BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00017191
         (1751 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006344900.1| PREDICTED: DNA-directed RNA polymerases I an...   550   e-154
gb|EOY11969.1| RNA polymerase I subunit 43 isoform 1 [Theobroma ...   550   e-154
ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I an...   546   e-152
ref|XP_004251939.1| PREDICTED: DNA-directed RNA polymerases I an...   544   e-152
ref|XP_006474843.1| PREDICTED: DNA-directed RNA polymerases I an...   522   e-145
ref|XP_006452630.1| hypothetical protein CICLE_v10008413mg [Citr...   521   e-145
ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, ...   513   e-142
ref|XP_002300385.1| DNA-directed RNA polymerase family protein [...   509   e-141
gb|EPS59249.1| hypothetical protein M569_15560, partial [Genlise...   508   e-141
gb|EXB51013.1| DNA-directed RNA polymerases I and III subunit RP...   488   e-135
ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I an...   483   e-134
ref|XP_006414263.1| hypothetical protein EUTSA_v10025407mg [Eutr...   480   e-133
ref|XP_003532185.1| PREDICTED: DNA-directed RNA polymerases I an...   480   e-133
ref|NP_001242652.1| uncharacterized protein LOC100786622 [Glycin...   479   e-132
ref|NP_176261.1| RNA polymerase I subunit 43 [Arabidopsis thalia...   478   e-132
gb|EOY11972.1| RNA polymerase I subunit 43 isoform 4 [Theobroma ...   477   e-132
ref|XP_004488284.1| PREDICTED: DNA-directed RNA polymerases I an...   476   e-131
ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata] ...   476   e-131
ref|XP_004498147.1| PREDICTED: DNA-directed RNA polymerases I an...   473   e-130
ref|XP_002453469.1| hypothetical protein SORBIDRAFT_04g006420 [S...   473   e-130

>ref|XP_006344900.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
            [Solanum tuberosum]
          Length = 393

 Score =  550 bits (1418), Expect = e-154
 Identities = 284/413 (68%), Positives = 323/413 (78%), Gaps = 2/413 (0%)
 Frame = +3

Query: 261  SSEDGTQTAT-PKIPVWELPDVPTGELPPHLDLQRTRVFCNKDAPTQTQKFQYSGAYAAM 437
            S    TQ  T  K+ VW+LPD+P G+LPPH++LQRTRV C   APT T+   YSGAYAAM
Sbjct: 12   SESTSTQEETFTKVSVWDLPDLPKGKLPPHIELQRTRVLCGSLAPTNTENVNYSGAYAAM 71

Query: 438  GVDNSLRLDEFRKDFRVEFVXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEEEKYTLEF 617
            GVDNS+R ++FR +F+VE V                            +LEE+E   LEF
Sbjct: 72   GVDNSVRFEQFRNNFKVEIV----------------------------RLEEDE---LEF 100

Query: 618  DMIGIDASLANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIADPRLFE 797
            DMIGID SLANAFRRILIAELPTMAIEKVLIANNTS+IQDEVLAHRLGLIPI  DPRLFE
Sbjct: 101  DMIGIDPSLANAFRRILIAELPTMAIEKVLIANNTSIIQDEVLAHRLGLIPIEVDPRLFE 160

Query: 798  YMSENDVPNEKNTIVFKLHARCERGSSRITVKSDELKWLPGGSEFLLATENSASDTSGKQ 977
            YMSENDVPNEKNTIVFKLHARC +GS R+ V S ELKWLP GSE +L TE+SAS +S K 
Sbjct: 161  YMSENDVPNEKNTIVFKLHARCTKGSDRLRVLSSELKWLPNGSELILGTEHSASSSSAKP 220

Query: 978  KTYTSFNRSQDSLPEISNNPITVYP-DITIARLGPGQEIELEAHAVKGVGKTHAKWSPVA 1154
            KTYTSF+ SQD+LPE SN+PI     DI +A+LGPGQEIELEAHAVKG+GKTHAKWSPVA
Sbjct: 221  KTYTSFSCSQDTLPEFSNDPIAPKDADIIVAKLGPGQEIELEAHAVKGMGKTHAKWSPVA 280

Query: 1155 TAWYRMLPEVVLLQEVKGKKAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRKCTLCRECV 1334
            TAWYRMLPEVVLL++++  +AE LVKKCP+ VFD+EDIG   +RA V  PR CTLCREC+
Sbjct: 281  TAWYRMLPEVVLLRDIEDDEAEALVKKCPVKVFDIEDIGKGKKRATVARPRICTLCRECI 340

Query: 1335 RGNGWEEIVALRRVKDHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITELS 1493
            R  GW++ VALRRV DHFIF+IESTGALPPEVLFTEAVK LE+KCERVITELS
Sbjct: 341  REEGWDKNVALRRVNDHFIFTIESTGALPPEVLFTEAVKILEEKCERVITELS 393


>gb|EOY11969.1| RNA polymerase I subunit 43 isoform 1 [Theobroma cacao]
          Length = 383

 Score =  550 bits (1416), Expect = e-154
 Identities = 280/401 (69%), Positives = 315/401 (78%), Gaps = 1/401 (0%)
 Frame = +3

Query: 294  KIPVWELPDVPTGELPPHLDLQRTRVFCNKDAPTQTQKFQYSGAYAAMGVDNSLRLDEFR 473
            K  +W+LPDVP G+LPPHL+LQRTRV CNKDAP  T+   YSGAYA+MGVDNSLRLD F 
Sbjct: 14   KFSIWDLPDVPAGQLPPHLELQRTRVLCNKDAPIHTESVLYSGAYASMGVDNSLRLDHFC 73

Query: 474  KDFRVEFVXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEEEKYTLEFDMIGIDASLANA 653
             +FRVE V                            +L EE+   +EFDMIGIDA++ANA
Sbjct: 74   HNFRVEVV----------------------------RLTEED---MEFDMIGIDAAIANA 102

Query: 654  FRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIADPRLFEYMSENDVPNEKN 833
            FRRILIAELPTMAIEKVLIANNTSV+QDEVLAHRLGLIPI  DPRLFEYMSEND PNEKN
Sbjct: 103  FRRILIAELPTMAIEKVLIANNTSVVQDEVLAHRLGLIPISVDPRLFEYMSENDQPNEKN 162

Query: 834  TIVFKLHARCERGSSRITVKSDELKWLPGGSEFLLATENSASDTSGKQKTYTSFNRSQDS 1013
            TIVFKLH  C+RGS RITVKSDELKWLP GSE +  +   ASD++ K +TYTSF+ SQD+
Sbjct: 163  TIVFKLHVHCKRGSPRITVKSDELKWLPNGSELIKESRKVASDSASKPETYTSFSCSQDT 222

Query: 1014 LPEISNNPITV-YPDITIARLGPGQEIELEAHAVKGVGKTHAKWSPVATAWYRMLPEVVL 1190
            LPE +NNPI   YPDI I++LGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPEVVL
Sbjct: 223  LPEFANNPIAPKYPDIIISKLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVL 282

Query: 1191 LQEVKGKKAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRKCTLCRECVRGNGWEEIVALR 1370
            L+EV+   AE L  KCP+ VFD+ED+G   +RA V  PR CTLCREC+R   WE+ VA+ 
Sbjct: 283  LEEVEDDLAEGLKSKCPVNVFDIEDLGKGKKRATVARPRACTLCRECIRDEEWEKRVAIH 342

