BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00009505
         (4040 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...  1866   0.0  
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...  1860   0.0  
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...  1835   0.0  
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub...  1825   0.0  
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1781   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1759   0.0  
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...  1710   0.0  
gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...  1689   0.0  
gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlise...  1687   0.0  
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...  1686   0.0  
gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus pe...  1674   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1652   0.0  
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...  1647   0.0  
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub...  1640   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...  1637   0.0  
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a...  1632   0.0  
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV a...  1631   0.0  
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...  1626   0.0  
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...  1618   0.0  
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n...  1609   0.0  

>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score = 1866 bits (4833), Expect = 0.0
 Identities = 902/1160 (77%), Positives = 1013/1160 (87%), Gaps = 1/1160 (0%)
 Frame = -2

Query: 3772 ELGEDXXXXXXXXXXXXXFEQYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSK 3593
            ELGE              FE+YGLISHQINSYNDFI YG+Q+VFDSVGEI +EPGYDPSK
Sbjct: 60   ELGETYLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSK 119

Query: 3592 RGDGDWKYASIKFGKVNVERPKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVET 3413
            RGDGDWK+AS+KFGKV +ERPKFW+GEKFSA+GG+E+L+LLPRHARLQNMTYS R++VET
Sbjct: 120  RGDGDWKHASVKFGKVTLERPKFWAGEKFSADGGKEYLDLLPRHARLQNMTYSARIMVET 179

Query: 3412 HVQVYTKKLVRSDKFKTGTEQYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDCD 3233
            HVQVYTKKLVRSDKFKTG +Q+VDKE E EDKRD++IGRIPVMV SELCWM+  +K DC+
Sbjct: 180  HVQVYTKKLVRSDKFKTGVDQFVDKECEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCE 239

Query: 3232 FDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFEN 3053
            FDHGGYFIVKGAEKTFIAQEQ+CL+RLW+S++PTWM  YRP  KRKRVY+KL +T + E+
Sbjct: 240  FDHGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEH 299

Query: 3052 MGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDADK 2873
            + GGEK LSVY ++ EMP+W+LFFALG SSD+EVVNLID+DI+DT IVN L+ASI++ADK
Sbjct: 300  IKGGEKALSVY-ILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADK 358

Query: 2872 KCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCLL 2693
             C+ FRKGK AL ++++L+KNCKFPP ESVEECI  +LFP+L GFKQKARFLGYMVKCLL
Sbjct: 359  NCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLL 418

Query: 2692 EAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQIE 2513
             ++ GRRK+DNRDDFRNK            L+ H+KHAERRMVKAMQRDLYGDR++Q IE
Sbjct: 419  HSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIE 478

Query: 2512 HYLDASIVTNGLSRAFSTGAWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSYT 2333
            HYLDASI+TNGLSRAFSTG W HPYKRMERVSGVVATLR+TNPLQMTADMRK+RQQV+YT
Sbjct: 479  HYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYT 538

Query: 2332 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLFDCGMNEL 2153
            G+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLAS+GLVST  L+P L+ LF CGM +L
Sbjct: 539  GKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKL 598

Query: 2152 VDDTSSLLLGEHKIFLDGEWVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHREVRI 1973
            VDD ++ L G+ K+ LDGEWVG CEDS  FV +LR  RR NEVPHQVE+K D    EVRI
Sbjct: 599  VDDCATSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRI 658

Query: 1972 FSDAGRILRPLLVVENLRKIRFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGIGYLF 1793
            FSD+GRILRPLLVV NL+KI+ LKGGD  FQ+LLD            EDC TAWG+ Y+ 
Sbjct: 659  FSDSGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIEFIGPEEEEDCRTAWGVEYIL 718

Query: 1792 NADKENPQRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPS 1613
             ADKENP  +YTHCELDMSFLLGLSCGIIP+ANHDHARRVLYQSEKHSQQAIGFST NP+
Sbjct: 719  KADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 778

Query: 1612 IRTDTNIHQLYYPQRPLFRTILSECLGKSTYTRH-KGMLPRPEYYNGQCAIVAVNVHLGY 1436
             R DTN HQLYYPQRPLFRT+L++ LGK   T++ KGMLPRPEY+NGQCAIVAVNVHLGY
Sbjct: 779  NRVDTNTHQLYYPQRPLFRTMLADSLGKPKCTQYQKGMLPRPEYFNGQCAIVAVNVHLGY 838

Query: 1435 NQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIGRVDS 1256
            NQEDSLVMNRASLERGMFRSEH+RSYKAEVDNKE   KK K EDS+NFGK QSKIGRVDS
Sbjct: 839  NQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDS 898

Query: 1255 LDDDGFPYIGANLQTGDIVIGKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNFAVVS 1076
            LDDDGFP+IGANLQ+GDI+IGK+AESG D+SVKLKHTERGMVQKV+LSAND+GKNFAVVS
Sbjct: 899  LDDDGFPFIGANLQSGDIIIGKFAESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVS 958

Query: 1075 LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPGQLL 896
            LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPSRQTPGQLL
Sbjct: 959  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 1018

Query: 895  EAALGKGIAVGGVLKHATPFSALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRSLVFM 716
            EAALGKGIA+GG  K+ATPFS LSVDAI +QL+  GF+RWG+ERVYNGRTGEM+ SL+FM
Sbjct: 1019 EAALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFM 1078

Query: 715  GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 536
            GPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL
Sbjct: 1079 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1138

Query: 535  HERLFKLSDCSQIHICRKCKNMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASVPYGAK 356
            HERLF LSD SQ+HIC KCKNMANVIQR V GG K+RGPFCR C+S E IVK +VPYGAK
Sbjct: 1139 HERLFTLSDSSQMHICGKCKNMANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGAK 1197

Query: 355  LLAQELFSMNISLKFETEVC 296
            LL QELFSM ISLKF+TE+C
Sbjct: 1198 LLCQELFSMGISLKFDTEIC 1217


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
            lycopersicum]
          Length = 1217

 Score = 1860 bits (4818), Expect = 0.0
 Identities = 899/1160 (77%), Positives = 1010/1160 (87%), Gaps = 1/1160 (0%)
 Frame = -2

Query: 3772 ELGEDXXXXXXXXXXXXXFEQYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSK 3593
            ELGE              FE+YGLISHQINSYNDFI YG+Q+VFDSVGEI +EPGYDPSK
Sbjct: 60   ELGESFLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSK 119

Query: 3592 RGDGDWKYASIKFGKVNVERPKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVET 3413
            RGDGDWK+AS+KFGKV +ERPKFW+GEKFS +GG+E+L+LLPRHARLQNMTYS R++VET
Sbjct: 120  RGDGDWKHASVKFGKVTLERPKFWAGEKFSVDGGKEYLDLLPRHARLQNMTYSARIMVET 179

Query: 3412 HVQVYTKKLVRSDKFKTGTEQYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDCD 3233
            HVQVYTKKLVRSDKFKTG +++VDKE E EDKRD++IGRIPVMV SELCWM+  +K DC+
Sbjct: 180  HVQVYTKKLVRSDKFKTGVDRFVDKEWEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCE 239

Query: 3232 FDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFEN 3053
            FDHGGYFIVKGAEKTFIAQEQ+CL+RLW+S++PTWM  YRP  KRKRVY+KL +T + E+
Sbjct: 240  FDHGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEH 299

Query: 3052 MGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDADK 2873
            + GGEK LSVY ++ EMP+W+LFFALG SSD+EVVNLID+DI+DT IVN L+ASI++ADK
Sbjct: 300  IKGGEKALSVY-ILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADK 358

Query: 2872 KCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCLL 2693
             C+ FRKGK AL ++++L+KNCKFPP ESVEECI  +LFP+L GFKQKARFLGYMVKCLL
Sbjct: 359  NCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLL 418

Query: 2692 EAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQIE 2513
             ++ GRRK+DNRDDFRNK            L+ H+KHAERRMVKAMQRDLYGDR++Q IE
Sbjct: 419  HSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIE 478

Query: 2512 HYLDASIVTNGLSRAFSTGAWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSYT 2333
            HYLDASI+TNGLSRAFSTG W HPYKRMERVSGVVATLR+TNPLQMTADMRK+RQQV+YT
Sbjct: 479  HYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYT 538

Query: 2332 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLFDCGMNEL 2153
            G+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLAS+GLVST  L+P L+ LF CGM +L
Sbjct: 539  GKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKL 598

Query: 2152 VDDTSSLLLGEHKIFLDGEWVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHREVRI 1973
            VDD S+ L G+ K+ LDGEWVG CEDS  FV +LR  RR NEVPHQVE+K D    EVRI
Sbjct: 599  VDDCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRI 658

Query: 1972 FSDAGRILRPLLVVENLRKIRFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGIGYLF 1793
            FSD GRILRPLLVV NL+KI+ LKGGD  FQ+LLD            EDC TAWG+ Y+ 
Sbjct: 659  FSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYIL 718

Query: 1792 NADKENPQRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPS 1613
             ADKENP  +YTHCELDMSFLLGLSCGIIP+ANHDHARRVLYQSEKHSQQAIGFST NP+
Sbjct: 719  KADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 778

Query: 1612 IRTDTNIHQLYYPQRPLFRTILSECLGKSTYTRH-KGMLPRPEYYNGQCAIVAVNVHLGY 1436
             R DTN HQLYYPQRPLFRT+L++ LGK    ++ KGMLPRPEY+NGQCAIVAVNVHLGY
Sbjct: 779  NRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGY 838

Query: 1435 NQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIGRVDS 1256
            NQEDSLVMNRASLERGMFRSEH+RSYKAEVDNKE   KK K EDS+NFGK QSKIGRVDS
Sbjct: 839  NQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDS 898

Query: 1255 LDDDGFPYIGANLQTGDIVIGKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNFAVVS 1076
            LDDDGFP+IGANLQ+GDI+IGK++ESG D+SVKLKHTERGMVQKV+LSAND+GKNFAVVS
Sbjct: 899  LDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVS 958

Query: 1075 LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPGQLL 896
            LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPSRQTPGQLL
Sbjct: 959  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 1018

Query: 895  EAALGKGIAVGGVLKHATPFSALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRSLVFM 716
            EAALGKGIA+GG  K+ATPFS LSVDAI +QL+  GF+RWG+ERVYNGRTGEM+ SL+FM
Sbjct: 1019 EAALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFM 1078

Query: 715  GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 536
            GPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL
Sbjct: 1079 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1138

Query: 535  HERLFKLSDCSQIHICRKCKNMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASVPYGAK 356
            HERLF LSD SQ+HIC KCKNMANVIQR V GG K+RGPFCR C+S E IVK +VPYGAK
Sbjct: 1139 HERLFTLSDSSQMHICGKCKNMANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGAK 1197

Query: 355  LLAQELFSMNISLKFETEVC 296
            LL QELFSM ISLKF+TE+C
Sbjct: 1198 LLCQELFSMGISLKFDTEIC 1217


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1219

 Score = 1835 bits (4754), Expect = 0.0
 Identities = 891/1145 (77%), Positives = 997/1145 (87%), Gaps = 5/1145 (0%)
 Frame = -2

Query: 3715 EQYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSKRGDGDWKYASIKFGKVNVE 3536
            E+YG+ISHQI+SYNDFI+YG+Q+VFDSVGEI +EPGYDPSK+G+G+WK+AS+KFGKV ++
Sbjct: 77   EKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGYDPSKKGEGEWKHASVKFGKVTLD 136

Query: 3535 RPKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVETHVQVYTKKLVRSDKFKTGT 3356
            RPKFW+GEKFSA  GEE+L+L PRHARLQNMTYS R+IVETHVQV+TKKLVRSDKFKTG 
Sbjct: 137  RPKFWAGEKFSAYNGEEYLDLWPRHARLQNMTYSARIIVETHVQVFTKKLVRSDKFKTGV 196

Query: 3355 EQYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDCDFDHGGYFIVKGAEKTFIAQ 3176
            EQ+VDKE   EDKRD+ IGRIPVMV SELCWMS A++ DCDFDHGGYFIVKGAEK FIAQ
Sbjct: 197  EQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRPDCDFDHGGYFIVKGAEKIFIAQ 256

Query: 3175 EQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFENMGGGEKTLSVYFVVTEMPV 2996
            EQICL+RLW+S+  TWM AYR   KR RVYLKL +T + E++ G  K LSVYF+  EMP+
Sbjct: 257  EQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEHIKGEAKALSVYFLA-EMPI 315

Query: 2995 WILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDADKKCDGFRKGKNALNHIEKLL 2816
            W+LFFALG SSD+E+V+LID+DI+DT I+N L+ASI+DADK C+ FRKGK AL ++++L+
Sbjct: 316  WVLFFALGVSSDREIVDLIDVDIKDTNIINILVASIHDADKNCEDFRKGKKALAYVDRLI 375

Query: 2815 KNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCLLEAYTGRRKMDNRDDFRNKX 2636
            K+CKFPP ESVEECIK +LFP+L G KQKARFLGYMVKCLL +Y GRRK+DNRDDFRNK 
Sbjct: 376  KSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKR 435

Query: 2635 XXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQIEHYLDASIVTNGLSRAFSTG 2456
                       L+ H+KHAERRMVKA+QRDL GDR++Q +EHYLDASI+TNGLSRAFSTG
Sbjct: 436  LDLAGELLERELRAHIKHAERRMVKALQRDLCGDRQVQPLEHYLDASIITNGLSRAFSTG 495

Query: 2455 AWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSYTGRVGDARYPHPSHWGKICF 2276
             W HPYKRMERVSGVVATLR+TNPLQMTAD+RKTRQQV+YTG+VGDARYPHPSHWGK+CF
Sbjct: 496  HWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKVGDARYPHPSHWGKVCF 555

Query: 2275 LSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLFDCGMNELVDDTSSLLLGEHKIFLDGE 2096
            LSTPDGENCGLVKNLAS+GLVSTT L+PLL+ LF CGM +LVDD+++ L G+ K+ LDG+
Sbjct: 556  LSTPDGENCGLVKNLASMGLVSTTVLKPLLETLFRCGMQKLVDDSATSLHGKQKVLLDGD 615

Query: 2095 WVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHREVRIFSDAGRILRPLLVVENLRK 1916
            WVG CEDS  FV +LR  RR NEVPHQVE+K D Q  EVRIFSDAGRI+RPLLVV NL+ 
Sbjct: 616  WVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEVRIFSDAGRIMRPLLVVSNLKN 675

Query: 1915 IRFLK----GGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGIGYLFNADKENPQRRYTHCE 1748
            I+ LK    GGD  FQTLLD+           EDC TAWG+ YL  ADKENP   YTHCE
Sbjct: 676  IKSLKDGMKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLLKADKENPPVNYTHCE 735

Query: 1747 LDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPSIRTDTNIHQLYYPQR 1568
            LDMSFLLGLSCG+IP+ANHDHARRVLYQSEKHSQQAIGFST NP+ R DTN HQLYYPQR
Sbjct: 736  LDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNARVDTNTHQLYYPQR 795

Query: 1567 PLFRTILSECLGKSTYTRH-KGMLPRPEYYNGQCAIVAVNVHLGYNQEDSLVMNRASLER 1391
            PLF T+LS+ LGK    RH KGML RPEYYNGQCAIVAVNVHLGYNQEDS+VMNRASLER
Sbjct: 796  PLFGTMLSDSLGKPKCGRHQKGMLSRPEYYNGQCAIVAVNVHLGYNQEDSVVMNRASLER 855

Query: 1390 GMFRSEHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIGRVDSLDDDGFPYIGANLQT 1211
            GMFRSEH+RSYKAEVDNKE  GKKSK EDS+NFGK QSKIGRVDSLDDDGFP+IGANLQ+
Sbjct: 856  GMFRSEHVRSYKAEVDNKEAMGKKSKVEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQS 915

Query: 1210 GDIVIGKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNFAVVSLRQVRSPCLGDKFSS 1031
            GDI+IGKYAESG D+SVK+KHTERGMVQKV+LSANDDGKNFAVVSLRQVRSPCLGDKFSS
Sbjct: 916  GDIIIGKYAESGADHSVKMKHTERGMVQKVLLSANDDGKNFAVVSLRQVRSPCLGDKFSS 975

Query: 1030 MHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAVGGVLK 851
            MHGQKGVLG+LESQENFPFT +GIVPDIVINPHAFPSRQTPGQLLEAALGKGIA+GG  K
Sbjct: 976  MHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGEK 1035

Query: 850  HATPFSALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRSLVFMGPTFYQRLTHMAEDK 671
            +ATPFSALSVDAI +QL   GFSRWG ERVYNGRTGEM+ SL+FMGPTFYQRL HMAEDK
Sbjct: 1036 YATPFSALSVDAILKQLHGRGFSRWGSERVYNGRTGEMVHSLIFMGPTFYQRLIHMAEDK 1095

Query: 670  VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFKLSDCSQIHI 491
            VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF LSD SQ+HI
Sbjct: 1096 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHI 1155

Query: 490  CRKCKNMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASVPYGAKLLAQELFSMNISLKF 311
            C KCKNMANVIQR   GG KIRGPFCR C+S E IVK  VPYGAKLL QELFSM ISLKF
Sbjct: 1156 CGKCKNMANVIQRSAPGG-KIRGPFCRFCESVEDIVKVDVPYGAKLLCQELFSMGISLKF 1214

Query: 310  ETEVC 296
            +TE+C
Sbjct: 1215 DTEIC 1219


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
            lycopersicum]
          Length = 1219

 Score = 1825 bits (4727), Expect = 0.0
 Identities = 886/1145 (77%), Positives = 996/1145 (86%), Gaps = 5/1145 (0%)
 Frame = -2

Query: 3715 EQYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSKRGDGDWKYASIKFGKVNVE 3536
            E+YGLISHQI+SYNDFI+YG+QKVFDSVGEI +EPGYDPSK+G+G+WK+AS+KFG V ++
Sbjct: 77   EKYGLISHQIDSYNDFIRYGIQKVFDSVGEIHVEPGYDPSKKGEGEWKHASVKFGNVILD 136

Query: 3535 RPKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVETHVQVYTKKLVRSDKFKTGT 3356
            RPKFW+GEK+SA  GEE+LN+ PRHARLQNMTYS R+IVETHVQV+TKKLVRSDKFKTG 
Sbjct: 137  RPKFWAGEKYSAYNGEEYLNMWPRHARLQNMTYSARIIVETHVQVFTKKLVRSDKFKTGV 196

Query: 3355 EQYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDCDFDHGGYFIVKGAEKTFIAQ 3176
            EQ+VDKE   EDKRD+ IGRIPVMV SELCWMS A++ DC+FDHGGYFIVKGAEK FIAQ
Sbjct: 197  EQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRLDCEFDHGGYFIVKGAEKIFIAQ 256

Query: 3175 EQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFENMGGGEKTLSVYFVVTEMPV 2996
            EQ+CL+RLW+S+  TWM AYR   KR RVYLKL +T + E + G  K+LSVYF+  EMP+
Sbjct: 257  EQMCLKRLWVSNHYTWMVAYRSGEKRNRVYLKLTETLKHEQIKGEAKSLSVYFLA-EMPI 315

Query: 2995 WILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDADKKCDGFRKGKNALNHIEKLL 2816
            W+LFFALG SSD+EVV+LID+DI+D KI+N L+ASI+DADK C+ FRKGK AL ++++L+
Sbjct: 316  WVLFFALGVSSDREVVDLIDVDIKDNKIINILVASIHDADKNCEDFRKGKRALAYVDRLI 375

Query: 2815 KNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCLLEAYTGRRKMDNRDDFRNKX 2636
            K+CKFPP ESVEECIK +LFP+L G KQKARFLGYMVKCLL +Y GRRK+DNRDDFRNK 
Sbjct: 376  KSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKR 435

Query: 2635 XXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQIEHYLDASIVTNGLSRAFSTG 2456
                       L+VH+KHAERRMVKA+QRDL GDR++  IEHYLDASI+TNGLSRAFSTG
Sbjct: 436  LDLAGELLERELRVHIKHAERRMVKALQRDLCGDRQVHPIEHYLDASIITNGLSRAFSTG 495

Query: 2455 AWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSYTGRVGDARYPHPSHWGKICF 2276
             W HPYKRMERVSGVVATLR+TNPLQMTAD+RKTRQQV+YTG+VGDARYP+PSHWGK+CF
Sbjct: 496  HWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKVGDARYPNPSHWGKVCF 555

Query: 2275 LSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLFDCGMNELVDDTSSLLLGEHKIFLDGE 2096
            LSTPDGENCGLVKNLAS+GLVSTT L PLL+ LF CGM +LVDD ++ L G+ K+ LDG+
Sbjct: 556  LSTPDGENCGLVKNLASMGLVSTTVLMPLLETLFRCGMQKLVDDCATSLHGKQKVLLDGD 615

Query: 2095 WVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHREVRIFSDAGRILRPLLVVENLRK 1916
            WVG CEDS  FV +LR  RR NEVPHQVE+K D Q  EVRIFSDAGRI+RPLLVV NL+ 
Sbjct: 616  WVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEVRIFSDAGRIMRPLLVVSNLKN 675

Query: 1915 IRFL----KGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGIGYLFNADKENPQRRYTHCE 1748
            I+ L    KGGD  FQTLLD+           EDC TAWG+ YL  ADKENP   YTHCE
Sbjct: 676  IKALNGGVKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLLKADKENPPVNYTHCE 735

Query: 1747 LDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPSIRTDTNIHQLYYPQR 1568
            LDMSFLLGLSCG+IP+ANHDHARRVLYQSEKHSQQAIGFST NP+IR DTN HQLYYPQR
Sbjct: 736  LDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNIRVDTNTHQLYYPQR 795

Query: 1567 PLFRTILSECLGKSTYTRH-KGMLPRPEYYNGQCAIVAVNVHLGYNQEDSLVMNRASLER 1391
            PLF T+LS+ LGK    RH +GML RPEYYNGQCAIVAVNVHLGYNQEDS+VMNRASLER
Sbjct: 796  PLFGTMLSDSLGKPKCARHQRGMLSRPEYYNGQCAIVAVNVHLGYNQEDSVVMNRASLER 855

Query: 1390 GMFRSEHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIGRVDSLDDDGFPYIGANLQT 1211
            GMFRSEH+RSYKAEVDN E +GKKSK EDS+NFGK QSKIGRVD LDDDG PYIGANLQ+
Sbjct: 856  GMFRSEHVRSYKAEVDNMEATGKKSKAEDSVNFGKTQSKIGRVDCLDDDGLPYIGANLQS 915

Query: 1210 GDIVIGKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNFAVVSLRQVRSPCLGDKFSS 1031
            GDI+IGK+AESG D+SVK+KHTE+GMVQKV+LSAND+GKNFAVVSLRQVRSPCLGDKFSS
Sbjct: 916  GDIIIGKFAESGADHSVKMKHTEKGMVQKVLLSANDEGKNFAVVSLRQVRSPCLGDKFSS 975

Query: 1030 MHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAVGGVLK 851
            MHGQKGVLG+LESQENFPFT +GIVPDIVINPHAFPSRQTPGQLLEAALGKGIA+GG  K
Sbjct: 976  MHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGEK 1035

Query: 850  HATPFSALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRSLVFMGPTFYQRLTHMAEDK 671
            +ATPFSALSVDAI +QL   GFSRWG+ERVYNGRTGEM+ SL+FMGPTFYQRL HMAEDK
Sbjct: 1036 YATPFSALSVDAILKQLHGRGFSRWGNERVYNGRTGEMVHSLIFMGPTFYQRLIHMAEDK 1095

Query: 670  VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFKLSDCSQIHI 491
            VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF LSD SQ+HI
Sbjct: 1096 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHI 1155

Query: 490  CRKCKNMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASVPYGAKLLAQELFSMNISLKF 311
            C KCKNMANVIQRPV GG K+RGPFCR C+S E IVK  VPYGAKLL QELFSM ISLKF
Sbjct: 1156 CGKCKNMANVIQRPVPGG-KVRGPFCRFCESVEDIVKVGVPYGAKLLCQELFSMGISLKF 1214

Query: 310  ETEVC 296
            +TE+C
Sbjct: 1215 DTEIC 1219


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1781 bits (4613), Expect = 0.0
 Identities = 864/1145 (75%), Positives = 989/1145 (86%), Gaps = 6/1145 (0%)
 Frame = -2

Query: 3712 QYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSKRGDGDWKYASIKFGKVNVER 3533
            +YGLI HQINS+NDFIK G+Q+VFDS GEI +EPGYDPSKRG+GDW+YAS++FGKV +ER
Sbjct: 60   EYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYASVRFGKVTLER 119

Query: 3532 PKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVETHVQVYTKKLVRSDKFKTGTE 3353
            P+ W+GE      G+E LN LPRHARLQNMTYS RM  + H QVYT+KLVRSDK+KTG +
Sbjct: 120  PRVWAGES----DGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKD 175

Query: 3352 -QYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDCDFDHGGYFIVKGAEKTFIAQ 3176
             +YV+K++  ED RDI+IGRIPVMVKSELCWM+  E+ DC++DHGGYF++KGAEKTFIAQ
Sbjct: 176  NKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQ 235

Query: 3175 EQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFENMGGGEKTLSVYFVVTEMPV 2996
            EQICL+RLW+SS+PTWM AYRP  KRKRVY+KL + P+ EN  GGEK L+VYF  TE+P+
Sbjct: 236  EQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKL-EPPKDENNRGGEKVLTVYFSSTEIPI 294

Query: 2995 WILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDADKKCDG----FRKGKNALNHI 2828
            WILFFALGASSDKEVV+LID +I D  I N L+ASI++AD++ +     FR+  NA++ +
Sbjct: 295  WILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFV 354

Query: 2827 EKLLKNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCLLEAYTGRRKMDNRDDF 2648
            +KL+K+CKFPP ES++ECI  +LFP+  G KQKARFLGYMVKCLL+AYTGRRK DNRDDF
Sbjct: 355  DKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDF 414

Query: 2647 RNKXXXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQIEHYLDASIVTNGLSRA 2468
            RNK            L+VH++HAERRMVKAMQR+LYGDR+L+ IE+YLDASI+TNGLSRA
Sbjct: 415  RNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRA 474

Query: 2467 FSTGAWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSYTGRVGDARYPHPSHWG 2288
            FSTG WSHP+KRMER+SGVVATLR+TNPLQMTADMRKTRQQV YTG+VGDARYPHPSHWG
Sbjct: 475  FSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWG 534

Query: 2287 KICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLFDCGMNELVDDTSSLLLGEHKIF 2108
            K+CFLSTPDGENCGLVKNLA  GLVST  L+PL+DKLFDCGM +LVDDTS+ L G++K+F
Sbjct: 535  KVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVF 594

Query: 2107 LDGEWVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHREVRIFSDAGRILRPLLVVE 1928
            LDG+WVG CED  SFV +LR  RR  E+P QVEIK D Q  EVRIFSDAGRILRPLLVVE
Sbjct: 595  LDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVE 654

Query: 1927 NLRKIRFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGIGYLFNADKENPQRRYTHCE 1748
            NL+K++  KG D +FQ+LLD+           EDC TAWGI YL     ++P  +YTHCE
Sbjct: 655  NLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGH-DDPPVKYTHCE 713

Query: 1747 LDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPSIRTDTNIHQLYYPQR 1568
            LDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNP+IR DT  HQLYYPQR
Sbjct: 714  LDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQR 773

Query: 1567 PLFRTILSECLGKSTYTR-HKGMLPRPEYYNGQCAIVAVNVHLGYNQEDSLVMNRASLER 1391
            PLFRT++S+CLGK  Y+  HKG++PRPEY+NGQ AIVAVNVHLGYNQEDSLVMNRASLER
Sbjct: 774  PLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLER 833

Query: 1390 GMFRSEHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIGRVDSLDDDGFPYIGANLQT 1211
            GMFRSEHIRSYK+EVDN E   KK K EDS++FGKMQSKIGRVDSLDDDGFP+IGANLQ 
Sbjct: 834  GMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQN 893

Query: 1210 GDIVIGKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNFAVVSLRQVRSPCLGDKFSS 1031
            GDIVIG+ AESG D+S+KLKHTERGMVQKV++SANDDGKNFAVVSLRQVR+PCLGDKFSS
Sbjct: 894  GDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSS 953

Query: 1030 MHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAVGGVLK 851
            MHGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPSRQTPGQLLEAALGKGIA GG+L+
Sbjct: 954  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLR 1013

Query: 850  HATPFSALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRSLVFMGPTFYQRLTHMAEDK 671
            HATPFS LSVDAI  QL   GFSRWG ERVYNGRTGEM+RSL+FMGPTFYQRL HMAEDK
Sbjct: 1014 HATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDK 1073

Query: 670  VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFKLSDCSQIHI 491
            VKFRNTGPVHPLTRQPV+DRKRFGGIKFGEMERDCLIAHGAAANLHERLF LSD + +HI
Sbjct: 1074 VKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHI 1133

Query: 490  CRKCKNMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASVPYGAKLLAQELFSMNISLKF 311
            CR+CKN++NVIQR V GGRK+RGP+CR C+S+E IVK +VPYGAKLL QELFSM ISLKF
Sbjct: 1134 CRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKF 1193

Query: 310  ETEVC 296
            ET++C
Sbjct: 1194 ETQLC 1198


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1759 bits (4555), Expect = 0.0
 Identities = 857/1144 (74%), Positives = 979/1144 (85%), Gaps = 5/1144 (0%)
 Frame = -2

Query: 3712 QYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSKRGDGDWKYASIKFGKVNVER 3533
            +YGLI HQINS+NDFIK G+Q+VFDS GEI +EPGYDPSKRG+GDW+YAS++FGKV +ER
Sbjct: 96   EYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYASVRFGKVTLER 155

Query: 3532 PKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVETHVQVYTKKLVRSDKFKTGTE 3353
            P+ W+GE      G+E LN LPRHARLQNMTYS RM  + H QVYT+KLVRSDK+KTG +
Sbjct: 156  PRVWAGES----DGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKD 211

