BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00012377
         (4423 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...  2210   0.0  
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...  2206   0.0  
gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus not...  2201   0.0  
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ...  2197   0.0  
ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II su...  2194   0.0  
ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II su...  2194   0.0  
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su...  2193   0.0  
gb|ESW20162.1| hypothetical protein PHAVU_006G185800g [Phaseolus...  2192   0.0  
ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citr...  2192   0.0  
gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia...  2191   0.0  
ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II su...  2189   0.0  
gb|EOY28253.1| DNA-directed RNA polymerase family protein isofor...  2187   0.0  
gb|ESW10701.1| hypothetical protein PHAVU_009G230400g [Phaseolus...  2184   0.0  
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...  2182   0.0  
ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II su...  2181   0.0  
gb|EMJ15758.1| hypothetical protein PRUPE_ppa000425mg [Prunus pe...  2180   0.0  
ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago trunca...  2179   0.0  
ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II su...  2177   0.0  
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh...  2177   0.0  
ref|XP_002305136.2| hypothetical protein POPTR_0004s04320g [Popu...  2172   0.0  

>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score = 2210 bits (5727), Expect = 0.0
 Identities = 1096/1169 (93%), Positives = 1122/1169 (95%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET
Sbjct: 24   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 83

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV
Sbjct: 84   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 143

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQDF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 144  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 203

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSR+SAKGG+SGQYIRAT
Sbjct: 204  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 263

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALD
Sbjct: 264  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALD 323

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR
Sbjct: 324  YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 383

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKT
Sbjct: 384  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKT 443

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 444  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 503

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV
Sbjct: 504  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 563

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP+ATKIFVNGCWVGIHRDPDM             VNTEVGVVRDIRLKELRIYTDYGRC
Sbjct: 564  IPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 623

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIVEKQRLLIK++DIQALQ RE+PE+GGWHDLVAKG                  IN
Sbjct: 624  SRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIN 683

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DLV+ARLNPEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 684  DLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 743

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQFRMDT+AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM
Sbjct: 744  VTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 803

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPP
Sbjct: 804  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPP 863

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTRVSGEDV+IGKTTP+ QD+A  P   AARYT+RDHSTSLRHSE G+VDQVLLTTNADG
Sbjct: 864  GTRVSGEDVVIGKTTPIAQDEAQGP---AARYTRRDHSTSLRHSETGMVDQVLLTTNADG 920

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+T+EG+TPDIIVNPHAIPSR
Sbjct: 921  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPSR 980

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR 
Sbjct: 981  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1040

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            LT+ IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1041 LTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1100

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK
Sbjct: 1101 HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1160

Query: 764  LLFQELMSMAIAPRMLTKDVRQMKDQQKK 678
            LLFQELMSMAIAPRMLTKDV+Q KD++KK
Sbjct: 1161 LLFQELMSMAIAPRMLTKDVKQAKDKKKK 1189


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score = 2206 bits (5716), Expect = 0.0
 Identities = 1096/1170 (93%), Positives = 1118/1170 (95%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET
Sbjct: 27   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 86

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV
Sbjct: 87   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 146

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQDF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 147  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSR+SAKGG+SGQYIRAT
Sbjct: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 266

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALD
Sbjct: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALD 326

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR
Sbjct: 327  YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 386

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQFAIKAKT
Sbjct: 387  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKT 446

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 447  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 506

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV
Sbjct: 507  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 566

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP+ATKIFVNGCWVGIHRDPDM             VNTEVGVVRDIRLKELRIYTDYGRC
Sbjct: 567  IPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 626

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIVEKQRLLIKK+DI ALQ RES EEGGWHDLVAKG                  I+
Sbjct: 627  SRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEEEETTMISMTIH 686

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DLV AR+NPEEAY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 687  DLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM
Sbjct: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 806

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPP
Sbjct: 807  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPP 866

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTRVSGEDVIIGKTTP+ Q++A      +ARYT+RDHS SLRHSE GIVDQVLLTTNADG
Sbjct: 867  GTRVSGEDVIIGKTTPIAQEEA---QGQSARYTRRDHSISLRHSETGIVDQVLLTTNADG 923

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TVEG+TPDIIVNPHAIPSR
Sbjct: 924  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR 
Sbjct: 984  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            LTA IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1044 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1103

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK
Sbjct: 1104 HGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1163

Query: 764  LLFQELMSMAIAPRMLTKDVRQMKDQQKKG 675
            LLFQELM+MAIAPRMLTKDV+  KDQ+KKG
Sbjct: 1164 LLFQELMAMAIAPRMLTKDVKPTKDQKKKG 1193


>gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
          Length = 1193

 Score = 2201 bits (5702), Expect = 0.0
 Identities = 1090/1170 (93%), Positives = 1116/1170 (95%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDF ET
Sbjct: 25   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFVET 84

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV
Sbjct: 85   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 144

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQDF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 145  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 204

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSR+S+KGG+SGQYIRAT
Sbjct: 205  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRAT 264

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIR EIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALD
Sbjct: 265  LPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALD 324

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVG GE+CETKKAYYFGYIIHRLLLCALGR
Sbjct: 325  YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGTGEFCETKKAYYFGYIIHRLLLCALGR 384

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKT
Sbjct: 385  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKT 444

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 445  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 504

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV
Sbjct: 505  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 564

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP+ATKIFVNGCWVGIHRDPDM             VNTEVGVVRDIRLKELRIYTDYGRC
Sbjct: 565  IPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 624

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIVEKQRLLIKKRDI+ALQ RE+PEE GWHDLV+ G                  IN
Sbjct: 625  SRPLFIVEKQRLLIKKRDIRALQQRETPEEAGWHDLVSNGFIEYIDTEEEETTMISMTIN 684

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DLV ARLNPEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 685  DLVQARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 744

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM
Sbjct: 745  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 804

