BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00011654
         (2400 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao]        654   0.0  
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-...   644   0.0  
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr...   639   e-180
emb|CBI40014.3| unnamed protein product [Vitis vinifera]              637   e-180
ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-...   634   e-179
gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]     632   e-178
ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-...   629   e-177
ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-...   623   e-175
ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-...   608   e-171
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   604   e-170
ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-...   602   e-169
ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-...   599   e-168
ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trich...   575   e-161
gb|EMJ05079.1| hypothetical protein PRUPE_ppa006657mg [Prunus pe...   559   e-156
ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Caps...   558   e-156
ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutr...   553   e-154
ref|XP_002325455.2| hypothetical protein POPTR_0019s06100g [Popu...   553   e-154
ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [A...   551   e-154
ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-...   550   e-153
emb|CAD20831.2| sigma factor [Spinacia oleracea]                      548   e-153

>gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
          Length = 623

 Score =  654 bits (1686), Expect = 0.0
 Identities = 368/625 (58%), Positives = 417/625 (66%), Gaps = 13/625 (2%)
 Frame = +2

Query: 302  MSCLLPQFKCLPDTFALTFKSHH-HSATQLSKGRDPEYIRTQCIXXXXXXXXXXXXXXXD 478
            MSCLLPQFKC PDTF++ F++HH H       G    +   QC                 
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIFV 60

Query: 479  I---EKLRLPALEANSNSTTDGSWKPTTSTTMTAVLDMEKLNLLPVDANSSLITGSRPWT 649
            +    K  +        STT  S    TSTT TAVLD+EKL L   +A+ + +   RPWT
Sbjct: 61   VLAKHKEHICFRTQCVLSTTSSS----TSTTATAVLDVEKLRLPSFEAHPNSVAVDRPWT 116

Query: 650  YIGATAPSMETNLGAALVTENLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSRGNL 829
            YIGAT P  E +LGA L T+NL+TS                           +M    N 
Sbjct: 117  YIGATGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNY 176

Query: 830  NKSDSKK-TDFASDANTQESIQPYDLAERVSEIGESKVDEIGLSKNHSFEYPFTEPNDIE 1006
             K++ K    FA+D+ T +    +  AER   IG+S  DE  + ++ S +   TE +++E
Sbjct: 177  AKTEMKSGVSFATDSFTSKWAL-FTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELE 235

Query: 1007 PTNXXXXXXQAQLSATITVRSMRQXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXLQD 1186
            PTN      + QLS +I VRS RQ                N                LQD
Sbjct: 236  PTNEELEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQD 295

Query: 1187 VDYFDPLRYXXXXXXXXXXXXXXXXXXXXXXIQDLLKLERLQEELAERCGAEPTFAQWAA 1366
            VDY DPLRY                      IQDLLKLERLQEELAERCG +PTFAQWAA
Sbjct: 296  VDYSDPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAA 355

Query: 1367 AAGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 1546
            AAGVDQKTLR RLNYG+ CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA
Sbjct: 356  AAGVDQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 415

Query: 1547 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYTEHGK 1726
            EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA+KQLY+E+G+
Sbjct: 416  EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 475

Query: 1727 HPNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPS--------EVIADPEG 1882
            HP++EEVAEATGLSMKRL+AV+LTPKAPRSLDQKIGINQNLKPS        EVIADPE 
Sbjct: 476  HPDNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIADPEA 535

Query: 1883 ETAEDLLIKQFMRQDLEKVLDSLNPREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIR 2062
            ETAED+LIKQFMR+DLEKVLDSL+ RE+QVIRWRFG+EDGRMKTLQEIGELMGVSRERIR
Sbjct: 536  ETAEDMLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIR 595

Query: 2063 QIESCAFRKLKNKRRTKHLQQYLIS 2137
            QIESCAFRKLKNK+RTKHLQQYL+S
Sbjct: 596  QIESCAFRKLKNKKRTKHLQQYLLS 620


>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
            sinensis]
          Length = 605

 Score =  644 bits (1661), Expect = 0.0
 Identities = 356/618 (57%), Positives = 411/618 (66%), Gaps = 4/618 (0%)
 Frame = +2

Query: 296  RKMSCLLPQFKCLPDTFALTFKS---HHHSATQLSKGRDPEYIRTQCIXXXXXXXXXXXX 466
            + MSCLLPQFKC PDTF++ F++   H H ++  SK ++P   RT C+            
Sbjct: 22   KNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVL----------- 70

Query: 467  XXXDIEKLRLPALEANSNSTTDGSWKPTTSTTMTAVLDMEKLNLLPVDANSSLITGSRPW 646
                              STT     P+TST MT VLD+EKL L  ++A+S+ +  +R W
Sbjct: 71   ------------------STTS----PSTSTAMTTVLDVEKLRLPSLEAHSNAVAANRQW 108

Query: 647  TYIGATAPSMETNLGAALVTENLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSRGN 826
            TY GA  PS E NLG +L TE L TS                           +MV+  N
Sbjct: 109  TYFGAVGPSTEENLGTSLATETL-TSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHN 167

Query: 827  LNKSDSKKT-DFASDANTQESIQPYDLAERVSEIGESKVDEIGLSKNHSFEYPFTEPNDI 1003
              K  SK     ++D NT    Q  +  ER S IG+S + E    + +S + P  +  D+
Sbjct: 168  SAKPKSKPAISLSADTNTSMWAQLTE-RERASIIGDSVIVEAAPEEEYSEQQPLNKSADL 226

Query: 1004 EPTNXXXXXXQAQLSATITVRSMRQXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXLQ 1183
            EPT+      + Q+S +I VRS RQ                N                +Q
Sbjct: 227  EPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQ 286

Query: 1184 DVDYFDPLRYXXXXXXXXXXXXXXXXXXXXXXIQDLLKLERLQEELAERCGAEPTFAQWA 1363
            +VDY DPLRY                      IQDLLKLE L+E L+ERCG  PTFAQWA
Sbjct: 287  EVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 346

Query: 1364 AAAGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 1543
            AAAGVDQ+ LR+RLNYGILCKDKMI SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG
Sbjct: 347  AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406

Query: 1544 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYTEHG 1723
            AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA+KQLY+E+G
Sbjct: 407  AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 466

Query: 1724 KHPNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVIADPEGETAEDLL 1903
            +HPN+EEVAEATGLSMKRL AV+LTPKAPRSLDQK GINQNLKPSEVIADPE ETAEDLL
Sbjct: 467  RHPNNEEVAEATGLSMKRLHAVLLTPKAPRSLDQKFGINQNLKPSEVIADPEAETAEDLL 526

Query: 1904 IKQFMRQDLEKVLDSLNPREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAF 2083
            IK+FM++DLEKVLD+LNPRE+QV+RWRFGLEDGRMKTLQEIGELMGVSRERIRQIES AF
Sbjct: 527  IKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 586

Query: 2084 RKLKNKRRTKHLQQYLIS 2137
            RKLKNK+RTKHL QY I+
Sbjct: 587  RKLKNKKRTKHLMQYAIT 604


>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
            gi|557539534|gb|ESR50578.1| hypothetical protein
            CICLE_v10030998mg [Citrus clementina]
          Length = 605

 Score =  639 bits (1648), Expect = e-180
 Identities = 355/632 (56%), Positives = 413/632 (65%), Gaps = 4/632 (0%)
 Frame = +2

Query: 254  GTKTNTYVWKRVCRRKMSCLLPQFKCLPDTFALTFKS---HHHSATQLSKGRDPEYIRTQ 424
            G    T +      + MSCLLPQFKC PDTF++ F++   H H ++  SK ++P   RT 
Sbjct: 8    GVVKETQISTSSFNKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTH 67

Query: 425  CIXXXXXXXXXXXXXXXDIEKLRLPALEANSNSTTDGSWKPTTSTTMTAVLDMEKLNLLP 604
            C+                              STT     P+TST MT VLD+EKL L  
Sbjct: 68   CVL-----------------------------STTS----PSTSTAMTTVLDVEKLRLPS 94

Query: 605  VDANSSLITGSRPWTYIGATAPSMETNLGAALVTENLITSXXXXXXXXXXXXXXXXXXXX 784
            ++A+S+ +  +R WTY GA  PS E NLG +L TE L TS                    
Sbjct: 95   LEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAASAEAVALARAAV 153

Query: 785  XXXXXXXMMVSRGNLNKSDSKKT-DFASDANTQESIQPYDLAERVSEIGESKVDEIGLSK 961
                   +MV+  N  K  SK     ++D +T    Q  +  ER S IG+S + E    +
Sbjct: 154  KVAKDAALMVNHHNSAKPKSKPAISLSADTSTSMWAQLTE-RERASIIGDSVIVEAAPEE 212