Query: 3352 -QYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDCDFDHGGYFIVKGAEKTFIAQ 3176
             +YV+K++  ED RDI+IGRIPVMVKSELCWM+  E+ DC++DHGGYF++KGAEKTFIAQ
Sbjct: 212  NKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQ 271

Query: 3175 EQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFENMGGGEKTLSVYFVVTEMPV 2996
            EQICL+RLW+SS+PTWM AYRP  KRKRVY+KL + P+ EN  GGEK L+VYF  TE+P+
Sbjct: 272  EQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKL-EPPKDENNRGGEKVLTVYFSSTEIPI 330

Query: 2995 WILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDADKKCDG----FRKGKNALNHI 2828
            WILFFALGASSDKEVV+LID +I D  I N L+ASI++AD++ +     FR+  NA++ +
Sbjct: 331  WILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFV 390

Query: 2827 EKLLKNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCLLEAYTGRRKMDNRDDF 2648
            +KL+K+CKFPP ES++ECI  +LFP+  G KQKARFLGYMVKCLL+AYTGRRK DNRDDF
Sbjct: 391  DKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDF 450

Query: 2647 RNKXXXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQIEHYLDASIVTNGLSRA 2468
            RNK            L+VH++HAERRMVKAMQR+LYGDR+L+ IE+YLDASI+TNGLSRA
Sbjct: 451  RNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRA 510

Query: 2467 FSTGAWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSYTGRVGDARYPHPSHWG 2288
            FSTG WSHP+KRMER+SGVVATLR+TNPLQMTADMRKTRQQV YTG+VGDARYPHPSHWG
Sbjct: 511  FSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWG 570

Query: 2287 KICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLFDCGMNELVDDTSSLLLGEHKIF 2108
            K+CFLSTPDGENCGLVKNLA  GLVST  L+PL+DKLFDCGM +LVDDTS+ L G++K+F
Sbjct: 571  KVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVF 630

Query: 2107 LDGEWVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHREVRIFSDAGRILRPLLVVE 1928
            LDG+WVG CED  SFV +LR  RR  E+P QVEIK D Q  EVRIFSDAGRILRPLLVVE
Sbjct: 631  LDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVE 690

Query: 1927 NLRKIRFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGIGYLFNADKENPQRRYTHCE 1748
            NL+K++  KG D +FQ+LLD+           EDC TAWGI YL     ++P  +YTHCE
Sbjct: 691  NLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGH-DDPPVKYTHCE 749

Query: 1747 LDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPSIRTDTNIHQLYYPQR 1568
            LDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNP+IR DT  HQLYYPQR
Sbjct: 750  LDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQR 809

Query: 1567 PLFRTILSECLGKSTYTRHKGMLPRPEYYNGQCAIVAVNVHLGYNQEDSLVMNRASLERG 1388
            PLFRT++S+             LPRPEY+NGQ AIVAVNVHLGYNQEDSLVMNRASLERG
Sbjct: 810  PLFRTMISD-------------LPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERG 856

Query: 1387 MFRSEHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIGRVDSLDDDGFPYIGANLQTG 1208
            MFRSEHIRSYK+EVDN E   KK K EDS++FGKMQSKIGRVDSLDDDGFP+IGANLQ G
Sbjct: 857  MFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNG 916

Query: 1207 DIVIGKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNFAVVSLRQVRSPCLGDKFSSM 1028
            DIVIG+ AESG D+S+KLKHTERGMVQKV++SANDDGKNFAVVSLRQVR+PCLGDKFSSM
Sbjct: 917  DIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSM 976

Query: 1027 HGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAVGGVLKH 848
            HGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPSRQTPGQLLEAALGKGIA GG+L+H
Sbjct: 977  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRH 1036

Query: 847  ATPFSALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRSLVFMGPTFYQRLTHMAEDKV 668
            ATPFS LSVDAI  QL   GFSRWG ERVYNGRTGEM+RSL+FMGPTFYQRL HMAEDKV
Sbjct: 1037 ATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKV 1096

Query: 667  KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFKLSDCSQIHIC 488
            KFRNTGPVHPLTRQPV+DRKRFGGIKFGEMERDCLIAHGAAANLHERLF LSD + +HIC
Sbjct: 1097 KFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHIC 1156

Query: 487  RKCKNMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASVPYGAKLLAQELFSMNISLKFE 308
            R+CKN++NVIQR V GGRK+RGP+CR C+S+E IVK +VPYGAKLL QELFSM ISLKFE
Sbjct: 1157 RRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKFE 1216

Query: 307  TEVC 296
            T++C
Sbjct: 1217 TQLC 1220


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 1710 bits (4429), Expect = 0.0
 Identities = 825/1071 (77%), Positives = 929/1071 (86%), Gaps = 1/1071 (0%)
 Frame = -2

Query: 3772 ELGEDXXXXXXXXXXXXXFEQYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSK 3593
            ELGE              FE+YG ISHQINSYNDFI YG+Q+VFDSVGEI +EPGYDPSK
Sbjct: 54   ELGESFLKNFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSK 113

Query: 3592 RGDGDWKYASIKFGKVNVERPKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVET 3413
            RGDGDWK+AS+KFGKV +ERPKFW+GEKFS  GG+E+L+LLPRHARLQNMTYS R++VET
Sbjct: 114  RGDGDWKHASVKFGKVTLERPKFWAGEKFSVGGGKEYLDLLPRHARLQNMTYSARIMVET 173

Query: 3412 HVQVYTKKLVRSDKFKTGTEQYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDCD 3233
            HVQVYTKKLVRSDKFKTG +++VDKE E E KRD++IGRIPVMV SELCWM+  +K DC+
Sbjct: 174  HVQVYTKKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCE 233

Query: 3232 FDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFEN 3053
            FDHGGYFI KGAEKTFIAQEQ+CL+RLW+S++PTWM  YRP  KRKRVY+KL +T + E+
Sbjct: 234  FDHGGYFIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEH 293

Query: 3052 MGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDADK 2873
            + GGEK LSVY ++ EMP+W+LFFALG SSD+EVVNLID+DI+DT IVN L+ASI++ADK
Sbjct: 294  IKGGEKALSVY-ILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADK 352

Query: 2872 KCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCLL 2693
             C+ FRKGK AL ++++L+KNCKFPP ESVEECI  +LFP+L GFKQKARFLGYMVKCLL
Sbjct: 353  NCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLL 412

Query: 2692 EAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQIE 2513
             ++ GRRK+DNRDDFRNK            L+ H+KHAERRMVKAMQRDLYGDR++Q IE
Sbjct: 413  HSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIE 472

Query: 2512 HYLDASIVTNGLSRAFSTGAWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSYT 2333
            HYLDASI+TNGLSRAFSTG W HPYKRMERVSGVVATLR+TNPLQMTADMRK+RQQV+YT
Sbjct: 473  HYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYT 532

Query: 2332 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLFDCGMNEL 2153
            G+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLAS+GLVST  L+P L+ LF CGM +L
Sbjct: 533  GKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKL 592

Query: 2152 VDDTSSLLLGEHKIFLDGEWVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHREVRI 1973
            VDD S+ L G+ K+ LDGEWVG CEDS  FV +LR  RR NEVPHQVE+K D    EVRI
Sbjct: 593  VDDCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRI 652

Query: 1972 FSDAGRILRPLLVVENLRKIRFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGIGYLF 1793
            FSD GRILRPLLVV NL+KI+ LKGGD  FQ+LLD            EDC TAWG+ Y+ 
Sbjct: 653  FSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYIL 712

Query: 1792 NADKENPQRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPS 1613
             ADKENP  +YTHCELDMSFLLGLSCGIIP+ANHDHARRVLYQSEKHSQQAIGFST NP+
Sbjct: 713  KADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 772

Query: 1612 IRTDTNIHQLYYPQRPLFRTILSECLGKSTYTRH-KGMLPRPEYYNGQCAIVAVNVHLGY 1436
             R DTN HQLYYPQRPLFRT+L++ LGK    ++ KGMLPRPEY+NGQCAIVAVNVHLGY
Sbjct: 773  NRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGY 832

Query: 1435 NQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIGRVDS 1256
            NQEDSLVMNRASLERGMFRSEH+RSYKAEVDNKE   KK K EDS+NFGK QSKIGRVDS
Sbjct: 833  NQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDS 892

Query: 1255 LDDDGFPYIGANLQTGDIVIGKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNFAVVS 1076
            LDDDGFP+IGANLQ+GDI+IGK++ESG D+SVKLKHTERGMVQKV+LSAND+GKNFAVVS
Sbjct: 893  LDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVS 952

Query: 1075 LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPGQLL 896
            LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPSRQTPGQLL
Sbjct: 953  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 1012

Query: 895  EAALGKGIAVGGVLKHATPFSALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRSLVFM 716
            EAALGKGIA+GG  K+ATPFS LSVDAI +QL+  GF+RWG+ERVYNGRTGEM+ SL+FM
Sbjct: 1013 EAALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFM 1072

Query: 715  GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 563
            GPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL
Sbjct: 1073 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1123


>gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1184

 Score = 1689 bits (4373), Expect = 0.0
 Identities = 822/1160 (70%), Positives = 951/1160 (81%), Gaps = 1/1160 (0%)
 Frame = -2

Query: 3772 ELGEDXXXXXXXXXXXXXFEQYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSK 3593
            +LGE+             F++YGLISHQ+NSYN FIKYGLQ  FDS GE  I  GYDPSK
Sbjct: 31   QLGEEFLRGFCKQAAVSFFKEYGLISHQLNSYNAFIKYGLQNTFDSFGEFLIHSGYDPSK 90

Query: 3592 RGDGDWKYASIKFGKVNVERPKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVET 3413
            +G+GDW++A ++FGKV VERP FW+       GG E LN+LPRHARLQNMTYS RM V  
Sbjct: 91   KGEGDWRHARVRFGKVTVERPTFWA-----VSGGNE-LNMLPRHARLQNMTYSSRMKVNV 144

Query: 3412 HVQVYTKKLVRSDKFKTGTEQYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDCD 3233
             +QVYT K V+SDKFKTG E++V++E+  +D RDI+IGRIPVMV+S+LCWM++ EK DCD
Sbjct: 145  DLQVYTAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGRIPVMVRSDLCWMNEVEKADCD 204

Query: 3232 FDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFEN 3053
            FDHGGYF++KG EK FIAQEQI ++RLW+S+S  W  AYR   KR R+ ++LV+  + E 
Sbjct: 205  FDHGGYFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAYRSEVKRNRLIIRLVENSKVEY 264

Query: 3052 MGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDADK 2873
            + GGEK L+VYF+ TE+PVW+LFFALG SSDKEVVNLID +  D+ I N L ASI +AD 
Sbjct: 265  IKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLIDYESNDSSITNILFASIRNADG 324

Query: 2872 KCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCLL 2693
            KC  F +G+NA++++ KL+K+ +FPP E +EEC+  +LFP+L+ FKQKARFLGYMVKCLL
Sbjct: 325  KCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLFPTLRSFKQKARFLGYMVKCLL 384

Query: 2692 EAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQIE 2513
            +AYTGR K DNRDDFRNK            LKVH+ HA RRM K +QRDLY DR ++ IE
Sbjct: 385  QAYTGRLKCDNRDDFRNKRLELAGELLERELKVHIAHARRRMAKTLQRDLYADRTVRPIE 444

Query: 2512 HYLDASIVTNGLSRAFSTGAWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSYT 2333
            HYLDASIVTNGLSRAFSTGAWSHPYKRMER+SGVVA L + NPLQ   D+RKTRQQV YT
Sbjct: 445  HYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRQQVQYT 504

Query: 2332 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLFDCGMNEL 2153
            G+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA+ GLVST  +E ++DKLFD GM EL
Sbjct: 505  GKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIMESIVDKLFDSGMEEL 564

Query: 2152 VDDTSSLLLGEHKIFLDGEWVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHREVRI 1973
            V+DT S L G+ K+FL+GEWVG CEDS SF  ++R  RRS E PHQVEIK D    EVRI
Sbjct: 565  VNDTCSSLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEHKGEVRI 624

Query: 1972 FSDAGRILRPLLVVENLRKIRFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGIGYLF 1793
            FSD GRILRPLLVV+NL +I+  KG + +FQ LL+            EDC TAW I YL 
Sbjct: 625  FSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEEEEDCRTAWSIKYLL 684

Query: 1792 NADKENPQRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPS 1613
               +     +YTHCELDMSFLLGLSCGIIP+ANHDHARRVLYQ++KHSQQAIGFSTTNP+
Sbjct: 685  TDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPN 744

Query: 1612 IRTDTNIHQLYYPQRPLFRTILSECLGKSTY-TRHKGMLPRPEYYNGQCAIVAVNVHLGY 1436
            IR DT  HQLYYPQRPLFRT+ S+CLGK  +    KG+LP+PE YNGQ AIVAVNVHLGY
Sbjct: 745  IRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHPLGQKGVLPKPELYNGQNAIVAVNVHLGY 804

Query: 1435 NQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIGRVDS 1256
            NQEDSLVMNR+SLERGMFRSEH+RSYKAEVDNKE   K+ K ED +NFGK+QSKIGRVDS
Sbjct: 805  NQEDSLVMNRSSLERGMFRSEHVRSYKAEVDNKEIQDKRRKSEDIVNFGKIQSKIGRVDS 864

Query: 1255 LDDDGFPYIGANLQTGDIVIGKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNFAVVS 1076
            LDDDGFPY+GANLQ GDIVIG+ AESG D+S+KLKHTERGMVQKV+LS+NDDGKN+AVVS
Sbjct: 865  LDDDGFPYVGANLQCGDIVIGRCAESGADHSIKLKHTERGMVQKVVLSSNDDGKNYAVVS 924

Query: 1075 LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPGQLL 896
            LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPSRQTPGQLL
Sbjct: 925  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTTQGIVPDIVINPHAFPSRQTPGQLL 984

Query: 895  EAALGKGIAVGGVLKHATPFSALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRSLVFM 716
            EAALGKGIA GG +K+ATPFS +SVDAIT+QL   GFSRWG+ERVYNGRTGEM+RSL+FM
Sbjct: 985  EAALGKGIACGGSMKYATPFSTISVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFM 1044

Query: 715  GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 536
            GPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKR+GGIKFGEMERDCLIAHGA+ANL
Sbjct: 1045 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRYGGIKFGEMERDCLIAHGASANL 1104

Query: 535  HERLFKLSDCSQIHICRKCKNMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASVPYGAK 356
            HERL  LSD SQ+H+CR CKN+ANVI+R V GGRKIRGP+CR C S + IV+ +VPYGAK
Sbjct: 1105 HERLVTLSDSSQMHVCRNCKNVANVIERAVPGGRKIRGPYCRGCQSVDDIVRVNVPYGAK 1164

Query: 355  LLAQELFSMNISLKFETEVC 296
            LL QELFSM I+LKFET++C
Sbjct: 1165 LLCQELFSMGINLKFETQLC 1184


>gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlisea aurea]
          Length = 1205

 Score = 1687 bits (4369), Expect = 0.0
 Identities = 832/1147 (72%), Positives = 963/1147 (83%), Gaps = 7/1147 (0%)
 Frame = -2

