BLASTX nr result
ID: Rauwolfia21_contig00017287
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00017287
(236 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 130 2e-28
ref|XP_004229099.1| PREDICTED: uncharacterized protein LOC101259... 127 1e-27
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 122 4e-26
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 122 4e-26
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 122 5e-26
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 122 5e-26
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc... 121 8e-26
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 121 8e-26
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 121 8e-26
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 121 8e-26
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group] 121 8e-26
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 120 2e-25
gb|AAC02552.1| reverse transcriptase [Citrus limon] 119 3e-25
gb|AAW22873.1| putative polyprotein [Solanum lycopersicum] 119 3e-25
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 119 5e-25
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 119 5e-25
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 118 9e-25
gb|AAT72469.1| reverse transcriptase [Citrus sinensis] gi|502617... 118 9e-25
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 117 1e-24
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 117 1e-24
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 130 bits (326), Expect = 2e-28
Identities = 62/78 (79%), Positives = 67/78 (85%)
Frame = +2
Query: 2 VAQLNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQW 181
VA NLEL QLDVKTAFLHG+L+EEIYMTQPDGF+V GKEN VCKL KSLYGLKQSPRQW
Sbjct: 892 VAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQW 951
Query: 182 YKRFDQFMMGQKYTRSKY 235
YKRFD +M+ YTRS Y
Sbjct: 952 YKRFDSYMVKLGYTRSSY 969
>ref|XP_004229099.1| PREDICTED: uncharacterized protein LOC101259364 [Solanum
lycopersicum]
Length = 505
Score = 127 bits (320), Expect = 1e-27
Identities = 60/77 (77%), Positives = 67/77 (87%)
Frame = +2
Query: 5 AQLNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQWY 184
A+ N+EL QLDVKTAFLHG+L+EEIYMTQPDGF+V GKEN VCKL KSLYGLKQSPRQWY
Sbjct: 218 AKRNVELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWY 277
Query: 185 KRFDQFMMGQKYTRSKY 235
KRFD +M+ YTRS Y
Sbjct: 278 KRFDSYMVKLGYTRSSY 294
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 122 bits (307), Expect = 4e-26
Identities = 56/78 (71%), Positives = 66/78 (84%)
Frame = +2
Query: 2 VAQLNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQW 181
VA + EL Q+DVKTAFLHG+L+E+IYM QP+GF V+GKEN VC+L KSLYGLKQSPRQW
Sbjct: 952 VAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQW 1011
Query: 182 YKRFDQFMMGQKYTRSKY 235
YKRFD FM+ QK+ RS Y
Sbjct: 1012 YKRFDSFMLSQKFRRSNY 1029
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 122 bits (307), Expect = 4e-26
Identities = 56/78 (71%), Positives = 66/78 (84%)
Frame = +2
Query: 2 VAQLNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQW 181
VA + EL Q+DVKTAFLHG+L+E+IYM QP+GF V+GKEN VC+L KSLYGLKQSPRQW
Sbjct: 952 VAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQW 1011
Query: 182 YKRFDQFMMGQKYTRSKY 235
YKRFD FM+ QK+ RS Y
Sbjct: 1012 YKRFDSFMLSQKFRRSNY 1029
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 122 bits (306), Expect = 5e-26
Identities = 56/78 (71%), Positives = 65/78 (83%)
Frame = +2
Query: 2 VAQLNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQW 181
