BLASTX nr result

ID: Rauwolfia21_contig00006415 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00006415
         (678 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN75959.1| hypothetical protein VITISV_003125 [Vitis vinifera]    59   1e-06
gb|AAP53789.1| retrotransposon protein, putative, unclassified [...    57   7e-06
ref|NP_001057680.2| Os06g0493000 [Oryza sativa Japonica Group] g...    56   9e-06
gb|EEE65753.1| hypothetical protein OsJ_21419 [Oryza sativa Japo...    56   9e-06

>emb|CAN75959.1| hypothetical protein VITISV_003125 [Vitis vinifera]
          Length = 462

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
 Frame = -3

Query: 235 QRKVGDDKLVQLNLPEMNSEGQLMVEPVAILDRRLVKKHNK----PAVQWCNLAIEDVTW 68
           ++K+GD  ++    P +++EG L++EP AILD R VK+  K      V+W  LA+ED TW
Sbjct: 355 RKKLGDGSVISSEFPPLSNEGTLVIEPEAILDTRWVKRRAKFSEESLVKWRMLAVEDATW 414

Query: 67  EFANVFLKKWPGF 29
           E     L+++P +
Sbjct: 415 ESTXELLQQFPNW 427


>gb|AAP53789.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1611

 Score = 56.6 bits (135), Expect = 7e-06
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
 Frame = -3

Query: 250  VFRTGQRK--VGDDKLVQLNLPEMNSEGQLMVEPVAILDRRLVKKHNKPAVQWC----NL 89
            VF   Q K  +G   +   NLP +  +GQ+  EP A+L RR++ +HN+P  QW     NL
Sbjct: 1530 VFHVSQLKKHLGARAIPMPNLPAIGPDGQIKTEPAAVLQRRMIPRHNEPVTQWLILWENL 1589

Query: 88   AIEDVTWEFANVFLKKWPGF 29
               + TWE A+     +P F
Sbjct: 1590 TPAEATWEDASYIQAAFPNF 1609


>ref|NP_001057680.2| Os06g0493000 [Oryza sativa Japonica Group]
            gi|255677065|dbj|BAF19594.2| Os06g0493000 [Oryza sativa
            Japonica Group]
          Length = 866

 Score = 56.2 bits (134), Expect = 9e-06
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
 Frame = -3

Query: 250  VFRTGQRK--VGDDKLVQLNLPEMNSEGQLMVEPVAILDRRLVKKHNKPAVQ----WCNL 89
            VF   Q K  +G   + +  LP +++EG+++  P+A+LDRRL+ ++N+P VQ    W NL
Sbjct: 785  VFHVSQLKKHLGSRAVPEQGLPLIDAEGRILSTPLAVLDRRLIPRNNEPVVQWKIHWANL 844

Query: 88   AIEDVTWEFANVFLKKWPGF 29
                 TWE A    K +P F
Sbjct: 845  PESAATWEDAAFITKVFPSF 864


>gb|EEE65753.1| hypothetical protein OsJ_21419 [Oryza sativa Japonica Group]
          Length = 645

 Score = 56.2 bits (134), Expect = 9e-06
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
 Frame = -3

Query: 250 VFRTGQRK--VGDDKLVQLNLPEMNSEGQLMVEPVAILDRRLVKKHNKPAVQ----WCNL 89
           VF   Q K  +G   + +  LP +++EG+++  P+A+LDRRL+ ++N+P VQ    W NL
Sbjct: 564 VFHVSQLKKHLGSRAVPEQGLPLIDAEGRILSTPLAVLDRRLIPRNNEPVVQWKIHWANL 623

Query: 88  AIEDVTWEFANVFLKKWPGF 29
                TWE A    K +P F
Sbjct: 624 PESAATWEDAAFITKVFPSF 643


Top