BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00005782
         (1463 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   706   0.0  
gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tu...   701   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   698   0.0  
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   696   0.0  
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...   694   0.0  
gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum de...   694   0.0  
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       694   0.0  
gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tu...   693   0.0  
gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum de...   693   0.0  
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...   693   0.0  
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   691   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   691   0.0  
gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum de...   691   0.0  
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   690   0.0  
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola...   690   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   690   0.0  
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   687   0.0  
gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tu...   687   0.0  
gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solan...   687   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   682   0.0  

>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  706 bits (1823), Expect = 0.0
 Identities = 352/487 (72%), Positives = 409/487 (83%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            Y+PVRWLTEQ+ + +  +++PKSP+I+LD GLVYVRRV VTPCKVYFCGPEVNVSNRVLR
Sbjct: 324  YDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 383

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDIDNFLRVSF+DEEW K++ST+LLPR+S+GN +RT+IY R+LS L+ G VIGDKKF
Sbjct: 384  NYSEDIDNFLRVSFVDEEWEKIHSTDLLPRASTGNGVRTDIYLRILSTLRNGFVIGDKKF 443

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            +FLA S SQLR+NS WMFASRPGL A DIR WMG F  IRNVAKYAARLGQSF SS ETL
Sbjct: 444  EFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETL 503

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
            SV R E+E+IPD+                   S+  T YIFSDGIGKISA FARRVA+KC
Sbjct: 504  SVGRHEVEVIPDVV-----------------CSLHGTNYIFSDGIGKISADFARRVAVKC 546

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            GL+ +TPS FQIRYGG+KGVVA+DP SS KLSLRNSM+KY+S+NI LDVL WSKYQPC+L
Sbjct: 547  GLQ-YTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYL 605

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+L+TLLSTLGVKD VFE+KQ +A+ +LD IL D L+A EALELMS GEN NILKEMLN
Sbjct: 606  NRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLN 665

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGY PD+EPFLSMMLQTFRASKLLDLR ++RIFIPNGR MMGCLDE++TLEYG+VFVQ++
Sbjct: 666  CGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFT 725

Query: 1261 GAGRRQFYEDSQLFYENNSDH-TFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            G GRRQFYE+S  F ++ S +  FILE  VVVAKNPCLHPGDIRVL+AV+VPAL HMVDC
Sbjct: 726  GTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 785

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 786  VVFPQKG 792


>gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
          Length = 1050

 Score =  701 bits (1809), Expect = 0.0
 Identities = 354/487 (72%), Positives = 404/487 (82%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            Y+PVRWLTEQ+   +  ++ PKSP+I+LD GLVYVRRV VTPCKVYFCGPEVNVSNRVLR
Sbjct: 171  YDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 230

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDIDNFLRVSF+DEEW K+YSTELLP++S+GN IRT IY+R+LS L++G VIGDKKF
Sbjct: 231  NYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKF 290

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            +FLA S SQLR+NS WMFASRPGL A DIR WMGDFS I+NVAKYAARLGQSF SSTETL
Sbjct: 291  EFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETL 350

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
            SV R EIE+IPD++                   V  T Y+FSDGIGKISA FARRVA KC
Sbjct: 351  SVLRHEIEVIPDVK-------------------VHGTSYVFSDGIGKISADFARRVASKC 391

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            GL ++TPSAFQIRYGG+KGVVA+DP SS KLSLR SM KY+SDN  LDVL WSKYQPCFL
Sbjct: 392  GL-QYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCFL 450

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+LITLLSTLGVKD + E+KQ++A+ +LD IL D L+A EALELMS GEN NILK MLN
Sbjct: 451  NRQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 510

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGY PD+EPFLSMMLQTFRASKLLDLR K+RIFIPNGR MMGCLDE++TLEYG+VFVQ++
Sbjct: 511  CGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 570

Query: 1261 GAGRRQFYEDSQLFYENNSDH-TFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            GAG R+F ED   F  + S +  FIL+  VVVAKNPCLHPGDIRVL+AVNVPAL HMVDC
Sbjct: 571  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVNVPALHHMVDC 630

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 631  VVFPQKG 637


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  698 bits (1801), Expect = 0.0
 Identities = 360/487 (73%), Positives = 404/487 (82%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            YEPVRWL EQ++  I+ Q V  SPAISLD GLVYVRRVQ+TPCKVYFCGPEVNVSNRVLR
Sbjct: 323  YEPVRWLHEQYRTYISKQ-VAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLR 381

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDIDNFLRVSF+DE   K++ST + PR S+    RT +Y+R+LS+L+ GIVIGDKKF
Sbjct: 382  NYPEDIDNFLRVSFLDENSEKIHSTVISPRMSNEGR-RTGVYRRILSILQNGIVIGDKKF 440

