BLASTX nr result
ID: Rauwolfia21_contig00009772
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00009772
(310 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXC13109.1| Retrovirus-related Pol polyprotein from transposo... 106 4e-21
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera] 101 9e-20
gb|EXC27155.1| Retrovirus-related Pol polyprotein from transposo... 99 6e-19
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera] 96 4e-18
gb|ADJ18449.1| gag/pol protein [Bryonia dioica] 96 6e-18
gb|EXB35423.1| Retrovirus-related Pol polyprotein from transposo... 93 3e-17
gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-... 84 1e-14
emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group] 84 1e-14
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 84 2e-14
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-... 84 3e-14
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 84 3e-14
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 83 3e-14
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 83 3e-14
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 82 1e-13
gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subc... 82 1e-13
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc... 81 1e-13
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 81 1e-13
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group] 81 1e-13
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc... 80 2e-13
dbj|BAA22288.1| polyprotein [Oryza australiensis] 80 3e-13
>gb|EXC13109.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis]
Length = 316
Score = 106 bits (264), Expect = 4e-21
Identities = 51/83 (61%), Positives = 63/83 (75%)
Frame = -1
Query: 250 NNAQAEPSNKRKRMTSSNDSYLWHLRLGHINPNRIQRLIHDGPLGSLRLEEWPQCESCLM 71
N+ AEP NK+++++ N++YLWHLRLGHIN RI+RLI DGPL L++ E P ESCL
Sbjct: 187 NDLVAEPKNKKQKISHDNNTYLWHLRLGHINLIRIERLIKDGPLRQLKVGEHPVGESCLE 246
Query: 70 GKMTKRSFTQKTERAKEVLDLVH 2
GKMTKR FT K ERAKE L L+H
Sbjct: 247 GKMTKRHFTAKGERAKESLQLIH 269
>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
Length = 1544
Score = 101 bits (252), Expect = 9e-20
Identities = 52/109 (47%), Positives = 68/109 (62%), Gaps = 6/109 (5%)
Frame = -1
Query: 310 LCTGFMHGNLFYIDPT------NTHANNAQAEPSNKRKRMTSSNDSYLWHLRLGHINPNR 149
+C+G + +L+ + T N+ NN KRKR + +YLWHLRLGHIN +R
Sbjct: 716 ICSGSLIDSLYILKVTPELQLTNSEVNNFDIVAPLKRKRPIELSYTYLWHLRLGHINLDR 775
Query: 148 IQRLIHDGPLGSLRLEEWPQCESCLMGKMTKRSFTQKTERAKEVLDLVH 2
I L+ DGPL SL++E P CESCL GKMTKR F K RA +VL+L+H
Sbjct: 776 ISLLVKDGPLSSLKVEALPTCESCLEGKMTKRPFPLKGNRANDVLELIH 824
>gb|EXC27155.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis]
Length = 391
Score = 99.0 bits (245), Expect = 6e-19
Identities = 43/79 (54%), Positives = 60/79 (75%)
Frame = -1
Query: 238 AEPSNKRKRMTSSNDSYLWHLRLGHINPNRIQRLIHDGPLGSLRLEEWPQCESCLMGKMT 59