Query: 3715 EQYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSKRGD-GDWKYASIKFGKVNV 3539
            EQ+GLISHQ+NSYN+FI +G+ ++F S+GEI +EPGYDPSKRGD G+W+ AS+KFGKVN+
Sbjct: 62   EQHGLISHQLNSYNNFINHGIHQLFASIGEIIVEPGYDPSKRGDDGEWQKASLKFGKVNL 121

Query: 3538 ERPKFWSGEKFS-AEGGEEFLNLLPRHARLQNMTYSGRMIVETHVQV-YTKKLVRSDKFK 3365
            ERP FW+GEKFS AEG ++ L L P+HARLQNMTY+ R+ VETH++V YT+ LVRS+KF 
Sbjct: 122  ERPSFWTGEKFSSAEGAKDNLELHPKHARLQNMTYAARIKVETHLEVVYTEGLVRSEKFT 181

Query: 3364 TGTEQYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDCDFDHGGYFIVKGAEKTF 3185
            TG   +V +   K    +I  G++PVMV S+LCW+    K DC+FD GGYFI+KGAEKTF
Sbjct: 182  TGVSTHVQRTTLKSLSLEINFGKLPVMVNSDLCWLKSTGKKDCEFDQGGYFIIKGAEKTF 241

Query: 3184 IAQEQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFENMGGGEKTLSVYFVVTE 3005
            IAQEQICL+RLW+S  PTW  +YRP  KR+R+YLKLV  P+ E+   GEK L+VYF   E
Sbjct: 242  IAQEQICLKRLWVSKDPTWTISYRPITKRRRIYLKLV--PKVESAPVGEKILTVYFSFVE 299

Query: 3004 MPVWILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDADKKCDGFRKGKNALNHIE 2825
            MP+WILFFALGA +DKEVV +ID+DI+D+ I N L+ASI+DAD K +GFRK  +A+ H++
Sbjct: 300  MPIWILFFALGARNDKEVVKMIDMDIEDSAIANILLASIHDADSKYEGFRKNGSAIKHLK 359

Query: 2824 KLLKNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCLLEAYTGRRKMDNRDDFR 2645
             L++  K+PPTESVEE  +  LFP L+   QKA FL YMVKCLLE Y GRRK+DNRDD R
Sbjct: 360  DLMQEGKYPPTESVEEYFQIHLFPHLKSSVQKACFLAYMVKCLLECYKGRRKVDNRDDLR 419

Query: 2644 NKXXXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQIEHYLDASIVTNGLSRAF 2465
            NK            L++ +KHAERRM+++MQRDL   R+LQ I+HYLDASI+TNGLSRAF
Sbjct: 420  NKRLELAGELLERELRIQIKHAERRMMRSMQRDLDKGRDLQTIDHYLDASIITNGLSRAF 479

Query: 2464 STGAWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSYTGRVGDARYPHPSHWGK 2285
            STGAWSHPYKRMER+SG+VATLR+TNPLQ  ADMRKTRQQVSYTGRVGDARYPHPSHWGK
Sbjct: 480  STGAWSHPYKRMERISGIVATLRRTNPLQAIADMRKTRQQVSYTGRVGDARYPHPSHWGK 539

Query: 2284 ICFLSTPDGENCGLVKNLASLGLVSTTNL--EPLLDKLFDCGMNELVDDTSSLLLGEHKI 2111
            ICFLSTPDGENCGLVKNLASLGLVST  L  E LL K  +CGM +L DDTSSLL G+HKI
Sbjct: 540  ICFLSTPDGENCGLVKNLASLGLVSTEVLDQEGLLKKFRECGMEQLADDTSSLLDGKHKI 599

Query: 2110 FLDGEWVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHREVRIFSDAGRILRPLLVV 1931
            FLDG+ VG C DS SFV  LR  R+ NEVPHQVEIKMD+ + EVR+F+DAGRILRPLLVV
Sbjct: 600  FLDGDLVGVCRDSSSFVSMLRRRRQKNEVPHQVEIKMDQSNGEVRVFADAGRILRPLLVV 659

Query: 1930 ENLRKIRFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGIGYLFNADKENPQRRYTHC 1751
             NLRKI  LK   + FQ+LLD            EDC TAWG  YLF A+ ENP  +Y+HC
Sbjct: 660  RNLRKINDLKS-HVFFQSLLDVGIVELIGPEEEEDCQTAWGTKYLFMAELENPPVKYSHC 718

Query: 1750 ELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPSIRTDTNIHQLYYPQ 1571
            ELD SFLLGLSCGIIP+ANHDHARRVLYQSEKHSQQAIGFSTT+P+IR DTN HQLYYPQ
Sbjct: 719  ELDSSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTSPNIRVDTNSHQLYYPQ 778

Query: 1570 RPLFRTILSECLGKSTYT-RHKGMLPRPEYYNGQCAIVAVNVHLGYNQEDSLVMNRASLE 1394
            +PLFRT+LS+CLGK T + R KG++P P ++NGQCAIVAVNVHLGYNQEDSLVMNRASLE
Sbjct: 779  KPLFRTVLSDCLGKLTDSCRRKGIIPLPPFFNGQCAIVAVNVHLGYNQEDSLVMNRASLE 838

Query: 1393 RGMFRSEHIRSYKAEVDNKEGSG-KKSKPEDSINFGKMQSKIGRVDSLDDDGFPYIGANL 1217
            RGMFRSEH+RSYK++VDN E +  KK K +D I+FGK+QSKIGRVDSLD+DGFPY+GANL
Sbjct: 839  RGMFRSEHVRSYKSDVDNSEAAPVKKFKADDLISFGKVQSKIGRVDSLDEDGFPYVGANL 898

Query: 1216 QTGDIVIGKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNFAVVSLRQVRSPCLGDKF 1037
            QTGDIVIGK   +G D+S+KLKHTERGMVQKVILSA+D+G+N+AVVSLRQVRSPCLGDKF
Sbjct: 899  QTGDIVIGKCTATGVDHSIKLKHTERGMVQKVILSADDEGRNYAVVSLRQVRSPCLGDKF 958

Query: 1036 SSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAVGGV 857
            SSMHGQKGVLGFLESQENFPFTR+GIVPDIVINPHAFPSRQTPGQLLEAALGKGIA+GG 
Sbjct: 959  SSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGG 1018

Query: 856  LKHATPFSALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRSLVFMGPTFYQRLTHMAE 677
            LK+ATPFS+ SV+ IT QL   GFSRWG E+VY+GRTGE ++SL+FMGPTFYQRLTHMAE
Sbjct: 1019 LKYATPFSSPSVEDITAQLHRLGFSRWGAEKVYDGRTGEALKSLIFMGPTFYQRLTHMAE 1078

Query: 676  DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFKLSDCSQI 497
            DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF LSD SQ+
Sbjct: 1079 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQM 1138

Query: 496  HICRKCKNMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASVPYGAKLLAQELFSMNISL 317
            HICRKCKNMANVIQRPV GGRK+RGP+CR C+S E +V+ +VPYGAKLL QELFSM ISL
Sbjct: 1139 HICRKCKNMANVIQRPVFGGRKVRGPYCRFCESVEDVVRVNVPYGAKLLCQELFSMGISL 1198

Query: 316  KFETEVC 296
            KF+TE+C
Sbjct: 1199 KFDTEIC 1205


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score = 1686 bits (4365), Expect = 0.0
 Identities = 821/1165 (70%), Positives = 954/1165 (81%), Gaps = 6/1165 (0%)
 Frame = -2

Query: 3772 ELGEDXXXXXXXXXXXXXFEQYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSK 3593
            +LGE+             F +YGL+SHQINSYN+FIK GLQK FDS GE  +EPGYDPSK
Sbjct: 41   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 100

Query: 3592 RGDGDWKYASIKFGKVNVERPKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVET 3413
            +G+G+W+YAS++FG+V +++P F++G      GG+E  ++ PRHARLQNMTYS RM V+ 
Sbjct: 101  KGEGEWRYASMRFGQVTLDKPSFFAGN-----GGDEH-DMFPRHARLQNMTYSSRMKVKV 154

Query: 3412 HVQVYTKKLVRSDKFKTGTEQYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDCD 3233
              QVYT+K V SDKFKTG EQY+ KE+  ++  DI+IGRIPVMVKS+LCWM   EK DCD
Sbjct: 155  QFQVYTQKRVTSDKFKTGREQYIQKEVLSDEATDIIIGRIPVMVKSDLCWMKGVEKGDCD 214

Query: 3232 FDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFEN 3053
            FDHGGYFI+KGAEK F+AQEQICL+RLW+S+S  W  AY+   KR R+ ++LVD  +FE+
Sbjct: 215  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFED 274

Query: 3052 MGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDADK 2873
            + GGEK LSVYF+ TE+P+WILFFALG SSDKE+VNLID   +D  I+N L ASI+DAD 
Sbjct: 275  IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 334

Query: 2872 KCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCLL 2693
            KCD FRKG+NAL +++KL+K   FPP ES EEC+  +LFPSL G KQKARFLGYMVKCLL
Sbjct: 335  KCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLL 394

Query: 2692 EAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQIE 2513
            +AY+GRRK DNRDDFRNK            LKVH+ HA +RM KA+QRDLYGDR ++ IE
Sbjct: 395  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 454

Query: 2512 HYLDASIVTNGLSRAFSTGAWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSYT 2333
            +YLDASI+TNGLSRAFSTGAWSHP+KR ER+SG+VA L + NPLQ   D+R+TRQQV YT
Sbjct: 455  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 514

Query: 2332 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLFDCGMNEL 2153
            G+VGDARYPHPSHWGKICFLSTPDGENCGLVKNL   GLVST+ LEP+ ++LF+ GM +L
Sbjct: 515  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKL 574

Query: 2152 VDDTSSLLLGEHKIFLDGEWVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHREVRI 1973
             DD S  L G+ K+F+DG+W+G C+DS SFV +LR  RR  E+P QVEIK D    EVRI
Sbjct: 575  ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRI 634

Query: 1972 FSDAGRILRPLLVVENLRKIRFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGIGYLF 1793
            F DAGRILRPLLVVEN+ KI+ L+G + +FQ LLD            EDC TAWGI YL 
Sbjct: 635  FMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 694

Query: 1792 NADKENPQRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPS 1613
               ++    ++THCELDMSFLLGLSCGIIP+ANHDHARRVLYQS+KHS QAIGF TTNPS
Sbjct: 695  KDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPS 754

Query: 1612 IRTDTNIHQLYYPQRPLFRTILSECLGKSTYTRHKGMLPRPEYYNGQCAIVAVNVHLGYN 1433
            IR DT  HQL+YPQRPLFRT++S+CLGK  Y  H  +LPRPE YNGQ AIVAVNVHLGYN
Sbjct: 755  IRVDTLSHQLFYPQRPLFRTMISDCLGKPGY-GHNHILPRPELYNGQNAIVAVNVHLGYN 813

Query: 1432 QEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIGRVDSL 1253
            QEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE   K+   +D +NFGK+QSKIGRVDSL
Sbjct: 814  QEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSL 873

Query: 1252 DDDGFPYIGANLQTGDIVIGKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNFAVVSL 1073
            DDDGFP+IGANLQ GDIVIGKYA+SG D+S+KLKHTERGMVQKV+LS+NDDGKNF+VVSL
Sbjct: 874  DDDGFPFIGANLQCGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSL 933

Query: 1072 RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPGQLLE 893
            RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPSRQTPGQLLE
Sbjct: 934  RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 993

Query: 892  AALGKGIAV------GGVLKHATPFSALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIR 731
            AALGKGIA        G+ ++ATPF+  SVDAIT+QL   GFS+WG ER+Y+GRTGEM+R
Sbjct: 994  AALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1053

Query: 730  SLVFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 551
            SL+F+GPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG
Sbjct: 1054 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1113

Query: 550  AAANLHERLFKLSDCSQIHICRKCKNMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASV 371
            AAANLHERLF LSD  Q+HICRKCKN+ANVIQR V GGRK+RGP+CRICDS + IVKA+V
Sbjct: 1114 AAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANV 1173

Query: 370  PYGAKLLAQELFSMNISLKFETEVC 296
            PYGAKLL QELFSM I+LKF+TE C
Sbjct: 1174 PYGAKLLCQELFSMGITLKFDTEFC 1198


>gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score = 1674 bits (4334), Expect = 0.0
 Identities = 821/1163 (70%), Positives = 944/1163 (81%), Gaps = 4/1163 (0%)
 Frame = -2

Query: 3772 ELGEDXXXXXXXXXXXXXFEQYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSK 3593
            +LGE              F +YGLISHQINSYNDFIK G+Q+VFDS GEI +EPGYDPSK
Sbjct: 45   DLGEGFLKFFCKEAAIAFFNEYGLISHQINSYNDFIKNGIQRVFDSFGEIIVEPGYDPSK 104

Query: 3592 RGDGDWKYASIKFGKVNVERPKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVET 3413
            +G+ +W+YAS+KFGKV +  P FW G        E+   +LPRHARLQNM+Y+ +M V  
Sbjct: 105  KGESEWRYASVKFGKVTLGMPSFWGGSD-----DEKEYKMLPRHARLQNMSYASKMKVNI 159

Query: 3412 HVQVYTKKLVRSDKFKTGTEQYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDCD 3233
             V+VYT+KLV SDKFKTG  QY+DK++   D RDI+IG +PVMVKS+LCWM   EK DCD
Sbjct: 160  TVEVYTQKLVSSDKFKTGKSQYLDKQILSTDTRDIIIGSVPVMVKSDLCWMKDFEKGDCD 219

Query: 3232 FDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFEN 3053
            FDHGGYFI+KGAEKTFIAQEQ CL+RL ++++     AYR   KR R+ ++LV   + EN
Sbjct: 220  FDHGGYFIIKGAEKTFIAQEQSCLKRLLITNNQGLTVAYRSEVKRHRLIIRLVGISKLEN 279

Query: 3052 MGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDADK 2873
            + G EK L+VYF+ TE+PVWI FFALG SSD+EV+NLID D +D  I N L ASI DADK
Sbjct: 280  IEGVEKVLTVYFMSTEIPVWIWFFALGVSSDREVMNLIDYDSEDASISNILFASIRDADK 339

Query: 2872 KCD----GFRKGKNALNHIEKLLKNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMV 2705
              D    GFR+GKNAL +++++++   FPP ES+EECI  +LFP+L+G KQKARFLGYMV
Sbjct: 340  LNDKVDGGFRRGKNALKYVDEVIRKTAFPPGESMEECISLYLFPNLKGLKQKARFLGYMV 399

Query: 2704 KCLLEAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDREL 2525
            K LL+AY GRRK DNRDDFRNK            LK H+ HA RRM KA+QRDLYGDR +
Sbjct: 400  KSLLQAYAGRRKCDNRDDFRNKRLDLAGELLERELKAHIGHARRRMAKALQRDLYGDRAV 459

Query: 2524 QQIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQ 2345
            + IEHYLDASIVTNG+SRAFSTGAW HP+KRMER+SGVVAT+ + NPLQ   DMRKTRQQ
Sbjct: 460  RPIEHYLDASIVTNGISRAFSTGAWCHPFKRMERMSGVVATVGRANPLQTMVDMRKTRQQ 519