Query: 1371 RVKDHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITELS 1493
            RVKDHFIF+IESTGALPPEVLFTEAVK LEDKCERVITELS
Sbjct: 343  RVKDHFIFTIESTGALPPEVLFTEAVKILEDKCERVITELS 383


>ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
            [Vitis vinifera] gi|296089944|emb|CBI39763.3| unnamed
            protein product [Vitis vinifera]
          Length = 372

 Score =  546 bits (1406), Expect = e-152
 Identities = 275/399 (68%), Positives = 320/399 (80%), Gaps = 1/399 (0%)
 Frame = +3

Query: 300  PVWELPDVPTGELPPHLDLQRTRVFCNKDAPTQTQKFQYSGAYAAMGVDNSLRLDEFRKD 479
            P  ++PDVP G+LPPH++LQRTRV CN DAPT T+  QYSGAY++MGVDNSLR+D+F  +
Sbjct: 5    PALDMPDVPKGQLPPHIELQRTRVLCNFDAPTHTENVQYSGAYSSMGVDNSLRMDQFCNN 64

Query: 480  FRVEFVXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEEEKYTLEFDMIGIDASLANAFR 659
            FRVE +                            +L E++   +EFDMIGID S+ANAFR
Sbjct: 65   FRVEVI----------------------------RLSEDD---MEFDMIGIDPSIANAFR 93

Query: 660  RILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIADPRLFEYMSENDVPNEKNTI 839
            RILIAELPTMAIEKVLIANNTS++QDEVLAHRLGLIPI ADPRLF+ +SEND PNEKNTI
Sbjct: 94   RILIAELPTMAIEKVLIANNTSIVQDEVLAHRLGLIPINADPRLFDDLSENDTPNEKNTI 153

Query: 840  VFKLHARCERGSSRITVKSDELKWLPGGSEFLLATENSASDTSGKQKTYTSFNRSQDSLP 1019
            VF LH RCERG  R+TVKS+ELKWLP GSEF LATEN+ S ++ K KTYTSF+ SQDSLP
Sbjct: 154  VFNLHVRCERGGPRLTVKSNELKWLPHGSEFPLATENTTSSSTSKPKTYTSFSCSQDSLP 213

Query: 1020 EISNNPI-TVYPDITIARLGPGQEIELEAHAVKGVGKTHAKWSPVATAWYRMLPEVVLLQ 1196
            E S+  I   +PDI IA+LGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPEVVLLQ
Sbjct: 214  EFSDKSIGPKHPDIIIAKLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQ 273

Query: 1197 EVKGKKAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRKCTLCRECVRGNGWEEIVALRRV 1376
            E++ +KAEELVKKCP+ VFD+EDI    ++A V  PR CTLCREC+RG+ W++ VA+RRV
Sbjct: 274  EIEDEKAEELVKKCPVNVFDIEDIAKGKKKATVARPRACTLCRECIRGDDWDKHVAIRRV 333

Query: 1377 KDHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITELS 1493
            K+HFIF+IESTGALPPEVLF EAVK LEDKCERVITELS
Sbjct: 334  KNHFIFTIESTGALPPEVLFNEAVKVLEDKCERVITELS 372


>ref|XP_004251939.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
            [Solanum lycopersicum]
          Length = 393

 Score =  544 bits (1401), Expect = e-152
 Identities = 280/412 (67%), Positives = 320/412 (77%), Gaps = 4/412 (0%)
 Frame = +3

Query: 270  DGTQTATP---KIPVWELPDVPTGELPPHLDLQRTRVFCNKDAPTQTQKFQYSGAYAAMG 440
            +GT T      K+ VW+LPD+P G+LPPH++LQRTRV C   APT T+   YSGAYAAMG
Sbjct: 13   EGTSTQEETFTKVSVWDLPDLPKGKLPPHIELQRTRVLCGSLAPTNTENVNYSGAYAAMG 72

Query: 441  VDNSLRLDEFRKDFRVEFVXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEEEKYTLEFD 620
            VDNS+R ++FR +F+VE V                            +LEE+E   LEFD
Sbjct: 73   VDNSVRFEQFRDNFKVEIV----------------------------RLEEDE---LEFD 101

Query: 621  MIGIDASLANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIADPRLFEY 800
            MIGID SLANAFRRILIAELPTMAIEKVLIANNTS+IQDEVLAHRLGLIPI  DPRLFEY
Sbjct: 102  MIGIDPSLANAFRRILIAELPTMAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEY 161

Query: 801  MSENDVPNEKNTIVFKLHARCERGSSRITVKSDELKWLPGGSEFLLATENSASDTSGKQK 980
            MSENDVPNEKNTIVFKLH RC +GS R+ V S ELKWLP GSE +L TE+SAS +S K K
Sbjct: 162  MSENDVPNEKNTIVFKLHVRCTKGSDRLRVLSSELKWLPNGSELILGTEHSASSSSAKPK 221

Query: 981  TYTSFNRSQDSLPEISNNPITVYP-DITIARLGPGQEIELEAHAVKGVGKTHAKWSPVAT 1157
            TYTSF+ SQD+ PE S+ PI     DI +A+LGPGQEIELEAHAVKG+GKTHAKWSPVAT
Sbjct: 222  TYTSFSCSQDTRPEFSDEPIAPKDADIIVAKLGPGQEIELEAHAVKGMGKTHAKWSPVAT 281

Query: 1158 AWYRMLPEVVLLQEVKGKKAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRKCTLCRECVR 1337
            AWYRMLPEV+LL++++  +AE LVKKCPL VFD+EDIG   +RA V  PR CTLCREC+R
Sbjct: 282  AWYRMLPEVLLLRDIEDDEAEALVKKCPLKVFDIEDIGKGKKRATVARPRACTLCRECIR 341

Query: 1338 GNGWEEIVALRRVKDHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITELS 1493
              GW++ VALRRV DHFIF+IESTGALPPEVLFTEAVK LE+KCERVITELS
Sbjct: 342  EEGWDKNVALRRVNDHFIFTIESTGALPPEVLFTEAVKILEEKCERVITELS 393


>ref|XP_006474843.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
            [Citrus sinensis]
          Length = 382

 Score =  522 bits (1344), Expect = e-145
 Identities = 270/398 (67%), Positives = 308/398 (77%), Gaps = 1/398 (0%)
 Frame = +3

Query: 303  VWELPDVPTGELPPHLDLQRTRVFCNKDAPTQTQKFQYSGAYAAMGVDNSLRLDEFRKDF 482
            +W+LPDVP  +LPPH++ QRTRV CN DAP  T+   YSGAYA+MGVDNSL+LD F  +F
Sbjct: 18   IWDLPDVPQ-KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNF 76

Query: 483  RVEFVXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEEEKYTLEFDMIGIDASLANAFRR 662
            RVE +                                  K  +EFD+IGIDA++ANAFRR
Sbjct: 77   RVEVIRLT-------------------------------KDDMEFDLIGIDAAIANAFRR 105

Query: 663  ILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIADPRLFEYMSENDVPNEKNTIV 842
            ILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII DPRLFEYMSEND  NEKNTIV
Sbjct: 106  ILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIV 165

Query: 843  FKLHARCERGSSRITVKSDELKWLPGGSEFLLATENSASDTSGKQKTYTSFNRSQDSLPE 1022
            FKLH  CERG  R+TVK++ELKWLP GSE  L T+  ++  S K +TYTSF+ SQDSLPE
Sbjct: 166  FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPDSNPLS-KPRTYTSFSSSQDSLPE 224

Query: 1023 ISNNPITVYPDITIARLGPGQEIELEAHAVKGVGKTHAKWSPVATAWYRMLPEVVLLQEV 1202
             SNNPI    DITIARLGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPE+VLL++V
Sbjct: 225  FSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 284