Query: 962  NHSFEYPFTEPNDIEPTNXXXXXXQAQLSATITVRSMRQXXXXXXXXXXXXXXXXNXXXX 1141
             +S + P  +  D+EPT+      + Q+S +I VRS RQ                N    
Sbjct: 213  EYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSV 272

Query: 1142 XXXXXXXXXXXXLQDVDYFDPLRYXXXXXXXXXXXXXXXXXXXXXXIQDLLKLERLQEEL 1321
                        +Q+VDY DPLRY                      IQDLLKLE L+E L
Sbjct: 273  KSGSTTRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 332

Query: 1322 AERCGAEPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNL 1501
            +ERCG  PTFAQWAAAAGVDQ+ LR+RLNYGILCKDKMI SNIRLVISIAKNYQGAGMNL
Sbjct: 333  SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392

Query: 1502 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 1681
            QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY
Sbjct: 393  QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 452

Query: 1682 RVKEAKKQLYTEHGKHPNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSE 1861
            RVKEA+KQLY+E+G+HPN+EEVA+ATGLSMKRL AV+L PKAPRSLDQK GINQNLKPSE
Sbjct: 453  RVKEARKQLYSENGRHPNNEEVAKATGLSMKRLHAVLLAPKAPRSLDQKFGINQNLKPSE 512

Query: 1862 VIADPEGETAEDLLIKQFMRQDLEKVLDSLNPREKQVIRWRFGLEDGRMKTLQEIGELMG 2041
            VIADPE ETAEDLLIK+FM++DLEKVLD+LNPRE+QV+RWRFGLEDGRMKTLQEIGELMG
Sbjct: 513  VIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMG 572

Query: 2042 VSRERIRQIESCAFRKLKNKRRTKHLQQYLIS 2137
            VSRERIRQIES AFRKLKNK+RTKHL QY I+
Sbjct: 573  VSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604


>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
          Length = 575

 Score =  637 bits (1642), Expect = e-180
 Identities = 354/613 (57%), Positives = 404/613 (65%), Gaps = 1/613 (0%)
 Frame = +2

Query: 302  MSCLLPQFKCLPDTFALTFKSHHHSATQLSKGRDPEYIRTQCIXXXXXXXXXXXXXXXDI 481
            MSCLLPQFKC PDTF+   K H      LSK R+  Y R QC                  
Sbjct: 1    MSCLLPQFKCPPDTFSTHPKLHI-----LSKNREAIYFRVQCAL---------------- 39

Query: 482  EKLRLPALEANSNSTTDGSWKPTTSTTMTAVLDMEKLNLLPVDANSSLITGSRPWTYIGA 661
                         STT     P  ST+ TAVLD+EKL L  ++++S+ +   RPWTYIG 
Sbjct: 40   -------------STTS----PPLSTSTTAVLDIEKLRLPSLESHSNSVAAHRPWTYIGV 82

Query: 662  TAPSMETNLGAALVTENLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSRGNLNKSD 841
              P  E N  A L  E L+TS                            +V + N  KS+
Sbjct: 83   VGPPTEANFEATLARETLLTSEEAVIAAAAAEAVALAKAAVKVAKDAARLVGKNNSAKSE 142

Query: 842  SKKTDFASDANTQESIQ-PYDLAERVSEIGESKVDEIGLSKNHSFEYPFTEPNDIEPTNX 1018
            +K   F S  +T +  +  +   ER+  +G+S   E G+   +S +    + +D+EPT  
Sbjct: 143  TKPASFLSGDDTSQFRRIQFTETERIGILGDSVGAETGMVDYNSLQDVTEDSDDLEPTLE 202

Query: 1019 XXXXXQAQLSATITVRSMRQXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXLQDVDYF 1198
                 +A+ S +I VRS RQ                                 LQ+VDY 
Sbjct: 203  ELELLEAEFSKSIVVRSNRQVERKARRARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYS 262

Query: 1199 DPLRYXXXXXXXXXXXXXXXXXXXXXXIQDLLKLERLQEELAERCGAEPTFAQWAAAAGV 1378
            DPLRY                      IQDLLKLE+LQE+L ER G +PTFAQWAAAAGV
Sbjct: 263  DPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGV 322

Query: 1379 DQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 1558
            DQKTLR+R NYGI CKDKMIKSNIRLVISIAKNYQGAGMN+QDLVQEGCRGLVRGAEKFD
Sbjct: 323  DQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFD 382

Query: 1559 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYTEHGKHPND 1738
            ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA+KQLY+E+G+HPN+
Sbjct: 383  ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 442

Query: 1739 EEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVIADPEGETAEDLLIKQFM 1918
            EEVAEATGLSMKRL+AV+LTPKAPRSLDQKIGINQNLKPSEVIADP+ ETAE+LLIKQFM
Sbjct: 443  EEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFM 502

Query: 1919 RQDLEKVLDSLNPREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN 2098
            R+DLEKVL+SLNPREKQVIRWR+GLEDGR KTLQEIGELMGVSRERIRQIESCAFRKLKN
Sbjct: 503  REDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKN 562

Query: 2099 KRRTKHLQQYLIS 2137
            KRRTKHLQQYL+S
Sbjct: 563  KRRTKHLQQYLVS 575


>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 578

 Score =  634 bits (1634), Expect = e-179
 Identities = 352/613 (57%), Positives = 403/613 (65%), Gaps = 1/613 (0%)
 Frame = +2

Query: 302  MSCLLPQFKCLPDTFALTFKSHHHSATQLSKGRDPEYIRTQCIXXXXXXXXXXXXXXXDI 481
            MSCLLPQFKC PDTF+   K H     +  K R+  Y R QC                  
Sbjct: 1    MSCLLPQFKCPPDTFSTHPKLH--ILCKSPKNREAIYFRVQCAL---------------- 42

Query: 482  EKLRLPALEANSNSTTDGSWKPTTSTTMTAVLDMEKLNLLPVDANSSLITGSRPWTYIGA 661
                         STT     P  ST+ TAVLD+EKL L  ++++S+ +   RPWTYIG 
Sbjct: 43   -------------STTS----PPLSTSTTAVLDIEKLRLPSLESHSNSVAAHRPWTYIGV 85

Query: 662  TAPSMETNLGAALVTENLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSRGNLNKSD 841
              P  E N  A L  E L+TS                            +V + N  KS+
Sbjct: 86   VGPPTEANFEATLARETLLTSEEAVIAAAAAEAVALAKAAVKVAKDAARLVGKNNSAKSE 145

Query: 842  SKKTDFASDANTQESIQ-PYDLAERVSEIGESKVDEIGLSKNHSFEYPFTEPNDIEPTNX 1018
            +K   F S  +T +  +  +   ER+  +G+S   E G+   +S +    + +D+EPT  
Sbjct: 146  TKPASFLSGDDTSQFRRIQFTETERIGILGDSVGAETGMVDYNSLQDVTEDSDDLEPTLE 205

Query: 1019 XXXXXQAQLSATITVRSMRQXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXLQDVDYF 1198
                 +A+ S +I VRS RQ                                 LQ+VDY 
Sbjct: 206  ELELLEAEFSKSIVVRSNRQVERKARRARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYS 265

Query: 1199 DPLRYXXXXXXXXXXXXXXXXXXXXXXIQDLLKLERLQEELAERCGAEPTFAQWAAAAGV 1378
            DPLRY                      IQDLLKLE+LQE+L ER G +PTFAQWAAAAGV
Sbjct: 266  DPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGV 325

Query: 1379 DQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 1558
            DQKTLR+R NYGI CKDKMIKSNIRLVISIAKNYQGAGMN+QDLVQEGCRGLVRGAEKFD
Sbjct: 326  DQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFD 385

Query: 1559 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYTEHGKHPND 1738
            ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA+KQLY+E+G+HPN+
Sbjct: 386  ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 445

Query: 1739 EEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVIADPEGETAEDLLIKQFM 1918
            EEVAEATGLSMKRL+AV+LTPKAPRSLDQKIGINQNLKPSEVIADP+ ETAE+LLIKQFM
Sbjct: 446  EEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFM 505

Query: 1919 RQDLEKVLDSLNPREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN 2098
            R+DLEKVL+SLNPREKQVIRWR+GLEDGR KTLQEIGELMGVSRERIRQIESCAFRKLKN
Sbjct: 506  REDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKN 565

