BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00011781
         (920 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   370   e-100
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   370   e-100
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   368   2e-99
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   366   6e-99
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     366   7e-99
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        362   1e-97
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]           361   2e-97
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               359   7e-97
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                359   7e-97
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   359   9e-97
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]         358   2e-96
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]           358   2e-96
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   357   3e-96
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   357   3e-96
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   357   3e-96
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   357   5e-96
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   357   5e-96
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     357   5e-96
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   356   8e-96
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   355   1e-95

>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  370 bits (949), Expect = e-100
 Identities = 174/306 (56%), Positives = 226/306 (73%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y+ +G+TI+G V AA S S  +++AT LWHMRLGH  E  L  L+K+GLL G    KL+F
Sbjct: 616  YHLRGTTILGNV-AAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKF 674

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHC+ GK  RVKF T+ H T+GILDYVHSD+WGPA+  S GG  Y +T VDD+SR+VW 
Sbjct: 675  CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWP 734

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+K     +F +WK  VE QT RK+K+LRTDNG E+ S  F+  C+  GIVRH+TV 
Sbjct: 735  YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVP 794

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV+ERMNRT++ K RC+LSNAGL ++FWAEAV+ A +L+NR PS A+  KTP+E
Sbjct: 795  HTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 854

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            VWS  P  +Y  LR+FG TAY HV+  KL+PRA K +F+G+ +GVKGY+LWC E KK ++
Sbjct: 855  VWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVI 913

Query: 902  SRDVTF 919
            SR+V F
Sbjct: 914  SRNVVF 919


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  370 bits (949), Expect = e-100
 Identities = 174/306 (56%), Positives = 226/306 (73%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y+ +G+TI+G V AA S S  +++AT LWHMRLGH  E  L  L+K+GLL G    KL+F
Sbjct: 409  YHLRGTTILGNV-AAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKF 467

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHC+ GK  RVKF T+ H T+GILDYVHSD+WGPA+  S GG  Y +T VDD+SR+VW 
Sbjct: 468  CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWP 527

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+K     +F +WK  VE QT RK+K+LRTDNG E+ S  F+  C+  GIVRH+TV 
Sbjct: 528  YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVP 587

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV+ERMNRT++ K RC+LSNAGL ++FWAEAV+ A +L+NR PS A+  KTP+E
Sbjct: 588  HTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 647

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            VWS  P  +Y  LR+FG TAY HV+  KL+PRA K +F+G+ +GVKGY+LWC E KK ++
Sbjct: 648  VWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVI 706

Query: 902  SRDVTF 919
            SR+V F
Sbjct: 707  SRNVVF 712


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
            gi|20087076|gb|AAM10749.1|AC112514_2 Putative
            retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  368 bits (945), Expect = 2e-99
 Identities = 173/306 (56%), Positives = 226/306 (73%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y+ +G+TI+G V AA S S  +++AT LWHMRLGH  E  L  L+K+GLL G    KL+F
Sbjct: 370  YHLRGTTILGNV-AAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIKKLKF 428

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHC+ GK  RVKF T+ H T+GILDYVHSD+WGPA+  S GG  Y +T VDD+SR+VW 
Sbjct: 429  CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWP 488

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+K     +F +WK  VE QT RK+K+LRTDNG ++ S  F+  C+  GIVRH+TV 
Sbjct: 489  YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMDFCSKIFKSYCKSEGIVRHYTVP 548

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV+ERMNRT++ K RCMLSNAGL ++FWAEAV+ A +L+NR PS A+  KTP++
Sbjct: 549  HTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIK 608

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            VWS  P  +Y  LR+FG  AY HV+ SKL+PRA K +F+G+ +GVKGY+LWC E KK ++
Sbjct: 609  VWSGSPA-NYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVI 667

Query: 902  SRDVTF 919
            SR+V F
Sbjct: 668  SRNVVF 673


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  366 bits (940), Expect = 6e-99
 Identities = 174/306 (56%), Positives = 224/306 (73%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y+ QGST+ G+   A SS     + TKLWH+RLGH GE+ +Q L+K+ LL G K   LEF
Sbjct: 387  YFLQGSTVTGSAHVA-SSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEF 445

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHCV GK HR KF  AIH TKG LDY+HSD WGP +  SLGG  +FV+ +DD+SR  WV
Sbjct: 446  CEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWV 505