AEP NK+++++ N++Y+WHLRLGHIN + I+RL+ DGPL L++ E P CESCL KMT
Sbjct: 260 AEPKNKKQKISHDNNTYMWHLRLGHINLSMIERLVKDGPLSELKVGELPVCESCLESKMT 319
Query: 58 KRSFTQKTERAKEVLDLVH 2
KR FT K ++A + L L+H
Sbjct: 320 KRPFTVKGKKATKPLQLIH 338
>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
Length = 1285
Score = 96.3 bits (238), Expect = 4e-18
Identities = 50/109 (45%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Frame = -1
Query: 310 LCTGFMHGNLFYIDPT------NTHANNAQAEPSNKRKRMTSSNDSYLWHLRLGHINPNR 149
+C+G + L+ + T N+ NN KRK + +YLWHLRLGHIN +R
Sbjct: 364 ICSGSLIDGLYILKVTPELQLTNSEVNNFDIVAPLKRKCPIELSYTYLWHLRLGHINLDR 423
Query: 148 IQRLIHDGPLGSLRLEEWPQCESCLMGKMTKRSFTQKTERAKEVLDLVH 2
I L+ DGPL SL++E P CESCL GKMT R F K RA +VL+L+H
Sbjct: 424 ISLLVKDGPLSSLKVEALPTCESCLEGKMTNRPFPLKGNRANDVLELIH 472
>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
Length = 1292
Score = 95.5 bits (236), Expect = 6e-18
Identities = 53/108 (49%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
Frame = -1
Query: 310 LCTGFMHGNLFYIDPT--NTHANNAQ---AEPSNKRKRMTSSNDSYLWHLRLGHINPNRI 146
+C+ NL+ + PT N N E NK+++++S+ +YLWHLRLGHIN NRI
Sbjct: 400 ICSAIRENNLYKLRPTRANVVLNTEMFRTLETQNKKQKVSSN--AYLWHLRLGHINLNRI 457
Query: 145 QRLIHDGPLGSLRLEEWPQCESCLMGKMTKRSFTQKTERAKEVLDLVH 2
+RL+ G L L P CESCL GKMTKRSFT K RAK L+LVH
Sbjct: 458 ERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVH 505
>gb|EXB35423.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis]
Length = 443
Score = 93.2 bits (230), Expect = 3e-17
Identities = 48/105 (45%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
Frame = -1
Query: 304 TGFMHGNLFYIDPTNTHANNAQ----AEPSNKRKRMTSSNDSYLWHLRLGHINPNRIQRL 137
+G + L+ I P N + AEP NK+++++ N++YLWHL LGHIN NRI+RL
Sbjct: 307 SGRLDDGLYCIKPIPNSLLNTEMFRVAEPKNKKQKISHENNTYLWHLGLGHINLNRIERL 366
Query: 136 IHDGPLGSLRLEEWPQCESCLMGKMTKRSFTQKTERAKEVLDLVH 2
+ DGPL L + E C SCL GKMTKR FT K + A + L +H
Sbjct: 367 VKDGPLRELTVGELLVCRSCLEGKMTKRPFTAKGKIATKPLQPIH 411
>gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550176|gb|ABA92973.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 591
Score = 84.3 bits (207), Expect = 1e-14
Identities = 39/74 (52%), Positives = 50/74 (67%)
Frame = -1
Query: 223 KRKRMTSSNDSYLWHLRLGHINPNRIQRLIHDGPLGSLRLEEWPQCESCLMGKMTKRSFT 44
KR+R N +++WH RLGHIN R+++L DG L S E + CESCL+GKMTK FT
Sbjct: 314 KRQRPNDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFT 373
Query: 43 QKTERAKEVLDLVH 2
+ ERA E+L LVH
Sbjct: 374 GQNERASELLGLVH 387
>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
Length = 948
Score = 84.3 bits (207), Expect = 1e-14
Identities = 39/74 (52%), Positives = 51/74 (68%)
Frame = -1
Query: 223 KRKRMTSSNDSYLWHLRLGHINPNRIQRLIHDGPLGSLRLEEWPQCESCLMGKMTKRSFT 44
KR+R N +++WH RLGHIN R+++L DG L S E + CESCL+GKMTK FT
