BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00012095
         (1335 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contain...   143   1e-36
ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]...   140   4e-35
ref|XP_002307275.1| predicted protein [Populus trichocarpa]            67   1e-08
ref|XP_002300438.2| hypothetical protein POPTR_0001s38890g [Popu...    61   1e-06

>sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement
            protein; Short=MP; Contains: RecName: Full=Capsid
            protein; Short=CP; Contains: RecName: Full=Aspartic
            protease; Short=PR; Contains: RecName: Full=Reverse
            transcriptase; Short=RT gi|34328896|gb|AAO67368.1|
            polyprotein 1 [Petunia vein clearing virus]
          Length = 2180

 Score =  143 bits (361), Expect(2) = 1e-36
 Identities = 76/180 (42%), Positives = 105/180 (58%), Gaps = 8/180 (4%)
 Frame = -3

Query: 1264 NPDFSPDYPNPPTREVLISRRHSHEIQVFKEYGGSILNPFGTNPHYPFGHIFILNPDDFP 1085
            NP  + D   P    V + RR  +E+QVFK+YGGSIL PFG +P YPF HIFI NP DF 
Sbjct: 1854 NPPEAFDLDYPWDTSVFLERRTFYELQVFKKYGGSILRPFGVDPEYPFAHIFIPNPTDFS 1913

Query: 1084 SPLLWFFWYLCQQYHILVEINSSLFLK--EFTFTVKEFLSWFKSLDDWKQIFQTFP--KH 917
              LLW FWYL   +HIL+E   S F K  +    + +FL WF + + W  +F+     K 
Sbjct: 1914 EDLLWMFWYLLNHFHILMEFRCSKFSKFDQVNPWMMKFLLWFNNHNYWASLFKCMKGIKK 1973

Query: 916  YLVLEFYRPVQNQH----PLPSSSLYQVNSITILDLPQKYSEAERHIFAQNRIILQKFGP 749
            Y+V+ FYRPV         LP SS+ + N +++L+   +YSE +R IF +N+ I ++  P
Sbjct: 1974 YVVIWFYRPVNYYQGKLCALPHSSIVKWNHVSVLNDEDEYSELQRFIFQENKCIPKEIWP 2033



 Score = 38.1 bits (87), Expect(2) = 1e-36
 Identities = 15/21 (71%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = -2

Query: 767  PPEIWPGDLGSWNY-FTNHPH 708
            P EIWPG LGSWNY  ++HPH
Sbjct: 2028 PKEIWPGSLGSWNYGNSDHPH 2048


>ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]
            gi|82061579|sp|Q91DM0.1|POLG_PVCV1 RecName: Full=Genome
            polyprotein; Contains: RecName: Full=Movement protein;
            Short=MP; Contains: RecName: Full=Capsid protein;
            Short=CP; Contains: RecName: Full=Aspartic protease;
            Short=PR; Contains: RecName: Full=Reverse transcriptase;
            Short=RT gi|14574598|gb|AAK68664.1| ORF I polyprotein
            [petunia vein clearing virus]
          Length = 2179

 Score =  140 bits (354), Expect(2) = 4e-35
 Identities = 87/235 (37%), Positives = 120/235 (51%), Gaps = 40/235 (17%)
 Frame = -3

Query: 1333 VTDFLSRPDTF----KTKPLVAMIR----------------STNPDFSPDY---PNPPT- 1226
            + DFLSRP  F    K  P V M +                ST   +   +    NPP  
Sbjct: 1798 LADFLSRPHEFSQRLKNSPKVLMFQRRTRSSSTKSKADSSQSTGSSYKLSHNLPENPPEV 1857

Query: 1225 --------REVLISRRHSHEIQVFKEYGGSILNPFGTNPHYPFGHIFILNPDDFPSPLLW 1070
                      V + RR  +E+QVFK+YGGSIL PFG +P YPF HIFI NP DF   LLW
Sbjct: 1858 FNLDYPWDTSVFLERRTFYELQVFKKYGGSILRPFGVDPEYPFAHIFIPNPTDFSEDLLW 1917