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + MK+K +    F +WK+ +ENQTG+KIK LRTDNG E+    F + C++ GI RH TVR
Sbjct: 506  YMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVR 565

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV+ERMN+TL+E+ RCMLSNAGLDR+FWAEAV+ A +L+NR P + +  KTP+E
Sbjct: 566  NTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPME 625

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            +WS K   DY +L+ FG TAYYHV+E KL+PRAKK +F+G+  GVKG+R+W    K+ I+
Sbjct: 626  MWSGK-AADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIM 684

Query: 902  SRDVTF 919
            SR+V F
Sbjct: 685  SRNVVF 690


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  366 bits (939), Expect = 7e-99
 Identities = 173/306 (56%), Positives = 223/306 (72%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y+ +G+TI+G V AA S S  +++AT LWHMRLGH  E  L  L+K+GLL G    KL+F
Sbjct: 318  YHLRGTTILGNV-AAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKF 376

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHC+ GK  RVKF T+ H T+GILDYVHSD+WGPA+  S GG  Y +T VDD+SR+VW 
Sbjct: 377  CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWP 436

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+K     +F +WK  VE QT RK+K+LRTDNG E  S  F+  C+  GIVRH+TV 
Sbjct: 437  YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVP 496

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV+ERMNRT++ K RCMLSNA L ++FWAEAV+ A +L+NR PS A+  KTP+E
Sbjct: 497  HTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 556

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            VWS  P  +Y  LR+FG TAY HV+  KL+PR  K +F+G+ +GVKGY+LWC E KK ++
Sbjct: 557  VWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETKKVVI 615

Query: 902  SRDVTF 919
            SR+V F
Sbjct: 616  SRNVVF 621


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  362 bits (929), Expect = 1e-97
 Identities = 172/306 (56%), Positives = 222/306 (72%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y+ QG+TI+G V A  S S  +++AT LWHMRLGH  E  L  L+K+GLL G    KL+F
Sbjct: 409  YHLQGTTILGNV-ATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKF 467

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHC+ GK  RVKF T+ H T+GILDYVHSD+WGPA+  S GG  Y +T VDD+SR+VW 
Sbjct: 468  CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWP 527

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+K     +F +WK  VE QT RK+K+LRTDNG E+ S  F+  C+  GIVRH+TV 
Sbjct: 528  YFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVP 587

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV+ERMNR ++ K RCMLSNAGL ++FWAEAV+ A +L+NR PS A   KTP+E
Sbjct: 588  HTPQQNGVAERMNRIIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYA-NKKTPIE 646

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            VWS  P  +Y  L++FG TAY HV+  KL+PRA K +F+G+ + VKGY+LWC E KK ++
Sbjct: 647  VWSGSPA-NYSDLKVFGCTAYAHVDNGKLEPRAIKCIFLGYPSSVKGYKLWCPETKKVVI 705

Query: 902  SRDVTF 919
            SR+V F
Sbjct: 706  SRNVVF 711


>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
          Length = 1009

 Score =  361 bits (926), Expect = 2e-97
 Identities = 169/306 (55%), Positives = 220/306 (71%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y+ +G+ I+G V AA S S  +++AT LWHMRLGH  E  L  L+K+G+L G    KL F
Sbjct: 230  YHLRGTPILGNV-AAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGMLDGQSIGKLIF 288

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHC+ GK HRVKF T+ H T+GILDYVHSD+WGP    S GG  Y +T +DD+SR+VW 
Sbjct: 289  CEHCIFGKHHRVKFNTSTHTTEGILDYVHSDLWGPTCKTSFGGARYMMTIIDDYSRKVWP 348

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+K     +F +WK  VE QT RK+K+LR DNG E+ S  F+  C+  GIVRH+TV 
Sbjct: 349  YFLKHKYQAFDVFKEWKTMVERQTERKVKILRPDNGMEFCSKIFKSYCKSEGIVRHYTVP 408

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV+ERMNRT++ K RCMLSNAGL ++FWAEAV+ A +L+NR PS A+  KTP+E
Sbjct: 409  HTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 468

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            VWS  P   Y  LR+F  TAY HV+  KL+PRA K +F+G+ +GVKGY+LWC E KK ++
Sbjct: 469  VWSSSPA-KYSDLRVFSCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVI 527