Sbjct: 422 KRQRPNDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFT 481
Query: 43 QKTERAKEVLDLVH 2
++ERA E+L LVH
Sbjct: 482 GQSERASELLALVH 495
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 84.0 bits (206), Expect = 2e-14
Identities = 46/108 (42%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Frame = -1
Query: 307 CTGFMHGNLFYIDP---TNTHANNAQAEPSNKRKRMTSSND---SYLWHLRLGHINPNRI 146
C F ++FY H N N R + SND ++LWH RLGHIN I
Sbjct: 37 CCSFDRDDMFYGSAPLDNGLHVLNQSMPIYNIRTKKFKSNDLNPTFLWHCRLGHINEKHI 96
Query: 145 QRLIHDGPLGSLRLEEWPQCESCLMGKMTKRSFTQKTERAKEVLDLVH 2
Q+L DG L S E + CESCL+GKMTK FT +ERA ++L L+H
Sbjct: 97 QKLHSDGLLNSFDYESYETCESCLLGKMTKAPFTGHSERASDLLGLIH 144
>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550379|gb|ABA93176.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 938
Score = 83.6 bits (205), Expect = 3e-14
Identities = 38/74 (51%), Positives = 51/74 (68%)
Frame = -1
Query: 223 KRKRMTSSNDSYLWHLRLGHINPNRIQRLIHDGPLGSLRLEEWPQCESCLMGKMTKRSFT 44
KR+R N +++WH RLGHIN R+++L DG L S E + CESCL+GKMTK FT
Sbjct: 312 KRQRPNDLNPTFIWHCRLGHINERRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFT 371
Query: 43 QKTERAKEVLDLVH 2
++E+A E+L LVH
Sbjct: 372 GQSEKASELLGLVH 385
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 83.6 bits (205), Expect = 3e-14
Identities = 38/74 (51%), Positives = 51/74 (68%)
Frame = -1
Query: 223 KRKRMTSSNDSYLWHLRLGHINPNRIQRLIHDGPLGSLRLEEWPQCESCLMGKMTKRSFT 44
KR+R N +++WH RLGHIN R++++ DG L S E + CESCL+GKMTK FT
Sbjct: 403 KRQRPNDLNPTFIWHCRLGHINEKRMEKIHRDGLLHSFDFESFETCESCLLGKMTKAPFT 462
Query: 43 QKTERAKEVLDLVH 2
++ERA E+L LVH
Sbjct: 463 GQSERASELLALVH 476
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 83.2 bits (204), Expect = 3e-14
Identities = 39/74 (52%), Positives = 51/74 (68%)
Frame = -1
Query: 223 KRKRMTSSNDSYLWHLRLGHINPNRIQRLIHDGPLGSLRLEEWPQCESCLMGKMTKRSFT 44
KR+R + N +++WH LGHIN RI++L DG L S E + CESCL+GKMTK FT
Sbjct: 392 KRQRPNNLNPTFIWHCCLGHINEKRIEKLHRDGLLHSFDFESFKTCESCLLGKMTKAPFT 451
Query: 43 QKTERAKEVLDLVH 2
++ERA E+L LVH
Sbjct: 452 GQSERASELLGLVH 465
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 83.2 bits (204), Expect = 3e-14
Identities = 39/74 (52%), Positives = 51/74 (68%)
Frame = -1
Query: 223 KRKRMTSSNDSYLWHLRLGHINPNRIQRLIHDGPLGSLRLEEWPQCESCLMGKMTKRSFT 44
KR+R + N +++WH LGHIN RI++L DG L S E + CESCL+GKMTK FT
Sbjct: 305 KRQRPNNLNPTFIWHCCLGHINEKRIEKLHRDGLLHSFDFESFKTCESCLLGKMTKAPFT 364
Query: 43 QKTERAKEVLDLVH 2
++ERA E+L LVH
Sbjct: 365 GQSERASELLGLVH 378
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 81.6 bits (200), Expect = 1e-13
Identities = 36/74 (48%), Positives = 51/74 (68%)
Frame = -1
Query: 223 KRKRMTSSNDSYLWHLRLGHINPNRIQRLIHDGPLGSLRLEEWPQCESCLMGKMTKRSFT 44
KR R + N +++WH RLGHI+ R+++L DG L S LE + CESC++GKMTK FT
Sbjct: 515 KRLRPNNMNSTFIWHCRLGHISEKRMKKLHDDGILNSFDLESFETCESCILGKMTKTPFT 574
