BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00016738
         (239 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    91   7e-18
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...    91   7e-18
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th...    89   2e-17
gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Th...    89   2e-17
ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutr...    85   8e-17
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...    89   6e-16
emb|CBI29879.3| unnamed protein product [Vitis vinifera]               88   1e-15
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...    88   1e-15
ref|XP_002308049.1| predicted protein [Populus trichocarpa]            87   2e-15
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...    79   3e-15
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...    80   4e-15
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps...    79   4e-15
gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlise...    81   2e-13
ref|XP_004365525.1| RNA polymerase I largest subunit [Capsaspora...    80   3e-13
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...    79   5e-13
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab...    71   7e-13
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana...    71   9e-13
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...    78   1e-12
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr...    78   1e-12
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...    78   1e-12

>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
           subunit RPA1-like [Cucumis sativus]
          Length = 1652

 Score = 91.3 bits (225), Expect(2) = 7e-18
 Identities = 45/75 (60%), Positives = 50/75 (66%), Gaps = 8/75 (10%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLYNHSP--------CKSCGQRLFHCLGHC 49
           F  NEEVR+ SVVK+T P LLDGM RP  GGLY+ +         CKSCGQR F+C GHC
Sbjct: 25  FMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKSCGQRPFYCPGHC 84

Query: 48  VHIDLALPAYNPLPF 4
            HIDL  P YNPL F
Sbjct: 85  GHIDLVSPVYNPLLF 99



 Score = 24.6 bits (52), Expect(2) = 7e-18
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 239 GASEAVEKVRFSFMT 195
           GASE+V+ V FSFMT
Sbjct: 13  GASESVKVVTFSFMT 27


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
           sativus]
          Length = 1650

 Score = 91.3 bits (225), Expect(2) = 7e-18
 Identities = 45/75 (60%), Positives = 50/75 (66%), Gaps = 8/75 (10%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLYNHSP--------CKSCGQRLFHCLGHC 49
           F  NEEVR+ SVVK+T P LLDGM RP  GGLY+ +         CKSCGQR F+C GHC
Sbjct: 19  FMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKSCGQRPFYCPGHC 78

Query: 48  VHIDLALPAYNPLPF 4
            HIDL  P YNPL F
Sbjct: 79  GHIDLVSPVYNPLLF 93



 Score = 24.6 bits (52), Expect(2) = 7e-18
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 239 GASEAVEKVRFSFMT 195
           GASE+V+ V FSFMT
Sbjct: 7   GASESVKVVTFSFMT 21


>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score = 89.0 bits (219), Expect(2) = 2e-17
 Identities = 43/75 (57%), Positives = 48/75 (64%), Gaps = 8/75 (10%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLYN--------HSPCKSCGQRLFHCLGHC 49
           F   EEVR+HS +K+TN  LLD MDRP PGGLY+         +PCKSCG    HC GHC
Sbjct: 19  FMTTEEVRKHSFLKVTNANLLDLMDRPMPGGLYDAVLGPLEDRTPCKSCGLLKLHCPGHC 78

Query: 48  VHIDLALPAYNPLPF 4
            HIDL  P YNPL F
Sbjct: 79  GHIDLVSPIYNPLLF 93



 Score = 25.4 bits (54), Expect(2) = 2e-17
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -1

Query: 239 GASEAVEKVRFSFMT 195
           GA+++VE VRF+FMT
Sbjct: 7   GATDSVEAVRFNFMT 21


>gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score = 89.0 bits (219), Expect(2) = 2e-17
 Identities = 43/75 (57%), Positives = 48/75 (64%), Gaps = 8/75 (10%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLYN--------HSPCKSCGQRLFHCLGHC 49
           F   EEVR+HS +K+TN  LLD MDRP PGGLY+         +PCKSCG    HC GHC
Sbjct: 19  FMTTEEVRKHSFLKVTNANLLDLMDRPMPGGLYDAVLGPLEDRTPCKSCGLLKLHCPGHC 78

Query: 48  VHIDLALPAYNPLPF 4
            HIDL  P YNPL F
Sbjct: 79  GHIDLVSPIYNPLLF 93



 Score = 25.4 bits (54), Expect(2) = 2e-17
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -1