Query: 2344 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLFDCG 2165
            V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA+ GLVST  LE L+ +L  CG
Sbjct: 520  VQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNVLESLIPQLLTCG 579

Query: 2164 MNELVDDTSSLLLGEHKIFLDGEWVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHR 1985
            M +LVDDT + L G+ K+FL+G+WVG CEDS SFV +LR MRR  ++PHQVEIK D    
Sbjct: 580  MEKLVDDTFTSLRGKDKVFLNGDWVGVCEDSLSFVLELRRMRRRKKLPHQVEIKRDVHQG 639

Query: 1984 EVRIFSDAGRILRPLLVVENLRKIRFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGI 1805
            EVRIFSDAGRILRPLLVVENL K++  KGG  SFQ  LD            EDC TAWGI
Sbjct: 640  EVRIFSDAGRILRPLLVVENLNKVKASKGGKSSFQYFLDNGIIELIGAEEEEDCSTAWGI 699

Query: 1804 GYLFNADKENPQRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFST 1625
             YLF  DK     ++THCELDMSFLLGLSCGIIPYANHDHARRVLYQ++KHSQQAIGFST
Sbjct: 700  KYLFMEDKGKSATKFTHCELDMSFLLGLSCGIIPYANHDHARRVLYQAQKHSQQAIGFST 759

Query: 1624 TNPSIRTDTNIHQLYYPQRPLFRTILSECLGKSTYTRHKGMLPRPEYYNGQCAIVAVNVH 1445
            TNP++R DT  HQL+YPQRPLF+T+ S+CLGK    RH  ++P+PEYYNGQ AIVAVNVH
Sbjct: 760  TNPNLRVDTLSHQLHYPQRPLFQTMTSDCLGKPG--RHNRIVPKPEYYNGQNAIVAVNVH 817

Query: 1444 LGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIGR 1265
            LG+NQEDS+VMNRASLERGMFRSEHIRSYKAEVDNKE   K+ KP+D +NFGKMQSK GR
Sbjct: 818  LGFNQEDSIVMNRASLERGMFRSEHIRSYKAEVDNKESLDKRRKPDDCVNFGKMQSKFGR 877

Query: 1264 VDSLDDDGFPYIGANLQTGDIVIGKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNFA 1085
            VDSLDDDGFPY+GANLQ+GDI+IG+ +ESG D+S+KLKHTERGMVQKV+LS+NDDGKNFA
Sbjct: 878  VDSLDDDGFPYVGANLQSGDIIIGRCSESGADHSIKLKHTERGMVQKVLLSSNDDGKNFA 937

Query: 1084 VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPG 905
            VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT +G+VPDIVINPHAFPSRQTPG
Sbjct: 938  VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPG 997

Query: 904  QLLEAALGKGIAVGGVLKHATPFSALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRSL 725
            QLLEAALGKGIA GG  ++ATPFS LSVD IT QL S GFSRWG+ERVYNG TG M+RSL
Sbjct: 998  QLLEAALGKGIACGGSKRYATPFSTLSVDDITDQLHSAGFSRWGNERVYNGATGAMVRSL 1057

Query: 724  VFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAA 545
            +FMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+
Sbjct: 1058 IFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAS 1117

Query: 544  ANLHERLFKLSDCSQIHICRKCKNMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASVPY 365
            ANLHERLF LSD SQ+H+C+KCKN+A VI R V GGRKIRGP CRICDSA+ +V+ +VPY
Sbjct: 1118 ANLHERLFTLSDSSQMHVCQKCKNVAYVILRTVAGGRKIRGPHCRICDSADDLVRVNVPY 1177

Query: 364  GAKLLAQELFSMNISLKFETEVC 296
            GAKLL QELFSM ISLKFET  C
Sbjct: 1178 GAKLLCQELFSMGISLKFETRFC 1200


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1652 bits (4278), Expect = 0.0
 Identities = 802/1140 (70%), Positives = 940/1140 (82%), Gaps = 1/1140 (0%)
 Frame = -2

Query: 3712 QYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSKRGDGDWKYASIKFGKVNVER 3533
            +YGLISHQINSYNDFI  G+QK FDS GE+ +EPGYDPSK+G+ +W+YAS+KFGKV +E+
Sbjct: 73   EYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGYDPSKKGENEWRYASVKFGKVALEK 132

Query: 3532 PKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVETHVQVYTKKLVRSDKFKTGTE 3353
            P FWSG         +   +LPRHARLQNMTYS +M V   V+VYT+K+VRSDKFKTG +
Sbjct: 133  PTFWSGA--------DEHKMLPRHARLQNMTYSSKMKVNVSVEVYTRKVVRSDKFKTGKD 184

Query: 3352 QYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDCDFDHGGYFIVKGAEKTFIAQE 3173
            QYVDKE+   D R+I IG +PVMVKS+LCWM  AEK DCDFDHGGYF++KGAEK FIAQE
Sbjct: 185  QYVDKEVLNTDNRNITIGSLPVMVKSDLCWMKTAEKGDCDFDHGGYFLIKGAEKVFIAQE 244

Query: 3172 QICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFENMGGGEKTLSVYFVVTEMPVW 2993
            QICL+RLW+S+   W  +Y+   KR R+ ++LV     E++   +K L+VYF+ TE+P+W
Sbjct: 245  QICLKRLWISNIQGWTVSYKSEIKRNRLIVRLVGLSALEDVKAEKKCLTVYFLSTEIPLW 304

Query: 2992 ILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDADKKCDGFRKGKNALNHIEKLLK 2813
            ILFFALG +SDKEV++LI     D +IVN   ASI+DAD+K +GFR+GK AL ++ + ++
Sbjct: 305  ILFFALGVTSDKEVIDLIGYGSNDARIVNIFFASIHDADEKTEGFRRGKEALEYVVRQIR 364

Query: 2812 NCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCLLEAYTGRRKMDNRDDFRNKXX 2633
              +FPP E+ E+    +LFP+L   +QKARFLGYMVKCLL+AY G+RK +N D FRNK  
Sbjct: 365  GTRFPPGEN-EDFFLLYLFPTLHSLRQKARFLGYMVKCLLQAYNGQRKCNNWDSFRNKRF 423

Query: 2632 XXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQIEHYLDASIVTNGLSRAFSTGA 2453
                      LKVH+ HA RRM KA+Q+DLYGDR+++ IEHYLDASIVTNGLSRAFSTGA
Sbjct: 424  ELAKELLERELKVHIAHARRRMAKALQKDLYGDRDVRPIEHYLDASIVTNGLSRAFSTGA 483

Query: 2452 WSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSYTGRVGDARYPHPSHWGKICFL 2273
            WSHPYKRMER+SGVVA L + NPLQ   D+RKTR  V YTG+VGDAR+PHPSHWG++CFL
Sbjct: 484  WSHPYKRMERISGVVANLGRANPLQTMVDLRKTRYHVQYTGKVGDARFPHPSHWGRVCFL 543

Query: 2272 STPDGENCGLVKNLASLGLVSTTNLEPLLDKLFDCGMNELVDDTSSLLLGEHKIFLDGEW 2093
            STPDGENCGLVKNLA+ GLVS   LEPL+DKL   GM ++ +D+ S L  + K+FL+GEW
Sbjct: 544  STPDGENCGLVKNLATTGLVSVNILEPLIDKLIARGMEKVPEDSHSDLDEKDKVFLNGEW 603

Query: 2092 VGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHREVRIFSDAGRILRPLLVVENLRKI 1913
            VG CEDS+ FV +LR +RR  ++P QVEIK D Q +EVRIFSDAGRILRPLLVV+NL KI
Sbjct: 604  VGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDAGRILRPLLVVQNLHKI 663

Query: 1912 RFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGIGYLFNADKENPQRRYTHCELDMSF 1733
               KGG+ +FQ+LLD+           EDC TAWGI +L +        +YTHCELDMSF
Sbjct: 664  EAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSGVDGKQSLKYTHCELDMSF 723

Query: 1732 LLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPSIRTDTNIHQLYYPQRPLFRT 1553
            LLGLSCGIIP+ANHDHARRVLYQ++KHSQQAIGF TTNP+IR DT  HQLYYPQRPLFRT
Sbjct: 724  LLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPNIRVDTLSHQLYYPQRPLFRT 783

Query: 1552 ILSECLGKSTYTR-HKGMLPRPEYYNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 1376
            + S+CLGK   TR H G++P+PE YNGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFRS
Sbjct: 784  VTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 843

Query: 1375 EHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIGRVDSLDDDGFPYIGANLQTGDIVI 1196
            EHIRSYKA+VDNKE   K+ K +D++NFGK+ SKIGRVDSLDDDGFP+IGANLQ+GDIVI
Sbjct: 844  EHIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKIGRVDSLDDDGFPFIGANLQSGDIVI 903

Query: 1195 GKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQK 1016
            G+ AESG D+S+KLKHTERGMVQKV+LS+ND+GKNFAVVSLRQVRSPCLGDKFSSMHGQK
Sbjct: 904  GRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQK 963

Query: 1015 GVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAVGGVLKHATPF 836
            GVLGFLESQENFPFTR+GIVPDIVINPH+FPSRQTPGQLLEAALGKGIA GG +K+ATPF
Sbjct: 964  GVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEAALGKGIACGGSMKYATPF 1023

Query: 835  SALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRSLVFMGPTFYQRLTHMAEDKVKFRN 656
            S LSV+AIT QL   GFSRWG+ERVYNGRTGEM+RSL+FMGPTFYQRL HMAEDKVKFRN
Sbjct: 1024 STLSVEAITNQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDKVKFRN 1083

Query: 655  TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFKLSDCSQIHICRKCK 476
            TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANLHERLF LSD SQ+HIC+KCK
Sbjct: 1084 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICQKCK 1143

Query: 475  NMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASVPYGAKLLAQELFSMNISLKFETEVC 296
            N+ANVIQR V GGRKIRGP+CR+C+S + IVK +VPYGAKLL QELFSM ISLKFET +C
Sbjct: 1144 NVANVIQRAVPGGRKIRGPYCRVCESVDEIVKVNVPYGAKLLCQELFSMGISLKFETRLC 1203


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1181

 Score = 1647 bits (4265), Expect = 0.0
 Identities = 812/1159 (70%), Positives = 942/1159 (81%), Gaps = 1/1159 (0%)
 Frame = -2

Query: 3772 ELGEDXXXXXXXXXXXXXFEQYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSK 3593
            ELG++             F++YGLISHQINSYN FI  GLQ+VFDS GE+++EPGYD SK
Sbjct: 38   ELGKETLQSFCKKAASLFFDEYGLISHQINSYNAFINSGLQRVFDSFGEVAVEPGYDSSK 97

Query: 3592 RGDGDWKYASIKFGKVNVERPKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVET 3413
            + DG+W+ AS++FGKV ++RP FW G    AE      N+ PRHARLQNMTYS RM +  
Sbjct: 98   QKDGEWRRASVRFGKVTLDRPSFWGGTSSDAEH-----NMFPRHARLQNMTYSARMKIHV 152

Query: 3412 HVQVYTKKLVRSDKFKTGTEQYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDCD 3233
            +VQVYT+ + RSDKFKTG ++ V K +   + R+I+IGRIPVMVKS+LCW++  EK DCD
Sbjct: 153  NVQVYTQTVGRSDKFKTGIDKVVQKNVVHTENREIIIGRIPVMVKSDLCWLTTVEKGDCD 212

Query: 3232 FDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFEN 3053
            FDHGGYF++KGAEK FIAQEQIC++RLW+S+S  W  +Y+   KR R+ ++LV+  + E 
Sbjct: 213  FDHGGYFLIKGAEKVFIAQEQICMKRLWISNSQGWTVSYKSEVKRNRLIVRLVELSKLEY 272

Query: 3052 MGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDADK 2873
            + G +K L VYF+ TE+P+WILFFALG  SDKEV++LID    D  IVN   ASI+DAD+
Sbjct: 273  IKGEKKGLCVYFLSTEIPLWILFFALGVRSDKEVIDLIDYASNDASIVNIFFASIHDADE 332

Query: 2872 KCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCLL 2693
            KC+ FR+   AL++++KLLK  +FPP ES+E+ I  +LFP L   + KARFLGYMVKCLL
Sbjct: 333  KCEHFRREDRALDYVDKLLKKTRFPPKESIEDAISAYLFPRLNSRRHKARFLGYMVKCLL 392

Query: 2692 EAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQIE 2513
            EAYTG RK DNRD FRNK            LKVH+ HA RRM KA+QRDLYGDR++  IE
Sbjct: 393  EAYTGHRKCDNRDSFRNKRFELASELLERELKVHVSHALRRMTKALQRDLYGDRDVHPIE 452

Query: 2512 HYLDASIVTNGLSRAFSTGAWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSYT 2333
            HYLDASIVTNGL+RAFSTGAW HP+K MERVSGVV  L + NPLQ   D+RKTRQQV YT
Sbjct: 453  HYLDASIVTNGLTRAFSTGAWCHPFKWMERVSGVVGNLGRANPLQTMIDLRKTRQQVLYT 512

Query: 2332 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLFDCGMNEL 2153
            G+VGDARYPHPSHWG++CFLSTPDGENCGLVKNLA  G+VST   E L+DKLFD GM +L
Sbjct: 513  GKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNLAVTGVVSTNISESLVDKLFDSGMEKL 572

Query: 2152 VDDTSSLLLGEHKIFLDGEWVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHREVRI 1973
            VDDT + L G+HK+FL+GEWVG CEDS  FV +LR+MRR  E+P+QVEIK D Q REVRI
Sbjct: 573  VDDTYTKLDGKHKVFLNGEWVGVCEDSCLFVGELRSMRRRRELPYQVEIKRDEQQREVRI 632

Query: 1972 FSDAGRILRPLLVVENLRKIRFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGIGYLF 1793
            FSDAGRILRPLLVVENL KI+  KGG+  F +LLD+           EDC TAWGI +L 
Sbjct: 633  FSDAGRILRPLLVVENLDKIKAFKGGNYIFTSLLDKGIIEFIGTEEEEDCCTAWGIKFLL 692

Query: 1792 NADKENPQ-RRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNP 1616
             AD E  Q  +Y+HCELDMSFLLGLSCGIIP+ANHDHARRVLYQ++KHSQQAIGFSTTNP
Sbjct: 693  -ADIEGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNP 751

Query: 1615 SIRTDTNIHQLYYPQRPLFRTILSECLGKSTYTRHKGMLPRPEYYNGQCAIVAVNVHLGY 1436
            +IR DT  HQL+YPQRPLFRT++S+CL          +LP+PE +NGQ AIVAVNVHLGY
Sbjct: 752  NIRVDTLSHQLHYPQRPLFRTMISDCL----------VLPKPELFNGQNAIVAVNVHLGY 801

Query: 1435 NQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIGRVDS 1256
            NQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE + K+ K EDSI FGK+QSKIGRVDS
Sbjct: 802  NQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKELTDKRRKSEDSITFGKIQSKIGRVDS 861