Query: 1203 KGKKAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRKCTLCRECVR-GNGWEEIVALRRVK 1379
            + + AE+LVK CP+ VFD+EDIG+  +RA V  PR CTLCREC+R G  WE+ V++RRVK
Sbjct: 285  EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVAQPRACTLCRECLRCGEEWEKRVSIRRVK 344

Query: 1380 DHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITELS 1493
            DHFIF+IESTGAL PE LFTEAVK LEDKCERVITELS
Sbjct: 345  DHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 382


>ref|XP_006452630.1| hypothetical protein CICLE_v10008413mg [Citrus clementina]
            gi|557555856|gb|ESR65870.1| hypothetical protein
            CICLE_v10008413mg [Citrus clementina]
          Length = 421

 Score =  521 bits (1342), Expect = e-145
 Identities = 270/398 (67%), Positives = 307/398 (77%), Gaps = 1/398 (0%)
 Frame = +3

Query: 303  VWELPDVPTGELPPHLDLQRTRVFCNKDAPTQTQKFQYSGAYAAMGVDNSLRLDEFRKDF 482
            +W+LPDVP  +LPPH++ QRTRV CN DAP  T+   YSGAYA+MGVDNSL+LD F  +F
Sbjct: 57   IWDLPDVPQ-KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNF 115

Query: 483  RVEFVXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEEEKYTLEFDMIGIDASLANAFRR 662
            RVE +                                  K  +EFD+IGIDA++ANAFRR
Sbjct: 116  RVEVIRLT-------------------------------KDDMEFDLIGIDAAIANAFRR 144

Query: 663  ILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIADPRLFEYMSENDVPNEKNTIV 842
            ILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII DPRLFEYMSEND  NEKNTIV
Sbjct: 145  ILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIV 204

Query: 843  FKLHARCERGSSRITVKSDELKWLPGGSEFLLATENSASDTSGKQKTYTSFNRSQDSLPE 1022
            FKLH  CERG  R+TVK++ELKWLP GSE  L T+   S+ S K +TYTSF+ SQD LPE
Sbjct: 205  FKLHVLCERGGPRLTVKTNELKWLPNGSELPLETKPD-SNPSSKPRTYTSFSSSQDLLPE 263

Query: 1023 ISNNPITVYPDITIARLGPGQEIELEAHAVKGVGKTHAKWSPVATAWYRMLPEVVLLQEV 1202
             SNNPI    DITIARLGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPE+VLL++V
Sbjct: 264  FSNNPIRPMLDITIARLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEIVLLEDV 323

Query: 1203 KGKKAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRKCTLCRECVR-GNGWEEIVALRRVK 1379
            + + AE+LVK CP+ VFD+EDIG+  +RA V  PR CTLCREC+R G  WE+ V++RRVK
Sbjct: 324  EDEDAEKLVKTCPVNVFDIEDIGSGKKRATVARPRACTLCRECLRCGEEWEKRVSIRRVK 383

Query: 1380 DHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITELS 1493
            DHFIF+IESTGAL PE LFTEAVK LEDKCERVITELS
Sbjct: 384  DHFIFTIESTGALSPETLFTEAVKILEDKCERVITELS 421


>ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
            communis] gi|223538024|gb|EEF39637.1| DNA-directed RNA
            polymerase I/III subunits, putative [Ricinus communis]
          Length = 374

 Score =  513 bits (1320), Expect = e-142
 Identities = 266/412 (64%), Positives = 311/412 (75%), Gaps = 1/412 (0%)
 Frame = +3

Query: 261  SSEDGTQTATPKIPVWELPDVPTGELPPHLDLQRTRVFCNKDAPTQTQKFQYSGAYAAMG 440
            SS+   +    K  +W+LPDVP G+LPPHL LQRTRV C  DAP  T    YSGAYA++G
Sbjct: 2    SSKQENKEKNKKFSIWDLPDVPMGQLPPHLQLQRTRVVCKSDAPIHTDNIVYSGAYASIG 61

Query: 441  VDNSLRLDEFRKDFRVEFVXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEEEKYTLEFD 620
            VDNSL+LD FR +F+VE +                            QL +++   +EFD
Sbjct: 62   VDNSLQLDCFRDNFKVEVI----------------------------QLTKDD---MEFD 90

Query: 621  MIGIDASLANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIADPRLFEY 800
            MIGIDA++ANAFRRILI+ELPTMAIEKVLIANNTS+IQDEVLAHRLGLIPI ADPRLFEY
Sbjct: 91   MIGIDAAIANAFRRILISELPTMAIEKVLIANNTSLIQDEVLAHRLGLIPINADPRLFEY 150

Query: 801  MSENDVPNEKNTIVFKLHARCERGSSRITVKSDELKWLPGGSEFLLATENSASDTSGKQK 980
            +S ND PNEKNTIVFKLHA C+RG  R TV S+ELKWLPGGS+ L  +E + S    K  
Sbjct: 151  LSANDTPNEKNTIVFKLHASCKRGEPRRTVYSEELKWLPGGSQLLKESEKADS----KPS 206

Query: 981  TYTSFNRSQDSLPEISNNPITVYPD-ITIARLGPGQEIELEAHAVKGVGKTHAKWSPVAT 1157
            TYTSF   QD +P+    P++   D I +A+LGPGQEIELEAHAVKG+GKTHAKWSPVAT
Sbjct: 207  TYTSFTDKQDFIPK----PVSPSEDKIIVAKLGPGQEIELEAHAVKGLGKTHAKWSPVAT 262

Query: 1158 AWYRMLPEVVLLQEVKGKKAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRKCTLCRECVR 1337
            AWYRMLPEVVLL++++ + AEEL KKCP+ VFD+EDIGN  +RA V  PR CTLCREC+R
Sbjct: 263  AWYRMLPEVVLLEDIEDEIAEELTKKCPVNVFDIEDIGNGKKRATVARPRACTLCRECIR 322

Query: 1338 GNGWEEIVALRRVKDHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITELS 1493
            G  W++ V+LRRVKDHFIF+IESTGALPPEVLFTEAVK LEDKCERVITELS
Sbjct: 323  GGEWDKRVSLRRVKDHFIFTIESTGALPPEVLFTEAVKVLEDKCERVITELS 374


>ref|XP_002300385.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847643|gb|EEE85190.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 390

 Score =  509 bits (1310), Expect = e-141
 Identities = 262/413 (63%), Positives = 302/413 (73%), Gaps = 1/413 (0%)
 Frame = +3

Query: 258  ASSEDGTQTATPKIPVWELPDVPTGELPPHLDLQRTRVFCNKDAPTQTQKFQYSGAYAAM 437
            +S E+  Q        W L DV  G+LPPH+  Q TRV+C  DAPT T+  QYSG+YA+M
Sbjct: 13   SSEEEEQQQKEEGFSYWNLKDVERGQLPPHIRKQGTRVYCKPDAPTNTETLQYSGSYASM 72

Query: 438  GVDNSLRLDEFRKDFRVEFVXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEEEKYTLEF 617
            GVDNSLRLD FR++FR++ +                                 +K  +EF
Sbjct: 73   GVDNSLRLDSFRENFRIKVIAL-------------------------------DKDKMEF 101

Query: 618  DMIGIDASLANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIADPRLFE 797
            DMIGIDA++ANAFRRILI+E+PTMAIEKV IANNTSVIQDEVLAHRLGLIPI  DPRLFE
Sbjct: 102  DMIGIDAAVANAFRRILISEVPTMAIEKVFIANNTSVIQDEVLAHRLGLIPIKVDPRLFE 161