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQS+IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP
Sbjct: 805  NQSAIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 864

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTRVSGEDVIIGKTTP+ QD+A     +A+RYT+RDHS SLRHSENGIVDQVLLTTNADG
Sbjct: 865  GTRVSGEDVIIGKTTPIAQDEAQ--GQAASRYTRRDHSISLRHSENGIVDQVLLTTNADG 922

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVRVRS+RIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TVEG+TPDIIVNPHAIPSR
Sbjct: 923  LRFVKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 982

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR 
Sbjct: 983  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1042

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            LTA IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1043 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1102

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK
Sbjct: 1103 HGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1162

Query: 764  LLFQELMSMAIAPRMLTKDVRQMKDQQKKG 675
            LLFQELM+MAIAPRMLTKDV+ + DQ+KKG
Sbjct: 1163 LLFQELMAMAIAPRMLTKDVKPLNDQKKKG 1192


>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
            gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
            Full=DNA-directed RNA polymerase II subunit RPB2;
            Short=RNA polymerase II subunit 2; Short=RNA polymerase
            II subunit B2; AltName: Full=DNA-directed RNA polymerase
            II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
            polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score = 2197 bits (5694), Expect = 0.0
 Identities = 1090/1170 (93%), Positives = 1117/1170 (95%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET
Sbjct: 24   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 83

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV
Sbjct: 84   IYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 143

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQDF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKVLIAQE
Sbjct: 144  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQE 203

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYAFVAEVRSMA+TQNRPPSTMFVRMLSR+SAKGG+SGQYIRAT
Sbjct: 204  KMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 263

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALD
Sbjct: 264  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALD 323

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR
Sbjct: 324  YIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 383

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKT
Sbjct: 384  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKT 443

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 444  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 503

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV
Sbjct: 504  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 563

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP+ATKIFVNG WVGIHRDPDM             VNTEVGVVRDIRLKELRIYTDYGRC
Sbjct: 564  IPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 623

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIVEKQRL+IKK+DIQ LQ RESP+EGGWHDLVAKG                  IN
Sbjct: 624  SRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEEETTMISMTIN 683

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DLV ARLNP +AY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 684  DLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 743

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIM
Sbjct: 744  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIM 803

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR++TMGMRHGSYDKLDDDGLAPP
Sbjct: 804  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPP 863

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTRVSGEDVIIGKTTP++QDDA      A+RYT++DHSTSLRHSE G+VDQVLLTTNADG
Sbjct: 864  GTRVSGEDVIIGKTTPISQDDA---QGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADG 920

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TVEG+TPDIIVNPHAIPSR
Sbjct: 921  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 980

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR 
Sbjct: 981  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1040

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            L+A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1041 LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1100

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK
Sbjct: 1101 HGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1160

Query: 764  LLFQELMSMAIAPRMLTKDVRQMKDQQKKG 675
            LLFQELM+MAIAPRMLTKDV+  KDQ+KKG
Sbjct: 1161 LLFQELMAMAIAPRMLTKDVKLAKDQKKKG 1190


>ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Citrus
            sinensis]
          Length = 1195

 Score = 2194 bits (5684), Expect = 0.0
 Identities = 1091/1171 (93%), Positives = 1116/1171 (95%), Gaps = 1/1171 (0%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDFAET
Sbjct: 27   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAET 86

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV
Sbjct: 87   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 146

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQDF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 147  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSR+SAKGG+SGQYIRAT
Sbjct: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 266

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQNQQVALD
Sbjct: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRGATVGVT++KRIKYAKEILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCALGR
Sbjct: 327  YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT
Sbjct: 387  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 447  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 506

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV
Sbjct: 507  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 566

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP+ATKIFVNGCWVGIHRDP+M             VNTEVGVVRDIRLKELRIYTDYGRC
Sbjct: 567  IPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 626

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIVEKQRLLIKKRDI ALQ RESPE+GGWHDLVAKG                  IN
Sbjct: 627  SRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIN 686

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DLV ARL+PEEAY DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 687  DLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM
Sbjct: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 806

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP
Sbjct: 807  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 866

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTRVSGEDVIIGKTTP++QD+A      A+RYT+RDHS SLRHSE G+VDQVLLTTNADG
Sbjct: 867  GTRVSGEDVIIGKTTPISQDEA---QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG 923

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TVEG+TPDIIVNPHAIPSR
Sbjct: 924  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR 
Sbjct: 984  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            LTA IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1044 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1103

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGAAHFLKERLFDQSDAYR+HVCE CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK
Sbjct: 1104 HGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1163

Query: 764  LLFQELMSMAIAPRMLTK-DVRQMKDQQKKG 675
            LLFQELM+MAIAPRMLTK D +Q KD +KKG
Sbjct: 1164 LLFQELMAMAIAPRMLTKEDTKQSKDHKKKG 1194


>ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cicer
            arietinum]
          Length = 1194

 Score = 2194 bits (5684), Expect = 0.0
 Identities = 1084/1170 (92%), Positives = 1119/1170 (95%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET
Sbjct: 27   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 86

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IYKISFGQIYLSKPMMTESDGET+TLFPKAARLRNLTYSAPLYVDV+KRVIKKGHDGEEV
Sbjct: 87   IYKISFGQIYLSKPMMTESDGETSTLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEV 146

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQDF KVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 147  TETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSR+S+KGG+SGQYIRAT
Sbjct: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRAT 266

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALD
Sbjct: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALD 326

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRGATVGVTKEKRIKYAK+ILQ+EMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR
Sbjct: 327  YIGKRGATVGVTKEKRIKYAKDILQREMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 386

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKT
Sbjct: 387  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKT 446

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 447  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 506

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV
Sbjct: 507  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 566

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP+ATKIFVNGCW+GIHRDPDM             VNTEVGVVRDIRLKELRIYTDYGRC
Sbjct: 567  IPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 626