VA + EL Q+DVKTAFLHG+L+E+IYM QP+GF V GKEN VC+L KSLYGLKQSPRQW
Sbjct: 853 VAMYDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQW 912
Query: 182 YKRFDQFMMGQKYTRSKY 235
YKRFD FM+ QK+ RS Y
Sbjct: 913 YKRFDSFMLSQKFRRSNY 930
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 122 bits (306), Expect = 5e-26
Identities = 56/78 (71%), Positives = 65/78 (83%)
Frame = +2
Query: 2 VAQLNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQW 181
VA + EL Q+DVKTAFLHG+L+E+IYM QP+GF V GKEN VC+L KSLYGLKQSPRQW
Sbjct: 890 VAMYDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQW 949
Query: 182 YKRFDQFMMGQKYTRSKY 235
YKRFD FM+ QK+ RS Y
Sbjct: 950 YKRFDSFMLSQKFRRSNY 967
>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 983
Score = 121 bits (304), Expect = 8e-26
Identities = 56/78 (71%), Positives = 65/78 (83%)
Frame = +2
Query: 2 VAQLNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQW 181
VA + EL Q+DVKTAFLHG+L+E+IYM QP+GF V GKEN VC+L KSLYGLKQSPRQW
Sbjct: 659 VAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQW 718
Query: 182 YKRFDQFMMGQKYTRSKY 235
YKRFD FM+ QK+ RS Y
Sbjct: 719 YKRFDSFMLSQKFRRSNY 736
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 121 bits (304), Expect = 8e-26
Identities = 56/78 (71%), Positives = 65/78 (83%)
Frame = +2
Query: 2 VAQLNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQW 181
VA + EL Q+DVKTAFLHG+L+E+IYM QP+GF V GKEN VC+L KSLYGLKQSPRQW
Sbjct: 675 VAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQW 734
Query: 182 YKRFDQFMMGQKYTRSKY 235
YKRFD FM+ QK+ RS Y
Sbjct: 735 YKRFDSFMLSQKFRRSNY 752
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 121 bits (304), Expect = 8e-26
Identities = 56/78 (71%), Positives = 65/78 (83%)
Frame = +2
Query: 2 VAQLNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQW 181
VA + EL Q+DVKTAFLHG+L+E+IYM QP+GF V GKEN VC+L KSLYGLKQSPRQW
Sbjct: 843 VAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQW 902
Query: 182 YKRFDQFMMGQKYTRSKY 235
YKRFD FM+ QK+ RS Y
Sbjct: 903 YKRFDSFMLSQKFRRSNY 920
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 121 bits (304), Expect = 8e-26
Identities = 56/78 (71%), Positives = 65/78 (83%)
Frame = +2
Query: 2 VAQLNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQW 181
VA + EL Q+DVKTAFLHG+L+E+IYM QP+GF V GKEN VC+L KSLYGLKQSPRQW
Sbjct: 826 VAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQW 885
Query: 182 YKRFDQFMMGQKYTRSKY 235
YKRFD FM+ QK+ RS Y
Sbjct: 886 YKRFDSFMLSQKFRRSNY 903
>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
Length = 621
Score = 121 bits (304), Expect = 8e-26
Identities = 56/78 (71%), Positives = 65/78 (83%)
Frame = +2
Query: 2 VAQLNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQW 181
VA + EL Q+DVKTAFLHG+L+E+IYM QP+GF V GKEN VC+L KSLYGLKQSPRQW
Sbjct: 303 VAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQW 362
Query: 182 YKRFDQFMMGQKYTRSKY 235
YKRFD FM+ QK+ RS Y
Sbjct: 363 YKRFDSFMLSQKFRRSNY 380
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 120 bits (301), Expect = 2e-25
Identities = 56/78 (71%), Positives = 64/78 (82%)
Frame = +2
Query: 2 VAQLNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQW 181
VA + EL Q+DVKTAFLHG+L+E+IYM QP GF V GKEN VC+L KSLYGLKQSPRQW
Sbjct: 1124 VAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQW 1183
Query: 182 YKRFDQFMMGQKYTRSKY 235
YKRFD FM+ QK+ RS Y
Sbjct: 1184 YKRFDSFMLSQKFRRSNY 1201
>gb|AAC02552.1| reverse transcriptase [Citrus limon]
Length = 93
Score = 119 bits (299), Expect = 3e-25