Query: 798  YMSENDVPNEKNTIVFKLHARCERGSSRITVKSDELKWLPGGSEFLLATENSASDTSGKQ 977
            Y+S ND PNEKNTIV KLHARC RG  R +V S ELKWLP GSEF   +E   S    K 
Sbjct: 162  YLSANDTPNEKNTIVLKLHARCNRGQPRCSVYSQELKWLPNGSEFAKESEKPDS----KP 217

Query: 978  KTYTSFNRSQDSLPEISNNPITVYPDITIARLGPGQEIELEAHAVKGVGKTHAKWSPVAT 1157
             TYTSF+  QDSLPE + NPI+   DI +A+LGPGQEIELEAHAVKG+GKTHAKWSPV T
Sbjct: 218  STYTSFSCGQDSLPEFAGNPISTVEDIILAKLGPGQEIELEAHAVKGMGKTHAKWSPVGT 277

Query: 1158 AWYRMLPEVVLLQEVKGKKAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRKCTLCRECVR 1337
            AWYRM PEVVLL+ +KG+ AEEL++KCP GVFD+ED GN  ++AIV   R CTLCREC+R
Sbjct: 278  AWYRMFPEVVLLENIKGEDAEELIRKCPSGVFDIEDTGNAKKKAIVADSRACTLCRECIR 337

Query: 1338 GN-GWEEIVALRRVKDHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITELS 1493
            G+  WE+ VAL RVKDHFIF+IESTGALPPEVLFTEAVK LE KCERVITELS
Sbjct: 338  GDEEWEKRVALHRVKDHFIFTIESTGALPPEVLFTEAVKILEAKCERVITELS 390


>gb|EPS59249.1| hypothetical protein M569_15560, partial [Genlisea aurea]
          Length = 364

 Score =  508 bits (1309), Expect = e-141
 Identities = 257/394 (65%), Positives = 297/394 (75%), Gaps = 1/394 (0%)
 Frame = +3

Query: 303  VWELPDVPTGELPPHLDLQRTRVFCNKDAPTQTQKFQYSGAYAAMGVDNSLRLDEFRKDF 482
            +W+LPDVP GELPPHL LQRTRV C  +APT T+  QYSGAYA MGVDNSL  D FR++F
Sbjct: 1    LWDLPDVPGGELPPHLQLQRTRVLCTSEAPTYTENIQYSGAYALMGVDNSLPFDSFRENF 60

Query: 483  RVEFVXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEEEKYTLEFDMIGIDASLANAFRR 662
            RVE V                                 +++ +EFD+IGIDA++ANAFRR
Sbjct: 61   RVEIVSM-------------------------------DEHDIEFDLIGIDAAIANAFRR 89

Query: 663  ILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIADPRLFEYMSENDVPNEKNTIV 842
            ILIAELPTMAIEKVLIANNTSVI DEVL+HRLGLIP+  DPR F +MSE+D PNEKNT+V
Sbjct: 90   ILIAELPTMAIEKVLIANNTSVIPDEVLSHRLGLIPLKVDPRPFSFMSEHDEPNEKNTVV 149

Query: 843  FKLHARCERGSSRITVKSDELKWLPGGSEFLLATENSASDTSGKQKTYTSFNRSQDSLPE 1022
            FKLH  CER  SR TVK+DELKWLP GSE  L TE    +++ K +TYTSFN SQDS+PE
Sbjct: 150  FKLHVSCERKGSRKTVKTDELKWLPNGSELRLETERPNINSTSKIQTYTSFNCSQDSMPE 209

Query: 1023 ISNNPITVYPD-ITIARLGPGQEIELEAHAVKGVGKTHAKWSPVATAWYRMLPEVVLLQE 1199
             S + +    D ITIARLGPGQEIELEAHAVKG+GKTHAKWSPVATAWYR+LPE+ LL E
Sbjct: 210  FSGSTLRPTSDEITIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRLLPEIALLDE 269

Query: 1200 VKGKKAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRKCTLCRECVRGNGWEEIVALRRVK 1379
            +K KKA+ELVKKCP  VFD+ED G D  RA V  PR C+LCREC+R   WE++V++RRVK
Sbjct: 270  IKNKKAKELVKKCPQKVFDIEDAGGDGIRATVARPRNCSLCRECIRDEEWEKLVSVRRVK 329

Query: 1380 DHFIFSIESTGALPPEVLFTEAVKNLEDKCERVI 1481
            DHFIF IESTGALPPEVLFTEAVK LE+KCE  +
Sbjct: 330  DHFIFKIESTGALPPEVLFTEAVKILEEKCENAM 363


>gb|EXB51013.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Morus
            notabilis]
          Length = 411

 Score =  488 bits (1256), Expect = e-135
 Identities = 266/433 (61%), Positives = 314/433 (72%), Gaps = 7/433 (1%)
 Frame = +3

Query: 216  SSSTVPLHSPMTSPASSEDGTQTATPKIP-----VWELPDVPTGELPPHLDLQRTRVFCN 380
            S ST+   +   +   +E  + +  PK       + +L DVP G+LPPHL+ QRT V C 
Sbjct: 12   SESTLETETETETETGTESESSSVDPKGGGGLRWLEKLSDVPMGKLPPHLEFQRTHVECK 71

Query: 381  KDAPTQTQKFQYSGAYAAMGVDNSLRLDEFRKDFRVEFVXXXXXXXXXXXXXXXXXXXXX 560
             DAP  T   QYSGAYA++GVDNS+R+D F  +FRVE +                     
Sbjct: 72   ADAPLHTDTIQYSGAYASLGVDNSVRMDSFCDNFRVEVM--------------------- 110

Query: 561  XXXXXYNQLEEEEKYTLEFDMIGIDASLANAFRRILIAELPTMAIEKVLIANNTSVIQDE 740
                   +L E++   +EFDMIGID +LANAFRRILI+E+PTMAIE+VLIANNTSV+QDE
Sbjct: 111  -------RLTEDD---MEFDMIGIDPALANAFRRILISEVPTMAIERVLIANNTSVVQDE 160

Query: 741  VLAHRLGLIPIIADPRLFEYMSENDVPNEKNTIVFKLHARCERGSSRITVKSDELKWLPG 920
            VLAHRLGLIPI  DPRLFE+   N+ PNEKNTIVFKLH R  + +   +VKS+EL W P 
Sbjct: 161  VLAHRLGLIPINVDPRLFEFAG-NNTPNEKNTIVFKLHVR-RKPNEPSSVKSNELIWSPK 218

Query: 921  GSEFLLATENSAS-DTSGKQKTYTSFNRSQDSLPEISNNPITVYPDITIARLGPGQEIEL 1097
            GSEFLLA+E+S S DTS K +TYTSF   QDSLPE SNN I V  +I IA+LGPGQEIEL
Sbjct: 219  GSEFLLASEDSKSADTSSKPRTYTSFTCRQDSLPEFSNNAIKVMENILIAKLGPGQEIEL 278

Query: 1098 EAHAVKGVGKTHAKWSPVATAWYRMLPEVVLLQEVKGKKAEELVKKCPLGVFDLEDIGND 1277
            EAHAVKG+GKTHAKWSPVATAWYRMLPEVVLLQEV+ + AEEL  KCP+GVFD+EDIG  
Sbjct: 279  EAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLQEVEDEAAEELKAKCPVGVFDIEDIGKG 338