Query: 43 QKTERAKEVLDLVH 2
+ ERA ++L L+H
Sbjct: 575 GRNERASDLLALIH 588
>gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 829
Score = 81.6 bits (200), Expect = 1e-13
Identities = 38/74 (51%), Positives = 50/74 (67%)
Frame = -1
Query: 223 KRKRMTSSNDSYLWHLRLGHINPNRIQRLIHDGPLGSLRLEEWPQCESCLMGKMTKRSFT 44
KR+ N +++WH RLGHIN R+++L DG L S E + CESCL+GKMTK FT
Sbjct: 371 KRQLPNDLNPTFIWHCRLGHINEKRMKKLHRDGLLHSFDFESFETCESCLLGKMTKAPFT 430
Query: 43 QKTERAKEVLDLVH 2
++ERA E+L LVH
Sbjct: 431 GQSERASELLGLVH 444
>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 81.3 bits (199), Expect = 1e-13
Identities = 38/74 (51%), Positives = 50/74 (67%)
Frame = -1
Query: 223 KRKRMTSSNDSYLWHLRLGHINPNRIQRLIHDGPLGSLRLEEWPQCESCLMGKMTKRSFT 44
KR+ N +++WH RLGHIN R+++L DG L SL E + CESCL+GKMTK FT
Sbjct: 903 KRQGPNDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSLDFESFETCESCLLGKMTKAPFT 962
Query: 43 QKTERAKEVLDLVH 2
++ER E+L LVH
Sbjct: 963 GQSERTSELLVLVH 976
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 81.3 bits (199), Expect = 1e-13
Identities = 37/74 (50%), Positives = 50/74 (67%)
Frame = -1
Query: 223 KRKRMTSSNDSYLWHLRLGHINPNRIQRLIHDGPLGSLRLEEWPQCESCLMGKMTKRSFT 44
KR+ N +++WH RLGHIN R+++L DG L S E + CESCL+GKMTK FT
Sbjct: 519 KRQHPNDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFT 578
Query: 43 QKTERAKEVLDLVH 2
+++RA E+L LVH
Sbjct: 579 GQSKRASELLGLVH 592
>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 81.3 bits (199), Expect = 1e-13
Identities = 37/74 (50%), Positives = 50/74 (67%)
Frame = -1
Query: 223 KRKRMTSSNDSYLWHLRLGHINPNRIQRLIHDGPLGSLRLEEWPQCESCLMGKMTKRSFT 44
KR+ N +++WH RLGHIN R+++L DG L S E + CESCL+GKMTK FT
Sbjct: 519 KRQHPNDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFT 578
Query: 43 QKTERAKEVLDLVH 2
+++RA E+L LVH
Sbjct: 579 GQSKRASELLGLVH 592
>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 80.5 bits (197), Expect = 2e-13
Identities = 37/74 (50%), Positives = 50/74 (67%)
Frame = -1
Query: 223 KRKRMTSSNDSYLWHLRLGHINPNRIQRLIHDGPLGSLRLEEWPQCESCLMGKMTKRSFT 44
KR+R N +++WH LGHIN R+++L DG L S E + CESCL+GKMTK FT
Sbjct: 176 KRQRPNDLNPTFIWHCHLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFT 235
Query: 43 QKTERAKEVLDLVH 2
++ERA E+L LV+
Sbjct: 236 GQSERASELLGLVY 249
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 80.1 bits (196), Expect = 3e-13
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Frame = -1
Query: 307 CTGFMHGNLFYIDP--TNTHANNAQAEP----SNKRKRMTSSNDSYLWHLRLGHINPNRI 146
C+ ++ ++ P + N +A P + +R+ N +++WH RLGHIN R+
Sbjct: 393 CSIYLRDMFYFHAPLVNGLYVLNLEASPIYNINTERQLSNDINPTFIWHCRLGHINKKRM 452
Query: 145 QRLIHDGPLGSLRLEEWPQCESCLMGKMTKRSFTQKTERAKEVLDLVH 2
++L DG L S E + CESCL+GKMTK FT +ERA ++L LVH
Sbjct: 453 EKLHKDGLLHSFDFESFETCESCLLGKMTKAPFTGHSERASDLLALVH 500