Identities = 54/69 (78%), Positives = 62/69 (89%)
Frame = +2
Query: 29 QLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQWYKRFDQFMM 208
Q+DVKTAFLHGDL+E+IYM QP GFK GKEN VC+L KSLYGLKQSPRQWYKRFDQF+
Sbjct: 1 QMDVKTAFLHGDLEEKIYMIQPCGFKAAGKENHVCRLIKSLYGLKQSPRQWYKRFDQFIQ 60
Query: 209 GQKYTRSKY 235
GQK+TRS++
Sbjct: 61 GQKFTRSEH 69
>gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]
Length = 687
Score = 119 bits (299), Expect = 3e-25
Identities = 55/73 (75%), Positives = 62/73 (84%)
Frame = +2
Query: 11 LNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQWYKR 190
LNLEL QLDVKTAFLHGDL EEIYM QP+GF+V GKEN+VCKL KSLYGLKQ+PRQWY +
Sbjct: 274 LNLELEQLDVKTAFLHGDLHEEIYMEQPEGFEVKGKENFVCKLKKSLYGLKQAPRQWYHK 333
Query: 191 FDQFMMGQKYTRS 229
FD FM +Y R+
Sbjct: 334 FDSFMSNNEYKRT 346
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 119 bits (297), Expect = 5e-25
Identities = 55/78 (70%), Positives = 66/78 (84%)
Frame = +2
Query: 2 VAQLNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQW 181
VA +LEL QLDVKTAFLHG+L+EEIYM QP+GF V GKE++VCKL +SLYGLKQSPRQW
Sbjct: 907 VAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQW 966
Query: 182 YKRFDQFMMGQKYTRSKY 235
YKRFD FM+ + RS++
Sbjct: 967 YKRFDSFMLSHGFKRSEF 984
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 119 bits (297), Expect = 5e-25
Identities = 55/78 (70%), Positives = 66/78 (84%)
Frame = +2
Query: 2 VAQLNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQW 181
VA +LEL QLDVKTAFLHG+L+EEIYM QP+GF V GKE++VCKL +SLYGLKQSPRQW
Sbjct: 760 VAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQW 819
Query: 182 YKRFDQFMMGQKYTRSKY 235
YKRFD FM+ + RS++
Sbjct: 820 YKRFDSFMLSHGFKRSEF 837
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 118 bits (295), Expect = 9e-25
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = +2
Query: 2 VAQLNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQW 181
VA + EL QLDVKTAFLHG+L+E+IYM QP+GF V GKEN VC+L KSLYGLKQSPRQW
Sbjct: 764 VAIHDYELEQLDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLDKSLYGLKQSPRQW 823
Query: 182 YKRFDQFMMGQKYTRSKY 235
YKRFD FM+ Q + RS++
Sbjct: 824 YKRFDSFMLSQNFKRSQF 841
>gb|AAT72469.1| reverse transcriptase [Citrus sinensis] gi|50261796|gb|AAT72470.1|
reverse transcriptase [Citrus trifoliata]
Length = 91
Score = 118 bits (295), Expect = 9e-25
Identities = 54/67 (80%), Positives = 60/67 (89%)
Frame = +2
Query: 35 DVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQWYKRFDQFMMGQ 214
DVKTAFLHGDL+EEIYM QP GFKV G EN VC+L KSLYGLKQSPRQWYKRFDQF+ GQ
Sbjct: 1 DVKTAFLHGDLEEEIYMIQPCGFKVAGNENHVCRLIKSLYGLKQSPRQWYKRFDQFIQGQ 60
Query: 215 KYTRSKY 235
K+TRS++
Sbjct: 61 KFTRSEH 67
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 117 bits (294), Expect = 1e-24
Identities = 55/78 (70%), Positives = 64/78 (82%)
Frame = +2
Query: 2 VAQLNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQW 181
VA +LEL QLDVKTAFLHG+L+E+IYM QP+GF V GKE +VCKL +SLYGLKQSPRQW
Sbjct: 918 VASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQW 977
Query: 182 YKRFDQFMMGQKYTRSKY 235
KRFD FM+ + RSKY
Sbjct: 978 NKRFDSFMLSHSFKRSKY 995
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 117 bits (294), Expect = 1e-24
Identities = 55/78 (70%), Positives = 64/78 (82%)
Frame = +2
Query: 2 VAQLNLELAQLDVKTAFLHGDLKEEIYMTQPDGFKVVGKENWVCKLSKSLYGLKQSPRQW 181
VA +LEL QLDVKTAFLHG+L+E+IYM QP+GF V GKE +VCKL +SLYGLKQSPRQW
Sbjct: 918 VASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQW 977
Query: 182 YKRFDQFMMGQKYTRSKY 235
KRFD FM+ + RSKY
Sbjct: 978 NKRFDSFMLSHSFKRSKY 995