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIV+KQRLLIKK+DI +LQ RESPEEGGWHDLV+KG                  IN
Sbjct: 627  SRPLFIVDKQRLLIKKKDIHSLQQRESPEEGGWHDLVSKGFIEYIDTEEEETTMISMTIN 686

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DLV ARLNPEEAY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 687  DLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIM
Sbjct: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIM 806

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPP
Sbjct: 807  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPP 866

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTRVSGEDVIIGKTTP++Q++A      AARY+KRDHS SLRHSE GIVDQVLLTTNADG
Sbjct: 867  GTRVSGEDVIIGKTTPLSQEEA---QGQAARYSKRDHSISLRHSETGIVDQVLLTTNADG 923

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TVEG+TPDIIVNPHAIPSR
Sbjct: 924  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR 
Sbjct: 984  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            L+A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1044 LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1103

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGAAHFLKERLFDQSDAYR+HVCE CGLIAIANLKKNSFECRGCKNKTDIVQV+IPYACK
Sbjct: 1104 HGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACK 1163

Query: 764  LLFQELMSMAIAPRMLTKDVRQMKDQQKKG 675
            LLFQELM+MAIAPRMLTK+++ +KDQ+KKG
Sbjct: 1164 LLFQELMAMAIAPRMLTKEIKSIKDQKKKG 1193


>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Solanum
            tuberosum]
          Length = 1191

 Score = 2193 bits (5682), Expect = 0.0
 Identities = 1088/1169 (93%), Positives = 1115/1169 (95%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET
Sbjct: 24   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 83

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV
Sbjct: 84   IYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 143

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQDF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKVLIAQE
Sbjct: 144  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQE 203

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYAFVAEVRSMAE+QNRPPSTMFVRMLSR+SAKGG+SGQYIRAT
Sbjct: 204  KMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 263

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALD
Sbjct: 264  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALD 323

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR
Sbjct: 324  YIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 383

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKT
Sbjct: 384  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKT 443

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 444  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 503

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV
Sbjct: 504  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 563

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP+ATKIFVNG WVGIHRDPDM             VNTEVGVVRDIRLKELRIYTDYGRC
Sbjct: 564  IPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 623

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIVEKQRL+IKK+DIQ LQ RESP+EGGWHDLVAKG                  IN
Sbjct: 624  SRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEEETTMISMTIN 683

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DLV ARLNP +AY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 684  DLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 743

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIM
Sbjct: 744  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIM 803

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+ TMGMRHGSYDKLDDDGLAPP
Sbjct: 804  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRATTMGMRHGSYDKLDDDGLAPP 863

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTRVSGEDVIIGKTTP++QDDA      A+RYT++DHSTSLRHSE G+VDQVLLTTNADG
Sbjct: 864  GTRVSGEDVIIGKTTPISQDDA---QGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADG 920

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TVEG++PDIIVNPHAIPSR
Sbjct: 921  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSR 980

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR 
Sbjct: 981  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1040

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            L+A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1041 LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1100

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK
Sbjct: 1101 HGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1160

Query: 764  LLFQELMSMAIAPRMLTKDVRQMKDQQKK 678
            LLFQELM+MAIAPRMLTKDV+  KDQ+KK
Sbjct: 1161 LLFQELMAMAIAPRMLTKDVKLAKDQKKK 1189


>gb|ESW20162.1| hypothetical protein PHAVU_006G185800g [Phaseolus vulgaris]
          Length = 1194

 Score = 2192 bits (5681), Expect = 0.0
 Identities = 1086/1170 (92%), Positives = 1117/1170 (95%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET
Sbjct: 27   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 86

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IY+ISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHDGEEV
Sbjct: 87   IYRISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEV 146

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQDF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 147  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSR+S+KGG+SGQYIRAT
Sbjct: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRAT 266

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALD
Sbjct: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALD 326

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR
Sbjct: 327  YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 386

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKT
Sbjct: 387  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKT 446

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 447  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQ 506

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV
Sbjct: 507  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 566

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP+ATKIFVNG W+GIHRDPDM             VNTEVGVVRDIRLKELRIYTDYGRC
Sbjct: 567  IPQATKIFVNGSWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 626

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIV+KQRLLIKKRDI ALQ RESPEEGGWHDLV+KG                  IN
Sbjct: 627  SRPLFIVDKQRLLIKKRDIHALQQRESPEEGGWHDLVSKGFIEYIDTEEEETTMISMTIN 686

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DLV ARLNPE+AY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 687  DLVQARLNPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM
Sbjct: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 806

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPP
Sbjct: 807  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPP 866

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTRVSGEDVIIGKTTP++Q++A      A RYT+RDHS SLRHSE G+VDQVLLTTNADG
Sbjct: 867  GTRVSGEDVIIGKTTPISQEEA---QGQALRYTRRDHSISLRHSETGMVDQVLLTTNADG 923

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TVEG+TPDIIVNPHAIPSR
Sbjct: 924  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR 
Sbjct: 984  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            L+A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1044 LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1103

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQV+IPYACK
Sbjct: 1104 HGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACK 1163

Query: 764  LLFQELMSMAIAPRMLTKDVRQMKDQQKKG 675
            LLFQELM+MAIAPRMLTK+++  KDQ+KKG
Sbjct: 1164 LLFQELMAMAIAPRMLTKEIKSAKDQKKKG 1193


>ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citrus clementina]
            gi|557525528|gb|ESR36834.1| hypothetical protein
            CICLE_v10027701mg [Citrus clementina]
          Length = 1195

 Score = 2192 bits (5681), Expect = 0.0
 Identities = 1090/1171 (93%), Positives = 1116/1171 (95%), Gaps = 1/1171 (0%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDFAET
Sbjct: 27   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAET 86

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV
Sbjct: 87   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 146

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQDF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 147  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSR+SAKGG+SGQYIRAT
Sbjct: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 266

