BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00010450
         (2262 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32760.3| unnamed protein product [Vitis vinifera]              519   e-144
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   516   e-143
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   498   e-138
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   495   e-137
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   494   e-137
gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus pe...   489   e-135
gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theob...   483   e-133
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   480   e-132
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   479   e-132
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   478   e-132
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   476   e-131
ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF,...   473   e-130
ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,...   471   e-130
ref|XP_002326192.1| predicted protein [Populus trichocarpa]           456   e-125
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   456   e-125
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   452   e-124
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   449   e-123
gb|ESW16353.1| hypothetical protein PHAVU_007G149600g [Phaseolus...   447   e-122
ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF,...   446   e-122
ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF,...   444   e-121

>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  519 bits (1336), Expect = e-144
 Identities = 295/563 (52%), Positives = 357/563 (63%), Gaps = 34/563 (6%)
 Frame = +2

Query: 266  MEAARNFLASPPTLSSRTHLRNCSFTSSSL---------------------SVHIQDQHD 382
            MEA  N L+S P+   RTH RN S +   L                     SV +Q+Q D
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSSSSVLMLHDQVAPAVASIPTTIARKFPTSVLLQEQRD 60

Query: 383  EGWQSVQLRKDERTSQATLDRRLINAASSPNEENNDPDKSESKS-RMQLLHVPGLWYLFK 559
            E     Q  KDERT QATL++R +    S +EEN+D       +   QLL  PGLWY   
Sbjct: 61   EYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWYSLP 120

Query: 560  SLEA----------IQSLKSEAENLSNVEAKSVIXXXXXXXXXXXXXXXXXXXXXXXGRN 709
            S +           ++S+ ++ EN  +V+   V+                       G +
Sbjct: 121  SSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGAD 180

Query: 710  XXXXXXXXXXXXXXXXXPLEEEKIXXXXXXXXXXXXXXXXXXXXXXQERNCSGNLHLQRK 889
                             PLEE+ +                       E + S    +QRK
Sbjct: 181  LEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVAV--HENHGSRRAEVQRK 238

Query: 890  ITEAFDQDDPLRLFT-GPET-KLLTVNEESDLIMEIQEYLKLEEAKSKLQNQFGREPSLV 1063
            I E +D  DPLRLF  GPET KLLT  EES+LI++IQE ++LEE K +LQ+   REP++V
Sbjct: 239  INEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVV 298

Query: 1064 EWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGLSLPDLLQEGSMGL 1243
            EW EAVGLSC+ LQSQL+SG  SR+KLI+AN RMVVHIAK+YQGRGL+L DLLQEGSMGL
Sbjct: 299  EWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGL 358

Query: 1244 MRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGLLSKVKEAKRTCIQ 1423
            M S+EKFKP  GCRFA+YAYWWIRQA+RKAIFQHSRTIRLP+NMY LL KVKEAKR  IQ
Sbjct: 359  MNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQ 418

Query: 1424 QGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTFQEVTADTAIEAPD 1603
            +G H PTKEEIA   G+T+EKL++LL   RMPLS+QQPVWADQDTTFQEVTADT IE PD
Sbjct: 419  EGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPD 478

Query: 1604 LSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAVFGLSKERVRQLES 1783
            +SV KQLMR HVRNLL +L PKER+IIRLRFGI DG  R+LSEIG VFG SKERVRQLE 
Sbjct: 479  VSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQ 538

Query: 1784 RGLYRLKQCLNSQGLKAYGDLVL 1852
            R L++LKQCL+S GL++Y DL++
Sbjct: 539  RALHKLKQCLSSHGLESYTDLLV 561


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  516 bits (1328), Expect = e-143
 Identities = 294/574 (51%), Positives = 358/574 (62%), Gaps = 45/574 (7%)
 Frame = +2

Query: 266  MEAARNFLASPPTLSSRTHLRNCSFTSSSL------------------------------ 355
            MEA  N L+S P+   RTH RN S + ++                               
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPTTIARKF 60

Query: 356  --SVHIQDQHDEGWQSVQLRKDERTSQATLDRRLINAASSPNEENNDPDKSESKS-RMQL 526
              SV +Q+Q DE     Q  KDERT QATL++R +    S +EEN+D       +   QL
Sbjct: 61   PTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQL 120

Query: 527  LHVPGLWYLFKSLEA----------IQSLKSEAENLSNVEAKSVIXXXXXXXXXXXXXXX 676
            L  PGLWY   S +           ++S+ ++ EN  +V+   V+               
Sbjct: 121  LLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVS 180

Query: 677  XXXXXXXXGRNXXXXXXXXXXXXXXXXXPLEEEKIXXXXXXXXXXXXXXXXXXXXXXQER 856
                    G +                 PLEE+ +                       E 
Sbjct: 181  LYENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVAV--HEN 238

Query: 857  NCSGNLHLQRKITEAFDQDDPLRLFT-GPET-KLLTVNEESDLIMEIQEYLKLEEAKSKL 1030
            + S    +QRKI E +D  DPLRLF  GPET KLLT  EES+LI++IQE ++LEE K +L
Sbjct: 239  HGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRL 298

Query: 1031 QNQFGREPSLVEWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGLSL 1210
            Q+   REP++VEW EAVGLSC+ LQSQL+SG  SR+KLI+AN RMVVHIAK+YQGRGL+L
Sbjct: 299  QSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNL 358

Query: 1211 PDLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGLLS 1390
             DLLQEGSMGLM S+EKFKP  GCRFA+YAYWWIRQA+RKAIFQHSRTIRLP+NMY LL 
Sbjct: 359  QDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLG 418

Query: 1391 KVKEAKRTCIQQGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTFQE 1570
            KVKEAKR  IQ+G H PTKEEIA   G+T+EKL++LL   RMPLS+QQPVWADQDTTFQE
Sbjct: 419  KVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQE 478

Query: 1571 VTADTAIEAPDLSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAVFG 1750
            VTADT IE PD+SV KQLMR HVRNLL +L PKER+IIRLRFGI DG  R+LSEIG VFG
Sbjct: 479  VTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFG 538

Query: 1751 LSKERVRQLESRGLYRLKQCLNSQGLKAYGDLVL 1852
             SKERVRQLE R L++LKQCL+S GL++Y DL++
Sbjct: 539  FSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 572


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  498 bits (1281), Expect = e-138
 Identities = 280/566 (49%), Positives = 360/566 (63%), Gaps = 37/566 (6%)
 Frame = +2