Query: 902  SRDVTF 919
            +R+V F
Sbjct: 528  NRNVVF 533


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  359 bits (922), Expect = 7e-97
 Identities = 168/306 (54%), Positives = 221/306 (72%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y+ QG+TI+G V A  S S  +++AT LWHMRLGH  E  L  L+ +GLL G    KL+F
Sbjct: 226  YHLQGTTILGNV-ATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKF 284

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHC+ GK  RVKF T+ H T+GILDYVHSD+WGPA+  S GG  Y +T V+D+SR+VW 
Sbjct: 285  CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVNDYSRKVWP 344

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+K     +F +WK  VE QT RK+K+LRTDNG E+ S  F+  C+  GI+RH+TV 
Sbjct: 345  YFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVP 404

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV+ERMNRT++ K RCMLSNAGL ++FWAEAV+ A +L+NR P  A+  KTP++
Sbjct: 405  HTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIK 464

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            VWS  P  +Y  L++FG TAY HV+  KL+PR  K +F+G+ +GVKGY+LWC E KK ++
Sbjct: 465  VWSGSPA-NYSDLKVFGCTAYAHVDNGKLEPRTIKCIFLGYPSGVKGYKLWCPETKKVVI 523

Query: 902  SRDVTF 919
            SR V F
Sbjct: 524  SRYVVF 529


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  359 bits (922), Expect = 7e-97
 Identities = 168/306 (54%), Positives = 221/306 (72%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y+ QG+TI+G V A  S S  +++AT LWHMRLGH  E  L  L+ +GLL G    KL+F
Sbjct: 394  YHLQGTTILGNV-ATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKF 452

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHC+ GK  RVKF T+ H T+GILDYVHSD+WGPA+  S GG  Y +T V+D+SR+VW 
Sbjct: 453  CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVNDYSRKVWP 512

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+K     +F +WK  VE QT RK+K+LRTDNG E+ S  F+  C+  GI+RH+TV 
Sbjct: 513  YFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVP 572

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV+ERMNRT++ K RCMLSNAGL ++FWAEAV+ A +L+NR P  A+  KTP++
Sbjct: 573  HTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIK 632

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            VWS  P  +Y  L++FG TAY HV+  KL+PR  K +F+G+ +GVKGY+LWC E KK ++
Sbjct: 633  VWSGSPA-NYSDLKVFGCTAYAHVDNGKLEPRTIKCIFLGYPSGVKGYKLWCPETKKVVI 691

Query: 902  SRDVTF 919
            SR V F
Sbjct: 692  SRYVVF 697


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  359 bits (921), Expect = 9e-97
 Identities = 171/306 (55%), Positives = 219/306 (71%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y+ QG+TIVG V A T S       + LWHMRLGH  E  L  L+K+GLL G    KL+F
Sbjct: 351  YHLQGTTIVGNVAAVTDSLSN----SDLWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKF 406

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHC+ GK  RVKF T+ H T+GILDYVHSD+WGPA+  S GG  Y +T VDD+SR+VW 
Sbjct: 407  CEHCIFGKHKRVKFTTSTHTTEGILDYVHSDLWGPARKRSFGGARYMMTIVDDYSRKVWP 466

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+K +   +F +WK  VE QT RK+KVLRTDNG E+ S  F+  C+  GIVRH+TV 
Sbjct: 467  YFLKHKFEAFLVFKEWKTMVERQTERKVKVLRTDNGMEFCSRQFKSYCRSEGIVRHYTVS 526

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV ERMNRT++ K RCMLSNAGL R+FWAEA + A +L+NR PS A+  KTP+E
Sbjct: 527  HTPQQNGVVERMNRTIISKARCMLSNAGLPRRFWAEAASTACYLINRSPSYAIDKKTPIE 586

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            +WS  P  +Y  L++FG TAY HV+  KL+PRA K +F+G+ +GVK Y+LWC E +K ++
Sbjct: 587  MWSGSPA-NYSDLKVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKAYKLWCPETQKVVI 645

Query: 902  SRDVTF 919
            SR+V F
Sbjct: 646  SRNVIF 651


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score =  358 bits (919), Expect = 2e-96
 Identities = 170/306 (55%), Positives = 223/306 (72%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y+ +G+TI+G V AA S S  +++AT LWHMRLGH  E  L  L+K+GLL G    KL+F
Sbjct: 241  YHLRGTTILGNV-AAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKF 299

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHC+ GK  RVKF T+ H T+GILDYVHSD+WGPA+  S GG  Y +T VDD+SR+VW 
Sbjct: 300  CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRKVWP 359

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+K     +F +WK  VE QT RK+K+LRTDNG E+ S  F+  C+  GIVRH+   
Sbjct: 360  YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHY--- 416

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV+ERMNRT++ K RCMLSNAGL ++FWA AV+   +L+NR PS A+  KTP++
Sbjct: 417  -TPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYLINRSPSYAIDKKTPIK 475

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            VWS  P  +Y  LR+FG TAY HV+  KL+PRA K +F+G+++GVKGY+LWC E KK ++
Sbjct: 476  VWSGFPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGYKLWCPETKKVVI 534

Query: 902  SRDVTF 919
            SR+V F
Sbjct: 535  SRNVVF 540


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score =  358 bits (919), Expect = 2e-96
 Identities = 170/306 (55%), Positives = 223/306 (72%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y+ +G+TI+G V AA S S  +++AT LWHMRLGH  E  L  L+K+GLL G    KL+F
Sbjct: 241  YHLRGTTILGNV-AAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKF 299

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHC+ GK  RVKF T+ H T+GILDYVHSD+WGPA+  S GG  Y +T VDD+SR+VW 
Sbjct: 300  CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRKVWP 359

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+K     +F +WK  VE QT RK+K+LRTDNG E+ S  F+  C+  GIVRH+   
Sbjct: 360  YFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHY--- 416

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV+ERMNRT++ K RCMLSNAGL ++FWA AV+   +L+NR PS A+  KTP++
Sbjct: 417  -TPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYLINRSPSYAIDKKTPIK 475

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            VWS  P  +Y  LR+FG TAY HV+  KL+PRA K +F+G+++GVKGY+LWC E KK ++
Sbjct: 476  VWSGFPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGYKLWCPETKKVVI 534

Query: 902  SRDVTF 919
            SR+V F
Sbjct: 535  SRNVVF 540


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  357 bits (916), Expect = 3e-96
 Identities = 163/306 (53%), Positives = 217/306 (70%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y  +G T+ G+  AA + +  +   T LWHMRLGH     +  L K+ LLKG  + K++F
Sbjct: 400  YVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKF 459

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHC+ GK  RV+F T++H TKG LDYVH+D+WGP+K PSLGG  Y +T +DD+SR+VW 
Sbjct: 460  CEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWP 519

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+KDD    F  WKV +E QT RK+K+LRTDNGGE+ S  F   C++ GIVRH T+ 
Sbjct: 520  YFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIP 579

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV+ERMNRT++ + RCMLS+A ++++FWAEA + A +L+NR PS  L  KTP+E
Sbjct: 580  HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIE 639

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            VWS  P  DY  L++FG TAY HV+  KL+PRA K LF+G+ +GVKGY+LW  E  KT +
Sbjct: 640  VWSGTPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFM 698

Query: 902  SRDVTF 919
            SR V F
Sbjct: 699  SRSVVF 704


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  357 bits (916), Expect = 3e-96
 Identities = 163/306 (53%), Positives = 217/306 (70%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y  +G T+ G+  AA + +  +   T LWHMRLGH     +  L K+ LLKG  + K++F
Sbjct: 400  YVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKF 459

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHC+ GK  RV+F T++H TKG LDYVH+D+WGP+K PSLGG  Y +T +DD+SR+VW 
Sbjct: 460  CEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWP 519

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+KDD    F  WKV +E QT RK+K+LRTDNGGE+ S  F   C++ GIVRH T+ 
Sbjct: 520  YFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIP 579

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV+ERMNRT++ + RCMLS+A ++++FWAEA + A +L+NR PS  L  KTP+E
Sbjct: 580  HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIE 639

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            VWS  P  DY  L++FG TAY HV+  KL+PRA K LF+G+ +GVKGY+LW  E  KT +
Sbjct: 640  VWSGTPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFM 698