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQNQQVALD
Sbjct: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRGATVGVT++KRIKYAKEILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCALGR
Sbjct: 327  YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT
Sbjct: 387  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 447  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 506

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV
Sbjct: 507  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 566

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP+ATKIFVNGCWVGIHRDP+M             VNTEVGVVRDIRLKELRIYTDYGRC
Sbjct: 567  IPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 626

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIVEKQRLLIKKRDI ALQ RESPE+GGWHDLVAKG                  IN
Sbjct: 627  SRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIN 686

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DLV ARL+PEEAY DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 687  DLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM
Sbjct: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 806

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP
Sbjct: 807  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 866

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTRVSGEDVIIGKTTP++QD+A      A+RYT+RDHS SLRHSE G+VDQVLLTTNADG
Sbjct: 867  GTRVSGEDVIIGKTTPISQDEA---QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG 923

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TVEG+TPDIIVNPHAIPSR
Sbjct: 924  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR 
Sbjct: 984  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            LTA IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1044 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1103

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGA+HFLKERLFDQSDAYR+HVCE CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK
Sbjct: 1104 HGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1163

Query: 764  LLFQELMSMAIAPRMLTK-DVRQMKDQQKKG 675
            LLFQELM+MAIAPRMLTK D +Q KD +KKG
Sbjct: 1164 LLFQELMAMAIAPRMLTKEDTKQSKDHKKKG 1194


>gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1195

 Score = 2191 bits (5678), Expect = 0.0
 Identities = 1086/1170 (92%), Positives = 1117/1170 (95%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET
Sbjct: 28   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 87

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV
Sbjct: 88   IYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 147

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQDF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKVLIAQE
Sbjct: 148  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQE 207

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYAFVAEVRSMAE+QNRPPSTMFVRMLSR+SAKGG+SGQYIRAT
Sbjct: 208  KMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 267

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALD
Sbjct: 268  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALD 327

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR
Sbjct: 328  YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 387

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQFAIKAKT
Sbjct: 388  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKT 447

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 448  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 507

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE GTENFEEISPAV
Sbjct: 508  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEXGTENFEEISPAV 567

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP+ATKIFV+G W+GIHRDPDM             VNTEVGVVRDIRLKELRIYTDYGRC
Sbjct: 568  IPQATKIFVBGTWMGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 627

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIVEKQ+LLIKK+DIQ LQ RE+PEEGGWHDLVAKG                  IN
Sbjct: 628  SRPLFIVEKQKLLIKKKDIQQLQQRETPEEGGWHDLVAKGYIEYIDTEEEETTMISMTIN 687

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DLV A +NPE+AY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 688  DLVQASINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 747

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIM
Sbjct: 748  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIM 807

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR++TMGMRHGSYDKLDDDGLAPP
Sbjct: 808  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPP 867

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTRVSGEDVIIGKTTP++QDDA      A+RYT++DHSTSLRHSE G+VDQVLLTTNADG
Sbjct: 868  GTRVSGEDVIIGKTTPISQDDA---QGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADG 924

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+T+EG+TPDIIVNPHAIPSR
Sbjct: 925  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSR 984

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR 
Sbjct: 985  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1044

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            L A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1045 LPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1104

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK
Sbjct: 1105 HGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1164

Query: 764  LLFQELMSMAIAPRMLTKDVRQMKDQQKKG 675
            LLFQELM+MAIAPRMLTKDV+Q +DQ+KKG
Sbjct: 1165 LLFQELMAMAIAPRMLTKDVKQARDQKKKG 1194


>ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus] gi|449479313|ref|XP_004155566.1| PREDICTED:
            DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
          Length = 1199

 Score = 2189 bits (5672), Expect = 0.0
 Identities = 1085/1171 (92%), Positives = 1117/1171 (95%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD AET
Sbjct: 32   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDVAET 91

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHDGEEV
Sbjct: 92   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEV 151

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQDF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 152  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 211

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYAFVAEVRSMAE+QNRPPSTMFVRMLSR+SAKGG+SGQYIRAT
Sbjct: 212  KMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 271

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIR EIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALD
Sbjct: 272  LPYIRNEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALD 331

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRG+TVGVTKEKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLLLCALGR
Sbjct: 332  YIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGR 391

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKT
Sbjct: 392  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKT 451

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 452  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 511

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV
Sbjct: 512  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 571

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP+ATKIFVNGCWVGIHRDP+M             VNTEVGVVRDIRLKELRIYTDYGRC
Sbjct: 572  IPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 631

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIVEKQRLLIKK+DI ALQ RESPE+GGWHDLVAKG                  I+
Sbjct: 632  SRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIS 691

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DL+ AR+NP EAY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 692  DLIQARINPVEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 751

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM
Sbjct: 752  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 811

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP
Sbjct: 812  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 871

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTRVSGEDVIIGKTTP++Q++A      AARY++RDHS SLRHSENGIVDQVLLTTNADG
Sbjct: 872  GTRVSGEDVIIGKTTPISQEEA---QGQAARYSRRDHSISLRHSENGIVDQVLLTTNADG 928

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TVEG+TPDIIVNPHAIPSR
Sbjct: 929  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 988

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR 
Sbjct: 989  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1048

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            L+A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1049 LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1108

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGAAHFLKERLFDQSDAYRIHVCE CGLIAIANLKK+SFECRGCKNKTDIVQV+IPYACK
Sbjct: 1109 HGAAHFLKERLFDQSDAYRIHVCECCGLIAIANLKKSSFECRGCKNKTDIVQVYIPYACK 1168

Query: 764  LLFQELMSMAIAPRMLTKDVRQMKDQQKKGN 672
            LLFQELM+MAIAPRM TK+++ +KDQ+KKG+
Sbjct: 1169 LLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1199


>gb|EOY28253.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
            cacao]
          Length = 1189