Query: 1278 MQRAIVKHPRKCTLCRECVR-GNGWEEIVALRRVKDHFIFSIESTGALPPEVLFTEAVKN 1454
             +RA V  PR CTLCREC+R G  WE+ V+LRR K+HFIF+IESTGALPPEVLFTEAVK 
Sbjct: 339  RKRATVARPRGCTLCRECIRGGQQWEDRVSLRRRKNHFIFNIESTGALPPEVLFTEAVKI 398

Query: 1455 LEDKCERVITELS 1493
            LEDKCERVI +LS
Sbjct: 399  LEDKCERVIADLS 411


>ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
            [Cucumis sativus] gi|449522768|ref|XP_004168398.1|
            PREDICTED: DNA-directed RNA polymerases I and III subunit
            RPAC1-like [Cucumis sativus]
          Length = 391

 Score =  483 bits (1244), Expect = e-134
 Identities = 256/399 (64%), Positives = 301/399 (75%), Gaps = 2/399 (0%)
 Frame = +3

Query: 303  VWELPDVPTGELPPHLDLQRTRVFCNKDAPTQTQKFQYSGAYAAMGVDNSLRLDEFRKDF 482
            +  LPDVP  +LPPH++LQRTRV C  DAP  T   QYSGA+A+MG DNSLRLD FR +F
Sbjct: 29   IMNLPDVPM-KLPPHVELQRTRVECKADAPIHTDTIQYSGAFASMGFDNSLRLDNFRNNF 87

Query: 483  RVEFVXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEEEKYTLEFDMIGIDASLANAFRR 662
            ++E +                             L+E++   +EFDMIGID +LANAFRR
Sbjct: 88   KIEVI----------------------------DLKEDD---IEFDMIGIDPALANAFRR 116

Query: 663  ILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIADPRLFEYMSENDVPNEKNTIV 842
            ILI+E+PTMAIEKVL ANNTS++QDEVLAHRLGL+PI  DPRLF+Y S+ D PNE NTIV
Sbjct: 117  ILISEVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKY-SDKDAPNENNTIV 175

Query: 843  FKLHARCERGSSRITVKSDELKWLPGGSEFLLATENSASDTSGKQKTYTSFNRSQDSLP- 1019
            F+LHA CERG  R+TV S  L WLP GSEF L ++ S S++  K KTYTSF+ SQ++L  
Sbjct: 176  FRLHACCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNS--KPKTYTSFSCSQNTLSK 233

Query: 1020 EISNNPITVYP-DITIARLGPGQEIELEAHAVKGVGKTHAKWSPVATAWYRMLPEVVLLQ 1196
            E SNNPI     DI +ARLGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPEVVL++
Sbjct: 234  EFSNNPIGPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLME 293

Query: 1197 EVKGKKAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRKCTLCRECVRGNGWEEIVALRRV 1376
            E++ + AEEL KKCP+ VFD+EDI    +RA V  PR CTLCREC+RG+ WE+ VALRRV
Sbjct: 294  EIEDELAEELEKKCPVNVFDIEDIAG-KKRATVARPRDCTLCRECIRGDAWEKRVALRRV 352

Query: 1377 KDHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITELS 1493
            KDHFIF IESTGALPPEVLFTEAVK LEDKCER+I ELS
Sbjct: 353  KDHFIFKIESTGALPPEVLFTEAVKILEDKCERLIAELS 391


>ref|XP_006414263.1| hypothetical protein EUTSA_v10025407mg [Eutrema salsugineum]
            gi|557115433|gb|ESQ55716.1| hypothetical protein
            EUTSA_v10025407mg [Eutrema salsugineum]
          Length = 394

 Score =  480 bits (1235), Expect = e-133
 Identities = 253/412 (61%), Positives = 297/412 (72%), Gaps = 19/412 (4%)
 Frame = +3

Query: 315  PDVPTGELPPHLDLQRTRVFCNKDAPTQTQKFQYSGAYAAMGVDNSLRLDEFRKDFRVEF 494
            PDVP   LPPHL+LQRTRV C  DAP  T   QYSGAY  +GVDNS++L+ F ++FRV+ 
Sbjct: 19   PDVPA-RLPPHLELQRTRVLCKNDAPIHTSSVQYSGAYKFVGVDNSVKLESFSENFRVDV 77

Query: 495  VXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEEEKYTLEFDMIGIDASLANAFRRILIA 674
            +                                E+   LEFDMIGIDA++ANAFRRIL+A
Sbjct: 78   I-------------------------------SEDGMELEFDMIGIDAAIANAFRRILLA 106

Query: 675  ELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIADPRLFEYMSENDVPNEKNTIVFKLH 854
            ELPTMAIEKV +ANNTSV+QDEVLA R+GLIPI ADPRLFEY+SEND PNEKNTIVFKLH
Sbjct: 107  ELPTMAIEKVFVANNTSVVQDEVLAQRMGLIPIAADPRLFEYLSENDQPNEKNTIVFKLH 166

Query: 855  ARCERGSSRITVKSDELKWLPGGSEFLLATENSASDTSGKQKTYTSFNRSQDSLPEISNN 1034
            A+CE+G  R+ V + EL WLP GSE +  +  S S    K +TYTSF+RSQDS PE +NN
Sbjct: 167  AKCEKGEPRLKVLTKELIWLPNGSELIKESGGSTS----KPRTYTSFSRSQDSFPEFANN 222

Query: 1035 PIT-VYPDITIARLGPGQEIELEAHAVKGVGKTHAKWSPVATAWYRMLPEVVLLQEVKGK 1211
            PIT  YPDI IA+LGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPEV+LL+E +G+
Sbjct: 223  PITPSYPDILIAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVILLKEFEGE 282

Query: 1212 KAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRKCTLCREC-------------VRGNG-- 1346
             AE+LVK C   VFD+ED+GN  ++A V  PR+CTLCREC             ++G    
Sbjct: 283  DAEKLVKACAEKVFDIEDMGNGRKKATVARPRQCTLCRECLSEEFGEPIVKPILKGEDKS 342

Query: 1347 ---WEEIVALRRVKDHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITELS 1493
               W + VALRRVK+HFIF IESTG+LPP+VLFTEAVK LEDKCERVI  LS
Sbjct: 343  KREWVDNVALRRVKNHFIFKIESTGSLPPDVLFTEAVKILEDKCERVIAVLS 394


>ref|XP_003532185.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
            [Glycine max]
          Length = 393

 Score =  480 bits (1235), Expect = e-133
 Identities = 263/427 (61%), Positives = 308/427 (72%), Gaps = 7/427 (1%)
 Frame = +3

Query: 234  LHSPMTSPASSEDGTQTATPKIP----VWELPDVPTGELPPHLDLQRTRVFCNKDAPTQT 401
            + S  +S +SSED + +          +  L +VP+ +LPPHL+L +TRV CN DAP  T
Sbjct: 1    MSSSSSSSSSSEDESMSEQSNELGLDFILSLDNVPS-KLPPHLELFKTRVLCNNDAPVHT 59

Query: 402  QKFQYSGAYAAMGVDNSLRLDEFRKDFRVEFVXXXXXXXXXXXXXXXXXXXXXXXXXXYN 581
               QYSGAYA MGVDNS+RLD F ++F+VE                              
Sbjct: 60   DTVQYSGAYAIMGVDNSVRLDSFCENFKVEV----------------------------K 91

Query: 582  QLEEEEKYTLEFDMIGIDASLANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLG 761
            +L + +   +EFDMIGID ++ANAFRRILIAE+PTMAIE+V IANNTSV+QDEVL+HRLG
Sbjct: 92   RLTDSD---IEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLSHRLG 148