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            DFLA S SQLR+NSAWMFASRPGL AADIR+ MGDFS IRNVAKYAARLGQSFSSS ETL
Sbjct: 441  DFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETL 500

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
             V + EIE+IPDIE           DGT          Y+FSDGIGKISA+ A RVAIKC
Sbjct: 501  KVAKHEIEIIPDIETHR--------DGTT---------YVFSDGIGKISAELAHRVAIKC 543

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            G K  TPSAFQIRYGG+KGVVA+DPTSSRKLSLR SM KY+S+N  LDVL+WSKY+PCFL
Sbjct: 544  GCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFL 603

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+LITLLSTLGVKDHVFEKKQR+A+ +LD IL DPLRA EALELMS GEN NILKEML 
Sbjct: 604  NRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLM 663

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGYKPD+EPFLSMMLQTFRA+KLL+LR KTRIF+PNGR MMGCLDET+TLEYGEVFVQ S
Sbjct: 664  CGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQIS 723

Query: 1261 GAGRRQFYEDSQLFYENNSDH-TFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            G G RQ + DS +FY + S H  FILE +VVVAKNPCLHPGD+R+L AV+VPAL HMVDC
Sbjct: 724  GTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDC 783

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 784  VVFPQKG 790


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score =  696 bits (1797), Expect = 0.0
 Identities = 351/487 (72%), Positives = 404/487 (82%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            Y+PVRWLTEQ+   +  ++ PKSP+I+LD GLVYVRRV VTPCKVYFCGPEVNVSNRVLR
Sbjct: 323  YDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 382

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDIDNFLRVSF+DEEW K+YST+LLP++S+GN IRT IY+R+LS L++G VIGDKKF
Sbjct: 383  NYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIRTNIYERILSTLRKGFVIGDKKF 442

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            +FLA S SQLR+NS WMFASRPGL A DIR WMGDFS I+NVAKYAARLGQSF SSTETL
Sbjct: 443  EFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETL 502

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
            SV R EIE+IPD++                   V  T Y+FSDGIGKISA FARRVA KC
Sbjct: 503  SVLRHEIEVIPDVK-------------------VHGTSYVFSDGIGKISADFARRVASKC 543

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            GL + TPSAFQIRYGG+KGVVA+DP SS KLSLR SM KY+SDN  LDVL WSKYQPC+L
Sbjct: 544  GL-QHTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYL 602

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+L+TLLSTLGVKD V E+KQ++A+ +LD IL D L+A EALELMS GEN NILK MLN
Sbjct: 603  NRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 662

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGY PD+EPFLSMMLQTFRASKLLDLR K+RIFIPNGRLMMGCLDE++TLEYG+VFVQ++
Sbjct: 663  CGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTLEYGQVFVQFT 722

Query: 1261 GAGRRQFYEDSQLFYENNSDH-TFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            G+G R+F ED   F  + S +  FIL+  VVVAKNPCLHPGDIRVL+AV+VPAL HMVDC
Sbjct: 723  GSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 782

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 783  VVFPQKG 789


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score =  694 bits (1792), Expect = 0.0
 Identities = 350/487 (71%), Positives = 403/487 (82%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            Y+PVRWLTEQ+   +  ++ PKSP+I+LD GLVYVRRV VTPCKVYFCGPEVNVSNRVLR
Sbjct: 322  YDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 381

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDIDNFLRVSF+DEEW K+YSTELLP++S+GN IRT IY+R+LS +++G VIGDKKF
Sbjct: 382  NYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYERILSTMQKGFVIGDKKF 441

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            +FLA S SQLR+NS WMFASRPGL A DIR WMGDFS I+NVAKYAARLGQSF SS ETL
Sbjct: 442  EFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETL 501

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
            SV R EIE+IPD++                   V  T Y+FSDGIGKISA FARRVA KC
Sbjct: 502  SVLRHEIEVIPDVK-------------------VHGTSYVFSDGIGKISADFARRVASKC 542

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            GL ++TPSAFQIRYGG+KGVVA+DP SS KLSLR SM KY+SDN  LDVL WSKYQPC+L
Sbjct: 543  GL-QYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYL 601

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+LITLLSTLGVKD + E+KQ++A+ +LD IL D L+A EALELMS GEN NILK MLN
Sbjct: 602  NRQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 661

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGY PD+EPFLSMMLQTFRASKLLDLR K+RIFIPNGR MMGCLDE++TLEYG+VFVQ++
Sbjct: 662  CGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 721

Query: 1261 GAGRRQFYEDSQLFYENNSDH-TFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            GAG R+F ED   F  + S +  FIL+  VVVAKNPCLHPGDIRVL+AV+VPAL HMVDC
Sbjct: 722  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 781