Query: 1255 LDDDGFPYIGANLQTGDIVIGKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNFAVVS 1076
            LDDDGFP+IGAN+Q+GDIVIGK AESG D+SVKLKHTERGMVQKV+LS+ND+GKNFAVVS
Sbjct: 862  LDDDGFPFIGANMQSGDIVIGKCAESGADHSVKLKHTERGMVQKVVLSSNDEGKNFAVVS 921

Query: 1075 LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPGQLL 896
            LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT +G+VPDIVINPHAFPSRQTPGQLL
Sbjct: 922  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLL 981

Query: 895  EAALGKGIAVGGVLKHATPFSALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRSLVFM 716
            EAALGKGIA GG  ++ATPFS LSVD I  QL    FSRWG+ERVYNGRTGEM+RSL+FM
Sbjct: 982  EAALGKGIACGGSKRYATPFSTLSVDDIIDQLHRAKFSRWGNERVYNGRTGEMVRSLIFM 1041

Query: 715  GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 536
            GPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANL
Sbjct: 1042 GPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANL 1101

Query: 535  HERLFKLSDCSQIHICRKCKNMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASVPYGAK 356
            HERLF LSD S++HIC+KCKN+ANVIQR V GGRKIRGP+CR+C+S + +VK SVPYGAK
Sbjct: 1102 HERLFTLSDSSEMHICQKCKNVANVIQRGVPGGRKIRGPYCRVCESVDDLVKVSVPYGAK 1161

Query: 355  LLAQELFSMNISLKFETEV 299
            LL QELFSM ISLKF+T V
Sbjct: 1162 LLCQELFSMGISLKFDTRV 1180


>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
            arietinum]
          Length = 1199

 Score = 1640 bits (4247), Expect = 0.0
 Identities = 796/1160 (68%), Positives = 942/1160 (81%), Gaps = 1/1160 (0%)
 Frame = -2

Query: 3772 ELGEDXXXXXXXXXXXXXFEQYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSK 3593
            ELG+D             F++YGLISHQINSYN F   GLQ  FDS G++++ PG+DPSK
Sbjct: 46   ELGDDMVRYFCKKASIMFFDEYGLISHQINSYNQFATSGLQNTFDSFGDLTVTPGFDPSK 105

Query: 3592 RGDGD-WKYASIKFGKVNVERPKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVE 3416
            +GD + ++YAS+KFGKV ++RP FW GE     G  + + +LPRHARLQ MTY+ +M V 
Sbjct: 106  KGDNEHYRYASVKFGKVTLDRPMFWCGE-----GNTQEMKMLPRHARLQRMTYASKMKVN 160

Query: 3415 THVQVYTKKLVRSDKFKTGTEQYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDC 3236
              VQVY  K VRSDKFKTG E+Y+D+E+  ++ R+I IGR+PVMVKS+LCWM+  EK DC
Sbjct: 161  VQVQVYIPKKVRSDKFKTGKEEYIDREIIMDENREITIGRLPVMVKSDLCWMNGVEKGDC 220

Query: 3235 DFDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFE 3056
            +FDHGGYF++KGAEK FIAQEQI L+RLW+++ P W  AY+   KR R+ +KLV+    E
Sbjct: 221  EFDHGGYFLIKGAEKIFIAQEQIFLKRLWVTNVPYWAVAYKSQMKRNRMVVKLVENTTVE 280

Query: 3055 NMGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDAD 2876
             +  GEK L+VYF+  E+PVW+LFFALG +SDK++V+LID    D +I N L ASI +AD
Sbjct: 281  GIKNGEKVLTVYFLSVEIPVWLLFFALGVTSDKQIVDLIDYGEGDGRIQNILFASIREAD 340

Query: 2875 KKCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCL 2696
            +KC+ FR+GKNAL +IE+ +K  +FPP ES++EC+  ++FP+++G  +KAR+L YMVK L
Sbjct: 341  EKCEQFRRGKNALLYIEERVKGVQFPPPESIDECLNMYVFPNIKGLNRKARYLAYMVKVL 400

Query: 2695 LEAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQI 2516
            L AYTGRRK DNRDDFRNK            LKVH+ HA +RM KA+QRDLYGDR++ QI
Sbjct: 401  LLAYTGRRKTDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRDVHQI 460

Query: 2515 EHYLDASIVTNGLSRAFSTGAWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSY 2336
            EHYLDASI+TNGL RAFSTGAW+HPYKRMER+SGVVATL +TNPLQ  A++R+TRQQV Y
Sbjct: 461  EHYLDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQVQY 520

Query: 2335 TGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLFDCGMNE 2156
            TG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKN+A  GLVST   E +L +LF CGM E
Sbjct: 521  TGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTNVTESILPQLFACGMEE 580

Query: 2155 LVDDTSSLLLGEHKIFLDGEWVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHREVR 1976
            LVDDT+++L  + K+FL+G+WVG C DS SFV +LRN RR NE+PHQVEIK D    EVR
Sbjct: 581  LVDDTTAVLGNKDKVFLNGDWVGVCSDSASFVAELRNRRRKNELPHQVEIKRDPSQEEVR 640

Query: 1975 IFSDAGRILRPLLVVENLRKIRFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGIGYL 1796
            I SDAGRILRPLLVV NL KI+  K    SFQ+LLD            EDC TAWG+ YL
Sbjct: 641  ILSDAGRILRPLLVVSNLLKIKGSKSDPKSFQSLLDNGLIELIGPEEEEDCKTAWGVPYL 700

Query: 1795 FNADKENPQRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNP 1616
            F  + ++  + YTHCELDMSFLLGLSC ++P+ANHDHARRVLYQS+KHS QAIGFSTTNP
Sbjct: 701  FGKEGKSSVK-YTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNP 759

Query: 1615 SIRTDTNIHQLYYPQRPLFRTILSECLGKSTYTRHKGMLPRPEYYNGQCAIVAVNVHLGY 1436
             IR D   HQL+YPQ+PLF+T+ S+CLGK  Y     +LP+ E+YNGQ AIVAVNVHLGY
Sbjct: 760  DIRVDALSHQLFYPQKPLFQTMTSDCLGKPGYLGPSKLLPKSEFYNGQNAIVAVNVHLGY 819

Query: 1435 NQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIGRVDS 1256
            NQEDSLVMNRASL+RGMFRSEHIRSYKAE +NKE + KK KPED +NFGK+QSKIGRVDS
Sbjct: 820  NQEDSLVMNRASLQRGMFRSEHIRSYKAENENKESTEKKRKPEDIVNFGKIQSKIGRVDS 879

Query: 1255 LDDDGFPYIGANLQTGDIVIGKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNFAVVS 1076
            LDDDGFP++GANLQ GDI+IG+ A+SG D+S+KLKHTERG VQKV+LS+ND+GKNFAVVS
Sbjct: 880  LDDDGFPFVGANLQIGDIIIGRCADSGADHSIKLKHTERGYVQKVVLSSNDEGKNFAVVS 939

Query: 1075 LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPGQLL 896
            LRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFT++GIVPDIVINPHAFPSRQTPGQLL
Sbjct: 940  LRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLL 999

Query: 895  EAALGKGIAVGGVLKHATPFSALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRSLVFM 716
            EAALGKGIA  G L++ATPFS  SV+AIT QL   GFSRWG+ERVYNGRTGEM+RSL+FM
Sbjct: 1000 EAALGKGIACVGSLRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFM 1059

Query: 715  GPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 536
            GPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANL
Sbjct: 1060 GPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANL 1119

Query: 535  HERLFKLSDCSQIHICRKCKNMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASVPYGAK 356
            +ERLF LSD SQIHIC KCKN+ANVI RPV GGRKIRGP+CR C+SA+ IV A VPYGAK
Sbjct: 1120 YERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVAHVPYGAK 1179

Query: 355  LLAQELFSMNISLKFETEVC 296
            LL QELFSM I+LKFETE+C
Sbjct: 1180 LLCQELFSMGINLKFETELC 1199


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 1637 bits (4239), Expect = 0.0
 Identities = 797/1164 (68%), Positives = 939/1164 (80%), Gaps = 5/1164 (0%)
 Frame = -2

Query: 3772 ELGEDXXXXXXXXXXXXXFEQYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSK 3593
            +LGE              F QYGLISHQINSYNDFIK G+QK FD  G+I ++PGYDPSK
Sbjct: 42   DLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSK 101

Query: 3592 RGDGDWKYASIKFGKVNVERPKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVET 3413
            +GDG+W+YA++KFGKV +++PKFW G    A  G+E+ N+LPRHARLQNMTYS RM +  
Sbjct: 102  KGDGEWRYATVKFGKVTLDKPKFWGG----AASGKEY-NMLPRHARLQNMTYSSRMKINI 156

Query: 3412 HVQVYTKKLVRSDKFKTGTEQYVDKELEK--EDKRDIVIGRIPVMVKSELCWMSQAEKHD 3239
             +++YT+KLV SDKFKTG +QYVDKE  +   D RD+ IGR+PVMV S+LCWM   +K D
Sbjct: 157  SLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKRD 216

Query: 3238 CDFDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRF 3059
            C+FD GGYF++KGAEK FIAQEQICLRRLW+S+   W  AYR   KR R+ ++LV+  + 
Sbjct: 217  CEFDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKS 276

Query: 3058 ENMGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASI--Y 2885
            E++   EK L+VYF+ TE+PVWILFFALG SSDKE+V+LID    D  ++N L AS+   
Sbjct: 277  EDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREV 336

Query: 2884 DADKKCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMV 2705
            D D K   FR+GK AL  ++  ++   FPP + +E+C+  +LF SL+G KQK  FLGYMV
Sbjct: 337  DNDDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMV 396

Query: 2704 KCLLEAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDREL 2525
            KCLL+AYTGRRK DNRDDFRNK            LKVH+ HA RRM KA+QRDLYGDR++
Sbjct: 397  KCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQV 456

Query: 2524 QQIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQ 2345
              IEHYLDASI+TNGLSRAFSTGAW+H +KRMER+SGVVATL + NPLQ  A++R+TRQQ
Sbjct: 457  HPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQ 516

Query: 2344 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLFDCG 2165
            V+YTG+VGDARYPHPSHWG++CFLSTPDGENCGL+KNL+  GLVS    + +   LF CG
Sbjct: 517  VAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNTKKSITPTLFRCG 576

Query: 2164 MNELVDDTSSLLLGEHKIFLDGEWVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHR 1985
            M  LVD+TS+   G+++IFLDGEWVG CEDS SFV  +R  RR N   HQVE+K D Q +
Sbjct: 577  MENLVDNTSTSFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQLK 636

Query: 1984 EVRIFSDAGRILRPLLVVENLRKIRFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGI 1805
            EVRIFSDAGRILRPLLVVENL +I   KG + +FQ+LLD+           EDC  AW I
Sbjct: 637  EVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSI 696

Query: 1804 GYLFNADKENPQRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFST 1625
             +L    ++    +Y+HCELDMSFLLGLSCG++P+ANHDHARR L+QS+KHS QAIGFS 
Sbjct: 697  KHLM---EDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSP 753

Query: 1624 TNPSIRTDTNIHQLYYPQRPLFRTILSECLGKSTY-TRHKGMLPRPEYYNGQCAIVAVNV 1448
            TN + R DT  HQL+YPQRPLFRT+ ++CLG   Y + H G+LP+PE+YNGQ AIVAVNV
Sbjct: 754  TNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNV 813

Query: 1447 HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIG 1268
            HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE S K+ K +D+INFGK QSKIG
Sbjct: 814  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIG 873

Query: 1267 RVDSLDDDGFPYIGANLQTGDIVIGKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNF 1088
            RVDSLDDDGFPYIGANLQ+GDIVIG+ AESG D+S+KLKHTE+GMVQKV+LS+NDDGKN+
Sbjct: 874  RVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNY 933

Query: 1087 AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTP 908
            AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPSRQTP
Sbjct: 934  AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 993

Query: 907  GQLLEAALGKGIAVGGVLKHATPFSALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRS 728
            GQLLEAALGKGIA GG LK+ATPFS  SVDAIT QL   GFSRWG ERVYNGRTGEM+RS
Sbjct: 994  GQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRS 1053

Query: 727  LVFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 548
            L+FMGPTFYQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA
Sbjct: 1054 LIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1113

Query: 547  AANLHERLFKLSDCSQIHICRKCKNMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASVP 368
            +ANLHERLF LSD SQ+H+C+KCKN+A+VIQR V GGRK+RGP+CR+C+S + IV+ +VP
Sbjct: 1114 SANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKMRGPYCRVCESFDDIVRVNVP 1173

Query: 367  YGAKLLAQELFSMNISLKFETEVC 296
            YGAKLL QELFSM I+LKFET++C
Sbjct: 1174 YGAKLLCQELFSMGINLKFETQLC 1197


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1632 bits (4226), Expect = 0.0
 Identities = 798/1164 (68%), Positives = 947/1164 (81%), Gaps = 5/1164 (0%)
 Frame = -2

Query: 3772 ELGEDXXXXXXXXXXXXXFEQYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSK 3593
            ELGED             F++YGLISHQINS+N F+  GLQ  FDS G++ + PG+DPSK
Sbjct: 48   ELGEDMVKYWCKKASMLFFDEYGLISHQINSFNHFVAIGLQNTFDSFGDLVVTPGFDPSK 107

Query: 3592 RGDGD-WKYASIKFGKVNVERPKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVE 3416
            +G+ + ++YAS+KFGKV +++P FW GE     G  +   +LPRHAR+Q MTY+ ++ ++
Sbjct: 108  KGENEHFRYASVKFGKVKLDKPMFWGGE-----GNAQEFKMLPRHARIQRMTYASKVKIQ 162

Query: 3415 THVQVYTKKLVRSDKFKTGTEQYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDC 3236
              VQVY  K VRSDKFKTG E+++D+E+ KED+R+I+IGR+PVMVKS+LCWM  AEK D 
Sbjct: 163  VKVQVYVPKKVRSDKFKTGKEEFLDREIMKEDEREIIIGRLPVMVKSDLCWMKDAEKDDD 222

Query: 3235 DFDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFE 3056
            +FDHGGYFIVKGAEKTFIAQEQ+ L+RLW+ +SP WM AY+   KR R+ +KLV   R E
Sbjct: 223  EFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRSE 282

Query: 3055 NMGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDAD 2876
             +  G+  L+VYF+  E+PVW+LFFALG SSDKE+V+LI     D +I N L AS+ DAD
Sbjct: 283  EVENGDMCLTVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVRDAD 342

Query: 2875 KKCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCL 2696
            +KC  FR+ +NA+ ++EK +K+ +FPP+ES++EC++ ++FP + G  +KARFL YMVK L
Sbjct: 343  EKCGAFRRVRNAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMVKGL 402

Query: 2695 LEAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQI 2516
            L AYTGRRK DNRDDFRNK            LKVH+ HA +RM KA+QRDLYGDR+++ I
Sbjct: 403  LLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHVAHARKRMAKALQRDLYGDRDVRPI 462

Query: 2515 EHYLDASIVTNGLSRAFSTGAWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSY 2336
            EHYLDASI+TNGL RAFSTGAWSHPYKRMER+SGVVA + +TNPLQ  A++R+ RQQV Y
Sbjct: 463  EHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQVQY 522