 Score = 2187 bits (5667), Expect = 0.0
 Identities = 1085/1170 (92%), Positives = 1118/1170 (95%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET
Sbjct: 24   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 83

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV
Sbjct: 84   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 143

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQDF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 144  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 203

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSR+SAKGG+SGQYIRAT
Sbjct: 204  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 263

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALD
Sbjct: 264  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALD 323

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVG++CETKKAYYFGYIIHRLLLCALGR
Sbjct: 324  YIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGDFCETKKAYYFGYIIHRLLLCALGR 383

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQFAIKAKT
Sbjct: 384  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKT 443

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 444  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 503

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV
Sbjct: 504  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 563

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP+ATKIFVNGCWVG+HR+PDM             VNTEVGVVRDIRLKELRIYTDYGRC
Sbjct: 564  IPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 623

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIVEKQRLLIKK+DI ALQ RESPE+GGWHDLVAKG                  IN
Sbjct: 624  SRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIN 683

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DLV AR+NPEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 684  DLVQARVNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 743

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM
Sbjct: 744  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 803

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPP
Sbjct: 804  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPP 863

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTRVSGEDVIIGKTTP++Q++A      A+RY++RDHS SLRHSE GIVDQVLLTTNADG
Sbjct: 864  GTRVSGEDVIIGKTTPISQEEA---QGQASRYSRRDHSISLRHSETGIVDQVLLTTNADG 920

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TVEG+TPDIIVNPHAIPSR
Sbjct: 921  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 980

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFE MYNGHTGR 
Sbjct: 981  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRR 1040

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            L+A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1041 LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1100

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQV+IPYACK
Sbjct: 1101 HGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACK 1160

Query: 764  LLFQELMSMAIAPRMLTKDVRQMKDQQKKG 675
            LLFQELM+MAIAPRMLTK+    KDQ+KKG
Sbjct: 1161 LLFQELMAMAIAPRMLTKE--PPKDQKKKG 1188


>gb|ESW10701.1| hypothetical protein PHAVU_009G230400g [Phaseolus vulgaris]
          Length = 1196

 Score = 2184 bits (5658), Expect = 0.0
 Identities = 1078/1169 (92%), Positives = 1116/1169 (95%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD AET
Sbjct: 25   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDSAET 84

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            +YKISFGQIYLSKPMMTESDGETA+LFPKAARLRNLTYSAPLYVDV+KRVIKKGHDGEEV
Sbjct: 85   VYKISFGQIYLSKPMMTESDGETASLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEV 144

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQDF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 145  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 204

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSR+S+KGG+SGQYIRAT
Sbjct: 205  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRAT 264

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMM+LLRPSLEEAFVIQNQQVALD
Sbjct: 265  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMDLLRPSLEEAFVIQNQQVALD 324

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRG+TVGVTKEKRIKYAKEILQKEMLPHVG+GEYCETKKAYYFGYIIHRLLLCALGR
Sbjct: 325  YIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGR 384

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT
Sbjct: 385  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 444

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            +TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 445  VTSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 504

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV
Sbjct: 505  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 564

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP+ATKIFVNGCW+GIHRDPDM             VNTEVGVVRDIRLKELRIYTDYGRC
Sbjct: 565  IPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 624

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIV++QRLLIKK+DI ALQ RESPEEGGWHDLV+KG                  IN
Sbjct: 625  SRPLFIVDRQRLLIKKKDIHALQQRESPEEGGWHDLVSKGFIEYIDTEEEETTMISMTIN 684

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DLV AR+NPEEAY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 685  DLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 744

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIM
Sbjct: 745  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIM 804

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPP
Sbjct: 805  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPP 864

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTRVSGEDVIIGKTTP++Q++A      A RYT+RDHS SLRHSE GIVDQVLLTTNADG
Sbjct: 865  GTRVSGEDVIIGKTTPISQEEA---QGQALRYTRRDHSISLRHSETGIVDQVLLTTNADG 921

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TVEG+TPDIIVNPHAIPSR
Sbjct: 922  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 981

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD+ISKALHKCGYQMRGFE MYNGHTGR 
Sbjct: 982  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKALHKCGYQMRGFETMYNGHTGRR 1041

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            L+A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1042 LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1101

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGAAHFLKERLFDQSDAYR+HVCE+CGLIAIANLKKNSFECRGCKNKTDIVQV IPYACK
Sbjct: 1102 HGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVFIPYACK 1161

Query: 764  LLFQELMSMAIAPRMLTKDVRQMKDQQKK 678
            LLFQELM+MAIAPRMLTKDV+  KDQ+++
Sbjct: 1162 LLFQELMAMAIAPRMLTKDVKSKKDQRRR 1190


>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera] gi|147841183|emb|CAN72948.1| hypothetical
            protein VITISV_033708 [Vitis vinifera]
            gi|302143287|emb|CBI21848.3| unnamed protein product
            [Vitis vinifera]
          Length = 1193

 Score = 2182 bits (5654), Expect = 0.0
 Identities = 1078/1170 (92%), Positives = 1117/1170 (95%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDF ET
Sbjct: 26   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFLET 85

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR+IKKGHD EEV
Sbjct: 86   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDLEEV 145

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQ+F KVFIGKVPIMLRSSYCT+YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 146  TETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 205

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPS+MFVRMLSR+SAKGG+SGQYIRAT
Sbjct: 206  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRAT 265

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALD
Sbjct: 266  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALD 325

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR
Sbjct: 326  YIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 385

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT
Sbjct: 386  RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 445

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 446  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 505

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAV
Sbjct: 506  LHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAV 565

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP++TKIFVNGCWVGIHR+PD+             VNTEVGV+RDIRLKELR+YTDYGRC
Sbjct: 566  IPQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRC 625

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIVEKQRLLIKKRDI+ALQ RESPE+GGWHDLV+KG                  IN
Sbjct: 626  SRPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTIN 685