Query: 762  LIPIIADPRLFEYMSE-NDVPNEKNTIVFKLHARCERGSSRITVKSDELKWLPGGSEFLL 938
            LIPI ADPRLFEY     D  NEKNTIVFKLH RC+ G  RITVKSD+LKWLP GSE  L
Sbjct: 149  LIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGSE--L 206

Query: 939  ATENSASDTSGKQKTYTSFNRSQDSLPEISNNPITV-YPDITIARLGPGQEIELEAHAVK 1115
              E+   +   K KT+TSF  SQDSLPE SNN I + Y DI +A+LGPGQEIELEAHAVK
Sbjct: 207  PCEDVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPGQEIELEAHAVK 266

Query: 1116 GVGKTHAKWSPVATAWYRMLPEVVLLQEVKGKKAEELVKKCPLGVFDLEDIGNDMQRAIV 1295
            G GKTHAKWSPVAT WYRMLPEVVLL++V+ + AEEL  KCP+ VFD+EDIG   +RA V
Sbjct: 267  GTGKTHAKWSPVATTWYRMLPEVVLLKDVEDELAEELKNKCPVNVFDIEDIGKGKRRAKV 326

Query: 1296 KHPRKCTLCRECVR-GNGWEEIVALRRVKDHFIFSIESTGALPPEVLFTEAVKNLEDKCE 1472
              PR CTLCREC+R G  WE+ V+LRRVK+HFIF+IESTGALPPEVLFTEAVK LEDKCE
Sbjct: 327  ARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEVLFTEAVKILEDKCE 386

Query: 1473 RVITELS 1493
            RVITELS
Sbjct: 387  RVITELS 393


>ref|NP_001242652.1| uncharacterized protein LOC100786622 [Glycine max]
            gi|255637183|gb|ACU18922.1| unknown [Glycine max]
          Length = 388

 Score =  479 bits (1234), Expect = e-132
 Identities = 260/422 (61%), Positives = 307/422 (72%), Gaps = 6/422 (1%)
 Frame = +3

Query: 246  MTSPASSEDGTQTATPKIP---VWELPDVPTGELPPHLDLQRTRVFCNKDAPTQTQKFQY 416
            M+S +S ++     + ++    +  L +VP+ +LPPHL+L +TRV CN DAP  T   QY
Sbjct: 1    MSSSSSEDESMSEQSNELGLDFILSLDNVPS-KLPPHLELFKTRVLCNNDAPVHTDTVQY 59

Query: 417  SGAYAAMGVDNSLRLDEFRKDFRVEFVXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEE 596
            SGAYA +GVDNS+RLD F ++F+VE                              +L + 
Sbjct: 60   SGAYAILGVDNSVRLDSFCENFKVEV----------------------------KRLTDS 91

Query: 597  EKYTLEFDMIGIDASLANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPII 776
            +   +EFDMIGID ++ANAFRRILIAE+PTMAIE+V IANNTSV+QDEVL+HRLGLIPI 
Sbjct: 92   D---IEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLSHRLGLIPIR 148

Query: 777  ADPRLFEYMSE-NDVPNEKNTIVFKLHARCERGSSRITVKSDELKWLPGGSEFLLATENS 953
            ADPRLFEY     D  NEKNTIVFKLH RC+ G  RITVKSD+LKWLP GSE  L  E  
Sbjct: 149  ADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGSE--LPCEGV 206

Query: 954  ASDTSGKQKTYTSFNRSQDSLPEISNNPITV-YPDITIARLGPGQEIELEAHAVKGVGKT 1130
              +   K KT+TSF  SQDSLPE SNN I + Y DI +A+LGPGQEIELEAHAVKG+GKT
Sbjct: 207  KPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPGQEIELEAHAVKGIGKT 266

Query: 1131 HAKWSPVATAWYRMLPEVVLLQEVKGKKAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRK 1310
            HAKWSPVATAWYRMLPEVVLL+ V+ + AEEL  KCP+ VFD+EDIG   +RA V  PR 
Sbjct: 267  HAKWSPVATAWYRMLPEVVLLEAVEDELAEELKNKCPVNVFDIEDIGKGKRRAKVARPRD 326

Query: 1311 CTLCRECVR-GNGWEEIVALRRVKDHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITE 1487
            CTLCREC+R G  WE+ V+LRRVK+HFIF+IESTGALPPEVLFTEAVK LEDKCERVITE
Sbjct: 327  CTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEVLFTEAVKILEDKCERVITE 386

Query: 1488 LS 1493
            LS
Sbjct: 387  LS 388


>ref|NP_176261.1| RNA polymerase I subunit 43 [Arabidopsis thaliana]
            gi|14423464|gb|AAK62414.1|AF386969_1 RNA polymerase
            subunit (isoform B) [Arabidopsis thaliana]
            gi|514324|gb|AAB00529.1| RNA polymerase subunit
            [Arabidopsis thaliana] gi|2462755|gb|AAB71974.1| RNA
            polymerase subunit (isoform B) [Arabidopsis thaliana]
            gi|24899667|gb|AAN65048.1| RNA polymerase subunit
            (isoform B) [Arabidopsis thaliana]
            gi|332195585|gb|AEE33706.1| RNA polymerase I subunit 43
            [Arabidopsis thaliana] gi|1586550|prf||2204246B RNA
            polymerase
          Length = 385

 Score =  478 bits (1231), Expect = e-132
 Identities = 254/399 (63%), Positives = 296/399 (74%), Gaps = 2/399 (0%)
 Frame = +3

Query: 303  VWELPDVPTGELPPHLDLQRTRVFCNKDAPTQTQKFQYSGAYAAMGVDNSLRLDEFRKDF 482
            +++LPDVPTG LPPHL+LQRTRV C KD+        +SGAY++MGVDNS+RL+ F +DF
Sbjct: 23   IFDLPDVPTG-LPPHLELQRTRVVCKKDSNIHPTAITFSGAYSSMGVDNSVRLENFSEDF 81

Query: 483  RVEFVXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEEEKYTLEFDMIGIDASLANAFRR 662
            +V+ +                             L E +   + FDMIG+ A +ANAFRR
Sbjct: 82   KVDVI----------------------------SLTETD---MVFDMIGVHAGIANAFRR 110

Query: 663  ILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIADPRLFEYMSENDVPNEKNTIV 842
            IL+AELP+MAIEKV +ANNTSVIQDEVLAHRLGLIPI ADPRLFEY+SEND PNEKNTIV
Sbjct: 111  ILLAELPSMAIEKVYVANNTSVIQDEVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIV 170

Query: 843  FKLHARCERGSSRITVKSDELKWLPGGSEFLLATENSASDTSGKQKTYTSFNRSQDSLPE 1022
            FKLH +C +G  R  V + ELKWLP GSE  L  E+  S T+   KTYTSFN SQDS PE
Sbjct: 171  FKLHVKCLKGDPRRKVLTSELKWLPNGSE--LIKESGGSTTT--PKTYTSFNHSQDSFPE 226

Query: 1023 ISNNPI-TVYPDITIARLGPGQEIELEAHAVKGVGKTHAKWSPVATAWYRMLPEVVLLQE 1199
             + NPI     DI IA+LGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPEVVLL+E
Sbjct: 227  FAENPIRPTLKDILIAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLKE 286

Query: 1200 VKGKKAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRKCTLCRECVR-GNGWEEIVALRRV 1376
             +GK AEELVK CP  VFD+ED+G   +RA V  PR C+LCREC+R G  WE+ V LRRV
Sbjct: 287  FEGKHAEELVKVCPKKVFDIEDMGQGRKRATVARPRDCSLCRECIRDGVEWEDQVDLRRV 346