Query: 239 GASEAVEKVRFSFMT 195
           GA+++VE VRF+FMT
Sbjct: 7   GATDSVEAVRFNFMT 21


>ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutrema salsugineum]
           gi|557103957|gb|ESQ44311.1| hypothetical protein
           EUTSA_v10005738mg [Eutrema salsugineum]
          Length = 1697

 Score = 84.7 bits (208), Expect(2) = 8e-17
 Identities = 39/75 (52%), Positives = 49/75 (65%), Gaps = 8/75 (10%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLY--------NHSPCKSCGQRLFHCLGHC 49
           F   E+VR+HSV+K+TNP LLD ++RP PGGLY        + + CKSCGQ    C GHC
Sbjct: 21  FMTEEDVRKHSVMKVTNPVLLDNVERPVPGGLYDPLMGPLDDRTSCKSCGQLSLVCPGHC 80

Query: 48  VHIDLALPAYNPLPF 4
            HI+L  P Y+PL F
Sbjct: 81  GHIELVYPIYHPLLF 95



 Score = 27.7 bits (60), Expect(2) = 8e-17
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -1

Query: 239 GASEAVEKVRFSFMT 195
           GAS+ VE VRFSFMT
Sbjct: 9   GASQVVESVRFSFMT 23


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
           communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
           polymerase I largest subunit, putative [Ricinus
           communis]
          Length = 1686

 Score = 89.0 bits (219), Expect = 6e-16
 Identities = 43/75 (57%), Positives = 51/75 (68%), Gaps = 8/75 (10%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLYN--------HSPCKSCGQRLFHCLGHC 49
           F  +EEVR+HS VKITNP LLD ++RP PGGLY+         + CK+CGQR  +C GHC
Sbjct: 22  FLTDEEVRKHSFVKITNPRLLDLVERPVPGGLYDPALGPLSERTICKTCGQRSTNCPGHC 81

Query: 48  VHIDLALPAYNPLPF 4
            HIDL  P YNPL F
Sbjct: 82  GHIDLVSPVYNPLLF 96


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 40/75 (53%), Positives = 52/75 (69%), Gaps = 8/75 (10%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLYN--------HSPCKSCGQRLFHCLGHC 49
           F+ +EEVR++S  KIT+P +LD + RP PGGLY+        ++PC+SCGQR F+C GHC
Sbjct: 19  FFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQSCGQRSFYCPGHC 78

Query: 48  VHIDLALPAYNPLPF 4
            HIDL    YNPL F
Sbjct: 79  GHIDLVSSVYNPLLF 93


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
           vinifera]
          Length = 1740

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 40/75 (53%), Positives = 52/75 (69%), Gaps = 8/75 (10%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLYN--------HSPCKSCGQRLFHCLGHC 49
           F+ +EEVR++S  KIT+P +LD + RP PGGLY+        ++PC+SCGQR F+C GHC
Sbjct: 68  FFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQSCGQRSFYCPGHC 127

Query: 48  VHIDLALPAYNPLPF 4
            HIDL    YNPL F
Sbjct: 128 GHIDLVSSVYNPLLF 142


>ref|XP_002308049.1| predicted protein [Populus trichocarpa]
          Length = 1168

 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 41/74 (55%), Positives = 50/74 (67%), Gaps = 7/74 (9%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLYNHS-------PCKSCGQRLFHCLGHCV 46
           F  +EEV +HS VKIT+  LLD +D+P PGGLY+ +       PCK+CGQR  +C GHC 
Sbjct: 18  FLTDEEVHKHSFVKITSARLLDTLDKPVPGGLYDPAMGPLGDEPCKTCGQRSTNCTGHCG 77

Query: 45  HIDLALPAYNPLPF 4
           HIDL  P YNPL F
Sbjct: 78  HIDLISPVYNPLLF 91


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
           tuberosum]
          Length = 1675

 Score = 79.0 bits (193), Expect(2) = 3e-15
 Identities = 40/75 (53%), Positives = 48/75 (64%), Gaps = 8/75 (10%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLY--------NHSPCKSCGQRLFHCLGHC 49
           F  +EEVRRHSVVK+T+P LLDG+  P P GLY        ++S CK C Q   +C GHC
Sbjct: 16  FMTDEEVRRHSVVKVTSPNLLDGLQLPVPNGLYDPAMGPLDHYSQCKFCCQS--NCSGHC 73