Query: 902  SRDVTF 919
            SR V F
Sbjct: 699  SRSVVF 704


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  357 bits (916), Expect = 3e-96
 Identities = 172/302 (56%), Positives = 223/302 (73%), Gaps = 2/302 (0%)
 Frame = +2

Query: 20   TIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEFCEHCVL 199
            T++G+ V  T++ ++D   T+LWH RLGH  EK L  L+KQGLL G +T KL+FCE CV+
Sbjct: 727  TLMGSSVLGTAAVEED-NCTELWHRRLGHMSEKGLSILSKQGLLSGAETGKLKFCETCVM 785

Query: 200  GKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWVFPMKNK 379
            GKQ RVKF    H T G+L+Y+HSD+WGP+   S  G  Y+VTF+DDFSR+VWV+ +K K
Sbjct: 786  GKQRRVKFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAK 845

Query: 380  DDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVRKTPQQN 559
            D+V G F +WK  VE +TG+ +K LRTDNG E+ +  F + C++ GIVRH TVR TPQQN
Sbjct: 846  DEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQN 905

Query: 560  GVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLEVWSEKP 739
            GV+ERMN+TLV++ RCM  +AGL +KFWAEAV  A +LVNR PS+A+  KTP EVWS KP
Sbjct: 906  GVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKP 965

Query: 740  VMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAK--KTIVSRDV 913
              +Y  L+IFG  AY HV++ KL+PRA K +F+G+  GVKGYRLWC E +  K I+SRDV
Sbjct: 966  -SNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDV 1024

Query: 914  TF 919
            TF
Sbjct: 1025 TF 1026


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  357 bits (915), Expect = 5e-96
 Identities = 167/306 (54%), Positives = 217/306 (70%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y  +GST+ G+V AA + +K +   T LWHMRLGH  E  +  L K+ LL G     ++F
Sbjct: 402  YVLRGSTLHGSVTAA-AVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKF 460

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CE CV GK  RVKF T++H TKGILDYVH+D+WGP++ PSLGG  Y +T +DD+SR+VW 
Sbjct: 461  CERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWP 520

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+KDD    F +WKV +E QT +++KVLRTDN GE+ SD F   C++ GIVRH T+ 
Sbjct: 521  YFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHTIP 580

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV+ERMNRT++ K RCMLSNA ++++FWAEA   A +L+NR PS  L  KTP+E
Sbjct: 581  YTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIE 640

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            +WS  P  DY  LR+FG TAY HV+  KL+PRA K LF+G+  GVKGY+LW  E  KT +
Sbjct: 641  IWSGMPA-DYSQLRVFGCTAYAHVDNEKLEPRAIKCLFLGYGLGVKGYKLWNPETNKTFM 699

Query: 902  SRDVTF 919
            SR V F
Sbjct: 700  SRSVVF 705


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  357 bits (915), Expect = 5e-96
 Identities = 163/306 (53%), Positives = 217/306 (70%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y  +G T+ G+  AA + +  +   T LWHMRLGH     +  L K+ LLKG  + K++F
Sbjct: 400  YVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKF 459

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHC+ GK  RV+F T++H TKG LDYVH+D+WGP+K PSLGG  Y +T +DD+SR+VW 
Sbjct: 460  CEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWP 519

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+KDD    F  WKV +E QT RK+K+LRTDNGGE+ S  F   C++ GIVRH T+ 
Sbjct: 520  YFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIP 579

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV+ERMNRT++ + RCMLS+A ++++FWAEA + A +L+NR PS  L  KTP+E
Sbjct: 580  HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIE 639

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            VWS  P  DY  L++FG TAY HV+  KL+PRA K LF+G+ +GVKGY+LW  E  KT +
Sbjct: 640  VWSGMPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFM 698

Query: 902  SRDVTF 919
            SR V F
Sbjct: 699  SRSVVF 704


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  357 bits (915), Expect = 5e-96
 Identities = 170/306 (55%), Positives = 219/306 (71%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y+ +G+TI+G V AA   S  +++AT LWHMRLGH  E  L  L+K+GLL G    KL+F
Sbjct: 381  YHLRGTTILGNV-AAVFDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIRKLKF 439

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHC+ GK  RVKF T+ H T+GILDYVHSD+WGPA   S GG  Y +T VDD+SR+VW 
Sbjct: 440  CEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPAHKTSFGGARYMMTIVDDYSRKVWP 499