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 782  VVFPQKG 788


>gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1021

 Score =  694 bits (1792), Expect = 0.0
 Identities = 350/487 (71%), Positives = 403/487 (82%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            Y+PVRWLTEQ+   +  ++ PKSP+I+LD GLVYVRRV VTPCKVYFCGPEVNVSNRVLR
Sbjct: 171  YDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 230

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDIDNFLRVSF+DEEW K+YSTELLP++S+GN IRT IY+R+LS L++G VIGDKKF
Sbjct: 231  NYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKF 290

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            +FLA S SQLR+NS WMFASRPGL A DIR WMGDFS I+NVAKYAARLGQSF SS ETL
Sbjct: 291  EFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETL 350

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
            SV R EIE+IPD++                   V  T Y+FSDGIGKISA FARRVA KC
Sbjct: 351  SVLRHEIEVIPDVK-------------------VHGTSYVFSDGIGKISADFARRVASKC 391

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            GL ++TPSAFQIRYGG+KGVVA+DP SS KL+LR SM KY+SDN  LDVL WSKYQPCFL
Sbjct: 392  GL-QYTPSAFQIRYGGYKGVVAVDPYSSMKLTLRKSMSKYESDNNKLDVLGWSKYQPCFL 450

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+LITLLSTLGV+D + E+KQ++A+ +LD IL D L+A EALELMS GEN NILK MLN
Sbjct: 451  NRQLITLLSTLGVRDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 510

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGY PD+EPFLSMMLQTFRASKLLDLR K+RIFIPNGR MMGCLDE++TLEYG+VFVQ++
Sbjct: 511  CGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 570

Query: 1261 GAGRRQFYEDSQLFYENNSDH-TFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            GAG R+F ED   F  + S +  FIL+  VVVAKNPCLHPGDIRVL+AV+VPAL HMVDC
Sbjct: 571  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 630

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 631  VVFPQKG 637


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  694 bits (1792), Expect = 0.0
 Identities = 347/487 (71%), Positives = 406/487 (83%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            Y+PVRWLTEQ+ + +  +++PKSP I+LD GLVYVRRV VTPCKVYFCGPEVNVSNRVLR
Sbjct: 323  YDPVRWLTEQYDEYLKGRQLPKSPPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLR 382

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDI+NFLRVSF+DEEW K++ST+LLPR+S+GN  RT+IY+R+LS L+ G +IGDK+F
Sbjct: 383  NYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTGNGTRTDIYERILSTLRNGFIIGDKRF 442

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            +FLA S SQLR+NS WMFASRPGL A DIR WMGDF  IRNVAKYAARLGQSF SS ETL
Sbjct: 443  EFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETL 502

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
            SV R E+E+IPD+                   S+  T YIFSDGIGKISA FA RV IKC
Sbjct: 503  SVGRHEVEVIPDVA-----------------CSLHGTNYIFSDGIGKISADFAHRVTIKC 545

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            GL+ +TPS+FQIRYGG+KGVVA+DP SS KLSLR SM+KY+S+NI LDVL WSKYQPC+L
Sbjct: 546  GLQ-YTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLGWSKYQPCYL 604

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+L+TLLSTLGV D V E+KQ +A+ +LD IL D L+A EALELMS GEN NILKEMLN
Sbjct: 605  NRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLN 664

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGY PD+EPFLSMMLQTFRASKLLDLR +TRIFIPNGR MMGCLDE++TLEYG+VFVQ+S
Sbjct: 665  CGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQFS 724

Query: 1261 GAGRRQFYEDSQLFYENNSDH-TFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            GAGRRQF+E+S  F ++ S +  FIL+  VVVAKNPCLHPGDIRVL+AV+VPAL HMVDC
Sbjct: 725  GAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 784

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 785  VVFPQKG 791


>gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 841

 Score =  693 bits (1789), Expect = 0.0
 Identities = 349/487 (71%), Positives = 403/487 (82%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            Y+PVRWLTEQ+   +  ++ PKSP+I+LD GLVYVRRV VTPCKVYFCGPEVNVSNRVLR
Sbjct: 323  YDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 382

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDIDNFLRVSF+DEEW K+YST+LLP++S+GN IRT IY+R+LS L++G VIGDKKF
Sbjct: 383  NYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIRTNIYERILSTLRKGFVIGDKKF 442

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            +FLA S SQLR+NS WMFASRPGL A DIR WMGDFS I+NVAKYAARLGQSF SS ETL
Sbjct: 443  EFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETL 502

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
            SV R EIE+IPD++                   V  T Y+FSDGIGKISA FARRVA KC
Sbjct: 503  SVLRHEIEVIPDVK-------------------VHGTSYVFSDGIGKISADFARRVASKC 543