Query: 2099 KRRTKHLQQYLIS 2137
            KRRTKHLQQYL+S
Sbjct: 566  KRRTKHLQQYLVS 578


>gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 574

 Score =  632 bits (1630), Expect = e-178
 Identities = 353/616 (57%), Positives = 401/616 (65%), Gaps = 4/616 (0%)
 Frame = +2

Query: 302  MSCLLPQFKCLPDTFALTFKSHHHSA----TQLSKGRDPEYIRTQCIXXXXXXXXXXXXX 469
            MSCLLPQF C PDTF+  F    HS     + L K RD   +  QC+             
Sbjct: 1    MSCLLPQFNCKPDTFSAQFNFRTHSLPTPNSHLPKARDINSL-AQCVL------------ 47

Query: 470  XXDIEKLRLPALEANSNSTTDGSWKPTTSTTMTAVLDMEKLNLLPVDANSSLITGSRPWT 649
                             STT     P+TS   T VL +EKL    +DANS  +T +RPWT
Sbjct: 48   -----------------STTS----PSTSVGATYVLSVEKLRFPSLDANSESVTSNRPWT 86

Query: 650  YIGATAPSMETNLGAALVTENLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSRGNL 829
            Y GAT P +E N  A L TE L+TS                           ++V     
Sbjct: 87   YTGATGPPVEANFEATLATETLLTSEEAVIAAAAAEAVTLAKAAVKVAKDAALLVRPSTR 146

Query: 830  NKSDSKKTDFASDANTQESIQPYDLAERVSEIGESKVDEIGLSKNHSFEYPFTEPNDIEP 1009
             +S S  +  A +  T         A+  S + +S   E+ L ++H  +    E ND++P
Sbjct: 147  AESISLVSSEARNIKT---------AQAASRVRDSLRAEMALIEDHPPKDAAKESNDLQP 197

Query: 1010 TNXXXXXXQAQLSATITVRSMRQXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXLQDV 1189
            TN      Q QLS +I VRS RQ                N                +QDV
Sbjct: 198  TNEELRILQEQLSKSIAVRSRRQSERKAKRDRAAEKAAANVVAVKSGSNSRKKRASVQDV 257

Query: 1190 DYFDPLRYXXXXXXXXXXXXXXXXXXXXXXIQDLLKLERLQEELAERCGAEPTFAQWAAA 1369
            D+ DPLRY                      IQDLLKLE+LQEELAERCG  PTFAQWAAA
Sbjct: 258  DHSDPLRYLRSTTSTSRLLTATEEIELSEGIQDLLKLEKLQEELAERCGGPPTFAQWAAA 317

Query: 1370 AGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 1549
            AGVDQKTLR+R+NYGILCKDKMIKSN+RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE
Sbjct: 318  AGVDQKTLRRRINYGILCKDKMIKSNVRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 377

Query: 1550 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYTEHGKH 1729
            KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA+KQLY+E+G+ 
Sbjct: 378  KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQ 437

Query: 1730 PNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVIADPEGETAEDLLIK 1909
            PNDEEVAEATGLSMKRL+AV+LTPKAPRSL+QKIGINQNLKPSE+IADP+ ET ED+L +
Sbjct: 438  PNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEIIADPDAETLEDVLTR 497

Query: 1910 QFMRQDLEKVLDSLNPREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRK 2089
            QFM+QDL+KVLDSLN REKQVIRWRFG++DGRMKTLQEIGELMGVSRERIRQIESCAFRK
Sbjct: 498  QFMKQDLDKVLDSLNQREKQVIRWRFGMDDGRMKTLQEIGELMGVSRERIRQIESCAFRK 557

Query: 2090 LKNKRRTKHLQQYLIS 2137
            LKNK+RTKHLQQYLIS
Sbjct: 558  LKNKKRTKHLQQYLIS 573


>ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum tuberosum]
          Length = 613

 Score =  629 bits (1621), Expect = e-177
 Identities = 354/617 (57%), Positives = 402/617 (65%), Gaps = 7/617 (1%)
 Frame = +2

Query: 302  MSCLLPQFKCLPDTFALTFKSHHHSATQLSKGRDPEYIRTQCIXXXXXXXXXXXXXXX-D 478
            MS LLPQF  LPD F +  K+   +  QLSK RD  ++RTQCI                 
Sbjct: 1    MSYLLPQFLSLPDAFVICAKTQQQTTIQLSKSRDHIHLRTQCILSTTSAVTSTATSTVLG 60

Query: 479  IEKLRLPALEANSNSTT-DGSWKPTTSTTMTAVLDMEKLNLLPVDANSSLITGSRPWTYI 655
            IEKL+LP++E  SNS   + SWK  ++ T T V D++KL L   +AN   +   RPWTY 
Sbjct: 61   IEKLQLPSIEILSNSVAAERSWKSPSAAT-TTVPDIQKLKLPSFEANPDSVAPDRPWTYT 119

Query: 656  GATAPSMETNLGAALVTENLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSRGNLNK 835
            GA  P  E N       EN + S                           M+V   NLN 
Sbjct: 120  GAVGPPAEANTKP----ENSLASEEAIVAAAAAEAVALAKAALKGAQDAVMLVGYNNLND 175

Query: 836  SDSKKTDFASDANTQ--ESI---QPYDLAERVSEIGESKVDEIGLSKNHSFEYPFTEPND 1000
            SD+      S+A T   ES+   QP +   RV    E    E+  + +  F    T+ +D
Sbjct: 176  SDNVGRGTLSEARTAPFESVHLAQPGE-TRRVGVCAELNGSEMKWTGSSLFRETLTDSDD 234

Query: 1001 IEPTNXXXXXXQAQLSATITVRSMRQXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXL 1180
            +EP+       Q+QLS  I V+S RQ                N                +
Sbjct: 235  LEPSPEELEILQSQLSNVIAVKSNRQTERKAKRAKSVEKAAANVVTVKSGSTSRKKRASV 294

Query: 1181 QDVDYFDPLRYXXXXXXXXXXXXXXXXXXXXXXIQDLLKLERLQEELAERCGAEPTFAQW 1360
            QDVDY DPLRY                      IQDLLKLERLQ EL ERCG +PTF QW
Sbjct: 295  QDVDYSDPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQW 354

Query: 1361 AAAAGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 1540
            AAAAGVDQ TLRKRLNYGILCKDKMIKSN+RLVISIAKNYQG GMNLQDLVQEGCRGLVR
Sbjct: 355  AAAAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVR 414

Query: 1541 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYTEH 1720
            GAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEA+KQL TE+
Sbjct: 415  GAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLLTEN 474

Query: 1721 GKHPNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVIADPEGETAEDL 1900
            G+HPND EVAEA GLSMKRL+AVMLTPKAPRSLDQKIG N++LKPSEV+ADPE ET+E++
Sbjct: 475  GRHPNDAEVAEAAGLSMKRLAAVMLTPKAPRSLDQKIGFNESLKPSEVLADPEAETSEEI 534

Query: 1901 LIKQFMRQDLEKVLDSLNPREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCA 2080
            L KQFMRQDLEKVLD+LNPREKQV+RWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCA
Sbjct: 535  LTKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCA 594

Query: 2081 FRKLKNKRRTKHLQQYL 2131
            FRKLKNK+RTK LQQY+
Sbjct: 595  FRKLKNKKRTKFLQQYI 611


>ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum
            lycopersicum]
          Length = 613

 Score =  623 bits (1606), Expect = e-175
 Identities = 349/616 (56%), Positives = 400/616 (64%), Gaps = 6/616 (0%)
 Frame = +2

Query: 302  MSCLLPQFKCLPDTFALTFKSHHHSATQLSKGRDPEYIRTQCIXXXXXXXXXXXXXXX-D 478
            MS LLPQF  LPD F +  K+   +  QLSK RD  ++RTQCI                 
Sbjct: 1    MSYLLPQFLSLPDAFVICAKTQQQTTIQLSKSRDSIHLRTQCILSTTSAVTSTATSTVLG 60

Query: 479  IEKLRLPALEANSNSTT-DGSWKPTTSTTMTAVLDMEKLNLLPVDANSSLITGSRPWTYI 655
            IEKL+LP++E  SNS   + SWK  ++ T T V  ++KL L   +AN   +   RPWTY 
Sbjct: 61   IEKLQLPSIEILSNSVAAERSWKSPSAAT-TTVPGIQKLKLPSFEANPDSVAPDRPWTYT 119

Query: 656  GATAPSMETNLGAALVTENLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSRGNLNK 835
            GA  P  E N       E+ + S                           M+V   NL  
Sbjct: 120  GAVGPPAEANTKP----EDSLASEEAIVAAAAAEAVALAKAALKGAQDAVMLVGYNNLKD 175