Query: 2335 TGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVST--TNL-EPLLDKLFDCG 2165
            TG+VGDARYPHPSHWGK+CFL+TPDGENCGLVKNL+  GLVST  T++ E +L KL DCG
Sbjct: 523  TGKVGDARYPHPSHWGKVCFLTTPDGENCGLVKNLSVTGLVSTDVTDVTESILLKLVDCG 582

Query: 2164 MNELVDDTSSLLLGEHKIFLDGEWVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHR 1985
            M ELVDDTS+ L    K+ L+G+WVG C DS SFV +LR+ RR NE+PHQVEIK D+   
Sbjct: 583  MQELVDDTSTHLGSMDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQH 642

Query: 1984 EVRIFSDAGRILRPLLVVENLRKIRFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGI 1805
            EVRI+SDAGRILRPLLVV NL KI+  K    SFQ+LLD+           EDC TAWG+
Sbjct: 643  EVRIYSDAGRILRPLLVVGNLLKIKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCTAWGV 702

Query: 1804 GYLFNADKENPQRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFST 1625
             YLF  + +   + YTHCELDMSFLLGLSC ++P+ANHDHARRVLYQS+KHS QAIGFST
Sbjct: 703  EYLFGKEGKRSVK-YTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFST 761

Query: 1624 TNPSIRTDTNIHQLYYPQRPLFRTILSECLGKSTYTRHKGMLP-RPEYYNGQCAIVAVNV 1448
            TNP+IR DT  HQL+YPQ+PLFRT+ S+CLGK  ++  +  +P + E+YNGQ AIVAVNV
Sbjct: 762  TNPNIRVDTLSHQLHYPQKPLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVAVNV 821

Query: 1447 HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIG 1268
            HLGYNQEDSLVMNRASL+RGMFRSEHIRSYK+E+DNKE S KK KPED +NF K+QSKIG
Sbjct: 822  HLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIG 881

Query: 1267 RVDSLDDDGFPYIGANLQTGDIVIGKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNF 1088
            RVDSLDDDGFPY+GANLQ+GDI+IGK AESG D SVKLKHTERG VQKV+LS+ND+GKNF
Sbjct: 882  RVDSLDDDGFPYVGANLQSGDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNF 941

Query: 1087 AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTP 908
            AVVSLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFTR+GIVPDIVINPHAFPSRQTP
Sbjct: 942  AVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTP 1001

Query: 907  GQLLEAALGKGIAVGGVLKHATPFSALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRS 728
            GQLLEAALGKGIA GG+LK ATPFS  SVDAIT+QL   GFSRWG+ERVYNGRTGEM+RS
Sbjct: 1002 GQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRS 1061

Query: 727  LVFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 548
            L+FMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA
Sbjct: 1062 LIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1121

Query: 547  AANLHERLFKLSDCSQIHICRKCKNMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASVP 368
            +ANL+ERLF LSD SQIHIC KCK +ANVI RPV GGRKIRGP+CR C+SA+ IV A VP
Sbjct: 1122 SANLYERLFTLSDSSQIHICSKCKKVANVILRPVSGGRKIRGPYCRHCESADDIVVAHVP 1181

Query: 367  YGAKLLAQELFSMNISLKFETEVC 296
            YGAKLL QELFSM I+LKFET++C
Sbjct: 1182 YGAKLLCQELFSMGINLKFETQLC 1205


>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1631 bits (4224), Expect = 0.0
 Identities = 798/1167 (68%), Positives = 946/1167 (81%), Gaps = 8/1167 (0%)
 Frame = -2

Query: 3772 ELGEDXXXXXXXXXXXXXFEQYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSK 3593
            ELGED             F +YGLISHQINS+N FI  GLQK F+S G++ + PG+DPSK
Sbjct: 45   ELGEDIVKYWCKKASMLFFNEYGLISHQINSFNHFIHTGLQKTFESFGDLVVTPGFDPSK 104

Query: 3592 RGDGD-WKYASIKFGKVNVERPKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVE 3416
            +G+ + ++YAS+KFG V +++P FW GE     G  +   +LPRHAR+Q MTY+ ++ ++
Sbjct: 105  KGENEHFRYASVKFGNVKLDKPMFWGGE-----GNAQEFKMLPRHARIQRMTYASKVKIQ 159

Query: 3415 THVQVYTKKLVRSDKFKTGTEQYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDC 3236
              VQVY  K VRSDKFKTG  +++D+E+ KED+R+I+IGR+PVMVKS+LCWM +AEK D 
Sbjct: 160  VKVQVYVPKKVRSDKFKTGKAEFLDREVMKEDEREIIIGRLPVMVKSDLCWMKEAEKEDD 219

Query: 3235 DFDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFE 3056
            +FDHGGYFIVKGAEKTFIAQEQ+ L+RLW+ +SP WM AY+   KR R+ +KLV   R E
Sbjct: 220  EFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRGE 279

Query: 3055 NMGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDAD 2876
             +  G+ +L+VYF+  E+PVW+LFFALG SSDKE+V+LI     D +I N L AS+ DAD
Sbjct: 280  EVENGDMSLAVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVRDAD 339

Query: 2875 KKCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCL 2696
            +KC  FR+G++A+ ++EK +K+ +FPP+ES++EC++ ++FP + G  +KARFL YMVK L
Sbjct: 340  EKCGAFRRGRHAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMVKGL 399

Query: 2695 LEAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQI 2516
            L AYTGRRK DNRDDFRNK            LKVH+ HA +RM KA+QRDLYGDR+++ I
Sbjct: 400  LLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHIAHARKRMAKALQRDLYGDRDVRPI 459

Query: 2515 EHYLDASIVTNGLSRAFSTGAWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSY 2336
            EHYLDASI+TNGL RAFSTGAWSHPYKRMER+SGVVA + +TNPLQ  A++R+ RQQV Y
Sbjct: 460  EHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQVQY 519

Query: 2335 TGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVST---TNLEPLLDKLFDCG 2165
            TG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA  GLVST      E +L KL DCG
Sbjct: 520  TGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTDVSAVSEYILPKLLDCG 579

Query: 2164 MNELVDDTSSLLLGEHKIFLDGEWVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHR 1985
            M ELVDDTS+ L  + K+ L+G+WVG C DS SFV +LR+ RR NE+PHQVEIK D+   
Sbjct: 580  MEELVDDTSTHLGNKDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQH 639

Query: 1984 EVRIFSDAGRILRPLLVVENLRKIRFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGI 1805
            EVRI+SDAGRILRPLLVV NL KI+  K    SFQ+LLD+           EDC TAWG+
Sbjct: 640  EVRIYSDAGRILRPLLVVGNLLKIKGFKSDCNSFQSLLDKGVIELIGPEEEEDCCTAWGV 699

Query: 1804 GYLFNADKENPQRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFST 1625
             YLF  + +   + YTHCELDMSFLLGLSC ++P+ANHDHARRVLYQS+KHS QAIGFST
Sbjct: 700  EYLFGKEGKRSVK-YTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFST 758

Query: 1624 TNPSIRTDTNIHQLYYPQRPLFRTILSECLGKSTYTRHKGML----PRPEYYNGQCAIVA 1457
            TNP+IR DT  HQL+YPQ+PLFRT+ S+CLGK   +  +  +    P+ E+YNGQ AIVA
Sbjct: 759  TNPNIRVDTLSHQLHYPQKPLFRTMASDCLGKPDNSLGQNKISKIPPKAEFYNGQNAIVA 818

Query: 1456 VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQS 1277
            VNVHLGYNQEDSLVMNRASL+RGMFRSEHIRSYK+E+DNKE S KK KPED +NF K+QS
Sbjct: 819  VNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQS 878

Query: 1276 KIGRVDSLDDDGFPYIGANLQTGDIVIGKYAESGTDYSVKLKHTERGMVQKVILSANDDG 1097
            KIGRVDSLDDDGFPY+GANLQ+GDI+IGK AESG D SVKLKHTERG VQKV+LS+ND+G
Sbjct: 879  KIGRVDSLDDDGFPYVGANLQSGDIIIGKGAESGADNSVKLKHTERGYVQKVVLSSNDEG 938

Query: 1096 KNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSR 917
            KNFAVVSLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFTR+GIVPDIVINPHAFPSR
Sbjct: 939  KNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSR 998

Query: 916  QTPGQLLEAALGKGIAVGGVLKHATPFSALSVDAITQQLKSCGFSRWGDERVYNGRTGEM 737
            QTPGQLLEAALGKGIA GG+L+ ATPFS  SVDAIT+QL   GFSRWG+ERVYNGRTGEM
Sbjct: 999  QTPGQLLEAALGKGIACGGILRQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEM 1058

Query: 736  IRSLVFMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 557
            +RSL+FMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA
Sbjct: 1059 VRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1118

Query: 556  HGAAANLHERLFKLSDCSQIHICRKCKNMANVIQRPVLGGRKIRGPFCRICDSAEHIVKA 377
            HGA+ANL+ERLF LSD SQIHIC KCKN+ANVI RPV GGRKIRGP+CR C+SA+ IV A
Sbjct: 1119 HGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRHCESADDIVVA 1178

Query: 376  SVPYGAKLLAQELFSMNISLKFETEVC 296
             VPYGAKLL QELFSM I+LKFET++C
Sbjct: 1179 HVPYGAKLLCQELFSMGINLKFETQLC 1205


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score = 1626 bits (4211), Expect = 0.0
 Identities = 791/1019 (77%), Positives = 883/1019 (86%), Gaps = 1/1019 (0%)
 Frame = -2

Query: 3352 QYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDCDFDHGGYFIVKGAEKTFIAQE 3173
            QYVDK+   ED RD++IGRIPVM+KS+LCWM+  EK DCDFDHGGYF++KGAEKTFIAQE
Sbjct: 1    QYVDKDPISEDNRDVIIGRIPVMLKSDLCWMNGVEKSDCDFDHGGYFLIKGAEKTFIAQE 60

Query: 3172 QICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFENMGGGEKTLSVYFVVTEMPVW 2993
            QICL+RLW+S+SP+W  AYR  +KRKRVY+KL + P+ E++ GGEK LSVYF   E P+W
Sbjct: 61   QICLKRLWVSNSPSWTVAYRDVSKRKRVYIKL-EPPKREHIRGGEKVLSVYFSAVEFPIW 119

Query: 2992 ILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDADKKCDGFRKGKNALNHIEKLLK 2813
            ILFFALGASSDKEVVNLID D +D++IVN LIASIYDAD+ C GFR+G+NA+N I K ++
Sbjct: 120  ILFFALGASSDKEVVNLIDCDGEDSRIVNVLIASIYDADENCKGFRRGRNAINDIMKKIE 179

Query: 2812 NCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCLLEAYTGRRKMDNRDDFRNKXX 2633
            NCKFPP ES+E  + N+LFP+L GF+QKARFLGYMVKCLL+AYTGRRK+DNRDDFRNK  
Sbjct: 180  NCKFPPQESIEAFLSNYLFPNLSGFRQKARFLGYMVKCLLQAYTGRRKIDNRDDFRNKRL 239

Query: 2632 XXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQIEHYLDASIVTNGLSRAFSTGA 2453
                      L+VH+KHAERRMVKAMQRDLYG+R +  IEHYLDASI+TNGLSRAFSTGA
Sbjct: 240  ELAGELLERELRVHVKHAERRMVKAMQRDLYGERVIHAIEHYLDASIITNGLSRAFSTGA 299

Query: 2452 WSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSYTGRVGDARYPHPSHWGKICFL 2273
            WSHPYK+MER+SGVVATLR+TNPLQ  ADMRKTRQQVSYTG+VGDARYPHPSHWGKICFL
Sbjct: 300  WSHPYKKMERISGVVATLRRTNPLQTIADMRKTRQQVSYTGKVGDARYPHPSHWGKICFL 359

Query: 2272 STPDGENCGLVKNLASLGLVSTTNLEPLLDKLFDCGMNELVDDTSSLLLGEHKIFLDGEW 2093
            STPDGENCGLVKNLA  GLVST   E  LDKL D GM +LVDDTS+LL G+ K+FLDG W
Sbjct: 360  STPDGENCGLVKNLAITGLVSTNIEEHFLDKLLDSGMEKLVDDTSTLLSGKVKVFLDGNW 419

Query: 2092 VGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHREVRIFSDAGRILRPLLVVENLRKI 1913
            VG C DS SFV  LR  RR  EVPHQVEIK D QHREVR+FSDAGRILRPLLVVENL KI
Sbjct: 420  VGVCGDSVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDAGRILRPLLVVENLGKI 479

Query: 1912 RFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGIGYLFNADKENPQRRYTHCELDMSF 1733
            +  KGGD SFQ+LLD+           EDC TAWGI YLF  ++     +YTHCELDMSF
Sbjct: 480  KASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAWGINYLFMENEAKATVKYTHCELDMSF 539

Query: 1732 LLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPSIRTDTNIHQLYYPQRPLFRT 1553
            LLGLS  IIP+ANHDHARRVLYQSEKHSQQA+GF+TTNP+IR DTN HQLYYPQRPLFRT
Sbjct: 540  LLGLSAAIIPFANHDHARRVLYQSEKHSQQAMGFNTTNPNIRVDTNTHQLYYPQRPLFRT 599

Query: 1552 ILSECLGKSTY-TRHKGMLPRPEYYNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 1376
            ++S+CLGK  Y   H G++PR EY+NGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRS
Sbjct: 600  MVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 659

Query: 1375 EHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIGRVDSLDDDGFPYIGANLQTGDIVI 1196
            EHIRSYKA+VDNKE  GKK K EDS+NFGK+QSKIGRVDSLDDDGFP+IGANLQ GDIV+
Sbjct: 660  EHIRSYKADVDNKESVGKKPKFEDSVNFGKVQSKIGRVDSLDDDGFPFIGANLQNGDIVV 719

Query: 1195 GKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQK 1016
            G+ AESG D+S+KLKHTERGMVQKV+LSAND+GKNFAVVSLRQVR+PCLGDKFSSMHGQK
Sbjct: 720  GRCAESGADHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQK 779

Query: 1015 GVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAVGGVLKHATPF 836
            GVLGFLESQENFPFT +GIVPDIV+NPHAFPSRQTPGQLLEAALGKGIA GG+ K+ATPF
Sbjct: 780  GVLGFLESQENFPFTIQGIVPDIVVNPHAFPSRQTPGQLLEAALGKGIACGGLQKYATPF 839

Query: 835  SALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRSLVFMGPTFYQRLTHMAEDKVKFRN 656
            S LSVDA+T QL   GFSRWG ERVYNGRTGEMI SLVFMGPTFYQRLTHM+EDKVKFRN
Sbjct: 840  STLSVDAVTDQLHRAGFSRWGSERVYNGRTGEMIHSLVFMGPTFYQRLTHMSEDKVKFRN 899

Query: 655  TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFKLSDCSQIHICRKCK 476
            TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF LSD SQ+HICRKC 
Sbjct: 900  TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKCN 959

Query: 475  NMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASVPYGAKLLAQELFSMNISLKFETEV 299
            N+ANVIQR V GGRKIRGP+CR C+S E IV+ +VPYGAKLLAQELFSM I++KF+TE+
Sbjct: 960  NIANVIQRAVPGGRKIRGPYCRFCESVEEIVRVNVPYGAKLLAQELFSMGITMKFDTEL 1018