Query: 266  MEAARNFLASPPTLSSRTHLRNCSFTSSS-----------------------LSVHIQDQ 376
            MEA RN L+SPP+  SRT +++   +S+S                        SV +Q+Q
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQ 60

Query: 377  HDEGWQSVQLRKDERTSQATLDRRLINAASSPNEENN--DPDKSESKSRMQLLHVPGLWY 550
             DE    + + K+++TSQAT D R +   +   EE N  D D+       Q LH P LW 
Sbjct: 61   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWN 120

Query: 551  LFKSLE---------AIQSLKSEAENLSNVEAKSVIXXXXXXXXXXXXXXXXXXXXXXXG 703
            L   ++          +QSL ++ E   + E    +                       G
Sbjct: 121  LSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNG 180

Query: 704  RNXXXXXXXXXXXXXXXXXPLEEEK-IXXXXXXXXXXXXXXXXXXXXXXQERNCSGNLHL 880
                               PLEE K +                       E   S    +
Sbjct: 181  AEFTDISLTSSLGY-----PLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKASV 235

Query: 881  QRKITEAFDQDDPLRLFT-GPET-KLLTVNEESDLIMEIQEYLKLEEAKSKLQNQFGREP 1054
            ++K++E FD++DPLRLF  GPET KLLT +EE +LI +IQ+ ++LE+ KSKLQ+QFGREP
Sbjct: 236  KKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP 295

Query: 1055 SLVEWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGLSLPDLLQEGS 1234
            +L+EW +A+GLSCR L+S+L+SG  SREKLI+AN R+VVH+AK+YQGRG+ L DLLQEGS
Sbjct: 296  TLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGS 355

Query: 1235 MGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGLLSKVKEAKRT 1414
            MGLM+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y LLS+V EAKR 
Sbjct: 356  MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRL 415

Query: 1415 CIQQGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTFQEVTADTAIE 1594
             IQ+G H P KE++A   G+TVEKLE+L+F  RMPLS+QQPVWADQDTTFQE+TADT +E
Sbjct: 416  YIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVE 475

Query: 1595 APDLSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAVFGLSKERVRQ 1774
             PD+SV+KQLMR HVRNLL++LNPKER I+RLRFGIEDG+ +SLSE+G +FGLSKERVRQ
Sbjct: 476  IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 535

Query: 1775 LESRGLYRLKQCLNSQGLKAYGDLVL 1852
            LESR LYRLKQ L  +    Y DL++
Sbjct: 536  LESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  495 bits (1275), Expect = e-137
 Identities = 281/574 (48%), Positives = 362/574 (63%), Gaps = 45/574 (7%)
 Frame = +2

Query: 266  MEAARNFLASPPTLSSRTHLRNC------SFTSSSLSVH--------------------- 364
            MEA RN L+SPP+  SRT +++       S +SSS+ +H                     
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 365  ----IQDQHDEGWQSVQLRKDERTSQATLDRRLINAASSPNEENN--DPDKSESKSRMQL 526
                +Q+Q DE    + + K+++TSQAT D R +   +   EE N  D D+       Q 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 527  LHVPGLWYLFKSLE---------AIQSLKSEAENLSNVEAKSVIXXXXXXXXXXXXXXXX 679
            LH P LW L   ++          +QSL ++ E   + E    +                
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 680  XXXXXXXGRNXXXXXXXXXXXXXXXXXPLEEEK-IXXXXXXXXXXXXXXXXXXXXXXQER 856
                   G                   PLEE K +                       E 
Sbjct: 181  AENPKLNGAEFTDISLTSSLGY-----PLEEVKTVRSTQFLERRSKKRKVSKPKVTNHET 235

Query: 857  NCSGNLHLQRKITEAFDQDDPLRLFT-GPET-KLLTVNEESDLIMEIQEYLKLEEAKSKL 1030
              S    +++K++E FD++DPLRLF  GPET KLLT +EE +LI +IQ+ ++LE+ KSKL
Sbjct: 236  YNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL 295

Query: 1031 QNQFGREPSLVEWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGLSL 1210
            Q+QFGREP+L+EW +A+GLSCR L+S+L+SG  SREKLI+AN R+VVH+AK+YQGRG+ L
Sbjct: 296  QSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGL 355

Query: 1211 PDLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGLLS 1390
             DLLQEGSMGLM+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y LLS
Sbjct: 356  HDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLS 415

Query: 1391 KVKEAKRTCIQQGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTFQE 1570
            +V EAKR  IQ+G H P KE++A   G+TVEKLE+L+F  RMPLS+QQPVWADQDTTFQE
Sbjct: 416  RVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQE 475

Query: 1571 VTADTAIEAPDLSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAVFG 1750
            +TADT +E PD+SV+KQLMR HVRNLL++LNPKER I+RLRFGIEDG+ +SLSE+G +FG
Sbjct: 476  ITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG 535

Query: 1751 LSKERVRQLESRGLYRLKQCLNSQGLKAYGDLVL 1852
            LSKERVRQLESR LYRLKQ L  +    Y DL++
Sbjct: 536  LSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  494 bits (1272), Expect = e-137
 Identities = 280/575 (48%), Positives = 360/575 (62%), Gaps = 46/575 (8%)
 Frame = +2

Query: 266  MEAARNFLASPPTLSSRTHLRNCSFTSSS------------------------------- 352
            MEA RN L+SPP+  SRT +++   +S+S                               
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAVLMHNEQSAPAVASVPTSSVARHF 60

Query: 353  -LSVHIQDQHDEGWQSVQLRKDERTSQATLDRRLINAASSPNEENN--DPDKSESKSRMQ 523
              SV +Q+Q DE    + + K+++TSQAT D R +   +   EE N  D D+       Q
Sbjct: 61   PTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQ 120

Query: 524  LLHVPGLWYLFKSLE---------AIQSLKSEAENLSNVEAKSVIXXXXXXXXXXXXXXX 676
             LH P LW L   ++          +QSL ++ E   + E    +               
Sbjct: 121  FLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAAS 180

Query: 677  XXXXXXXXGRNXXXXXXXXXXXXXXXXXPLEEEK-IXXXXXXXXXXXXXXXXXXXXXXQE 853
                    G                   PLEE K +                       E
Sbjct: 181  LAENPKLNGAEFTDISLTSSLGY-----PLEEVKTVRSTQFLERRSKKRKVSKPKVTNHE 235

Query: 854  RNCSGNLHLQRKITEAFDQDDPLRLFT-GPET-KLLTVNEESDLIMEIQEYLKLEEAKSK 1027
               S    +++K++E FD++DPLRLF  GPET KLLT +EE +LI +IQ+ ++LE+ KSK
Sbjct: 236  TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 295

Query: 1028 LQNQFGREPSLVEWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGLS 1207
            LQ+QFGREP+L+EW +A+GLSCR L+S+L+SG  SREKLI+AN R+VVH+AK+YQGRG+ 
Sbjct: 296  LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIG 355

Query: 1208 LPDLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGLL 1387
            L DLLQEGSMGLM+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y LL
Sbjct: 356  LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 415

Query: 1388 SKVKEAKRTCIQQGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTFQ 1567
            S+V EAKR  IQ+G H P KE++A   G+TVEKLE+L+F  RMPLS+QQPVWADQDTTFQ
Sbjct: 416  SRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 475

Query: 1568 EVTADTAIEAPDLSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAVF 1747
            E+TADT +E PD+SV+KQLMR HVRNLL++LNPKER I+RLRFGIEDG+ +SLSE+G +F
Sbjct: 476  EITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIF 535

Query: 1748 GLSKERVRQLESRGLYRLKQCLNSQGLKAYGDLVL 1852
            GLSKERVRQLESR LYRLKQ L  +    Y DL++
Sbjct: 536  GLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 570


>gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  489 bits (1259), Expect = e-135
 Identities = 286/574 (49%), Positives = 365/574 (63%), Gaps = 45/574 (7%)
 Frame = +2

Query: 266  MEAARNFLASPPTLSSRTHLRN----CSFTSSSLSVH----------------------- 364
            MEA R+FL+S     S THLR+     S ++S L +H                       
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 365  -IQDQHDEGWQSVQLRKDERTSQATLDRRLINAASSPNEENNDPD--KSESKSRMQLLHV 535
             +Q+Q DE    + + K+++TS+A LDR  I   +S +E+ +  D     + S+ QLL+ 
Sbjct: 61   LLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLLN- 119

Query: 536  PGLWYLFKSLEA---------IQSLKSEAENLSNVEAKSVIXXXXXXXXXXXXXXXXXXX 688
              +  +F SL+          ++SL + +    +VE  +V+                   
Sbjct: 120  HDILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAED 179

Query: 689  XXXXGRNXXXXXXXXXXXXXXXXXPLEEEKIXXXXXXXXXXXXXXXXXXXXXXQ----ER 856
                G +                  +EEEK                       +    E 
Sbjct: 180  SQSMGADFDDLGYTSLANWI-----VEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHES 234

Query: 857  NCSGNLHLQRKITEAFDQDDPLRLFT-GPETK-LLTVNEESDLIMEIQEYLKLEEAKSKL 1030
            N      +++KI+E F+ +DPLRLF  GPET+ LLT  EE++LI  +Q+  KLEE KS+L
Sbjct: 235  NSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRL 294

Query: 1031 QNQFGREPSLVEWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGLSL 1210
            Q QFGREP+L+EW EAVG+SC+ L+SQL SG  SREKLI+AN RMVVHIAK+YQGRGL L
Sbjct: 295  QTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGL 354

Query: 1211 PDLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGLLS 1390
             DL+QEGSMGLM+S+EKFKPQ GCRFATYAYWWIRQ +RKAIFQHSRTIRLP+N+Y LL 
Sbjct: 355  QDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLG 414

Query: 1391 KVKEAKRTCIQQGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTFQE 1570
            KV EAK++CIQ+G H+P KEE+A   G+TVEKLEKLL+  RMPLS+QQPVWADQDTTFQE
Sbjct: 415  KVLEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQE 474

Query: 1571 VTADTAIEAPDLSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAVFG 1750
            VTADT +E PD+SV KQLMR HVR+LLSILN +ER+IIRLR+GIEDG+QRSLSEIG +FG
Sbjct: 475  VTADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMFG 534

Query: 1751 LSKERVRQLESRGLYRLKQCLNSQGLKAYGDLVL 1852
            LSKERVRQLESR   +L+Q L SQGL AYG L++
Sbjct: 535  LSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 568


>gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  483 bits (1242), Expect = e-133
 Identities = 276/571 (48%), Positives = 361/571 (63%), Gaps = 42/571 (7%)
 Frame = +2

Query: 266  MEAARNFLASPPTLSSRTHLRNCSFTSSS---------------------------LSVH 364
            MEAARN L+ PPT S+RT L++  F++SS                            SV 
Sbjct: 1    MEAARNLLSPPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTSVL 60

Query: 365  IQDQHDEGWQSVQLR--KDERTSQATLDRRLINAASSPNEENNDPDKSESKSRMQLLHVP 538
            +Q+Q D+      L   K+++      D++ I   +S NEEN   +  +     +LL  P
Sbjct: 61   LQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQLGFEKKLLQWP 120

Query: 539  GLWYLFKSLEA---------IQSLKSEAENLSNVEAKSVIXXXXXXXXXXXXXXXXXXXX 691
             L  L   LE+         +QS+ ++ + + +VE  +++                    
Sbjct: 121  DLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAASLSEDL 180

Query: 692  XXXGRNXXXXXXXXXXXXXXXXXPLEEEKIXXXXXXXXXXXXXXXXXXXXXX--QERNCS 865
                 +                 P+E+E++                        +E   S
Sbjct: 181  KL---DLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRVQPKVTIRETYSS 237

Query: 866  GNLHLQRKITEAFDQDDPLRLFT-GPETK-LLTVNEESDLIMEIQEYLKLEEAKSKLQNQ 1039
                ++RK++E FD +DPLRLF  GPETK LLT  EES+L  ++Q  ++LE+ KSKLQ+Q
Sbjct: 238  RRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSKLQSQ 297

Query: 1040 FGREPSLVEWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGLSLPDL 1219
            FGREP+LVEW EA+GL C ALQ++L+SG  SR+KLI+AN RMVVHIAK+YQ RGLSL DL
Sbjct: 298  FGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLSLQDL 357

Query: 1220 LQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGLLSKVK 1399
            LQEGSMGLM+S+E+FKPQVGCRFATYAYWWIRQ IRK+I QHSRT+RLP+N++ LLSKV 
Sbjct: 358  LQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLLSKVL 417

Query: 1400 EAKRTCIQQGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTFQEVTA 1579
            +AK++ I++G H P+KEE+A   G+TVEKL+KLLFT RMPLS+QQ VW DQD TFQEVT 
Sbjct: 418  DAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQEVTP 477