Query: 1377 KDHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITELS 1493
            K+HFIF+IESTG+ PPEVLF EAVK LEDKCERVI+ELS
Sbjct: 347  KNHFIFTIESTGSQPPEVLFNEAVKILEDKCERVISELS 385


>gb|EOY11972.1| RNA polymerase I subunit 43 isoform 4 [Theobroma cacao]
          Length = 323

 Score =  477 bits (1227), Expect = e-132
 Identities = 248/354 (70%), Positives = 277/354 (78%), Gaps = 1/354 (0%)
 Frame = +3

Query: 435  MGVDNSLRLDEFRKDFRVEFVXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEEEKYTLE 614
            MGVDNSLRLD F  +FRVE V                            +L EE+   +E
Sbjct: 1    MGVDNSLRLDHFCHNFRVEVV----------------------------RLTEED---ME 29

Query: 615  FDMIGIDASLANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIADPRLF 794
            FDMIGIDA++ANAFRRILIAELPTMAIEKVLIANNTSV+QDEVLAHRLGLIPI  DPRLF
Sbjct: 30   FDMIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVVQDEVLAHRLGLIPISVDPRLF 89

Query: 795  EYMSENDVPNEKNTIVFKLHARCERGSSRITVKSDELKWLPGGSEFLLATENSASDTSGK 974
            EYMSEND PNEKNTIVFKLH  C+RGS RITVKSDELKWLP GSE +  +   ASD++ K
Sbjct: 90   EYMSENDQPNEKNTIVFKLHVHCKRGSPRITVKSDELKWLPNGSELIKESRKVASDSASK 149

Query: 975  QKTYTSFNRSQDSLPEISNNPITV-YPDITIARLGPGQEIELEAHAVKGVGKTHAKWSPV 1151
             +TYTSF+ SQD+LPE +NNPI   YPDI I++LGPGQEIELEAHAVKG+GKTHAKWSPV
Sbjct: 150  PETYTSFSCSQDTLPEFANNPIAPKYPDIIISKLGPGQEIELEAHAVKGMGKTHAKWSPV 209

Query: 1152 ATAWYRMLPEVVLLQEVKGKKAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRKCTLCREC 1331
            ATAWYRMLPEVVLL+EV+   AE L  KCP+ VFD+ED+G   +RA V  PR CTLCREC
Sbjct: 210  ATAWYRMLPEVVLLEEVEDDLAEGLKSKCPVNVFDIEDLGKGKKRATVARPRACTLCREC 269

Query: 1332 VRGNGWEEIVALRRVKDHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITELS 1493
            +R   WE+ VA+ RVKDHFIF+IESTGALPPEVLFTEAVK LEDKCERVITELS
Sbjct: 270  IRDEEWEKRVAIHRVKDHFIFTIESTGALPPEVLFTEAVKILEDKCERVITELS 323


>ref|XP_004488284.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
            [Cicer arietinum]
          Length = 388

 Score =  476 bits (1226), Expect = e-131
 Identities = 252/400 (63%), Positives = 298/400 (74%), Gaps = 3/400 (0%)
 Frame = +3

Query: 303  VWELPDVPTGELPPHLDLQRTRVFCNKDAPTQTQKFQYSGAYAAMGVDNSLRLDEFRKDF 482
            +  L DVP+ +L PHL+L +TRV C+ DAP  T    YSGAYAA+GVDNS+RLD F ++F
Sbjct: 23   IMNLEDVPS-KLSPHLELIKTRVVCSIDAPQHTDTINYSGAYAALGVDNSVRLDSFCRNF 81

Query: 483  RVEFVXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEEEKYTLEFDMIGIDASLANAFRR 662
            +VE                              +L +++   +EFDMIGID SLANAFRR
Sbjct: 82   KVEV----------------------------KKLTDDD---IEFDMIGIDPSLANAFRR 110

Query: 663  ILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIADPRLFEYMSE-NDVPNEKNTI 839
            ILIAE+PTMAIE+V IANNTS+IQDEVL+HRLGLIPI ADP LFEY        NEKNTI
Sbjct: 111  ILIAEVPTMAIERVYIANNTSIIQDEVLSHRLGLIPINADPTLFEYPDNAGGENNEKNTI 170

Query: 840  VFKLHARCERGSSRITVKSDELKWLPGGSEFLLATENSASDTSGKQKTYTSFNRSQDSLP 1019
            VFKLH RCE+G  RI VKSDELKWLP GS+  L  +++  +   K KT+TSF+ SQDSLP
Sbjct: 171  VFKLHVRCEKGQPRIIVKSDELKWLPNGSD--LIADDTKPNAGSKPKTFTSFSCSQDSLP 228

Query: 1020 EISNNPI-TVYPDITIARLGPGQEIELEAHAVKGVGKTHAKWSPVATAWYRMLPEVVLLQ 1196
            E S  P+   YPDI +A+LGPGQEIELE HAVKGVGKTHAKWSPVATAWYRMLPEVVL++
Sbjct: 229  EFSKRPLGPTYPDIILAKLGPGQEIELEVHAVKGVGKTHAKWSPVATAWYRMLPEVVLME 288

Query: 1197 EVKGKKAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRKCTLCRECVR-GNGWEEIVALRR 1373
            +VK + A+ELV KCP+ VFD+EDIG   +RA V  PR CTLCREC+R G  WE+ V+LRR
Sbjct: 289  DVKDELADELVTKCPVNVFDIEDIGKGRKRATVVKPRACTLCRECIRGGKEWEDRVSLRR 348

Query: 1374 VKDHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITELS 1493
            VKDHFIF+IESTGA+PP+VLFT+AVK LEDKCERVITELS
Sbjct: 349  VKDHFIFTIESTGAIPPDVLFTQAVKILEDKCERVITELS 388


>ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
            gi|297333970|gb|EFH64388.1| ATRPAC43 [Arabidopsis lyrata
            subsp. lyrata]
          Length = 385

 Score =  476 bits (1226), Expect = e-131
 Identities = 252/399 (63%), Positives = 293/399 (73%), Gaps = 2/399 (0%)
 Frame = +3

Query: 303  VWELPDVPTGELPPHLDLQRTRVFCNKDAPTQTQKFQYSGAYAAMGVDNSLRLDEFRKDF 482
            +++LPDVPTG LPPHL+LQRTR  C  DAP       YSGAYA+MGVDNS+RL+ F +DF
Sbjct: 23   IFDLPDVPTG-LPPHLELQRTRAVCKNDAPIHPTSVLYSGAYASMGVDNSVRLENFSEDF 81

Query: 483  RVEFVXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEEEKYTLEFDMIGIDASLANAFRR 662
            +V+ +                                 E Y + FDMIG+ A +ANAFRR
Sbjct: 82   KVDVISLT------------------------------ETYMV-FDMIGVPAGIANAFRR 110

Query: 663  ILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIADPRLFEYMSENDVPNEKNTIV 842
            IL+AELP+MAIEKV +ANNTSVIQDEVLAHRLGLIPI ADPRLFEY+SEND PNEKNTIV
Sbjct: 111  ILLAELPSMAIEKVFVANNTSVIQDEVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIV 170

Query: 843  FKLHARCERGSSRITVKSDELKWLPGGSEFLLATENSASDTSGKQKTYTSFNRSQDSLPE 1022
            FKLH +C +G  R  V + ELKWLP GSE  L  E+    T  K KTYTSF+ SQDS P 
Sbjct: 171  FKLHVKCPKGDPRRKVLTSELKWLPNGSE--LVKESGGLTT--KPKTYTSFSHSQDSFPG 226