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
            vesca subsp. vesca]
          Length = 1201

 Score = 1618 bits (4189), Expect = 0.0
 Identities = 787/1141 (68%), Positives = 923/1141 (80%), Gaps = 1/1141 (0%)
 Frame = -2

Query: 3715 EQYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSKRGDGDWKYASIKFGKVNVE 3536
            ++YGL+SHQINSYNDF++ G+Q+VFDS GEI +EP +DPSK+G+ DW++A+IKFGKV + 
Sbjct: 67   KEYGLLSHQINSYNDFVENGIQRVFDSFGEIVVEPNFDPSKKGNADWRFAAIKFGKVTLS 126

Query: 3535 RPKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVETHVQVYTKKLVRSDKFKTGT 3356
            +P FW G     E      N+LPRHARLQNMTYS RM V   VQVYT+ LV SDKFKTGT
Sbjct: 127  KPCFWGGSDSDKE-----YNMLPRHARLQNMTYSARMSVNITVQVYTQNLVESDKFKTGT 181

Query: 3355 EQYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDCDFDHGGYFIVKGAEKTFIAQ 3176
            EQ ++K     D RDI+IGRIPVMVKS LCWM   EK DC+FD GGYFI+ GAEKTFIAQ
Sbjct: 182  EQLLEKTTLSTDSRDIIIGRIPVMVKSNLCWMKGVEKGDCEFDQGGYFIINGAEKTFIAQ 241

Query: 3175 EQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFENMGGGEKTLSVYFVVTEMPV 2996
            EQ CL+RL +++S     AYR   KR R+ ++L    + EN+ G EK LSVYF+ TE+PV
Sbjct: 242  EQSCLKRLLITNSQGLTVAYRSEVKRHRLIIRLSGISKLENVEGVEKVLSVYFMSTEIPV 301

Query: 2995 WILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDADKKCDGFRKGKNALNHIEKLL 2816
            WI FFALG SSDKEV++LID  I+D  I N L ASI DAD++ D FR+G NAL ++E  +
Sbjct: 302  WIWFFALGVSSDKEVIDLIDYGIEDASISNILFASIRDADERKDDFRRGNNALRYVENAI 361

Query: 2815 KNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCLLEAYTGRRKMDNRDDFRNKX 2636
            K+  FPP ESVE+CI  +LFP+++G KQKARFLGYMVKCLL+   G RK DNRDDFRNK 
Sbjct: 362  KSTTFPPGESVEDCISMYLFPNMRGLKQKARFLGYMVKCLLQTSIGLRKCDNRDDFRNKR 421

Query: 2635 XXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQIEHYLDASIVTNGLSRAFSTG 2456
                       LK H+ HA R+M KA+QRDL GD  ++ +EHYLDASIVTNG+SRAFSTG
Sbjct: 422  LELAGELLERELKAHVSHARRKMAKALQRDLGGDHVVRPVEHYLDASIVTNGVSRAFSTG 481

Query: 2455 AWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSYTGRVGDARYPHPSHWGKICF 2276
            AW HP+KRMER+SGVVA + + NPLQ   DMRKTRQQV YTG+ GDARYPHPSHWGK+CF
Sbjct: 482  AWCHPFKRMERISGVVANIGRANPLQTMIDMRKTRQQVQYTGKAGDARYPHPSHWGKVCF 541

Query: 2275 LSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLFDCGMNELVDDTSSLLLGEHKIFLDGE 2096
            LSTPDGENCGLVKNLA+  LVS    EP+L KLF CG+ ELVDDT + L G+HK+FL+G+
Sbjct: 542  LSTPDGENCGLVKNLATTALVSINISEPILPKLFKCGIEELVDDTYTSLAGKHKVFLNGD 601

Query: 2095 WVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHREVRIFSDAGRILRPLLVVENLRK 1916
            WVG C DS  FV +LR +RRS ++PHQVEIK D    EVRIFSDAGRILRPLLVV+ L+K
Sbjct: 602  WVGICVDSHGFVTKLRRLRRSKKLPHQVEIKRDEHKGEVRIFSDAGRILRPLLVVQGLKK 661

Query: 1915 IRFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGIGYLFNADKENPQRRYTHCELDMS 1736
            I+  KG   +FQ  LD+           EDC TAW I YLF  +++    +YTHCELDMS
Sbjct: 662  IKAAKGEKHTFQDFLDKGIIEFIGAEEEEDCRTAWAIKYLF-MEEQGSVVKYTHCELDMS 720

Query: 1735 FLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPSIRTDTNIHQLYYPQRPLFR 1556
            FLLGLSCGIIP+ANHDHARRVLYQS+KHSQQAIG+STTNP++R DT  H L+YPQRPLFR
Sbjct: 721  FLLGLSCGIIPFANHDHARRVLYQSQKHSQQAIGYSTTNPNLRVDTLSHNLHYPQRPLFR 780

Query: 1555 TILSECLGKSTY-TRHKGMLPRPEYYNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFR 1379
            T++++ LGK  Y   H G +P+PEY+NGQ AIVAVNVHLGYNQEDS+VMNRASLERGMFR
Sbjct: 781  TMIADSLGKPGYPVGHNGFMPKPEYFNGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFR 840

Query: 1378 SEHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIGRVDSLDDDGFPYIGANLQTGDIV 1199
            SEHIRSYKAEV+NK    K+ KP++ +NFGK+QSK GRVD+LDDDGFP +GA+LQ+GDI+
Sbjct: 841  SEHIRSYKAEVENKLSLEKRRKPDECVNFGKIQSKFGRVDNLDDDGFPCVGASLQSGDII 900

Query: 1198 IGKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQ 1019
            IG+ +ESGTD+S+KLKHTERGMVQKV+LS+ND GKNFAVVSLRQVRSP LGDKFSSMHGQ
Sbjct: 901  IGRCSESGTDHSIKLKHTERGMVQKVVLSSNDAGKNFAVVSLRQVRSPSLGDKFSSMHGQ 960

Query: 1018 KGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAVGGVLKHATP 839
            KGVLGFLE QENFPFT +GIVPDIVINPHAFPSRQTPGQLLEAALGKGIA GG  ++ATP
Sbjct: 961  KGVLGFLEYQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKRYATP 1020

Query: 838  FSALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRSLVFMGPTFYQRLTHMAEDKVKFR 659
            FS LSVD IT QL   GFSRWG+ERVYNGRTGEM+R L+FMGPTFYQRL HM+EDKVKFR
Sbjct: 1021 FSTLSVDDITDQLHRAGFSRWGNERVYNGRTGEMVRQLIFMGPTFYQRLIHMSEDKVKFR 1080

Query: 658  NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFKLSDCSQIHICRKC 479
            NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANLHERLF LSD S +++C+KC
Sbjct: 1081 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSLMNVCQKC 1140

Query: 478  KNMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASVPYGAKLLAQELFSMNISLKFETEV 299
            +N ANVI+R + GGRKIRGP+CR+CDSA+ IV+ +VPYGAKLL QELFSM ISLKFET +
Sbjct: 1141 QNAANVIERKLTGGRKIRGPYCRVCDSADDIVRVNVPYGAKLLCQELFSMGISLKFETRL 1200

Query: 298  C 296
            C
Sbjct: 1201 C 1201


>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
          Length = 1196

 Score = 1609 bits (4167), Expect = 0.0
 Identities = 792/1162 (68%), Positives = 928/1162 (79%), Gaps = 3/1162 (0%)
 Frame = -2

Query: 3772 ELGEDXXXXXXXXXXXXXFEQYGLISHQINSYNDFIKYGLQKVFDSVGEISIEPGYDPSK 3593
            ELGE              F +YGLISHQINSYNDFI+ G+QKVFDS G++ +EPGYDPSK
Sbjct: 42   ELGEVFLQNFCKEASTSFFSEYGLISHQINSYNDFIRNGVQKVFDSFGDLIVEPGYDPSK 101

Query: 3592 RGDGDWKYASIKFGKVNVERPKFWSGEKFSAEGGEEFLNLLPRHARLQNMTYSGRMIVET 3413
            +   +W+YA ++FGKV ++ P FW G    A+  +E+ NLLPRHARLQNMTYS RM V  
Sbjct: 102  KRQNEWRYALVRFGKVTLDLPSFWGG----ADKDKEY-NLLPRHARLQNMTYSSRMKVNV 156

Query: 3412 HVQVYTKKLVRSDKFKTGTEQYVDKELEKEDKRDIVIGRIPVMVKSELCWMSQAEKHDCD 3233
            H++VYT+KLVRSDKFKTG EQ++DKE+   + +D++IGRIPVMVKS+LCWM  AEK DC 
Sbjct: 157  HIEVYTQKLVRSDKFKTGKEQFLDKEIISTEDKDVMIGRIPVMVKSDLCWMKDAEKGDCY 216

Query: 3232 FDHGGYFIVKGAEKTFIAQEQICLRRLWLSSSPTWMAAYRPAAKRKRVYLKLVDTPRFEN 3053
            FDHGGYFI+KGAEKTFIAQEQIC +RLW++S      AY+   KR R+ L+L  +   E+
Sbjct: 217  FDHGGYFIIKGAEKTFIAQEQICRKRLWITSHQNLTVAYQSEVKRNRLILRLAQSG-LED 275

Query: 3052 MGGGEKTLSVYFVVTEMPVWILFFALGASSDKEVVNLIDLDIQDTKIVNTLIASIYDADK 2873
                +  L VYF+ TE+PVWILFFALG SSDKEVV+LID    D  I+N L  SI  +D+
Sbjct: 276  TTVEKDVLCVYFLSTEIPVWILFFALGVSSDKEVVDLIDFPTDDASILNILFPSIQISDE 335

Query: 2872 KCDGFRKGKNALNHIEKLLKNCKFPPTESVEECIKNFLFPSLQGFKQKARFLGYMVKCLL 2693
             C GFR+ K AL  +EK +K  +FPP ES EEC+  FLFP+L+G  QKARFLGYMVKCLL
Sbjct: 336  VCAGFRRQKKALGFVEKHIKKTQFPPRESAEECLDMFLFPNLRGMLQKARFLGYMVKCLL 395

Query: 2692 EAYTGRRKMDNRDDFRNKXXXXXXXXXXXXLKVHLKHAERRMVKAMQRDLYGDRELQQIE 2513
            +A+TGRRK +N+DDFRNK            L+  + HA +R  KA+QRDLYGD+ L+QIE
Sbjct: 396  QAFTGRRKCNNKDDFRNKRLDLAGELLERELRAQVSHARKRTAKALQRDLYGDKGLRQIE 455

Query: 2512 HYLDASIVTNGLSRAFSTGAWSHPYKRMERVSGVVATLRQTNPLQMTADMRKTRQQVSYT 2333
             YLDASIVTNGLSRAFSTGAW HP+K+ ER+SGVVA + +TNPLQ   DMRKTRQQV YT
Sbjct: 456  FYLDASIVTNGLSRAFSTGAWCHPFKKTERISGVVANVGRTNPLQTVVDMRKTRQQVQYT 515

Query: 2332 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASLGLVSTTNLEPLLDKLFDCGMNEL 2153
            G+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA+ GLVS    E L+  L D GM  L
Sbjct: 516  GKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAATGLVSINIAESLISTLCDSGMENL 575

Query: 2152 VDDTSSLLLGEHKIFLDGEWVGTCEDSQSFVEQLRNMRRSNEVPHQVEIKMDRQHREVRI 1973
             +DT + L  +HK+FL+G+W+G C DS +FV +LR  RR NE+PHQVEIK D QH EVRI
Sbjct: 576  ANDTYTPLHEKHKVFLNGDWIGVCADSLAFVTELRRKRRRNELPHQVEIKRDEQHGEVRI 635

Query: 1972 FSDAGRILRPLLVVENLRKIRFLKGGDLSFQTLLDRXXXXXXXXXXXEDCVTAWGIGYLF 1793
            FSD+GRILRPLLVVENL +I+  K G  +F +LLD+           EDC TAWGI YLF
Sbjct: 636  FSDSGRILRPLLVVENLNRIKPSKEGKYTFHSLLDKGIIELIGAEEEEDCRTAWGIKYLF 695

Query: 1792 NADKENPQRRYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPS 1613
              D   P   YTHCELDMSFLL +SCGIIP+ANHDHARRVLYQ++KHSQQAIGF TTNP 
Sbjct: 696  MEDGGKPV-NYTHCELDMSFLLSVSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPD 754

Query: 1612 IRTDTNIHQLYYPQRPLFRTILSECLGKSTYT-RHKGMLPRPEYYNGQCAIVAVNVHLGY 1436
            IR DT  HQL+YPQRPLF+T+ S+CLGK  Y     G +P+ E +NGQ AIVAVNVHLGY
Sbjct: 755  IRVDTLSHQLHYPQRPLFQTMTSDCLGKRGYAPSQNGFIPKFECFNGQNAIVAVNVHLGY 814

Query: 1435 NQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEGSGKKSKPEDSINFGKMQSKIGRVDS 1256
            NQEDS+VMNRASLERGMFRSEHIRSYKA+VDNKE + K+ KP+D  NF K+ SK GRVDS
Sbjct: 815  NQEDSIVMNRASLERGMFRSEHIRSYKADVDNKESTDKRRKPDDCFNFAKIPSKNGRVDS 874

Query: 1255 LDDDGFPYIGANLQTGDIVIGKYAESGTDYSVKLKHTERGMVQKVILSANDDGKNFAVVS 1076
            LDDDGFP+IGANLQ+GDIVIG+ AESG D+S+KLKHTE+GMVQKV+LS+NDDGKNFAVVS
Sbjct: 875  LDDDGFPFIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVS 934

Query: 1075 LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTPGQLL 896
            LRQVR P LGDKFSSMHGQKGVLG+LESQENFPFT +GIVPDIVINPHAFPSRQTPGQLL
Sbjct: 935  LRQVRQPILGDKFSSMHGQKGVLGYLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 994

Query: 895  EAALGKGIAV--GGVLKHATPFSALSVDAITQQLKSCGFSRWGDERVYNGRTGEMIRSLV 722
            EAALGKGIA+  G  L+HATPFS  SVDAIT+QL   GFSRWG+ERVYNGRTGEM+RSL+
Sbjct: 995  EAALGKGIALAKGIPLRHATPFSTPSVDAITEQLHKAGFSRWGNERVYNGRTGEMVRSLI 1054

Query: 721  FMGPTFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 542
            FMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHGA+A
Sbjct: 1055 FMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGASA 1114

Query: 541  NLHERLFKLSDCSQIHICRKCKNMANVIQRPVLGGRKIRGPFCRICDSAEHIVKASVPYG 362
            NLHERLF LSD SQ+HIC +C N+AN+IQR ++GGRK+RGP+CRIC SA+ IV+ +VPYG
Sbjct: 1115 NLHERLFTLSDSSQMHICHRCHNVANIIQRSLMGGRKVRGPYCRICKSADDIVRVNVPYG 1174

Query: 361  AKLLAQELFSMNISLKFETEVC 296
            AKLL QELF+M I+LKFET +C
Sbjct: 1175 AKLLCQELFTMGINLKFETRIC 1196