Query: 1580 DTAIEAPDLSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAVFGLSK 1759
            DT IE PD+SV KQLMR HVRNLLS+L+P+ER II+LRFGIE+ ++ SLSEIG +FGLSK
Sbjct: 478  DTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKENSLSEIGNMFGLSK 537

Query: 1760 ERVRQLESRGLYRLKQCLNSQGLKAYGDLVL 1852
            ERVRQLESR LY+LKQCLN  GL AY DL++
Sbjct: 538  ERVRQLESRALYKLKQCLNKHGLGAYVDLLV 568


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530787|gb|ESR41970.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  480 bits (1235), Expect = e-132
 Identities = 276/563 (49%), Positives = 353/563 (62%), Gaps = 34/563 (6%)
 Frame = +2

Query: 266  MEAARNFLASPPTLSSRTHLRNCSFTSSS--------------------LSVHIQDQHDE 385
            MEA RN L+SPP+  SRT +++   +S+S                     SV +Q+Q DE
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVASVPTSSVARHFPTSVLLQEQRDE 60

Query: 386  GWQSVQLRKDERTSQATLDRRLINAASSPNEENN--DPDKSESKSRMQLLHVPGLWYLFK 559
                + + K+++TSQAT D R +   +   EE N  D D+       Q LH P LW L  
Sbjct: 61   YRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSP 120

Query: 560  SLE---------AIQSLKSEAENLSNVEAKSVIXXXXXXXXXXXXXXXXXXXXXXXGRNX 712
             ++          +QSL ++ E   + E    +                       G   
Sbjct: 121  PMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEF 180

Query: 713  XXXXXXXXXXXXXXXXPLEEEK-IXXXXXXXXXXXXXXXXXXXXXXQERNCSGNLHLQRK 889
                            PLEE K +                       E   S    +++K
Sbjct: 181  TDISLTSSLGY-----PLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKASVKKK 235

Query: 890  ITEAFDQDDPLRLFT-GPET-KLLTVNEESDLIMEIQEYLKLEEAKSKLQNQFGREPSLV 1063
            ++E FD +DPLRLF  GPET KLLT +EE +LI +IQ+ ++LE+ KSKLQ+QFGREP+L+
Sbjct: 236  LSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 295

Query: 1064 EWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGLSLPDLLQEGSMGL 1243
                   LSCR L+S+L+SG  SREKLI+AN R+VVH+AK+YQGRG+ L DLLQEGSMGL
Sbjct: 296  LKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMGL 355

Query: 1244 MRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGLLSKVKEAKRTCIQ 1423
            M+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y LLS+V EAKR  IQ
Sbjct: 356  MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQ 415

Query: 1424 QGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTFQEVTADTAIEAPD 1603
            +G H P KE++A   G+TVEKLE+L+F  RMPLS+QQPVWADQDTTFQE+TADT +E PD
Sbjct: 416  EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPD 475

Query: 1604 LSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAVFGLSKERVRQLES 1783
            +SV+KQLMR HVRNLL++LNPKER I+RLRFGIEDG+ +SLSE+G +FGLSKERVRQLES
Sbjct: 476  ISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 535

Query: 1784 RGLYRLKQCLNSQGLKAYGDLVL 1852
            R LYRLKQ L  +    Y DL++
Sbjct: 536  RALYRLKQSLGGKASYGYADLLI 558


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  479 bits (1232), Expect = e-132
 Identities = 276/566 (48%), Positives = 353/566 (62%), Gaps = 37/566 (6%)
 Frame = +2

Query: 266  MEAARNFLASPPTLSSRTHLRNCSFTSSS-----------------------LSVHIQDQ 376
            MEA RN L+SPP+  SRT +++   +S+S                        SV +Q+Q
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQ 60

Query: 377  HDEGWQSVQLRKDERTSQATLDRRLINAASSPNEENN--DPDKSESKSRMQLLHVPGLWY 550
             DE    + + K+++TSQAT D R +   +   EE N  D D+       Q LH P LW 
Sbjct: 61   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWN 120

Query: 551  LFKSLE---------AIQSLKSEAENLSNVEAKSVIXXXXXXXXXXXXXXXXXXXXXXXG 703
            L   ++          +QSL ++ E   + E    +                       G
Sbjct: 121  LSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNG 180

Query: 704  RNXXXXXXXXXXXXXXXXXPLEEEK-IXXXXXXXXXXXXXXXXXXXXXXQERNCSGNLHL 880
                               PLEE K +                       E   S    +
Sbjct: 181  AEFTDISLTSSLGY-----PLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKASV 235

Query: 881  QRKITEAFDQDDPLRLFT-GPET-KLLTVNEESDLIMEIQEYLKLEEAKSKLQNQFGREP 1054
            ++K++E FD +DPLRLF  GPET KLLT +EE +LI +IQ+ ++LE+ KSKLQ+QFGREP
Sbjct: 236  KKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP 295

Query: 1055 SLVEWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGLSLPDLLQEGS 1234
            +L+       LSCR L+S+L+SG  SREKLI+AN R+VVH+AK+YQGRG+ L DLLQEGS
Sbjct: 296  TLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGS 355

Query: 1235 MGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGLLSKVKEAKRT 1414
            MGLM+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y LLS+V EAKR 
Sbjct: 356  MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRL 415

Query: 1415 CIQQGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTFQEVTADTAIE 1594
             IQ+G H P KE++A   G+TVEKLE+L+F  RMPLS+QQPVWADQDTTFQE+TADT +E
Sbjct: 416  YIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVE 475

Query: 1595 APDLSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAVFGLSKERVRQ 1774
             PD+SV+KQLMR HVRNLL++LNPKER I+RLRFGIEDG+ +SLSE+G +FGLSKERVRQ
Sbjct: 476  IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 535

Query: 1775 LESRGLYRLKQCLNSQGLKAYGDLVL 1852
            LESR LYRLKQ L  +    Y DL++
Sbjct: 536  LESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  478 bits (1229), Expect = e-132
 Identities = 280/562 (49%), Positives = 350/562 (62%), Gaps = 33/562 (5%)
 Frame = +2

Query: 266  MEAARNFLASPPTLSSRTHLRNCSFTSSSL------------------------------ 355
            ME AR FL+SPP   SRTH +N   +S +                               
Sbjct: 1    METARTFLSSPPPFPSRTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTTSIARNFPT 60

Query: 356  SVHIQDQHDEGWQSVQLRKDERTSQATLDRRLINAASSPNEENNDPDKSESKSRMQLLHV 535
            SV +Q+Q DE    + + K+++T QAT+D + ++  +S ++E    D  +      +LH 
Sbjct: 61   SVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTS-DQEGICSDVLDQL----ILHS 115