Query: 1069 FFWYLCQQYHILVEINSSLFLK--EFTFTVKEFLSWFKSLDDWKQIFQTFP--KHYLVLE 902
             FWYL   +HIL++   S F K  +    + +FL WF + + W  +F+     K Y+V+ 
Sbjct: 1918 MFWYLLNHFHILMKFRCSKFSKIDQVNPWMLKFLLWFNNHNYWASLFKCMKGIKKYVVIW 1977

Query: 901  FYRPVQNQH----PLPSSSLYQVNSITILDLPQKYSEAERHIFAQNRIILQKFGP 749
            FYRPV         LP SS+ + N +++L+   +YSE +R IF +N+ I ++  P
Sbjct: 1978 FYRPVNYYQGKLCALPHSSIVKWNHVSVLNDEDEYSELQRFIFQENKCIPKEIWP 2032



 Score = 35.8 bits (81), Expect(2) = 4e-35
 Identities = 14/21 (66%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -2

Query: 767  PPEIWPGDLGSWNY-FTNHPH 708
            P EIWPG  GSWNY  ++HPH
Sbjct: 2027 PKEIWPGSSGSWNYGNSDHPH 2047


>ref|XP_002307275.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score = 67.4 bits (163), Expect = 1e-08
 Identities = 49/163 (30%), Positives = 72/163 (44%), Gaps = 29/163 (17%)
 Frame = -3

Query: 1333 VTDFLSRPDTFKTK--PLVAMIRSTN-PDFSPDYPN---PPTREVLISRRHSHEIQ---- 1184
            + D L+RP   +T   PL+ M  S+N P  S D+P    PP  + ++   H+ ++Q    
Sbjct: 281  IPDMLTRPPKTQTLLLPLILMASSSNLPPPSQDFPTDDLPPLAQEMVLN-HTLDLQAKDK 339

Query: 1183 VFKEYGGSILN---------PFGTNPHYPFGHIFILNPDD-FPSPLLWFFWYLCQQYHIL 1034
            +F      +LN           G +P YPF H+F   P   FP  L +F WY C  YHI 
Sbjct: 340  LFSLQDHLLLNYDMSSLCFQSLGIHPKYPFIHLFTFKPSGLFPKELYFFLWYFCHLYHIA 399

Query: 1033 VEINSSLFLKEFTFT---------VKEFLSWFKSLDDWKQIFQ 932
            +E  +  FL     T           +FL+WF +   W  + Q
Sbjct: 400  IEFPTDCFLSSLLRTSWPADSWYYTLKFLTWFHNPTQWISLLQ 442


>ref|XP_002300438.2| hypothetical protein POPTR_0001s38890g [Populus trichocarpa]
            gi|550349213|gb|EEE85243.2| hypothetical protein
            POPTR_0001s38890g [Populus trichocarpa]
          Length = 309

 Score = 60.8 bits (146), Expect = 1e-06
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 30/164 (18%)
 Frame = -3

Query: 1333 VTDFLSRPDTFKTK--PLVAMIRSTN-----PDFSPDYPNPPTREVLISRRHSHEIQ--- 1184
            + D L+RP   +T   PL+ +   +N      DF  D   P  +E +++  H+ ++Q   
Sbjct: 139  IPDMLTRPPKTQTLLLPLILIASFSNLAPPDQDFPTDDLPPLAQETVLN--HTLDLQAKD 196

Query: 1183 -VFKEYGGSILN---------PFGTNPHYPFGHIFILNPDD-FPSPLLWFFWYLCQQYHI 1037
             +F      +LN           G +P YPF H+F   P   FP  L +F WY C  YHI
Sbjct: 197  KLFSLQDYLLLNYNMSSFCFQSLGIHPKYPFIHLFTFKPSGLFPKELYFFLWYFCHLYHI 256

Query: 1036 LVEINSSLFLKEFTFT---------VKEFLSWFKSLDDWKQIFQ 932
             +E  +  FL     T           +FL+WF +   W  + Q
Sbjct: 257  AIEFPTDCFLSSLLRTYWPADSWYYTLKFLTWFHNPTQWISLLQ 300