Query: 1023 ISNNPIT-VYPDITIARLGPGQEIELEAHAVKGVGKTHAKWSPVATAWYRMLPEVVLLQE 1199
             + NPIT  + DI IA+LGPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPEV+LL+E
Sbjct: 227  FAKNPITPSFQDILIAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVILLKE 286

Query: 1200 VKGKKAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRKCTLCRECVR-GNGWEEIVALRRV 1376
             +GK AEELVK CP  VFD+ED+G   +RA V  PR C+LCREC+R G  W + V LRRV
Sbjct: 287  FEGKHAEELVKVCPKKVFDIEDMGQGRKRATVARPRDCSLCRECIREGVEWAKQVDLRRV 346

Query: 1377 KDHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITELS 1493
            K+HFIF+IESTG+ PP+VLF EAVK LEDKCERVI+ELS
Sbjct: 347  KNHFIFTIESTGSQPPDVLFNEAVKILEDKCERVISELS 385


>ref|XP_004498147.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
            [Cicer arietinum]
          Length = 388

 Score =  473 bits (1216), Expect = e-130
 Identities = 252/400 (63%), Positives = 296/400 (74%), Gaps = 3/400 (0%)
 Frame = +3

Query: 303  VWELPDVPTGELPPHLDLQRTRVFCNKDAPTQTQKFQYSGAYAAMGVDNSLRLDEFRKDF 482
            +  L DVP+ +L PHL+L +TRV C+ DAP  T    YSGAYAA+GVDNS+RLD F ++F
Sbjct: 23   IMNLEDVPS-KLSPHLELIKTRVVCSIDAPQHTDTINYSGAYAALGVDNSVRLDSFCQNF 81

Query: 483  RVEFVXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEEEKYTLEFDMIGIDASLANAFRR 662
            +VE                              +L +++   +EFDMIGID SLANAFRR
Sbjct: 82   KVEV----------------------------KKLTDDD---IEFDMIGIDPSLANAFRR 110

Query: 663  ILIAELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIADPRLFEYMSE-NDVPNEKNTI 839
            ILIAE+PTMAIE+V IANNTS+IQDEVL+HRLGLIPI ADP LFEY        NEKNTI
Sbjct: 111  ILIAEVPTMAIERVYIANNTSIIQDEVLSHRLGLIPINADPTLFEYPDNAGGENNEKNTI 170

Query: 840  VFKLHARCERGSSRITVKSDELKWLPGGSEFLLATENSASDTSGKQKTYTSFNRSQDSLP 1019
            VFKLH RCE+G  RITVKSDELKWLP GS+  L  +++  +   K KT+TSF+ SQDSLP
Sbjct: 171  VFKLHVRCEKGQPRITVKSDELKWLPNGSD--LIADDTKPNAGSKPKTFTSFSCSQDSLP 228

Query: 1020 EISNNPI-TVYPDITIARLGPGQEIELEAHAVKGVGKTHAKWSPVATAWYRMLPEVVLLQ 1196
            E S  P+    PDI +A+LGPGQEIELE HAVKGVGKTHAKWSPVATAWYRMLPEVVL +
Sbjct: 229  EFSKKPLGPTNPDIILAKLGPGQEIELEVHAVKGVGKTHAKWSPVATAWYRMLPEVVLTE 288

Query: 1197 EVKGKKAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRKCTLCRECVR-GNGWEEIVALRR 1373
            +V  + A+ELV KCP+ VFD+EDIG   +RA V  PR CTLCREC+R G  WE+ V+LRR
Sbjct: 289  DVTDELADELVTKCPVNVFDIEDIGKGRKRATVVKPRACTLCRECIRGGKEWEDRVSLRR 348

Query: 1374 VKDHFIFSIESTGALPPEVLFTEAVKNLEDKCERVITELS 1493
            VKDHFIF+IESTGA+PPEVLFT+AVK LEDKCERVITELS
Sbjct: 349  VKDHFIFTIESTGAIPPEVLFTQAVKILEDKCERVITELS 388


>ref|XP_002453469.1| hypothetical protein SORBIDRAFT_04g006420 [Sorghum bicolor]
            gi|241933300|gb|EES06445.1| hypothetical protein
            SORBIDRAFT_04g006420 [Sorghum bicolor]
          Length = 370

 Score =  473 bits (1216), Expect = e-130
 Identities = 245/394 (62%), Positives = 300/394 (76%), Gaps = 1/394 (0%)
 Frame = +3

Query: 315  PDVPTGELPPHLDLQRTRVFCNKDAPTQTQKFQYSGAYAAMGVDNSLRLDEFRKDFRVEF 494
            P+    +LP +L++QRTRV CN DAP  TQ +QYSG +AAMGVDNS+ +++F K+F++E 
Sbjct: 15   PNQQENKLPDYLEVQRTRVVCNADAPIHTQGYQYSGTFAAMGVDNSVSVEKFCKNFKIEI 74

Query: 495  VXXXXXXXXXXXXXXXXXXXXXXXXXXYNQLEEEEKYTLEFDMIGIDASLANAFRRILIA 674
                                        N+L E++   +EFDMIGIDAS+ANAFRRILIA
Sbjct: 75   ----------------------------NRLTEDD---MEFDMIGIDASIANAFRRILIA 103

Query: 675  ELPTMAIEKVLIANNTSVIQDEVLAHRLGLIPIIADPRLFEYMSENDVPNEKNTIVFKLH 854
            E+PTMAIEK+ + +NTSVI DEVL+HRLGLIP+ ADPRLF+Y+SENDVPNE+NT+V+KLH
Sbjct: 104  EVPTMAIEKIFMVDNTSVIADEVLSHRLGLIPLRADPRLFDYISENDVPNERNTVVYKLH 163

Query: 855  ARCERGSSRITVKSDELKWLPGGSEFLLATENSASDTSGKQKTYTSFNRSQDSLPEISNN 1034
              C +GS RITVKS EL+WLP GS+  +A    + D   KQKT+TSF++SQ    EI   
Sbjct: 164  VSCPKGSQRITVKSSELEWLPEGSQLSMAAPAQSGD---KQKTFTSFSQSQ---KEILEE 217

Query: 1035 PITV-YPDITIARLGPGQEIELEAHAVKGVGKTHAKWSPVATAWYRMLPEVVLLQEVKGK 1211
            P+ V + DITIARLGPGQ IELEAHAVKGVGK HAKWSPVATAWYRMLPEVV+L++++G 
Sbjct: 218  PLGVKFKDITIARLGPGQAIELEAHAVKGVGKVHAKWSPVATAWYRMLPEVVILKDIEGD 277

Query: 1212 KAEELVKKCPLGVFDLEDIGNDMQRAIVKHPRKCTLCRECVRGNGWEEIVALRRVKDHFI 1391
             AEELVKKCP+ VFD+ED+GN  +RA+V  PR CTLCRECV G    + V LRRV+DHFI
Sbjct: 278  DAEELVKKCPVNVFDIEDLGNGGKRAVVAKPRACTLCRECVMGPNGNQ-VELRRVRDHFI 336

Query: 1392 FSIESTGALPPEVLFTEAVKNLEDKCERVITELS 1493
            F+IESTGALPPEVLFTEAVK LE+KCERVI+ELS
Sbjct: 337  FTIESTGALPPEVLFTEAVKILEEKCERVISELS 370