Query: 836  SDSKKTDFASDANTQ--ESIQPYDLAER--VSEIGESKVDEIGLSKNHSFEYPFTEPNDI 1003
            SD+      S+A T   ES+      E   V    E    E+  + +  F    T+ +D+
Sbjct: 176  SDNVGRGTLSEARTAPFESVHLAQPGETRGVGVCAELNGSEMKWTGSSLFRDTLTDSDDL 235

Query: 1004 EPTNXXXXXXQAQLSATITVRSMRQXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXLQ 1183
            EP++      Q+QLS  I V+S RQ                N                +Q
Sbjct: 236  EPSHEELEILQSQLSNVIAVKSNRQTERKARRAKAVERAAANVVSVKSGSTSRKKRASVQ 295

Query: 1184 DVDYFDPLRYXXXXXXXXXXXXXXXXXXXXXXIQDLLKLERLQEELAERCGAEPTFAQWA 1363
            DVDY DPLRY                      IQDLLKLERLQ EL ERCG +PTF QWA
Sbjct: 296  DVDYSDPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWA 355

Query: 1364 AAAGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 1543
            AAAGVDQ TLRKRLNYGILCKDKMIKSN+RLVISIAKNYQG GMNLQDLVQEGCRGLVRG
Sbjct: 356  AAAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRG 415

Query: 1544 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYTEHG 1723
            AEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA+KQL TE+G
Sbjct: 416  AEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLTENG 475

Query: 1724 KHPNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVIADPEGETAEDLL 1903
            +HPND EVAEATGLSMKRL+AVMLTPKAPRSLDQK+G N++LKPSEV+ADP+ ET+E++L
Sbjct: 476  RHPNDAEVAEATGLSMKRLAAVMLTPKAPRSLDQKVGFNESLKPSEVLADPDAETSEEIL 535

Query: 1904 IKQFMRQDLEKVLDSLNPREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAF 2083
             KQFMRQDLEKVLD+LNPREKQV+RWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAF
Sbjct: 536  TKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAF 595

Query: 2084 RKLKNKRRTKHLQQYL 2131
            RKLKNK+RTK LQQY+
Sbjct: 596  RKLKNKKRTKFLQQYI 611


>ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-like [Fragaria vesca
            subsp. vesca]
          Length = 616

 Score =  608 bits (1568), Expect = e-171
 Identities = 322/530 (60%), Positives = 369/530 (69%)
 Frame = +2

Query: 548  TTSTTMTAVLDMEKLNLLPVDANSSLITGSRPWTYIGATAPSMETNLGAALVTENLITSX 727
            +TST    +LDME+ +L  +  NS  +  +RPWTY GA  P  E N GAAL TE L+TS 
Sbjct: 87   STSTPTATLLDMEEFSLPSLTVNSDSLIVNRPWTYTGAIGPPTEANYGAALATETLLTSE 146

Query: 728  XXXXXXXXXXXXXXXXXXXXXXXXXXMMVSRGNLNKSDSKKTDFASDANTQESIQPYDLA 907
                                      ++VS  +  K ++        +    +   +   
Sbjct: 147  EAVIAAAAAEAVTLAKAALKVAKDVALLVSNNHYAKVENSSPVSCGTSAFHINWAQHLET 206

Query: 908  ERVSEIGESKVDEIGLSKNHSFEYPFTEPNDIEPTNXXXXXXQAQLSATITVRSMRQXXX 1087
            E    IG+S   E  L ++H  +    E  ++EP N      Q QLS  I  RS RQ   
Sbjct: 207  EPTLRIGDSMASETALVEDHFLQIAINESENVEPANEEFELLQEQLSNGIAARSSRQTER 266

Query: 1088 XXXXXXXXXXXXXNXXXXXXXXXXXXXXXXLQDVDYFDPLRYXXXXXXXXXXXXXXXXXX 1267
                         +                LQDVD+ DPLRY                  
Sbjct: 267  KARRTRAAEKAAASIVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIE 326

Query: 1268 XXXXIQDLLKLERLQEELAERCGAEPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSN 1447
                IQ+LLKLE+LQE+LA+RCG +PTFAQWAAAAGVDQKTLRKR+NYGI+CKDKMIKSN
Sbjct: 327  LSEGIQELLKLEKLQEDLAQRCGTQPTFAQWAAAAGVDQKTLRKRVNYGIMCKDKMIKSN 386

Query: 1448 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 1627
            IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL
Sbjct: 387  IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 446

Query: 1628 SDQSRTIRLPFHMVEATYRVKEAKKQLYTEHGKHPNDEEVAEATGLSMKRLSAVMLTPKA 1807
            SDQSRTIRLPFHMVEATYRV+EAKKQLY+ +G+HPNDEEVAEATGLSMKRL+AV+LTPKA
Sbjct: 447  SDQSRTIRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKA 506

Query: 1808 PRSLDQKIGINQNLKPSEVIADPEGETAEDLLIKQFMRQDLEKVLDSLNPREKQVIRWRF 1987
            PRSL+QKIGINQNLKPS+VIADP+ ETAEDLL+K+FM+QDLEKVLDSLNPREKQVIRWRF
Sbjct: 507  PRSLEQKIGINQNLKPSDVIADPDAETAEDLLMKKFMKQDLEKVLDSLNPREKQVIRWRF 566

Query: 1988 GLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLIS 2137
            G+EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNK+RTKHLQQY++S
Sbjct: 567  GMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLS 616


>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
            gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
            rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  604 bits (1557), Expect = e-170
 Identities = 343/616 (55%), Positives = 395/616 (64%), Gaps = 4/616 (0%)
 Frame = +2

Query: 302  MSCLLPQFKCLPDTFALTFKS---HHHSATQLSKGRDPEYIRTQCIXXXXXXXXXXXXXX 472
            MSCLLPQFKC PDTF++ F++   H  + TQ +K R+P Y R QCI              
Sbjct: 2    MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCIL------------- 48

Query: 473  XDIEKLRLPALEANSNSTTDGSWKPTTSTTMTAVLDMEKLNLLPVDANSSLITGSRPWTY 652
                                     T+ +T TAVLD+EKL L   +A S  I  + PWTY
Sbjct: 49   -----------------------STTSPSTSTAVLDLEKLRLPSFEAPSDSIAPNSPWTY 85

Query: 653  IGATAPSMETNLGAALVTENLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSRGNLN 832
                        G+ L TE LITS                           ++V      
Sbjct: 86   ---------ATFGSTLATETLITSDEAVIAAAAAEAVALARAAVKVAKDAALLVKNFPSA 136

Query: 833  KSDSKKTDFASDANTQESIQP-YDLAERVSEIGESKVDEIGLSKNHSFEYPFTEPNDIEP 1009
            +++SK T   S +    S  P +   ER   IG+S   E G  +  S +    E + +E 
Sbjct: 137  ETESKLT---SPSTIDASRWPQFTETERARIIGDSVATETGPREESSMQSSIKESDYLEL 193

Query: 1010 TNXXXXXXQAQLSATITVRSMRQXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXLQDV 1189
            T+      Q QLS  I VRS RQ                +                LQ+V
Sbjct: 194  THKELELLQKQLSEGIAVRSRRQTERKARRARAVEKAASSVVSVKPGSTSKKKRGSLQEV 253

Query: 1190 DYFDPLRYXXXXXXXXXXXXXXXXXXXXXXIQDLLKLERLQEELAERCGAEPTFAQWAAA 1369
            DY DPLRY                      IQDLLKLERLQEELAER G +PTFAQWAAA
Sbjct: 254  DYSDPLRYLRGTTSTSRLLTASEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAAA 313

Query: 1370 AGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 1549
            AGVDQ+TLRKR+N+G +CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE
Sbjct: 314  AGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 373

Query: 1550 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYTEHGKH 1729
            KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA+KQLY+E+G+H
Sbjct: 374  KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 433

Query: 1730 PNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVIADPEGETAEDLLIK 1909
            P+DEEVAEA GLSMKRLSAV+LTPKAPRSLDQKIG+N +LKPSEVIADPE ETAE+LL+K
Sbjct: 434  PDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIGMNMDLKPSEVIADPEAETAEELLMK 493

Query: 1910 QFMRQDLEKVLDSLNPREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRK 2089
            QFM+QDLEKVL++LNPRE QV+RWRFGLEDGRMKTLQEIGE+MGVSRERIRQIES AFRK
Sbjct: 494  QFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFRK 553