Query: 48  VHIDLALPAYNPLPF 4
            HI+L  P YNPL F
Sbjct: 74  GHIELVSPVYNPLLF 88



 Score = 28.1 bits (61), Expect(2) = 3e-15
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = -1

Query: 239 GASEAVEKVRFSFMT 195
           GASEAVE V FSFMT
Sbjct: 4   GASEAVEAVHFSFMT 18


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
           lycopersicum]
          Length = 1677

 Score = 80.1 bits (196), Expect(2) = 4e-15
 Identities = 40/75 (53%), Positives = 48/75 (64%), Gaps = 8/75 (10%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLY--------NHSPCKSCGQRLFHCLGHC 49
           F  +EEVRRHSVVK+T+P LLDG+  P P GLY        ++S CK C Q   +C GHC
Sbjct: 16  FMTDEEVRRHSVVKVTSPNLLDGLQLPVPNGLYDPAMGPLDHYSQCKFCSQS--NCSGHC 73

Query: 48  VHIDLALPAYNPLPF 4
            HI+L  P YNPL F
Sbjct: 74  GHIELVSPVYNPLLF 88



 Score = 26.6 bits (57), Expect(2) = 4e-15
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = -1

Query: 239 GASEAVEKVRFSFMT 195
           GASE VE V FSFMT
Sbjct: 4   GASETVEAVHFSFMT 18


>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
           gi|482559195|gb|EOA23386.1| hypothetical protein
           CARUB_v10016563mg [Capsella rubella]
          Length = 1651

 Score = 79.0 bits (193), Expect(2) = 4e-15
 Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 8/75 (10%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLYN--------HSPCKSCGQRLFHCLGHC 49
           F   ++VR+HS +K+T+P LLD ++RP PGGLY+           CKSCGQ    C GHC
Sbjct: 21  FMTEQDVRKHSFLKVTSPILLDNVERPVPGGLYDPVMGPLNDKEACKSCGQLRLGCPGHC 80

Query: 48  VHIDLALPAYNPLPF 4
            HI+L  P Y+PL F
Sbjct: 81  GHIELVYPIYHPLLF 95



 Score = 27.7 bits (60), Expect(2) = 4e-15
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -1

Query: 239 GASEAVEKVRFSFMT 195
           GAS+ VE VRFSFMT
Sbjct: 9   GASQVVESVRFSFMT 23


>gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlisea aurea]
          Length = 1626

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 42/76 (55%), Positives = 48/76 (63%), Gaps = 9/76 (11%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDG-MDRPTPGGLYN--------HSPCKSCGQRLFHCLGH 52
           F  +EEVR+HSVV ITN  L+D   D+P PGGLY+         S C SCGQR +HC GH
Sbjct: 11  FMSDEEVRKHSVVGITNLKLVDDDTDKPFPGGLYDPALGPLGDSSKCLSCGQRSYHCPGH 70

Query: 51  CVHIDLALPAYNPLPF 4
             HIDL  P YNPL F
Sbjct: 71  FGHIDLVFPVYNPLSF 86


>ref|XP_004365525.1| RNA polymerase I largest subunit [Capsaspora owczarzaki ATCC 30864]
           gi|320163230|gb|EFW40129.1| RNA polymerase I largest
           subunit [Capsaspora owczarzaki ATCC 30864]
          Length = 1900

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 8/74 (10%)
 Frame = -3

Query: 201 YDNEEVRRHSVVKITNPALLDGMDRPTPGGLY--------NHSPCKSCGQRLFHCLGHCV 46
           YD EE+RR SV +ITNP LLD ++ PTPGGLY        + + C++C     HC GH  
Sbjct: 33  YDPEEIRRLSVKRITNPTLLDNLNHPTPGGLYDPELGPIDSDATCRTCNLASTHCPGHVG 92

Query: 45  HIDLALPAYNPLPF 4
           HI+LALP YNP+ F
Sbjct: 93  HIELALPVYNPIFF 106


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
           arietinum]
          Length = 1660