Query: 536  PGLWYLFKSLEAIQSLKSEAENLSNVEAKSVIXXXXXXXXXXXXXXXXXXXXXXXGRNXX 715
               W L      +QS+ +  + L  VE  +VI                         N  
Sbjct: 116  NLSWSL-----TMQSITTNTDELMVVEPTNVIDLARKALSASKEAALLAQKCA----NLD 166

Query: 716  XXXXXXXXXXXXXXXPLEEEK-IXXXXXXXXXXXXXXXXXXXXXXQERNCSGNLHLQRKI 892
                            LEE K +                       E   S    +Q+KI
Sbjct: 167  DTVSTGLEPTDLSNFSLEEVKTVRSTRRLERQSKNRRVTKTKEIFHEPYSSRRAGVQKKI 226

Query: 893  TEAFDQDDPLRLFT-GPETK-LLTVNEESDLIMEIQEYLKLEEAKSKLQNQFGREPSLVE 1066
             E FD  DPLRLF  GPETK LLT  EES+LI ++Q+ + LE  K K + QFGR+P+LVE
Sbjct: 227  NEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTLVE 286

Query: 1067 WGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGLSLPDLLQEGSMGLM 1246
            W +AVGLS   +QSQL+SG  SREKLI+AN RMVVHIAK+YQGRGLSL DLLQEGSMGLM
Sbjct: 287  WADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLM 346

Query: 1247 RSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGLLSKVKEAKRTCIQQ 1426
            +SIEKFKPQVGCRFATYAYWWIRQ +RKAIFQHSRTIRLP+N+Y  L KV EAKR+ I +
Sbjct: 347  KSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYIME 406

Query: 1427 GCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTFQEVTADTAIEAPDL 1606
            G H+PTKEE+A   G+T  +LE+LL+ ARMPLS+QQ VWADQ+TTFQE+TAD  +E P+L
Sbjct: 407  GNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETTFQEITADIEVEIPEL 466

Query: 1607 SVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAVFGLSKERVRQLESR 1786
             V KQLMR HV +LL+ILNP+ERKIIRLR+GIEDG+++SLSEIG+VFGLSKERVRQLESR
Sbjct: 467  CVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESR 526

Query: 1787 GLYRLKQCLNSQGLKAYGDLVL 1852
             LY+LKQCL S GL+AY DL++
Sbjct: 527  ALYKLKQCLASHGLEAYADLLV 548


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  476 bits (1226), Expect = e-131
 Identities = 277/574 (48%), Positives = 355/574 (61%), Gaps = 45/574 (7%)
 Frame = +2

Query: 266  MEAARNFLASPPTLSSRTHLRNC------SFTSSSLSVH--------------------- 364
            MEA RN L+SPP+  SRT +++       S +SSS+ +H                     
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 365  ----IQDQHDEGWQSVQLRKDERTSQATLDRRLINAASSPNEENN--DPDKSESKSRMQL 526
                +Q+Q DE    + + K+++TSQAT D R +   +   EE N  D D+       Q 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 527  LHVPGLWYLFKSLE---------AIQSLKSEAENLSNVEAKSVIXXXXXXXXXXXXXXXX 679
            LH P LW L   ++          +QSL ++ E   + E    +                
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 680  XXXXXXXGRNXXXXXXXXXXXXXXXXXPLEEEK-IXXXXXXXXXXXXXXXXXXXXXXQER 856
                   G                   PLEE K +                       E 
Sbjct: 181  AENPKLNGAEFTDISLTSSLGY-----PLEEVKTVRSTRFLERRSKKRKVSKPKVTNHET 235

Query: 857  NCSGNLHLQRKITEAFDQDDPLRLFT-GPET-KLLTVNEESDLIMEIQEYLKLEEAKSKL 1030
              S    +++K++E FD +DPLRLF  GPET KLLT +EE +LI +IQ+ ++LE+ KSKL
Sbjct: 236  YNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL 295

Query: 1031 QNQFGREPSLVEWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGLSL 1210
            Q+QFGREP+L+       LSCR L+S+L+SG  SREKLI+AN R+VVH+AK+YQGRG+ L
Sbjct: 296  QSQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGL 355

Query: 1211 PDLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGLLS 1390
             DLLQEGSMGLM+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y LLS
Sbjct: 356  HDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLS 415

Query: 1391 KVKEAKRTCIQQGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTFQE 1570
            +V EAKR  IQ+G H P KE++A   G+TVEKLE+L+F  RMPLS+QQPVWADQDTTFQE
Sbjct: 416  RVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQE 475

Query: 1571 VTADTAIEAPDLSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAVFG 1750
            +TADT +E PD+SV+KQLMR HVRNLL++LNPKER I+RLRFGIEDG+ +SLSE+G +FG
Sbjct: 476  ITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG 535

Query: 1751 LSKERVRQLESRGLYRLKQCLNSQGLKAYGDLVL 1852
            LSKERVRQLESR LYRLKQ L  +    Y DL++
Sbjct: 536  LSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum lycopersicum]
          Length = 563

 Score =  473 bits (1216), Expect = e-130
 Identities = 237/336 (70%), Positives = 283/336 (84%), Gaps = 2/336 (0%)
 Frame = +2

Query: 848  QERNCSGNLHLQRKITEAFDQDDPLRLFT-GPETK-LLTVNEESDLIMEIQEYLKLEEAK 1021
            +  N SG   ++RK+ E+ D +DPLR+F  GPETK LLT  EES+LI++IQ  +KL+E K
Sbjct: 227  ETNNRSGRPDVRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVK 286

Query: 1022 SKLQNQFGREPSLVEWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRG 1201
             +LQ QF REP+ +EW EA G++ R L+SQL SGK SREKLI+AN RMVVHIAK+YQGRG
Sbjct: 287  HQLQIQFAREPTSLEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRG 346

Query: 1202 LSLPDLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYG 1381
            L+L DLLQEGSMGLM+S+EKFKPQ GCRF TYAYWWIRQ++RKAIFQHSRTIRLP+N+Y 
Sbjct: 347  LNLQDLLQEGSMGLMKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYA 406

Query: 1382 LLSKVKEAKRTCIQQGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTT 1561
            LLSKVK+AKR CI+QG  HPTKE+IASCAGM+VE+L+ LL   R PLS+QQ VW+DQDTT
Sbjct: 407  LLSKVKDAKRECIRQGNRHPTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTT 466