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            GL ++TPSAFQIRYGG+KGVVA+DP SS KLSLR SM KY+SDN  LDVL WSKYQPC+L
Sbjct: 544  GL-QYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYL 602

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+L+TLLSTLGVKD V E+KQ++A+ +LD IL D L+A EALELMS GEN NILK MLN
Sbjct: 603  NRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 662

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGY PD+EPFLSMMLQTFRASKLLDLR ++RIFIPNGR MMGCLDE++TLEYG+VFVQ++
Sbjct: 663  CGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 722

Query: 1261 GAGRRQFYEDSQLFYENNSDH-TFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            GAG R+F ED   F  + S +  FIL+  VVVAKNPCLHPGDIRVL+AV+VPAL HMVDC
Sbjct: 723  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 782

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 783  VVFPQKG 789


>gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1180

 Score =  693 bits (1789), Expect = 0.0
 Identities = 349/487 (71%), Positives = 403/487 (82%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            Y+PVRWLTEQ+   +  ++ PKSP+I+LD GLVYVRRV VTPCKVYFCGPEVNVSNRVLR
Sbjct: 289  YDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 348

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDIDNFLRVSF+DEEW K+YST+LLP++S+GN IRT IY+R+LS L++G VIGDKKF
Sbjct: 349  NYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIRTNIYERILSTLRKGFVIGDKKF 408

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            +FLA S SQLR+NS WMFASRPGL A DIR WMGDFS I+NVAKYAARLGQSF SS ETL
Sbjct: 409  EFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETL 468

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
            SV R EIE+IPD++                   V  T Y+FSDGIGKISA FARRVA KC
Sbjct: 469  SVLRHEIEVIPDVK-------------------VHGTSYVFSDGIGKISADFARRVASKC 509

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            GL ++TPSAFQIRYGG+KGVVA+DP SS KLSLR SM KY+SDN  LDVL WSKYQPC+L
Sbjct: 510  GL-QYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYL 568

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+L+TLLSTLGVKD V E+KQ++A+ +LD IL D L+A EALELMS GEN NILK MLN
Sbjct: 569  NRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 628

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGY PD+EPFLSMMLQTFRASKLLDLR ++RIFIPNGR MMGCLDE++TLEYG+VFVQ++
Sbjct: 629  CGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 688

Query: 1261 GAGRRQFYEDSQLFYENNSDH-TFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            GAG R+F ED   F  + S +  FIL+  VVVAKNPCLHPGDIRVL+AV+VPAL HMVDC
Sbjct: 689  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 748

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 749  VVFPQKG 755


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  693 bits (1789), Expect = 0.0
 Identities = 351/487 (72%), Positives = 402/487 (82%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            Y+PVRWLTEQ+   +  ++ PKSP+I+LD GLVYVRRV VTPCKVYFCGPEVNVSNRVLR
Sbjct: 171  YDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 230

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDIDNFLRVSF+DEEW K+YSTELLP++S+GN IRT IY+R+LS L++G VIGDKK 
Sbjct: 231  NYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKI 290

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            +FLA S SQLR+NS WMFASRPGL A DIR WMGDFS I+NVAKYAARLGQSF SS ETL
Sbjct: 291  EFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETL 350

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
            SV R EIE+IPD++                   V  T Y+FSDGIGKISA FARRVA KC
Sbjct: 351  SVLRHEIEVIPDVK-------------------VHGTSYVFSDGIGKISADFARRVASKC 391

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            GL ++TPSAFQIRYGG+KGVVA+DP SS KLSLR SM KY+SDN  LDVL WSKYQPC+L
Sbjct: 392  GL-QYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYL 450

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+LITLLSTLGVKD V E+KQ++A+ +LD IL D L+A EALELMS GEN NILK MLN
Sbjct: 451  NRQLITLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 510

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGY PD+EPFLSMMLQTFRASKLLDLR K+RIFIPNGR MMGCLDE++TLEYG+VFVQ++
Sbjct: 511  CGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 570

Query: 1261 GAGRRQFYEDSQLFYENNSDH-TFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            GAG R+F ED   F  + S +  FIL+  VVVAKNPCLHPGDIRVL+AV+VPAL HMVDC
Sbjct: 571  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 630

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 631  VVFPQKG 637


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  691 bits (1784), Expect = 0.0
 Identities = 349/487 (71%), Positives = 402/487 (82%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            Y+PVRWLTEQ+   +  ++ PKSP+I+LD GLVYVRRV VTPCKVYFCGPEVNVSNRVLR
Sbjct: 323  YDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 382