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+K      F +WK  VE QT RK+K+LRTDNG E+ S  F+  C+  GIV H+T  
Sbjct: 500  YFLKHKYQAFDGFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVCHYTAP 559

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQN V+ERMNRT++ K RCMLSNAGL ++FWAEAV+ A +L+NR P  A+  KTP+E
Sbjct: 560  HTPQQNDVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIE 619

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            VWS  P  +Y  LR+FG TAY HV+  KL+PRA K +F+G+ +GVKGY+LWC E KK ++
Sbjct: 620  VWSGSPT-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETKKVVI 678

Query: 902  SRDVTF 919
            SR+V F
Sbjct: 679  SRNVVF 684


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1175

 Score =  356 bits (913), Expect = 8e-96
 Identities = 167/306 (54%), Positives = 217/306 (70%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y  +GST+ G V AA  S K +   T +WHMRLGH  E  +  L K+ LL G     ++F
Sbjct: 297  YVLRGSTLHGYVTAAVVS-KDEPSKTNMWHMRLGHMSELGMAELMKRNLLDGCTQGNMKF 355

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHCV GK  RVKF T++H TKGILDYVH+D+WGP++ PSLGG  Y +T +DD+SR+VW 
Sbjct: 356  CEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWP 415

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+KDD    F +WKV ++ QT +++KVLRTDNGG + SD F   C++ GIV H T+ 
Sbjct: 416  YFLKHKDDTFAAFKEWKVMIKRQTEKEVKVLRTDNGGGFCSDAFDDYCRKEGIVMHHTIP 475

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV+ERMNRT++ K RCMLSNA ++++FWAEA   A +L+NR PS +L  KTP+E
Sbjct: 476  YTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAAKTACYLINRSPSISLNKKTPIE 535

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            VWS  P  +Y  LR+FG TAY HVN  KL+PRA K LF+G+ +GVKGY+LW  E  KT +
Sbjct: 536  VWSGMPA-NYSQLRVFGCTAYAHVNNGKLEPRAIKCLFLGYGSGVKGYKLWNPETNKTFM 594

Query: 902  SRDVTF 919
            SR V F
Sbjct: 595  SRSVVF 600


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  355 bits (912), Expect = 1e-95
 Identities = 168/306 (54%), Positives = 217/306 (70%)
 Frame = +2

Query: 2    YYYQGSTIVGTVVAATSSSKKDAEATKLWHMRLGHAGEKSLQTLAKQGLLKGTKTCKLEF 181
            Y  +GST+ G+V AA + SK +   T LWHMRLGH  E  +  L K+ LL G    K++F
Sbjct: 402  YVLRGSTLHGSVTAA-AVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKF 460

Query: 182  CEHCVLGKQHRVKFGTAIHNTKGILDYVHSDVWGPAKTPSLGGRHYFVTFVDDFSRRVWV 361
            CEHCV GK  RVKF T++H TKGILDYVH+D+WGP++   LGG  Y +T +DD+SR+VW 
Sbjct: 461  CEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVWP 520

Query: 362  FPMKNKDDVLGIFLKWKVEVENQTGRKIKVLRTDNGGEYKSDPFQKICQECGIVRHFTVR 541
            + +K+KDD    F +WKV +E QT +++KVLRTDNGGE+ SD F   C++ GIVRH T+ 
Sbjct: 521  YFLKHKDDTFAAFKEWKVRIERQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVRHHTIP 580

Query: 542  KTPQQNGVSERMNRTLVEKVRCMLSNAGLDRKFWAEAVTYAQHLVNRLPSSALGGKTPLE 721
             TPQQNGV+ERMNRT++ K RCMLSNA ++++FWAEA   A +L+NR PS  L  KTP+E
Sbjct: 581  YTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIE 640

Query: 722  VWSEKPVMDYDSLRIFGSTAYYHVNESKLDPRAKKALFMGFNAGVKGYRLWCLEAKKTIV 901
            VWS  P  DY  LR+FG TAY HV+  KL+PRA K LF+G+ +GVK Y+LW  E  KT +
Sbjct: 641  VWSGMPA-DYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKRYKLWNPETNKTFM 699

Query: 902  SRDVTF 919
             R V F
Sbjct: 700  RRSVVF 705