Query: 1562 FQEVTADTAIEAPDLSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGA 1741
            FQE+TAD AIEAP+LSV KQLMR H+R LL++L+PKERKIIRLRFGI DG+ +SLSEIGA
Sbjct: 467  FQEITADNAIEAPELSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGA 526

Query: 1742 VFGLSKERVRQLESRGLYRLKQCLNSQGLKAYGDLV 1849
            VFGLSKERVRQLE+R LY+LKQ LN  GL AY DL+
Sbjct: 527  VFGLSKERVRQLETRALYKLKQNLNKHGLDAYSDLL 562



 Score = 75.1 bits (183), Expect = 1e-10
 Identities = 57/156 (36%), Positives = 77/156 (49%), Gaps = 34/156 (21%)
 Frame = +2

Query: 266 MEAA-RNFLASPPTLSSRTHLRNCSFTSSSLSVHIQ----------------------DQ 376
           MEAA RN L+SPPT S +T LRNCS +   L  H                        +Q
Sbjct: 1   MEAAGRNLLSSPPTFSQKTQLRNCSSSVLMLHEHAAPVLSSVPHTYLGRYVPASAIGPEQ 60

Query: 377 HDEGWQSVQLRKDERTSQATLDRRLINAASSPNEENN--DPDKSESKSRMQLLHVPGLWY 550
           H E    + L K+E+TS AT+DRRL+ AASS  EEN+  D +++ +  ++QLLH PG  Y
Sbjct: 61  HFENRLQLHLVKEEKTSLATIDRRLVEAASSELEENDAVDSEQNINALQVQLLHWPGPSY 120

Query: 551 LFKSL---------EAIQSLKSEAENLSNVEAKSVI 631
            F               + L S+ + L N E  SV+
Sbjct: 121 SFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVV 156


>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum tuberosum]
          Length = 562

 Score =  471 bits (1213), Expect = e-130
 Identities = 237/336 (70%), Positives = 282/336 (83%), Gaps = 2/336 (0%)
 Frame = +2

Query: 848  QERNCSGNLHLQRKITEAFDQDDPLRLFT-GPETK-LLTVNEESDLIMEIQEYLKLEEAK 1021
            QE N SG   ++RK+ E+ D +DPLR+F  GPETK LLT  EES+LI++IQ  +KL+E K
Sbjct: 226  QETNRSGRPDVRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVK 285

Query: 1022 SKLQNQFGREPSLVEWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRG 1201
             +LQ QF  EP+ VEW EA G++ R L+SQL SGK SREKLI+AN RMVVHIAK+YQGRG
Sbjct: 286  HQLQIQFAHEPTSVEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRG 345

Query: 1202 LSLPDLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYG 1381
            L+L DLLQEGSMGLM+S+EKFKPQ GCRF TYAYWWIRQ++RKAIFQHSRTIRLP+N+Y 
Sbjct: 346  LNLQDLLQEGSMGLMKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYA 405

Query: 1382 LLSKVKEAKRTCIQQGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTT 1561
            LLSKVK+AK+ CIQQG  +PTKE+IASCAGM+VE+L+ LL   R PLS+QQ VW+DQDTT
Sbjct: 406  LLSKVKDAKKECIQQGNRYPTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTT 465

Query: 1562 FQEVTADTAIEAPDLSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGA 1741
            FQE+TAD AIEAP+LSV KQLMR H+R LL++L+PKERKIIRLRFGI DG+ +SLSEIG 
Sbjct: 466  FQEITADNAIEAPELSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGT 525

Query: 1742 VFGLSKERVRQLESRGLYRLKQCLNSQGLKAYGDLV 1849
            VFGLSKERVRQLE+R LY+LKQ LN  GL AY DL+
Sbjct: 526  VFGLSKERVRQLETRALYKLKQNLNKHGLDAYSDLL 561



 Score = 70.1 bits (170), Expect = 4e-09
 Identities = 55/156 (35%), Positives = 76/156 (48%), Gaps = 34/156 (21%)
 Frame = +2

Query: 266 MEAA-RNFLASPPTLSSRTHLRNCSFTSSSLSVHIQ----------------------DQ 376
           MEAA RN L+SPPT S +T LRNCS +   L  H                        +Q
Sbjct: 1   MEAAGRNLLSSPPTFSQKTQLRNCSSSVLMLHEHAAPVLSSVPHAYLGRHVPASAIGPEQ 60

Query: 377 HDEGWQSVQLRKDERTSQATLDRRLINAASSPNEENN--DPDKSESKSRMQLLHVPGLWY 550
             E    + L K+E+TS AT+DRRL++AASS  EEN+  D +++ +  ++QLL  PG  Y
Sbjct: 61  QFENRLQLHLVKEEKTSLATIDRRLVDAASSELEENDAVDSEQNINALQVQLLRCPGPSY 120

Query: 551 LFKSL---------EAIQSLKSEAENLSNVEAKSVI 631
            F               + L S+ + L N E  SV+
Sbjct: 121 SFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVV 156


>ref|XP_002326192.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  456 bits (1174), Expect = e-125
 Identities = 229/331 (69%), Positives = 275/331 (83%), Gaps = 2/331 (0%)
 Frame = +2

Query: 863  SGNLHLQRKITEAFDQDDPLRLFT-GPETK-LLTVNEESDLIMEIQEYLKLEEAKSKLQN 1036
            S +  +Q+++++ FD +DPLRLF  GPETK LLT  EE +LI +IQ+ + LE  K++L++
Sbjct: 204  SKSADIQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLES 263

Query: 1037 QFGREPSLVEWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGLSLPD 1216
            QFGREP+LVEW +AVGLSC  L+ QL+SG  SREKLI+AN RMVVHIAK+YQ RGL L D
Sbjct: 264  QFGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQD 323

Query: 1217 LLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGLLSKV 1396
            LLQEG++GLM+SIEKFKPQ GCRFATYAYWWIRQ I KAIFQHSRTIRLP+N+YGLL KV
Sbjct: 324  LLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKV 383

Query: 1397 KEAKRTCIQQGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTFQEVT 1576
             EAKR+ IQ+G H PT EEIA   G+ ++KLEKLL   R PLS+QQ VW+DQ+TTFQE+T
Sbjct: 384  MEAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEIT 443

Query: 1577 ADTAIEAPDLSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAVFGLS 1756
            ADT IE PD+SV KQLMR H+R LL+IL+ KER+IIRLRFGIEDG+Q+SLSEIG VFGLS
Sbjct: 444  ADTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLS 503