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDIDNFLRVSF+DEEW K+YST+LLP++S+GN IRT IY R+LS L++G VIGDKKF
Sbjct: 383  NYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIRTNIYVRILSTLQKGFVIGDKKF 442

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            +FLA S SQLR+NS WMFASRPGL A DIR WMGDFS I+NVAKYAARLGQSF SS ETL
Sbjct: 443  EFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETL 502

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
            SV R EIE+IPD++                   V  T Y+FSDGIGKISA FARRVA KC
Sbjct: 503  SVLRHEIEIIPDVK-------------------VHGTSYVFSDGIGKISADFARRVASKC 543

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            GL ++TPSAFQIRYGG+KGVVA+DP SS KLSLR SM KY+SDN  LDVL WSKYQPCFL
Sbjct: 544  GL-QYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCFL 602

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+L+TLLSTLGVKD V E+KQ++A+ +LD IL D L+A EALELMS GEN NILK MLN
Sbjct: 603  NRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 662

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGY PD+EPFLSMMLQTFRASKLLDLR ++RIFIPNGR MMGCLDE++TLEYG+VFVQ++
Sbjct: 663  CGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 722

Query: 1261 GAGRRQFYEDSQLFYENNSDH-TFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            G+G R+F ED   F  + S +  FIL+  VVVAKNPCLHPGDIRVL+AV+VPAL HMVDC
Sbjct: 723  GSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 782

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 783  VVFPQKG 789


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  691 bits (1783), Expect = 0.0
 Identities = 355/487 (72%), Positives = 397/487 (81%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            YEPVRWL+EQ++  +  + V  SPAISLD GLVYVRRVQ+TPCKVYFCGPEVNVSNRVLR
Sbjct: 325  YEPVRWLSEQYRTYVK-KPVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLR 383

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDIDNFLRVSF+DE   K++ST + PR S     RT +Y+R+LS+L+ GIVIGDKKF
Sbjct: 384  NYPEDIDNFLRVSFLDENLEKIHSTVISPRMSKEGR-RTGVYRRILSILQNGIVIGDKKF 442

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            DFLA S SQLR+NSAWMFASRPGL AA+IR+WMGDFS IRNVAKYAARLGQSFSSS ETL
Sbjct: 443  DFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETL 502

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
             V +DEIE IPDIE                 I    T Y+FSDGIGKIS + A RVAIKC
Sbjct: 503  KVAKDEIENIPDIE-----------------IHKGRTTYVFSDGIGKISPQLAHRVAIKC 545

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            G K  TPSAFQIRYGG+KGVVA+DPTSSRKLSLR SM KY+SDN  LDVLAWSKYQP FL
Sbjct: 546  GCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFL 605

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+LITLLSTLGVKDHVFEKKQR A+ +LD IL DP+ A EALELMS GEN N+LKEML 
Sbjct: 606  NRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLM 665

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGYKPD+EPFLSMMLQTFRA+KLL+LR KTRIF+PNGR MMGCLDET+TLEYGEVFVQ S
Sbjct: 666  CGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQIS 725

Query: 1261 GAGRRQFYEDSQLFYENNSDH-TFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            G G RQ + DS +F  + S H  FILE ++VVAKNPCLHPGD+RVL AVNVP L HMVDC
Sbjct: 726  GTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDC 785

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 786  VVFPQKG 792


>gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1139

 Score =  691 bits (1783), Expect = 0.0
 Identities = 348/487 (71%), Positives = 402/487 (82%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            Y+PVRWLTEQ+   +  ++ PKSP+I+LD GLVYVRRV VTPCKVYFCGPEVNVSNRVLR
Sbjct: 315  YDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 374

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDIDNFLRVSF+DEEW K+YST+LLP++S+GN IRT IY+R+LS L++G VIGDKKF
Sbjct: 375  NYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIRTNIYERILSTLRKGFVIGDKKF 434

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            +FLA S SQLR+NS WMFASRPGL A DIR WMGDFS I+NVAKYAARLGQSF SS ETL
Sbjct: 435  EFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETL 494

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
            SV R EIE+IPD++                   V  T Y+FSDGIGKISA FARRVA KC
Sbjct: 495  SVLRHEIEVIPDVK-------------------VHGTSYVFSDGIGKISADFARRVASKC 535

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            GL ++TPSAFQIRYGG+KGVVA+DP SS KLSLR SM KY+SDN  LDVL WSKYQPC+L
Sbjct: 536  GL-QYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYL 594

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+L+TLLSTLGVKD V E+KQ++A+ +LD IL D L+A EALELMS GEN  ILK MLN
Sbjct: 595  NRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTTILKAMLN 654

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGY PD+EPFLSMMLQTFRASKLLDLR ++RIFIPNGR MMGCLDE++TLEYG+VFVQ++
Sbjct: 655  CGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 714