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DL++ARLNPEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 686  DLISARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 745

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM
Sbjct: 746  VTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 805

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPP
Sbjct: 806  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPP 865

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTRVSGEDVIIGKTTP++QDD+      A+RYT+RDHSTSLRHSE+G+VDQVLLTTNADG
Sbjct: 866  GTRVSGEDVIIGKTTPISQDDS---QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADG 922

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TVEG+TPDIIVNPHAIPSR
Sbjct: 923  LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 982

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR 
Sbjct: 983  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1042

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            LTA IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1043 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1102

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK
Sbjct: 1103 HGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1162

Query: 764  LLFQELMSMAIAPRMLTKDVRQMKDQQKKG 675
            LLFQELM+MAIAPRMLTK+V+  KDQ+KKG
Sbjct: 1163 LLFQELMAMAIAPRMLTKEVKPPKDQKKKG 1192


>ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1192

 Score = 2181 bits (5651), Expect = 0.0
 Identities = 1083/1170 (92%), Positives = 1113/1170 (95%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET
Sbjct: 27   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 86

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHDGEEV
Sbjct: 87   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEV 146

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TE QDF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 147  TEAQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSR+S+KGG+SGQYIRAT
Sbjct: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRAT 266

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDF  TQMMELLRPSLEEAFVIQNQQVALD
Sbjct: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSYTQMMELLRPSLEEAFVIQNQQVALD 326

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR
Sbjct: 327  YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 386

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKT
Sbjct: 387  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKT 446

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 447  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 506

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV
Sbjct: 507  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 566

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP+ATKIFVNGCW+GIHRDPDM             VNTEVGVVRDIRLKELRIYTDYGRC
Sbjct: 567  IPQATKIFVNGCWMGIHRDPDMLVRTLKKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 626

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIV+KQRLLIKK+DI ALQ RESPE+GGWHDLV+KG                  IN
Sbjct: 627  SRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMISMTIN 686

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DLV AR+NPE+AY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 687  DLVQARINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV+IACYSGYNQEDSVIM
Sbjct: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVSIACYSGYNQEDSVIM 806

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPP
Sbjct: 807  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPP 866

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTRVSGEDVIIGKTTP++Q++A      A RYT+RDHS SLRHSE GIVDQVLLTTNADG
Sbjct: 867  GTRVSGEDVIIGKTTPISQEEA---QGQALRYTRRDHSISLRHSETGIVDQVLLTTNADG 923

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TVEG+TPDIIVNPHAIPSR
Sbjct: 924  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR 
Sbjct: 984  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            L+A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1044 LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1103

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQV+IPYACK
Sbjct: 1104 HGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACK 1163

Query: 764  LLFQELMSMAIAPRMLTKDVRQMKDQQKKG 675
            LLFQELM+MAIAPRMLTK+V+     QKKG
Sbjct: 1164 LLFQELMAMAIAPRMLTKEVK--TTNQKKG 1191


>gb|EMJ15758.1| hypothetical protein PRUPE_ppa000425mg [Prunus persica]
          Length = 1192

 Score = 2180 bits (5649), Expect = 0.0
 Identities = 1076/1170 (91%), Positives = 1113/1170 (95%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ DFAET
Sbjct: 24   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAET 83

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
             Y+I FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+K ++KKGHDGEEV
Sbjct: 84   TYRIKFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKSIVKKGHDGEEV 143

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQDF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 144  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 203

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRML+R+S+KGG+SGQYIRAT
Sbjct: 204  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLARTSSKGGSSGQYIRAT 263

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIR EIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALD
Sbjct: 264  LPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALD 323

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRGATVGV++EKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLLLCALGR
Sbjct: 324  YIGKRGATVGVSREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGR 383

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGK++NLQFAIKAKT
Sbjct: 384  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKELNLQFAIKAKT 443

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 444  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 503

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV
Sbjct: 504  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 563

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP+ATKIFVNGCWVGIHRDP+M             VNTEVGVVRDIRLKELRIYTDYGRC
Sbjct: 564  IPQATKIFVNGCWVGIHRDPEMLVKTLRKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 623

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIV+KQRLLIKK+DI ALQ RE+PE+GGWHDLVAKG                  IN
Sbjct: 624  SRPLFIVDKQRLLIKKKDIHALQQRENPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIN 683

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DLV ARLNPEEAY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 684  DLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 743

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIM
Sbjct: 744  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIM 803

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQSSIDRGFFRS+FFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPP
Sbjct: 804  NQSSIDRGFFRSIFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPP 863

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTRVSGEDVIIGKTTPM QD+A     +A+RYT+RDHS SLRHSE GIVDQVLLTTNADG
Sbjct: 864  GTRVSGEDVIIGKTTPMAQDEAQ--GQAASRYTRRDHSISLRHSETGIVDQVLLTTNADG 921

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TVEGVTPDIIVNPHAIPSR
Sbjct: 922  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGVTPDIIVNPHAIPSR 981

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALH CGYQMRGFE MYNGHTGR 
Sbjct: 982  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHSCGYQMRGFETMYNGHTGRR 1041

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            L+A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1042 LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1101

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQV+IPYACK
Sbjct: 1102 HGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACK 1161

Query: 764  LLFQELMSMAIAPRMLTKDVRQMKDQQKKG 675
            LLFQELMSMAIAPRMLTKD++  KDQ+KKG
Sbjct: 1162 LLFQELMSMAIAPRMLTKDIKPAKDQKKKG 1191


>ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
            gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase
            [Medicago truncatula]
          Length = 1213

 Score = 2179 bits (5646), Expect = 0.0
 Identities = 1086/1188 (91%), Positives = 1118/1188 (94%), Gaps = 18/1188 (1%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET
Sbjct: 28   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 87

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHDGEEV
Sbjct: 88   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEV 147

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQDF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 148  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 207