Query: 1757 KERVRQLESRGLYRLKQCLNSQGLKAYGDLV 1849
            KERVRQLESR LY+LKQC+ S GL AY DL+
Sbjct: 504  KERVRQLESRALYKLKQCVGSHGLDAYADLL 534


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  456 bits (1173), Expect = e-125
 Identities = 229/331 (69%), Positives = 275/331 (83%), Gaps = 2/331 (0%)
 Frame = +2

Query: 863  SGNLHLQRKITEAFDQDDPLRLFT-GPETK-LLTVNEESDLIMEIQEYLKLEEAKSKLQN 1036
            S +  +Q+++++ FD +DPLRLF  GPETK LLT  EE +LI +IQ+ + LE  K++L++
Sbjct: 204  SKSADVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLES 263

Query: 1037 QFGREPSLVEWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGLSLPD 1216
            QFGREP+LVEW +AVGLSC  L+ QL+SG  SREKLI+AN RMVVHIAK+YQ RGL L D
Sbjct: 264  QFGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQD 323

Query: 1217 LLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGLLSKV 1396
            LLQEG++GLM+SIEKFKPQ GCRFATYAYWWIRQ I KAIFQHSRTIRLP+N+YGLL KV
Sbjct: 324  LLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKV 383

Query: 1397 KEAKRTCIQQGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTFQEVT 1576
             EAKR+ IQ+G H PT EEIA   G+ ++KLEKLL   R PLS+QQ VW+DQ+TTFQE+T
Sbjct: 384  MEAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEIT 443

Query: 1577 ADTAIEAPDLSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAVFGLS 1756
            ADT IE PD+SV KQLMR H+R LL+IL+ KER+IIRLRFGIEDG+Q+SLSEIG VFGLS
Sbjct: 444  ADTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLS 503

Query: 1757 KERVRQLESRGLYRLKQCLNSQGLKAYGDLV 1849
            KERVRQLESR LY+LKQC+ S GL AY DL+
Sbjct: 504  KERVRQLESRALYKLKQCVGSHGLDAYADLL 534


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 554

 Score =  452 bits (1164), Expect = e-124
 Identities = 229/336 (68%), Positives = 275/336 (81%), Gaps = 2/336 (0%)
 Frame = +2

Query: 851  ERNCSGNLHLQRKITEAFDQDDPLRLFT-GPETK-LLTVNEESDLIMEIQEYLKLEEAKS 1024
            E + S +  L+RK  E  + +DPLRLF  GPET+ LLT+ EE++LI  +Q+  KLE  KS
Sbjct: 219  ENSSSNSSDLRRKYREGLNPNDPLRLFLWGPETRQLLTLKEETELIARVQDVFKLEAVKS 278

Query: 1025 KLQNQFGREPSLVEWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGL 1204
            +LQ+QFGREP+L+EW EAVG+SC+ LQSQL  G  SREKLI++N RMVVHIAK+YQGRGL
Sbjct: 279  RLQSQFGREPTLIEWAEAVGISCQMLQSQLRCGTSSREKLIYSNLRMVVHIAKQYQGRGL 338

Query: 1205 SLPDLLQEGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGL 1384
             L DLLQEGSMGLM+S+EKFKPQ GCRFATYAYWW+RQ IRKAIFQHSRTIRLP+N+Y L
Sbjct: 339  GLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWVRQTIRKAIFQHSRTIRLPENVYTL 398

Query: 1385 LSKVKEAKRTCIQQGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTF 1564
            L KV EAK++ IQ+G  +P++EE+A   GM+VEKL KLL+  RMP+S+QQ VWADQDTTF
Sbjct: 399  LGKVLEAKKSYIQEGNQNPSREELARRVGMSVEKLGKLLYCTRMPVSMQQTVWADQDTTF 458

Query: 1565 QEVTADTAIEAPDLSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAV 1744
            QEVTADT IE PDLSV KQLMR HVRNLL  L  +ER+IIRLR+GIEDG+QRSL+EIG +
Sbjct: 459  QEVTADTGIEIPDLSVAKQLMRQHVRNLLHTLEKRERQIIRLRYGIEDGKQRSLTEIGEI 518

Query: 1745 FGLSKERVRQLESRGLYRLKQCLNSQGLKAYGDLVL 1852
            FGLSKERVRQLESR   +LK+ L SQGL AY  L++
Sbjct: 519  FGLSKERVRQLESRAFLKLKESLGSQGLGAYAPLLV 554


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 575

 Score =  449 bits (1156), Expect = e-123
 Identities = 224/329 (68%), Positives = 272/329 (82%), Gaps = 2/329 (0%)
 Frame = +2

Query: 872  LHLQRKITEAFDQDDPLRLFT-GPETK-LLTVNEESDLIMEIQEYLKLEEAKSKLQNQFG 1045
            L  ++K  E  DQDDPLRLF  GPETK LLT+ +ES LI +IQ+ L+LEE K+ LQ+QFG
Sbjct: 247  LRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFG 306

Query: 1046 REPSLVEWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGLSLPDLLQ 1225
            REP++ EW E  GL+CR LQSQL+SG  SREKLI AN RMVVH+AK YQGRGLSL DLLQ
Sbjct: 307  REPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQ 366

Query: 1226 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGLLSKVKEA 1405
            EGSMGLM+S+EKF P  G RF  YA+WWIRQAIRKA+F+HSRTIRLP+ ++ LL KV EA
Sbjct: 367  EGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEA 426

Query: 1406 KRTCIQQGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTFQEVTADT 1585
            K+  IQ+G  HPTKEE+A   G+TVEK++KLLF+AR+P+S+QQ VWADQ+TTFQE+TAD 
Sbjct: 427  KKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQEITADP 486

Query: 1586 AIEAPDLSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAVFGLSKER 1765
             +EA D++VEKQLMR HV N+LS+L+PKER+IIRLR+G EDG+Q+SLSEIG +FGLSKER
Sbjct: 487  TVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKER 546

Query: 1766 VRQLESRGLYRLKQCLNSQGLKAYGDLVL 1852
            VRQLE R LY+LK+CL  QGL AY DL+L
Sbjct: 547  VRQLEIRALYKLKKCLVKQGLDAYVDLLL 575


>gb|ESW16353.1| hypothetical protein PHAVU_007G149600g [Phaseolus vulgaris]
          Length = 582

 Score =  447 bits (1149), Expect = e-122
 Identities = 224/326 (68%), Positives = 268/326 (82%), Gaps = 2/326 (0%)
 Frame = +2