Query: 1261 GAGRRQFYEDSQLFYENNSDH-TFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            GAG R+F ED   F  + S +  FIL+  VVVAKNPCLHPGDIRVL+AV+VPAL HMVDC
Sbjct: 715  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 774

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 775  VVFPQKG 781


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  690 bits (1780), Expect = 0.0
 Identities = 348/487 (71%), Positives = 402/487 (82%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            Y+PVRWLTEQ+   +  ++ PKSP+I+LD GLVYVRRV VTPCKVYFCGPEVNVSNRVLR
Sbjct: 323  YDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 382

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDIDNFLRVSF+DEEW K+YSTELLP++S+GN IRT IY+R+LS L++G VIGDKKF
Sbjct: 383  NYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKF 442

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            +FLA S SQLR+NS WMFASR GL   DIR+WMGDFS I+NVAKYAARLGQSF SS ETL
Sbjct: 443  EFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETL 502

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
            SV R EIE+IPD++                   V  T Y+FSDGIGKISA FARRVA KC
Sbjct: 503  SVLRHEIEVIPDVK-------------------VHGTSYVFSDGIGKISADFARRVASKC 543

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            GL+ +TPSAFQIRYGG+KGVVA+DP SS KLSLR SM KY+SDN  LDVL WSKYQPC+L
Sbjct: 544  GLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYL 602

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+L+TLLSTLGVKD V E+KQ++A+ +LD IL D L+A EALELMS GEN NILK MLN
Sbjct: 603  NRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLN 662

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGY PD+EPFLSMMLQTFRASKLLDLR ++RIFIPNGR MMGCLDE++TLEYG+VFVQ++
Sbjct: 663  CGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 722

Query: 1261 GAGRRQFYEDSQLFYENNSDH-TFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            GAG R+F ED   F  + S +  FIL+  VVVAKNPCLHPGDIRVL+AV+VPAL HMVDC
Sbjct: 723  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 782

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 783  VVFPQKG 789


>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  690 bits (1780), Expect = 0.0
 Identities = 348/487 (71%), Positives = 402/487 (82%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            Y+PVRWLTEQ+   +  ++ PKSP+I+LD GLVYVRRV VTPCKVYFCGPEVNVSNRVLR
Sbjct: 171  YDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 230

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDIDNFLRVSF+DEEW K+YSTELLP++S+GN IRT IY+R+LS L++G VIGDKKF
Sbjct: 231  NYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKF 290

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            +FLA S SQLR+NS WMFASR GL   DIR+WMGDFS I+NVAKYAARLGQSF SS ETL
Sbjct: 291  EFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETL 350

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
            SV R EIE+IPD++                   V  T Y+FSDGIGKISA FARRVA KC
Sbjct: 351  SVLRHEIEVIPDVK-------------------VHGTSYVFSDGIGKISADFARRVASKC 391

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            GL+ +TPSAFQIRYGG+KGVVA+DP SS KLSLR SM KY+SDN  LDVL WSKYQPC+L
Sbjct: 392  GLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYL 450

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+L+TLLSTLGVKD V E+KQ++A+ +LD IL D L+A EALELMS GEN NILK MLN
Sbjct: 451  NRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLN 510

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGY PD+EPFLSMMLQTFRASKLLDLR ++RIFIPNGR MMGCLDE++TLEYG+VFVQ++
Sbjct: 511  CGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 570

Query: 1261 GAGRRQFYEDSQLFYENNSDH-TFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            GAG R+F ED   F  + S +  FIL+  VVVAKNPCLHPGDIRVL+AV+VPAL HMVDC
Sbjct: 571  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 630

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 631  VVFPQKG 637


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  690 bits (1780), Expect = 0.0
 Identities = 347/487 (71%), Positives = 402/487 (82%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            Y+PVRWLTEQ+   +  ++ PKSP+I+LD GLVYVRRV VTPCKVYFCGPEVNVSNRVLR
Sbjct: 323  YDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 382

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDIDNFLRVSF+DEEW K+YST+LLP++S+G+ +RT IY+R+LS L++G VIGDKKF
Sbjct: 383  NYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGSGVRTNIYERILSTLRKGFVIGDKKF 442

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            +FLA S SQLR+NS WMFASRPGL A DIRAWMGDFS I+NVAKYAARLGQSF SS ETL
Sbjct: 443  EFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETL 502

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
            SV R EIE+IPD++                   V  T Y+FSDGIGKIS  FA RVA KC
Sbjct: 503  SVLRHEIEVIPDVK-------------------VHGTSYVFSDGIGKISGDFAHRVASKC 543

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            GL ++TPSAFQIRYGG+KGVV +DP SS KLSLR SM KY+SDNI LDVL WSKYQPC+L
Sbjct: 544  GL-QYTPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYL 602