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYA+V EVRSMAE+QNRPPSTMFVRMLSR+SAKGG+SGQYIRAT
Sbjct: 208  KMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRASAKGGSSGQYIRAT 267

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALD
Sbjct: 268  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALD 327

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRG+TVGVTKEKRIKYAK+ILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR
Sbjct: 328  YIGKRGSTVGVTKEKRIKYAKDILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 387

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKT
Sbjct: 388  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKT 447

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 448  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 507

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE------ 2583
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE      
Sbjct: 508  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEVLVISF 567

Query: 2582 --EISPAVIPEATKIFVNGCWVGIHRDPDM----------XXXXXXXXXXXXXVNTEVGV 2439
              EISPAVIP+ATKIFVNGCW+GIHRDPDM                       VNTEVGV
Sbjct: 568  IKEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRFSAEGFDVVQVDVNTEVGV 627

Query: 2438 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXX 2259
            VRDIRLKELRIYTDYGRCSRPLFIV+KQRLLIKK+DI +LQ RESPE+GGWHDLV+KG  
Sbjct: 628  VRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESPEDGGWHDLVSKGFI 687

Query: 2258 XXXXXXXXXXXXXXXXINDLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQ 2079
                            INDLV ARLNPEEAY+DTYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 688  EYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQ 747

Query: 2078 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 1899
            SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
Sbjct: 748  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 807

Query: 1898 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 1719
            IVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTM
Sbjct: 808  IVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTM 867

Query: 1718 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLR 1539
            GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP++Q++       AARY+KRDHS SLR
Sbjct: 868  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEE---QQGQAARYSKRDHSISLR 924

Query: 1538 HSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFT 1359
            HSE GIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+T
Sbjct: 925  HSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 984

Query: 1358 VEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1179
            VEG+TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC
Sbjct: 985  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1044

Query: 1178 GYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 999
            GYQMRGFE MYNGHTGR L+A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR
Sbjct: 1045 GYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1104

Query: 998  SRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECR 819
            SRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECR
Sbjct: 1105 SRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECR 1164

Query: 818  GCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKDVRQMKDQQKKG 675
            GCKNKTDIVQV+IPYACKLLFQELM+MAIAPRMLTK+V+ +KDQ+KKG
Sbjct: 1165 GCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVKAIKDQKKKG 1212


>ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1193

 Score = 2177 bits (5641), Expect = 0.0
 Identities = 1081/1170 (92%), Positives = 1112/1170 (95%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET
Sbjct: 27   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 86

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRV+KKGHDGEEV
Sbjct: 87   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVVKKGHDGEEV 146

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQD  KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE
Sbjct: 147  TETQDLTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYA+VAEVRSMAE+QNRPPSTMFVRMLSR+S+KGG+SGQYIRAT
Sbjct: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRAT 266

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIRTEIPIIIVFRALGFVADKDILEHICYDF DT MMELLRPSLEEAFVIQNQQVALD
Sbjct: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTLMMELLRPSLEEAFVIQNQQVALD 326

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR
Sbjct: 327  YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 386

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKT
Sbjct: 387  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKT 446

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ
Sbjct: 447  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 506

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV
Sbjct: 507  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 566

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP+ATKIFVNGCW+GIHRDPDM             VNTEVGVVRDI LKELRIYTDYGRC
Sbjct: 567  IPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIILKELRIYTDYGRC 626

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIV+KQRLLIKK+DI ALQ RESPE+GGWHDLV+KG                  IN
Sbjct: 627  SRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMISMTIN 686

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DLV AR+NPE+AY  TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 687  DLVQARINPEDAYAGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM
Sbjct: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 806

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPP
Sbjct: 807  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPP 866

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTRVSGEDVIIGKTTP++Q++A      A RYT+RDHS SLRHSE GIVDQVLLTTNADG
Sbjct: 867  GTRVSGEDVIIGKTTPISQEEA---QGQALRYTRRDHSISLRHSETGIVDQVLLTTNADG 923

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TVEG+TPDIIVNPHAIPSR
Sbjct: 924  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR 
Sbjct: 984  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            L+A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1044 LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1103

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQV+IPYACK
Sbjct: 1104 HGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACK 1163

Query: 764  LLFQELMSMAIAPRMLTKDVRQMKDQQKKG 675
            LLFQELM+MAIAPRMLTK+V+   +Q+KKG
Sbjct: 1164 LLFQELMAMAIAPRMLTKEVK-TTNQKKKG 1192


>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1200

 Score = 2177 bits (5640), Expect = 0.0
 Identities = 1079/1169 (92%), Positives = 1113/1169 (95%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG Q DFAET
Sbjct: 33   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQPDFAET 92

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHDGEEV
Sbjct: 93   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEV 152

Query: 3824 TETQDFGKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 3645
            TETQDF KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKVLIAQE
Sbjct: 153  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQE 212

Query: 3644 KMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGASGQYIRAT 3465
            KMSTNHVYVFKKRQPNKYA+VAEVRSMAE QNRPPSTMFVRMLSR+SAKGG+SGQYIRAT
Sbjct: 213  KMSTNHVYVFKKRQPNKYAYVAEVRSMAEAQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 272

Query: 3464 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVIQNQQVALD 3285
            LPYIRTEIPIIIVFRALGFVADKDILEHIC++  DTQMMELLRPSLEEAFVIQNQQVALD
Sbjct: 273  LPYIRTEIPIIIVFRALGFVADKDILEHICFNSSDTQMMELLRPSLEEAFVIQNQQVALD 332

Query: 3284 YIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 3105
            YIGKRG+TVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR
Sbjct: 333  YIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 392

Query: 3104 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 2925
            R EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQF IKAKT
Sbjct: 393  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFXIKAKT 452

Query: 2924 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 2745
            ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL+SPIGREGKLAKPRQ
Sbjct: 453  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLBSPIGREGKLAKPRQ 512

Query: 2744 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 2565
            LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV
Sbjct: 513  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 572

Query: 2564 IPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELRIYTDYGRC 2385
            IP+ATKIFVNG WVGIHR+PDM             VNTEVGVVRDIRLKELRIYTDYGRC
Sbjct: 573  IPQATKIFVNGLWVGIHRNPDMLVSTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 632

Query: 2384 SRPLFIVEKQRLLIKKRDIQALQARESPEEGGWHDLVAKGXXXXXXXXXXXXXXXXXXIN 2205
            SRPLFIVEKQRLLIKK+D+QALQ RESP++GGWH+LVAKG                  IN
Sbjct: 633  SRPLFIVEKQRLLIKKKDVQALQQRESPDDGGWHELVAKGFIEYIDTEEEETTMISMTIN 692

Query: 2204 DLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 2025
            DL++A++NP EAY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 693  DLLSAKVNPTEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 752

Query: 2024 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 1845
            VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM
Sbjct: 753  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 812

Query: 1844 NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 1665
            NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP
Sbjct: 813  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 872

Query: 1664 GTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRHSENGIVDQVLLTTNADG 1485
            GTR SGEDVIIGKTTP++ DDA      AARYTKRDHSTSLRHSE G+VDQVLLTTNADG
Sbjct: 873  GTRCSGEDVIIGKTTPISPDDA---QGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADG 929

Query: 1484 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTVEGVTPDIIVNPHAIPSR 1305
            LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TVEG++PDIIVNPHAIPSR
Sbjct: 930  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSR 989

Query: 1304 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRP 1125
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR 
Sbjct: 990  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1049

Query: 1124 LTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 945
            L++ IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1050 LSSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1109

Query: 944  HGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 765
            HGAAHFLKERLFDQSDAYRIHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK
Sbjct: 1110 HGAAHFLKERLFDQSDAYRIHVCEQCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1169

Query: 764  LLFQELMSMAIAPRMLTKDVRQMKDQQKK 678
            LLFQELMSMAIAPRMLTKD++Q K+Q+KK
Sbjct: 1170 LLFQELMSMAIAPRMLTKDIKQSKEQRKK 1198


>ref|XP_002305136.2| hypothetical protein POPTR_0004s04320g [Populus trichocarpa]
            gi|550340301|gb|EEE85647.2| hypothetical protein
            POPTR_0004s04320g [Populus trichocarpa]
          Length = 1215

 Score = 2172 bits (5629), Expect = 0.0
 Identities = 1086/1187 (91%), Positives = 1114/1187 (93%), Gaps = 17/1187 (1%)
 Frame = -3

Query: 4184 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 4005
            DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET
Sbjct: 31   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 90

Query: 4004 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 3825
            IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV
Sbjct: 91   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 150

Query: 3824 TETQDFGKVFIGK--------VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 3669
            TETQDF KVFIGK        VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS
Sbjct: 151  TETQDFTKVFIGKASIMNYLFVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 210

Query: 3668 EKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAETQNRPPSTMFVRMLSRSSAKGGA 3489
            EKVLIAQEKMSTNHVYVFKKRQPNKYA+V EVRSMAE+QNRPPSTMFVRMLSR+SAKGG+
Sbjct: 211  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 270

Query: 3488 SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFKDTQMMELLRPSLEEAFVI 3309
            SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVI
Sbjct: 271  SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVI 330

Query: 3308 QNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHR 3129
            QNQQVALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHR
Sbjct: 331  QNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHR 390

Query: 3128 LLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 2949
            LLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNL
Sbjct: 391  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNL 450

Query: 2948 QFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 2769
            QFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE
Sbjct: 451  QFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 510

Query: 2768 GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 2589
            GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN
Sbjct: 511  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 570

Query: 2588 FEEISPAVIPEATKIFVNGCWVGIHRDPDMXXXXXXXXXXXXXVNTEVGVVRDIRLKELR 2409
            FEEISPAVIP+ATKIFVNG WVGIHRDPDM             VNTEVGVVRDIRLKELR
Sbjct: 571  FEEISPAVIPQATKIFVNGGWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELR 630

Query: 2408 IYTDYGRCSRPLFIVEKQRLLIKKRDIQALQARES---------PEEGGWHDLVAKGXXX 2256
            IYTDYGRCSRPLFIVEKQ+LLI+K+DI ALQ R S           EGGWHDLV+KG   
Sbjct: 631  IYTDYGRCSRPLFIVEKQKLLIRKKDIHALQQRVSHLIYNDHLFKYEGGWHDLVSKGFIE 690

Query: 2255 XXXXXXXXXXXXXXXINDLVTARLNPEEAYTDTYTHCEIHPSLILGVCASIIPFPDHNQS 2076
                           I+DLV AR+NPEEAY+DTYTHCEIHPSLILGVCASIIPFPDHNQS
Sbjct: 691  YIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQS 750

Query: 2075 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 1896
            PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI
Sbjct: 751  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 810

Query: 1895 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 1716
            VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG
Sbjct: 811  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 870

Query: 1715 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPMNQDDAHVPSSSAARYTKRDHSTSLRH 1536
            MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+ Q++A      +ARYT+RDHS SLRH
Sbjct: 871  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEA---QGQSARYTRRDHSISLRH 927

Query: 1535 SENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPFTV 1356
            SE G+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP+TV
Sbjct: 928  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 987

Query: 1355 EGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1176
            EG+TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG
Sbjct: 988  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1047

Query: 1175 YQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 996
            YQMRGFE MYNGHTGR L+A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
Sbjct: 1048 YQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1107

Query: 995  RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRG 816
            RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRG
Sbjct: 1108 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG 1167

Query: 815  CKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKDVRQMKDQQKKG 675
            CKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLTKD++Q K Q+KKG
Sbjct: 1168 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDIKQAKSQKKKG 1214