Query: 881  QRKITEAFDQDDPLRLFT-GPETK-LLTVNEESDLIMEIQEYLKLEEAKSKLQNQFGREP 1054
            ++KI E FDQ+D LR+F  GPETK LLT+ +ES+LI +IQ+ LKLEE K++LQ+QFGREP
Sbjct: 257  EKKINEEFDQNDTLRMFLRGPETKQLLTLEQESELISKIQDLLKLEELKTRLQSQFGREP 316

Query: 1055 SLVEWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGLSLPDLLQEGS 1234
            ++ EW E  GL+CR L SQL  G  SREKLI AN RMVVH+AK YQGRGLSL DLLQEGS
Sbjct: 317  TMAEWAEGAGLNCRMLHSQLRHGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGS 376

Query: 1235 MGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGLLSKVKEAKRT 1414
            MGLM+S+EKF P  G RF  YA+WWIRQAIRKA+F+HSRTIRLP+ +Y  L K+ EAK+ 
Sbjct: 377  MGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVYIQLGKIMEAKKL 436

Query: 1415 CIQQGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTFQEVTADTAIE 1594
             IQ+G  HPTKEE+A   G+TVEK++KLL+ AR+P+S+QQ VWADQDTTFQE+TAD  +E
Sbjct: 437  YIQEGNLHPTKEELARRVGITVEKIDKLLYAARIPISMQQTVWADQDTTFQEITADPTVE 496

Query: 1595 APDLSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAVFGLSKERVRQ 1774
            A DLSVEKQLMR HV N+L+IL PKERKIIRLR+G EDG+QRSLSEIG +FGLSKERVRQ
Sbjct: 497  ATDLSVEKQLMRRHVLNVLTILRPKERKIIRLRYGFEDGEQRSLSEIGDIFGLSKERVRQ 556

Query: 1775 LESRGLYRLKQCLNSQGLKAYGDLVL 1852
            LE R LY+LK+CL  QGL AY DL+L
Sbjct: 557  LEIRALYKLKKCLVKQGLDAYVDLLL 582


>ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Glycine
            max]
          Length = 574

 Score =  446 bits (1146), Expect = e-122
 Identities = 224/329 (68%), Positives = 272/329 (82%), Gaps = 2/329 (0%)
 Frame = +2

Query: 872  LHLQRKITEAFDQDDPLRLFT-GPETK-LLTVNEESDLIMEIQEYLKLEEAKSKLQNQFG 1045
            L +++K  E  DQ+DPL  F  GPETK LLT+ +ES LI +IQ+ L+LEE K+KLQ+QFG
Sbjct: 246  LRVEKKKNEELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLRLEEVKTKLQSQFG 305

Query: 1046 REPSLVEWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGLSLPDLLQ 1225
            REP++ EW E VGL+CR L +QL SG  SREKLI AN RMVVH+AK YQGRGLSL DLLQ
Sbjct: 306  REPTMAEWAEGVGLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQ 365

Query: 1226 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGLLSKVKEA 1405
            EGSMGLM+S+EKF P VG RF  YA+WWIRQAIRKA+F+HSRTIRLP+ ++ LL KV EA
Sbjct: 366  EGSMGLMKSVEKFNPLVGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEA 425

Query: 1406 KRTCIQQGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTFQEVTADT 1585
            K+  IQ+G  HPTKEE+A   G+TVEK++KLLF+AR+P+S+QQ VWADQ+TTFQE+TAD 
Sbjct: 426  KKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQEITADP 485

Query: 1586 AIEAPDLSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAVFGLSKER 1765
             +EA D+SVEKQLMR HV N+LSIL+PKER+IIRLR+G EDG+Q+SLSEIG +FGLSKER
Sbjct: 486  TVEATDVSVEKQLMRQHVLNVLSILHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKER 545

Query: 1766 VRQLESRGLYRLKQCLNSQGLKAYGDLVL 1852
            VRQLE R LY+LK+CL  QGL AY DL+L
Sbjct: 546  VRQLEIRALYKLKKCLVKQGLDAYVDLLL 574


>ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 554

 Score =  444 bits (1141), Expect = e-121
 Identities = 220/329 (66%), Positives = 271/329 (82%), Gaps = 2/329 (0%)
 Frame = +2

Query: 872  LHLQRKITEAFDQDDPLRLF-TGPETK-LLTVNEESDLIMEIQEYLKLEEAKSKLQNQFG 1045
            L L++K+ E +D +DPLRLF +GPE++ LLT  EES LI ++Q+  +LEE K +LQ Q  
Sbjct: 226  LRLEKKLKEGYDPNDPLRLFLSGPESRQLLTREEESQLITQLQDLSRLEEVKIRLQTQLR 285

Query: 1046 REPSLVEWGEAVGLSCRALQSQLYSGKLSREKLIHANYRMVVHIAKKYQGRGLSLPDLLQ 1225
            REP+L EW +AVG SC ALQ+QL+    S+EKL HAN RMVVHIAK YQGRGLSL DL Q
Sbjct: 286  REPTLAEWADAVGHSCYALQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQ 345

Query: 1226 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYGLLSKVKEA 1405
            EGS GLM+SIEKFKP+ GCRF TYAYWWIR A+RKAIF HSRTIRLP+N+Y LL KV EA
Sbjct: 346  EGSTGLMKSIEKFKPEAGCRFGTYAYWWIRHAVRKAIFLHSRTIRLPENLYTLLGKVIEA 405

Query: 1406 KRTCIQQGCHHPTKEEIASCAGMTVEKLEKLLFTARMPLSIQQPVWADQDTTFQEVTADT 1585
            K++ IQ+G  HPTKEE+A   G+T+EK++ LLF +R P+S+QQ VWADQDTTFQE+TAD+
Sbjct: 406  KKSYIQEGNLHPTKEELARKVGITIEKMDNLLFASRNPISMQQTVWADQDTTFQEITADS 465

Query: 1586 AIEAPDLSVEKQLMRLHVRNLLSILNPKERKIIRLRFGIEDGQQRSLSEIGAVFGLSKER 1765
            AIE PD++V KQLMR+HV NLL+IL+PKER IIRLRFGIEDG++++LS+IG VFGL+KER
Sbjct: 466  AIEIPDVTVSKQLMRMHVHNLLNILSPKERGIIRLRFGIEDGEEKTLSDIGKVFGLTKER 525

Query: 1766 VRQLESRGLYRLKQCLNSQGLKAYGDLVL 1852
            VRQLESR L +L+QCL SQGL AY DL++
Sbjct: 526  VRQLESRALLKLRQCLESQGLDAYTDLLV 554