Sbjct: 912  LELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFD 971

Query: 822  AFILSHEFVRNPFDNCVYSKELSDGSFLYLLLYVEDMLIAAKNKTDIHDLKVLLSSEFEM 643
            +F+LSH F R+ FD+CVY K ++ GS +YLLLYV+D+LIAAK+K  I  LK  LSSEF+M
Sbjct: 972  SFMLSHGFKRSEFDSCVYIKFVN-GSPIYLLLYVDDILIAAKSKEQITTLKKQLSSEFDM 1030

Query: 642  KDLGAAKKILGMEIWRDRRVGLLYVSQQKYIEKVLQSFQMNNSKPVSTPLAAHFNLDATT 463
            KDLGAAKKILGMEI RD+  GLL++SQQ YI+KVLQ F M+++KPVSTP+A HF L A  
Sbjct: 1031 KDLGAAKKILGMEITRDKNSGLLFLSQQSYIKKVLQCFNMHDAKPVSTPIAPHFKLSALQ 1090

Query: 462  LPSTEVERDYMSRVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRFMSNPGKTHWEAVKWIM 283
              +T+ + +YMSRVPYSSAVGSLMYAMVC+RPDL+HA+S+VSR+M+NPGK HW+AV+WI 
Sbjct: 1091 CANTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMTNPGKEHWKAVQWIF 1150

Query: 282  RYLKGTADLCLVYGTNGFTSGLVGYTDSDYGGDLIKRRSLTCYIFTLYGCAISWKATLQP 103
            RYL+GTAD CL +G      GL+GY DSD+  DL KRRSLT                   
Sbjct: 1151 RYLRGTADACLKFGRT--DKGLIGYVDSDFAADLDKRRSLT------------------- 1189

Query: 102  TVALSTTDAEYMSLTEGVKEGIWLNGLIDSL 10
                     EYM++ E  KE +WL GL   L
Sbjct: 1190 ---------EYMAIAETCKESVWLKGLFAEL 1211