Query: 2090 LKNKRRTKHLQQYLIS 2137
            LKNK+RTK L+QYL++
Sbjct: 554  LKNKKRTKQLKQYLLA 569


>ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X2 [Citrus
            sinensis]
          Length = 525

 Score =  602 bits (1552), Expect = e-169
 Identities = 326/526 (61%), Positives = 370/526 (70%), Gaps = 1/526 (0%)
 Frame = +2

Query: 563  MTAVLDMEKLNLLPVDANSSLITGSRPWTYIGATAPSMETNLGAALVTENLITSXXXXXX 742
            MT VLD+EKL L  ++A+S+ +  +R WTY GA  PS E NLG +L TE L TS      
Sbjct: 1    MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIA 59

Query: 743  XXXXXXXXXXXXXXXXXXXXXMMVSRGNLNKSDSKKT-DFASDANTQESIQPYDLAERVS 919
                                 +MV+  N  K  SK     ++D NT    Q  +  ER S
Sbjct: 60   AASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMWAQLTE-RERAS 118

Query: 920  EIGESKVDEIGLSKNHSFEYPFTEPNDIEPTNXXXXXXQAQLSATITVRSMRQXXXXXXX 1099
             IG+S + E    + +S + P  +  D+EPT+      + Q+S +I VRS RQ       
Sbjct: 119  IIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARR 178

Query: 1100 XXXXXXXXXNXXXXXXXXXXXXXXXXLQDVDYFDPLRYXXXXXXXXXXXXXXXXXXXXXX 1279
                     N                +Q+VDY DPLRY                      
Sbjct: 179  TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 238

Query: 1280 IQDLLKLERLQEELAERCGAEPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRLV 1459
            IQDLLKLE L+E L+ERCG  PTFAQWAAAAGVDQ+ LR+RLNYGILCKDKMI SNIRLV
Sbjct: 239  IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 298

Query: 1460 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 1639
            ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS
Sbjct: 299  ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 358

Query: 1640 RTIRLPFHMVEATYRVKEAKKQLYTEHGKHPNDEEVAEATGLSMKRLSAVMLTPKAPRSL 1819
            RTIRLPFHMVEATYRVKEA+KQLY+E+G+HPN+EEVAEATGLSMKRL AV+LTPKAPRSL
Sbjct: 359  RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSL 418

Query: 1820 DQKIGINQNLKPSEVIADPEGETAEDLLIKQFMRQDLEKVLDSLNPREKQVIRWRFGLED 1999
            DQK GINQNLKPSEVIADPE ETAEDLLIK+FM++DLEKVLD+LNPRE+QV+RWRFGLED
Sbjct: 419  DQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLED 478

Query: 2000 GRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLIS 2137
            GRMKTLQEIGELMGVSRERIRQIES AFRKLKNK+RTKHL QY I+
Sbjct: 479  GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 524


>ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
            gi|449473951|ref|XP_004154029.1| PREDICTED: RNA
            polymerase sigma factor sigB-like [Cucumis sativus]
          Length = 580

 Score =  599 bits (1544), Expect = e-168
 Identities = 345/626 (55%), Positives = 401/626 (64%), Gaps = 14/626 (2%)
 Frame = +2

Query: 302  MSCLLPQFKCLPDTFALTFK-----SHHHSA-----TQLSKGRDPEYIRTQCIXXXXXXX 451
            MSCLLPQFKC P+TF++ FK     SHHHS      +  +K RDP  +RTQCI       
Sbjct: 1    MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCI------- 53

Query: 452  XXXXXXXXDIEKLRLPALEANSNSTTDGSWKPTTSTTMTAVLDMEKLNLLPVDANSSLIT 631
                             L A S         P TST     LD+++L L P D N+  ++
Sbjct: 54   -----------------LSAAS---------PPTSTGTATTLDVDRLKLPPFDTNTDSVS 87

Query: 632  GSRPWTYIGATAPSMETNLGAALVTENLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXMM 811
              R  +Y+GA    +E++L + L+T    +                            + 
Sbjct: 88   VERLRSYLGA----VESSLASTLLTSEEASIAAAAAEAVTLAKAAVKVARDAALLANNIN 143

Query: 812  VSRGNLNKSDSKKTDFASDANTQESIQPYDLAERVSEIGESKVDEIGLSKN----HSFEY 979
             SR       S K D       Q     +  +ER   IGE     +G++K      + E 
Sbjct: 144  SSRAGTKSQSSPKPDALHFKWAQ-----FMESERADIIGEP----VGVNKRPMEGDALEP 194

Query: 980  PFTEPNDIEPTNXXXXXXQAQLSATITVRSMRQXXXXXXXXXXXXXXXXNXXXXXXXXXX 1159
              TE +D+EPT+      Q +LS +ITV+S RQ                +          
Sbjct: 195  STTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVLSFKSGSSS 254

Query: 1160 XXXXXXLQDVDYFDPLRYXXXXXXXXXXXXXXXXXXXXXXIQDLLKLERLQEELAERCGA 1339
                  +Q+VDY DPLRY                      IQDLLKLERLQEEL ER G 
Sbjct: 255  RKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDLLKLERLQEELGERYGN 314

Query: 1340 EPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQE 1519
            EPTFAQWAAAAGV+Q+TLRKRLNYG LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQE
Sbjct: 315  EPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQE 374

Query: 1520 GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAK 1699
            GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEATYRVKEA+
Sbjct: 375  GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEAR 434

Query: 1700 KQLYTEHGKHPNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVIADPE 1879
            KQL  E+G+HP+D+E+AEA GLSMKRL+AV++TPKAPRSL+QKIGINQNLKPSEVI+DPE
Sbjct: 435  KQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPE 494

Query: 1880 GETAEDLLIKQFMRQDLEKVLDSLNPREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERI 2059
             ET ED+LIKQFM+QDLEKVLDSLNPREKQVIRWRFG+EDGRMKTLQEIGE+MGVSRERI
Sbjct: 495  AETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERI 554

Query: 2060 RQIESCAFRKLKNKRRTKHLQQYLIS 2137
            RQIESCAFRKLKNK+RTKHLQQY++S
Sbjct: 555  RQIESCAFRKLKNKKRTKHLQQYVMS 580


>ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trichocarpa]
            gi|550325142|gb|EEE95669.2| SIGMA FACTOR B family protein
            [Populus trichocarpa]
          Length = 567

 Score =  575 bits (1481), Expect = e-161
 Identities = 320/612 (52%), Positives = 381/612 (62%)
 Frame = +2

Query: 302  MSCLLPQFKCLPDTFALTFKSHHHSATQLSKGRDPEYIRTQCIXXXXXXXXXXXXXXXDI 481
            MSCLLPQFKC PDTF++ F++  H  T  ++         QC+                 
Sbjct: 1    MSCLLPQFKCQPDTFSVHFRNLQHHGTNHTQ-------LPQCVL---------------- 37

Query: 482  EKLRLPALEANSNSTTDGSWKPTTSTTMTAVLDMEKLNLLPVDANSSLITGSRPWTYIGA 661
                                  ++++  TAVLD+EKL L  ++ +S  I+ +RPWTYIG 
Sbjct: 38   ----------------------SSASPSTAVLDLEKLRLPSLEPHSDSISANRPWTYIGG 75

Query: 662  TAPSMETNLGAALVTENLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSRGNLNKSD 841
              P  +   G +L  E LI +                            M    +  K +
Sbjct: 76   IGPQKKPPFGTSLAAETLIANDEAVIAAAAAEAVALARAAVKVAKDAAEMAKNYSFMKKE 135

Query: 842  SKKTDFASDANTQESIQPYDLAERVSEIGESKVDEIGLSKNHSFEYPFTEPNDIEPTNXX 1021
            +K    ++  +           ER   IG+S   E  L + +S +YP  E + +EPT   
Sbjct: 136  TKIPIASTTDSFSSMWSLLTEKERADIIGDSVSAETRLREEYSVQYPTEEYDCLEPTQEE 195

Query: 1022 XXXXQAQLSATITVRSMRQXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXLQDVDYFD 1201
                Q QLS  I VRS RQ                N                LQ+VD  D
Sbjct: 196  LALLQKQLSEGIAVRSKRQTERKARRARAAEKAAANVVSVKSGSTSKKKRVPLQEVDQSD 255

Query: 1202 PLRYXXXXXXXXXXXXXXXXXXXXXXIQDLLKLERLQEELAERCGAEPTFAQWAAAAGVD 1381
            PLR+                      IQDLLKLER++EEL ER G EP+FAQWAAAAGVD
Sbjct: 256  PLRFFRGASSSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGEPSFAQWAAAAGVD 315

Query: 1382 QKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 1561
            Q TLRKRLNYGILCKDKMIKSN+RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDA
Sbjct: 316  QLTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGTGMNLQDLVQEGCRGLVRGAEKFDA 375

Query: 1562 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYTEHGKHPNDE 1741
            SKGFKFSTYAHWWIKQAVRKSLSD+SRTIRLPFHMV+ATYRVKEA+KQLY+E+G+HP+D+
Sbjct: 376  SKGFKFSTYAHWWIKQAVRKSLSDRSRTIRLPFHMVDATYRVKEARKQLYSENGRHPDDK 435

Query: 1742 EVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVIADPEGETAEDLLIKQFMR 1921
            EVAEA GLSMKRLSAV+LTPKAPRSLDQK+G N +LK SEV ADPE ETAEDLL+K+FM+
Sbjct: 436  EVAEAAGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMK 495

Query: 1922 QDLEKVLDSLNPREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNK 2101
            +DL KVL SL+PRE QV+RWRFG+EDGRMKTLQEIGELMGVSRER+RQIE  AFRKLKNK
Sbjct: 496  KDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQEIGELMGVSRERVRQIELSAFRKLKNK 555

Query: 2102 RRTKHLQQYLIS 2137
             RTK L+QY+++
Sbjct: 556  NRTKQLRQYMVA 567


>gb|EMJ05079.1| hypothetical protein PRUPE_ppa006657mg [Prunus persica]
          Length = 401

 Score =  559 bits (1440), Expect = e-156
 Identities = 287/398 (72%), Positives = 314/398 (78%)
 Frame = +2

Query: 944  EIGLSKNHSFEYPFTEPNDIEPTNXXXXXXQAQLSATITVRSMRQXXXXXXXXXXXXXXX 1123
            E  L +NH  +    E  D+E TN      + QLS  IT RS RQ               
Sbjct: 4    ETALVENHFIQVAIKESEDVESTNQEFELLREQLSEGITARSSRQIERKARRAKAAEKAA 63

Query: 1124 XNXXXXXXXXXXXXXXXXLQDVDYFDPLRYXXXXXXXXXXXXXXXXXXXXXXIQDLLKLE 1303
             +                LQDVD+ DPLRY                      IQ+LLKLE
Sbjct: 64   ASVVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIELSEGIQELLKLE 123

Query: 1304 RLQEELAERCGAEPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQ 1483
            +LQEEL +RCG +PT AQWAAAAGVDQKTLRKR+NYGILCKDKMIKSNIRLVISIAKNYQ
Sbjct: 124  KLQEELVQRCGGQPTIAQWAAAAGVDQKTLRKRINYGILCKDKMIKSNIRLVISIAKNYQ 183

Query: 1484 GAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH 1663
            GAGMNLQDLVQ+GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH
Sbjct: 184  GAGMNLQDLVQQGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH 243

Query: 1664 MVEATYRVKEAKKQLYTEHGKHPNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQ 1843
            MVEATYRV+EAKKQLY+ +G+HPNDEEVAEATGLSMKRL+AV+LTPKAPRSL+QKIGINQ
Sbjct: 244  MVEATYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQ 303

Query: 1844 NLKPSEVIADPEGETAEDLLIKQFMRQDLEKVLDSLNPREKQVIRWRFGLEDGRMKTLQE 2023
            NLKPSEVIADPE ETAED+L+K+FM+QDLEKVLDSLN REKQV+RWRFGLEDGRMKTLQE
Sbjct: 304  NLKPSEVIADPEAETAEDMLMKKFMKQDLEKVLDSLNAREKQVVRWRFGLEDGRMKTLQE 363

Query: 2024 IGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLIS 2137
            IGELMGVSRERIRQIESCAFRKLKNK+RTKHLQQY++S
Sbjct: 364  IGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVVS 401


>ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Capsella rubella]
            gi|482575837|gb|EOA40024.1| hypothetical protein
            CARUB_v10008711mg [Capsella rubella]
          Length = 571

 Score =  558 bits (1439), Expect = e-156
 Identities = 318/613 (51%), Positives = 375/613 (61%), Gaps = 2/613 (0%)
 Frame = +2

Query: 305  SCLLPQFKCLPDTFALTFKSHHHSATQLSKGRDPEYIRTQCIXXXXXXXXXXXXXXXDIE 484
            SCLLPQFKC PD+F++ F++   S ++ +KG  P + + QC                   
Sbjct: 3    SCLLPQFKCQPDSFSIHFRTSF-SVSKQNKG--PVFFQPQCAVT---------------- 43

Query: 485  KLRLPALEANSNSTTDGSWKPTTSTTMTAVLDMEKLNLLPVDANSSLITGSRPWTYIGAT 664
                                 T+   +T+ LD+ KL L   D +S      R WTY G  
Sbjct: 44   ---------------------TSPALLTSTLDVAKLRLPSFDTDSDSRISDRQWTYTGTV 82

Query: 665  APSMETNLGAALVTENLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSRGNLNKSDS 844
             PS E     AL +E L+TS                           +  +  N N   S
Sbjct: 83   GPSTEAKYLEALASETLLTSDEAVVAAAAAEAVALARAAVKVAKDATLFKNSNNTNLLIS 142

Query: 845  KKTDFASDANTQESIQPYDLAERVSEIGESKVDEIGLSKNHSFEYPFTEPN--DIEPTNX 1018
                  S A+ +     +   ER   +G   V + G+  + S      + +  D+     
Sbjct: 143  ------STADKRSKWDQFTEKERAGILGHLAVSDTGIVSDKSTAPASNKESSADLISEIQ 196

Query: 1019 XXXXXQAQLSATITVRSMRQXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXLQDVDYF 1198
                 + Q +A++ VRS RQ                                  Q+VD+ 
Sbjct: 197  EVELVEEQPAASLAVRSTRQTERKARRAKGLEKSASAIPSVKTGSSPRKKRVVAQEVDHN 256

Query: 1199 DPLRYXXXXXXXXXXXXXXXXXXXXXXIQDLLKLERLQEELAERCGAEPTFAQWAAAAGV 1378
            DPLRY                      IQDLLKLERLQ EL ERCG +PTF+QWA+AAGV
Sbjct: 257  DPLRYLRVTTSSSKLLTVREEHELSAGIQDLLKLERLQAELTERCGRQPTFSQWASAAGV 316

Query: 1379 DQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 1558
            DQK+LRKR+NYG  CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD
Sbjct: 317  DQKSLRKRINYGTQCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 376

Query: 1559 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYTEHGKHPND 1738
            A+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEA+KQLYTE G+HP +
Sbjct: 377  ATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYTEKGRHPEN 436

Query: 1739 EEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVIADPEGETAEDLLIKQFM 1918
            EEVAEATGLSMKRL AV+L+PK PRSLDQKIG+NQNLKPSEVIADPE ET+ED+LIKQFM
Sbjct: 437  EEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAETSEDILIKQFM 496

Query: 1919 RQDLEKVLDSLNPREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN 2098
            R+DL+KVLDSL  REKQVIRWRFG+EDGRMKTLQEIGELMGVSRER+RQIES AFRKLKN
Sbjct: 497  REDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERVRQIESSAFRKLKN 556

Query: 2099 KRRTKHLQQYLIS 2137
            K+R+ HLQQYL++
Sbjct: 557  KKRSNHLQQYLVA 569


>ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutrema salsugineum]
            gi|557095448|gb|ESQ36030.1| hypothetical protein
            EUTSA_v10007187mg [Eutrema salsugineum]
          Length = 579

 Score =  553 bits (1425), Expect = e-154
 Identities = 320/623 (51%), Positives = 378/623 (60%), Gaps = 12/623 (1%)
 Frame = +2

Query: 305  SCLLPQFKCLPDTFALTFKSHHHSATQLSKGRDPEYIRTQCIXXXXXXXXXXXXXXXDIE 484
            SCLLPQFKC PD+F++ FK+ + S ++ +KG    + + QC                   
Sbjct: 3    SCLLPQFKCQPDSFSIHFKTSY-SLSKHNKGS--VFFQPQCAVS---------------- 43

Query: 485  KLRLPALEANSNSTTDGSWKPTTSTTMTAVLDMEKLNLLPVDANSSLITGSRPWTYIGAT 664
                                 T+   +T++LD+ KL L   D +S      R WTY G  
Sbjct: 44   ---------------------TSPPLLTSMLDVAKLRLPSFDTDSDSRISDRQWTYTGTV 82

Query: 665  APSMETNLGAALVTENLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSRGNLNKSDS 844
             PS E     AL +E L+TS                           +     +   S +
Sbjct: 83   GPSTEAKYLEALASETLLTSDEAVVAAAAAEAVALARAAVK------VAKDATSFRNSYN 136

Query: 845  KKTDFASDANTQESIQPYDLAERVSEIGESKVDEIGLSKNHSFE-----YPFTEPN---- 997
             K   +S A+ +     +   ER   +G   V + G+  + S        P   P+    
Sbjct: 137  TKVVVSSAADKRSKWDQFTEKERAGILGHLAVSDTGVVSDKSTAPAPAPAPAPAPDCNNE 196

Query: 998  ---DIEPTNXXXXXXQAQLSATITVRSMRQXXXXXXXXXXXXXXXXNXXXXXXXXXXXXX 1168
               D++         + QLS +  VRS RQ                +             
Sbjct: 197  SSGDLKSEKQEVELLEEQLSVSSAVRSTRQTERKARRAKGLEKTASSMQSVKTGSSSRKK 256

Query: 1169 XXXLQDVDYFDPLRYXXXXXXXXXXXXXXXXXXXXXXIQDLLKLERLQEELAERCGAEPT 1348
                Q+VD+ DPLRY                      IQDLLKLERLQ EL ERCG +PT
Sbjct: 257  RAPSQEVDHNDPLRYLRMTTSSSKLLTAREEQELSEGIQDLLKLERLQAELTERCGHQPT 316

Query: 1349 FAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCR 1528
            FAQWA+AAGVDQK+LRKR+NYG  CKD+MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCR
Sbjct: 317  FAQWASAAGVDQKSLRKRINYGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCR 376

Query: 1529 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQL 1708
            GLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEA+KQL
Sbjct: 377  GLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQL 436

Query: 1709 YTEHGKHPNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVIADPEGET 1888
            Y+E GK P +EEVAEATGLSMKRL AV+L+PK PRSLDQKIGINQNLKPSEVIADPE ET
Sbjct: 437  YSETGKQPENEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGINQNLKPSEVIADPEAET 496

Query: 1889 AEDLLIKQFMRQDLEKVLDSLNPREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 2068
            +ED+LIKQFMRQDL+KVLDSL+ REKQVIRWRFG+EDGRMKTLQEIGE MGVSRER+RQI
Sbjct: 497  SEDILIKQFMRQDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGVSRERVRQI 556

Query: 2069 ESCAFRKLKNKRRTKHLQQYLIS 2137
            ES AFRKLKNK+R+ HLQQYL++
Sbjct: 557  ESSAFRKLKNKKRSNHLQQYLVA 579


>ref|XP_002325455.2| hypothetical protein POPTR_0019s06100g [Populus trichocarpa]
            gi|550316911|gb|EEE99836.2| hypothetical protein
            POPTR_0019s06100g [Populus trichocarpa]
          Length = 555

 Score =  553 bits (1425), Expect = e-154
 Identities = 306/528 (57%), Positives = 357/528 (67%), Gaps = 1/528 (0%)
 Frame = +2

Query: 557  TTMTAVLDMEKLNLLPVDANSSLITGSRPWTYIGATAPSMETNLGAALVTENLITSXXXX 736
            +T TAVL++EKL L  ++++S  I  +RPWTYIG   P  E   G +L TE LI +    
Sbjct: 29   STSTAVLNLEKLRLPSLESHSDSIAANRPWTYIGGIGPPKEPLFGTSLATETLIINDEAV 88

Query: 737  XXXXXXXXXXXXXXXXXXXXXXXMMVSRGNLNKSDSKKTDFASDANTQESIQPYDLA-ER 913
                                    M ++   + +   K   AS A++  S+       ER
Sbjct: 89   IAAAAAEAVALARAAVKVAKDAAEM-AKNYCSVNTETKIPIASTADSFSSMWCLLTGKER 147

Query: 914  VSEIGESKVDEIGLSKNHSFEYPFTEPNDIEPTNXXXXXXQAQLSATITVRSMRQXXXXX 1093
               IG S   E GL +  S +YP  E +   PT+      + QLS +I VRS RQ     
Sbjct: 148  ADIIGVSFSAETGLREECSTQYPTEESDCFGPTHEELALLEKQLSESIVVRSKRQTQRKA 207

Query: 1094 XXXXXXXXXXXNXXXXXXXXXXXXXXXXLQDVDYFDPLRYXXXXXXXXXXXXXXXXXXXX 1273
                       N                +Q+VD  DPLR+                    
Sbjct: 208  KRARAAEKAAANFVFMKSGSACKKKRVPVQEVDQSDPLRFFRGASTSSRLLSATEEVELS 267

Query: 1274 XXIQDLLKLERLQEELAERCGAEPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIR 1453
              IQDLLKLER++EEL ER G +PTFAQWAAAA VDQ TLRKRLNY ILCKDKMIKSNIR
Sbjct: 268  EGIQDLLKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAILCKDKMIKSNIR 327

Query: 1454 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 1633
            LVISIAKNYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWI+QAVR+SLSD
Sbjct: 328  LVISIAKNYQGAGMNLQDLVQEGCRGLVRGVEKFDASKGFKFSTYAHWWIRQAVRRSLSD 387

Query: 1634 QSRTIRLPFHMVEATYRVKEAKKQLYTEHGKHPNDEEVAEATGLSMKRLSAVMLTPKAPR 1813
            QSRTIRLPFHMV+ATYRVKEA+KQ Y+E+G+HP+D+EVAEATGLSMKRLSAV+LTPKAPR
Sbjct: 388  QSRTIRLPFHMVDATYRVKEARKQFYSENGRHPDDKEVAEATGLSMKRLSAVLLTPKAPR 447

Query: 1814 SLDQKIGINQNLKPSEVIADPEGETAEDLLIKQFMRQDLEKVLDSLNPREKQVIRWRFGL 1993
            SLDQK+G N +LK SEV ADPE ETAEDLL+K+FM++DLE+VL+SL+PRE QVIRWRFG+
Sbjct: 448  SLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLERVLESLSPRENQVIRWRFGM 507

Query: 1994 EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLIS 2137
            EDGRMKTLQEIGELMGVSRERIRQIE  AFRKLKNK RTK L+QYL+S
Sbjct: 508  EDGRMKTLQEIGELMGVSRERIRQIELSAFRKLKNKNRTKQLRQYLVS 555


>ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [Amborella trichopoda]
            gi|548831956|gb|ERM94758.1| hypothetical protein
            AMTR_s00011p00258380 [Amborella trichopoda]
          Length = 570

 Score =  551 bits (1421), Expect = e-154
 Identities = 305/532 (57%), Positives = 360/532 (67%), Gaps = 4/532 (0%)
 Frame = +2

Query: 554  STTMTAVLDMEKLNLLPVDANSSLITGSRPWTYIGATAPSMETNLGAALVTENLITSXXX 733
            S+T T V+D++K+ +  +  +S+ ++   P TY+G      +T+  AALVTE+L+ S   
Sbjct: 40   SSTATVVVDVDKVRVPSLGGHSTSVSTHGPLTYVGTIGSQKKTDFEAALVTESLLKSEEA 99

Query: 734  XXXXXXXXXXXXXXXXXXXXXXXXMMVSRGNLNKSDSKKTDFASDANTQESIQPYDLAE- 910
                                    +MV     ++SD K  DF S+A+    +Q   L E 
Sbjct: 100  IIAAAAAEAIALAKAAAKLAKDAALMVGSVPPSRSD-KVDDFPSEADILR-LQRARLTEM 157

Query: 911  -RVSEIGESKVDEIGLSKNHSFEYPFT--EPNDIEPTNXXXXXXQAQLSATITVRSMRQX 1081
             R+  +  S +  IG    H      +  E  D +         Q Q S  + VRS RQ 
Sbjct: 158  ERIGSMDGSSIAGIGPRDKHKSVNQLSPNEMADKQSRENILEALQLQHSQRVAVRSRRQT 217

Query: 1082 XXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXLQDVDYFDPLRYXXXXXXXXXXXXXXXX 1261
                           N                LQ++DY DPLRY                
Sbjct: 218  ERRARRAKGVEKAAANAITVKLGTTSRRKRAPLQEIDYSDPLRYLRGTTNSTKLLTATEE 277

Query: 1262 XXXXXXIQDLLKLERLQEELAERCGAEPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIK 1441
                  IQDLLKLE+L +EL ER G EPTF QWAAAAG+DQK LR+RL+YG  CKDKMIK
Sbjct: 278  LELSEGIQDLLKLEKLHKELTERFGGEPTFVQWAAAAGIDQKALRRRLSYGTHCKDKMIK 337