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+LITLLSTLGVKD V E+KQ++A+ +LD IL D L+A EALELMS GEN NILK MLN
Sbjct: 603  NRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 662

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGYKPD+EPFLSMMLQTFRASKLLDLR ++RIFIPNGR MMGCLDE++TLEYG+VFVQ++
Sbjct: 663  CGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFT 722

Query: 1261 GAGRRQFYEDSQLFYENNSDHT-FILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            GAG  +F +D   F  + S ++ FIL+  VVVAKNPCLHPGDIRVLKAVNV AL HMVDC
Sbjct: 723  GAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDC 782

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 783  VVFPQKG 789


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  687 bits (1773), Expect = 0.0
 Identities = 346/487 (71%), Positives = 400/487 (82%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            YEP RWLT+Q++K +  +  P SPAISLD GLVYV RVQVTP +VYFCGPE+NVSNRVLR
Sbjct: 337  YEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 396

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEI-RTEIYQRVLSLLKEGIVIGDKK 357
            H+  DIDNFLR+SFIDE+  K++ST+L PR SS  +I RT IY R+LS L+ GI+IGD+K
Sbjct: 397  HFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 456

Query: 358  FDFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTET 537
            F+FLA S SQLRE+SAWMFASR GL AA+IR WMG+F  IRNVAKYAARLGQSFSSS ET
Sbjct: 457  FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 516

Query: 538  LSVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIK 717
            LSV  DEIE+IPD+                 KI +  TKY+FSDGIGK+SA+FAR+VA K
Sbjct: 517  LSVHMDEIEIIPDV-----------------KIEIGKTKYVFSDGIGKVSAEFARKVASK 559

Query: 718  CGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCF 897
            CGLK   PSAFQIRYGG+KGVVA DPTSS+KLSLR+SM KY+S+   LDVLAWSKYQPCF
Sbjct: 560  CGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCF 619

Query: 898  LNRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEML 1077
            LNR+LI+LLSTLG+ D +FEKKQR+A+ +LD ILTDPL+A EALELMS GEN NILKE+L
Sbjct: 620  LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL 679

Query: 1078 NCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQY 1257
             CGYKPD+EPFLSMMLQTFRASKLL+LR KTRIFIPNGR MMGCLDET+TL YG+VFVQ 
Sbjct: 680  ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 739

Query: 1258 SGAGRRQFYEDSQLFYENNSDHTFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            SGAG RQ + +S LF  + S   FI++  VVVAKNPCLHPGD+RVLKAVNVPAL HMVDC
Sbjct: 740  SGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDC 799

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 800  VVFPQKG 806


>gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 935

 Score =  687 bits (1772), Expect = 0.0
 Identities = 347/487 (71%), Positives = 400/487 (82%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            Y+PVRWLTEQ+      ++ PKSP+I+LD GLVYVRRV VTPCKVYFCGPEVNVSNRVLR
Sbjct: 323  YDPVRWLTEQYDGYFKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 382

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDIDNFLRVSF+DEEW K+YSTELLP++S+GN IRT IY+R+LS L++G VIGDKKF
Sbjct: 383  NYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKF 442

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            +FLA S SQLR+NS WMFASR GL A DIR+WMGDFS I+NVAKYAAR GQSF SS ETL
Sbjct: 443  EFLAFSSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETL 502

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
            SV R EIE+IPD++                   V  T Y+FSDGIGKISA FAR+VA  C
Sbjct: 503  SVLRHEIEVIPDVK-------------------VHGTSYVFSDGIGKISADFARKVASNC 543

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            GL+ +TPSAFQIRYGG+KGVVA+DP SS KLSLR SM KY+SDN  LDVL WSKYQPC+L
Sbjct: 544  GLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYL 602

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+L+TLLSTLGVKD V E+KQ++A+ +LD IL D L+A EALELMS GEN NILK MLN
Sbjct: 603  NRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 662

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGY PD+EPFLSMMLQTFRASKLLDLR K+RIFIPNGR MMGCLDE++TLEYG+VFVQ++
Sbjct: 663  CGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 722

Query: 1261 GAGRRQFYEDSQLFYENNSDH-TFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            GAG R+F ED   F  + S +  FIL+  VVVAKNPCLHPGDIRVL+AV+VPAL HMVDC
Sbjct: 723  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 782

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 783  VVFPQKG 789


>gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
          Length = 1137

 Score =  687 bits (1772), Expect = 0.0
 Identities = 347/487 (71%), Positives = 400/487 (82%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            Y+PVRWLTEQ+      ++ PKSP+I+LD GLVYVRRV VTPCKVYFCGPEVNVSNRVLR
Sbjct: 359  YDPVRWLTEQYDGYFKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 418