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 8/75 (10%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLYN--------HSPCKSCGQRLFHCLGHC 49
           F  +EE+ + S VKITNP LLD +  P  GGLY+         SPC+SCGQ  +HC GH 
Sbjct: 19  FLTDEEILKSSRVKITNPILLDTLHSPVAGGLYDPALGPFHEKSPCQSCGQNSYHCPGHF 78

Query: 48  VHIDLALPAYNPLPF 4
            HI+L  PAYNPL F
Sbjct: 79  GHIELVSPAYNPLMF 93


>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
           lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
           ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
          Length = 1678

 Score = 71.2 bits (173), Expect(2) = 7e-13
 Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLYN--------HSPCKSCGQRLFHCLGHC 49
           F   ++VR+HS +K+T+P LLD +  P PGGLY+           C +CGQ    C GHC
Sbjct: 34  FMTEQDVRKHSFLKVTSPILLDNVGEPYPGGLYDPKLGPIEDKKACDTCGQLNLACPGHC 93

Query: 48  VHIDLALPAYNPLPF 4
            HI+L  P Y+PL F
Sbjct: 94  GHIELVYPIYHPLLF 108



 Score = 27.7 bits (60), Expect(2) = 7e-13
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -1

Query: 239 GASEAVEKVRFSFMT 195
           GAS+ VE VRFSFMT
Sbjct: 22  GASQVVESVRFSFMT 36


>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
           gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
           190K chain-like protein [Arabidopsis thaliana]
           gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
           [Arabidopsis thaliana]
          Length = 1670

 Score = 70.9 bits (172), Expect(2) = 9e-13
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLYN--------HSPCKSCGQRLFHCLGHC 49
           F   ++VR+HS +K+T+P L D +  P PGGLY+           C SCGQ    C GHC
Sbjct: 34  FMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDKQACNSCGQLKLACPGHC 93

Query: 48  VHIDLALPAYNPLPF 4
            HI+L  P Y+PL F
Sbjct: 94  GHIELVFPIYHPLLF 108



 Score = 27.7 bits (60), Expect(2) = 9e-13
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -1

Query: 239 GASEAVEKVRFSFMT 195
           GAS+ VE VRFSFMT
Sbjct: 22  GASQVVESVRFSFMT 36


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
           sinensis]
          Length = 1715

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 8/75 (10%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLYNH--------SPCKSCGQRLFHCLGHC 49
           F  +EEVR+ S +K+  P LLD + RP PGGLY+         S CK+CGQR F C GH 
Sbjct: 19  FLTDEEVRKQSFLKLKEPLLLDRVGRPLPGGLYDPILGPLDETSSCKTCGQRQFLCPGHF 78

Query: 48  VHIDLALPAYNPLPF 4
            HIDL +P YNPL F
Sbjct: 79  GHIDLVVPVYNPLLF 93


>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
           gi|557523327|gb|ESR34694.1| hypothetical protein
           CICLE_v10004132mg [Citrus clementina]
          Length = 1715

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 8/75 (10%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLYNH--------SPCKSCGQRLFHCLGHC 49
           F  +EEVR+ S +K+T P LLD + RP PGGLY+         S CK+CGQR F C GH 
Sbjct: 19  FLTDEEVRKQSFLKLTEPLLLDRVSRPLPGGLYDPILGPLDETSSCKTCGQRQFLCPGHF 78

Query: 48  VHIDLALPAYNPLPF 4
            HIDL +  YNPL F
Sbjct: 79  GHIDLVVSVYNPLLF 93


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
           arietinum]
          Length = 1650

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 38/75 (50%), Positives = 46/75 (61%), Gaps = 8/75 (10%)
 Frame = -3

Query: 204 FYDNEEVRRHSVVKITNPALLDGMDRPTPGGLYN--------HSPCKSCGQRLFHCLGHC 49
           F  +EE+ + S VKITNP LLD +  P  GGLY+         SPC+SCGQ  +HC GH 
Sbjct: 19  FLTDEEILKSSRVKITNPILLDTLHSPVAGGLYDPALGPFHEKSPCQSCGQNSYHCPGHF 78

Query: 48  VHIDLALPAYNPLPF 4
            HI+L  P YNPL F
Sbjct: 79  GHIELVSPVYNPLMF 93