Query: 1442 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 1621
            SNIRLVISIAKNYQG G+++QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK
Sbjct: 338  SNIRLVISIAKNYQGVGLSIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 397

Query: 1622 SLSDQSRTIRLPFHMVEATYRVKEAKKQLYTEHGKHPNDEEVAEATGLSMKRLSAVMLTP 1801
            SLSDQSRTIRLPFHMV+ATYRV+EA KQLY+E+G+HPNDEEVAEATGLSMKRL+ V+LTP
Sbjct: 398  SLSDQSRTIRLPFHMVDATYRVREATKQLYSENGRHPNDEEVAEATGLSMKRLTTVLLTP 457

Query: 1802 KAPRSLDQKIGINQNLKPSEVIADPEGETAEDLLIKQFMRQDLEKVLDSLNPREKQVIRW 1981
            KAPRSLDQKIGINQNLKPSEVI+DPE ETAEDLL+KQFM+QDLEKVL++LNPREKQV+RW
Sbjct: 458  KAPRSLDQKIGINQNLKPSEVISDPEAETAEDLLMKQFMKQDLEKVLNTLNPREKQVVRW 517

Query: 1982 RFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLIS 2137
            RFGLEDGRMKTLQEIGELMGVSRERIRQIES AFRKLKNK+RTK+L+QYL+S
Sbjct: 518  RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKNLRQYLLS 569


>ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-like [Glycine max]
          Length = 564

 Score =  550 bits (1416), Expect = e-153
 Identities = 315/619 (50%), Positives = 386/619 (62%), Gaps = 7/619 (1%)
 Frame = +2

Query: 302  MSCLLPQFKCLPDTFALTFKSHHHSA-TQLSKGRDPEYIRTQCIXXXXXXXXXXXXXXXD 478
            MSCLLP F C  DTF    ++H ++  T LSK R     + QC+                
Sbjct: 1    MSCLLPHFNCHLDTF----RTHPYALPTHLSKTRPNLCFQPQCV---------------- 40

Query: 479  IEKLRLPALEANSNSTTDGSWKPTTSTTMTAVLDMEKLNLL--PVDANSSLITGSRPWTY 652
                    L A S ST               +L +EK   L  P D N+S       W Y
Sbjct: 41   --------LSATSPST---------------LLSLEKKLALDAPSDPNTS-------WPY 70

Query: 653  IGATAPSMETNLGAALVTENLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSRGNLN 832
            I A +P ++ N  + L  E+L+T+                           ++V      
Sbjct: 71   IAAVSPPLQANFKSTLSAESLLTNEEAVIVAAASEALALAKAAAKVAKDAALLVK----- 125

Query: 833  KSDSKKTDFASDANTQESIQPYDLAERVSEIGESKVDEIGLSKNHSFE----YPFTEPND 1000
            K    + ++ S  +++         +++ E+ +   +E   +     E     P  E +D
Sbjct: 126  KKPPAEAEYKSHVSSKSDDLLLKWFKQMEEVEDGVAEESMGAGAEIMEGVDVSPSEEESD 185

Query: 1001 IEPTNXXXXXXQAQLSATITVRSMRQXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXL 1180
            +EP++      Q QLS +I VRS RQ                N                +
Sbjct: 186  LEPSHEELERLQEQLSDSIAVRSRRQTERKAKRVRATEKATTNFTSFKPGSSSRRKRVSM 245

Query: 1181 QDVDYFDPLRYXXXXXXXXXXXXXXXXXXXXXXIQDLLKLERLQEELAERCGAEPTFAQW 1360
            Q+VDY DPLRY                      IQDLLKLE++QE+LAER G++PTFAQW
Sbjct: 246  QEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDLLKLEKIQEDLAERFGSQPTFAQW 305

Query: 1361 AAAAGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 1540
            AA AGVDQKTLRKRLNYGI CKDKMIKSNIRLVISIAKNYQG+GMNLQDLVQEGCRGLV+
Sbjct: 306  AAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVK 365

Query: 1541 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYTEH 1720
            GAEKFD +KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA+KQLY+E+
Sbjct: 366  GAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 425

Query: 1721 GKHPNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVIADPEGETAEDL 1900
            G+ P+DEEVAEATGLSMKRL+AV++TPKAPRSL+QKIGINQNLKPSEVI+DP+ ETAE+ 
Sbjct: 426  GRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEEQ 485

Query: 1901 LIKQFMRQDLEKVLDSLNPREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCA 2080
            L+KQFM++DLE+ LDSLNPRE+QV+RWRFG++DGR KTLQEIGE++GVSRERIRQIES A
Sbjct: 486  LLKQFMKKDLEEALDSLNPRERQVVRWRFGMDDGRTKTLQEIGEMLGVSRERIRQIESSA 545

Query: 2081 FRKLKNKRRTKHLQQYLIS 2137
            F+KLKNK+RT HLQQYL+S
Sbjct: 546  FKKLKNKKRTNHLQQYLVS 564


>emb|CAD20831.2| sigma factor [Spinacia oleracea]
          Length = 575

 Score =  548 bits (1413), Expect = e-153
 Identities = 315/614 (51%), Positives = 374/614 (60%), Gaps = 4/614 (0%)
 Frame = +2

Query: 302  MSCLLPQFKCLPDTFALTFKSH----HHSATQLSKGRDPEYIRTQCIXXXXXXXXXXXXX 469
            M+CLLPQFKC PDTF+++   H      SAT L + RD    R QC              
Sbjct: 1    MTCLLPQFKCQPDTFSISSVLHPPSASSSATSLLRNRDLVCFRPQCAVSTPP-------- 52

Query: 470  XXDIEKLRLPALEANSNSTTDGSWKPTTSTTMTAVLDMEKLNLLPVDANSSLITGSRPWT 649
                                     P T+   T++ D+EKL L  V++NS+ ++     T
Sbjct: 53   -------------------------PPTAAAETSIFDVEKLRLPYVESNSNSLSAFAQST 87

Query: 650  YIGATAPSMETNLGAALVTENLITSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSRGNL 829
            ++       E     AL  + LI +                           +M      
Sbjct: 88   FLSTLGSPAEVKFDTALTAKLLIENEEAVIAAAAAEAVALARAAAKLAKDAALMAFNSQP 147

Query: 830  NKSDSKKTDFASDANTQESIQPYDLAERVSEIGESKVDEIGLSKNHSFEYPFTEPNDIEP 1009
             K  SK    +   +  + ++     E+V  +   +  E  L +  +     +EP D+EP
Sbjct: 148  TKPVSKLEGQSLHFSGAQLLEN----EQVGSMRNFEGSENSLREGDTV----SEPADMEP 199

Query: 1010 TNXXXXXXQAQLSATITVRSMRQXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXLQDV 1189
            T       + +L  +ITVRS RQ                N                +Q+V
Sbjct: 200  TIEELQLLEVELDESITVRSTRQGERKARRARAAEKVASNVVSVKVGSNSRKKRTSVQEV 259

Query: 1190 DYFDPLRYXXXXXXXXXXXXXXXXXXXXXXIQDLLKLERLQEELAERCGAEPTFAQWAAA 1369
            DY DPLRY                      IQDLLKLE+L +EL  R G  P+F QWAAA
Sbjct: 260  DYSDPLRYLRGATNSSRLLTSSEETELSAGIQDLLKLEKLHDELKVRFGKSPSFVQWAAA 319

Query: 1370 AGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 1549
            AG+DQ+TLR+RLN+G  CKDKMIKSN+RLVISIAKNYQG+GMNLQDLVQEGCRGLVRGAE
Sbjct: 320  AGIDQRTLRRRLNHGTFCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAE 379

Query: 1550 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYTEHGKH 1729
            KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA+KQL +E+GK 
Sbjct: 380  KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGKQ 439

Query: 1730 PNDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVIADPEGETAEDLLIK 1909
            PN+EEVAEATGLSMKRL+AV++TPKAPRSLDQKIG N NLKPSEVIADPE ETAEDLL K
Sbjct: 440  PNNEEVAEATGLSMKRLTAVLMTPKAPRSLDQKIGFNMNLKPSEVIADPEAETAEDLLTK 499

Query: 1910 QFMRQDLEKVLDSLNPREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRK 2089
            QFMRQDLEKVLD+L+ REKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES AFRK
Sbjct: 500  QFMRQDLEKVLDTLSSREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 559

Query: 2090 LKNKRRTKHLQQYL 2131
            L+NK++T +LQQY+
Sbjct: 560  LQNKKKTINLQQYM 573