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIRTEIYQRVLSLLKEGIVIGDKKF 360
            +Y EDIDNFLRVSF+DEEW K+YSTELLP++S+GN IRT IY+R+LS L++G VIGDKKF
Sbjct: 419  NYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKF 478

Query: 361  DFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETL 540
            +FLA S SQLR+NS WMFASR GL A DIR+WMGDFS I+NVAKYAAR GQSF SS ETL
Sbjct: 479  EFLAFSSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETL 538

Query: 541  SVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIKC 720
            SV R EIE+IPD++                   V  T Y+FSDGIGKISA FAR+VA  C
Sbjct: 539  SVLRHEIEVIPDVK-------------------VHGTSYVFSDGIGKISADFARKVASNC 579

Query: 721  GLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCFL 900
            GL+ +TPSAFQIRYGG+KGVVA+DP SS KLSLR SM KY+SDN  LDVL WSKYQPC+L
Sbjct: 580  GLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYL 638

Query: 901  NRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEMLN 1080
            NR+L+TLLSTLGVKD V E+KQ++A+ +LD IL D L+A EALELMS GEN NILK MLN
Sbjct: 639  NRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLN 698

Query: 1081 CGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQYS 1260
            CGY PD+EPFLSMMLQTFRASKLLDLR K+RIFIPNGR MMGCLDE++TLEYG+VFVQ++
Sbjct: 699  CGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFT 758

Query: 1261 GAGRRQFYEDSQLFYENNSDH-TFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            GAG R+F ED   F  + S +  FIL+  VVVAKNPCLHPGDIRVL+AV+VPAL HMVDC
Sbjct: 759  GAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDC 818

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 819  VVFPQKG 825


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  682 bits (1761), Expect = 0.0
 Identities = 343/487 (70%), Positives = 398/487 (81%), Gaps = 1/487 (0%)
 Frame = +1

Query: 1    YEPVRWLTEQFKKDINLQKVPKSPAISLDKGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 180
            YEP +W  EQ+KK +     P+SP +SLD GLVYV +VQ+TPCKV+FCGPEVNVSNRVLR
Sbjct: 333  YEPSKWFNEQYKKYLTSGNPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLR 392

Query: 181  HYLEDIDNFLRVSFIDEEWGKMYSTELLPRSSSGNEIR-TEIYQRVLSLLKEGIVIGDKK 357
             Y EDIDNFLRVSF+DEE  K++ST++ PR+SS NE+R T IY R+LS L+ GIVIGDKK
Sbjct: 393  QYREDIDNFLRVSFVDEELEKIHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKK 452

Query: 358  FDFLACSPSQLRENSAWMFASRPGLNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTET 537
            F+FLA S SQLRENS WMFASR GL AADIRAWMG F  IRNVA+YAARLGQSF SSTET
Sbjct: 453  FEFLAFSSSQLRENSCWMFASRLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTET 512

Query: 538  LSVRRDEIEMIPDIERRELSAKYVFSDGTIRKISVPSTKYIFSDGIGKISAKFARRVAIK 717
            LSV   EIE+IPDIE                 +S   T+Y+FSDGIGKISA+FAR+VAIK
Sbjct: 513  LSVSSHEIEIIPDIE-----------------VSRGGTRYLFSDGIGKISAEFARKVAIK 555

Query: 718  CGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRNSMMKYDSDNITLDVLAWSKYQPCF 897
            CG K FTPSAFQIRY G+KGVVA+DPTSS+KLSLR SM KY+S+N  LDVLA SKYQPCF
Sbjct: 556  CGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESENTKLDVLAHSKYQPCF 615

Query: 898  LNRELITLLSTLGVKDHVFEKKQRKAIAELDEILTDPLRAHEALELMSAGENANILKEML 1077
            LNR+LITLLSTLGV DH FE+KQR+A+ +LD +LTDPLRA EALELMS GEN NILKEML
Sbjct: 616  LNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEML 675

Query: 1078 NCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRLMMGCLDETKTLEYGEVFVQY 1257
             CGY+PD+EPFLSMMLQTFRASKLL+LR KTRIFIPNGR MMGCLDET+TLE+G+VFV++
Sbjct: 676  LCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKF 735

Query: 1258 SGAGRRQFYEDSQLFYENNSDHTFILEKRVVVAKNPCLHPGDIRVLKAVNVPALQHMVDC 1437
            SG+  R  Y+ S +F E      ++++  VVVAKNPCLHPGD+R+LKAV+VPAL HMVDC
Sbjct: 736  SGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDC 795

Query: 1438 VVFPQRG 1458
            VVFPQ+G
Sbjct: 796  VVFPQKG 802