BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00004109
         (3792 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]      1570   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...  1563   0.0  
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1562   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...  1561   0.0  
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...  1555   0.0  
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1547   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1535   0.0  
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...  1505   0.0  
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1497   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1488   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...  1483   0.0  
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro...  1481   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1460   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1458   0.0  
gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solan...  1450   0.0  
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]      1415   0.0  
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...  1400   0.0  
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...  1394   0.0  
gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlise...  1389   0.0  
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...  1386   0.0  

>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score = 1570 bits (4066), Expect = 0.0
 Identities = 786/1109 (70%), Positives = 911/1109 (82%), Gaps = 19/1109 (1%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSKGGSRAYARVQFRDNRSAEV 3369
            MGKTIQVFGFP+L+ AEAV   LE +TGNG++YALEVKQSKGG RA+A+VQF +N+SAE 
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEF 60

Query: 3368 IISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKNA 3189
            II +AS + LYYG SYLKAWEM  D+V +PR +V  M+ + LNFGCQ+SD KF VL    
Sbjct: 61   IIDLAS-KGLYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGSK- 117

Query: 3188 NVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRIF 3009
            +VS+KFGIGLKKIYF+LS A  DYKL+L  ENIWQ+VLHRP  + A FLL+QLFGAPRI+
Sbjct: 118  DVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIY 177

Query: 3008 KKLEASMFSYFEETQDDQWVRTTDFTPSCIGQSSCICLEIPRGVQLPKFADYFAWYKENE 2829
            K+LE S +S+F+ET DDQWVRTTDFTPS IG SS +CLE   GVQLP F++ F +YKE+ 
Sbjct: 178  KRLEDSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFRNGVQLPNFSESFFYYKESM 237

Query: 2828 NPFVL--GTISSYSCSTVLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPKLDANFFWL 2655
            N F+L  G   S+S    LVPIV  P+G+ELPY ILFKI  L+Q+GC PG  L+ NFF L
Sbjct: 238  NQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQL 297

Query: 2654 VNPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSISLDEGLVYV 2475
            V+P+ R+I  IE+ALE LY LKECCY+PVRWLTEQ+ + +  +++PKSP I+LD+GLVYV
Sbjct: 298  VDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPPITLDDGLVYV 357

Query: 2474 RRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDLVPRSSSGD 2295
            RRV VTPCKVYFCGPEVNVSNRVLR+YSEDI+NFLRVSF+DEEWEK++STDL+PR+S+G+
Sbjct: 358  RRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTGN 417

Query: 2294 EKRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNAADIRAWMGD 2115
              RT IY RILS L+ G +IG+K+F+FLAFSSSQLR+NSVWMFASRPGL A DIR WMGD
Sbjct: 418  GTRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGD 477

Query: 2114 FSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSDGIGKISAEF 1935
            F  IRNVAKYAARLGQSF SS ETLSV R E+++IPD+        YIFSDGIGKISA+F
Sbjct: 478  FRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYIFSDGIGKISADF 537

Query: 1934 ARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSDNTKLDVLAW 1755
            A RV  KCGL+ +TPS+FQIRYGG+KGVVA+DP SS KLSLRKSM+KY+S+N KLDVL W
Sbjct: 538  AHRVTIKCGLQ-YTPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLGW 596

Query: 1754 SKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEALELMSPGENT 1575
            SKYQPC+LNRQL+TLLSTLGV D   E+KQ +AV +LD IL D L+AQEALELMSPGENT
Sbjct: 597  SKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGENT 656

Query: 1574 NILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGCLDETNTLEY 1395
            NILKEMLNCGY PD+EPFLSMMLQTFRASKLLDLR +TRIFIPNGR+MMGCLDE+ TLEY
Sbjct: 657  NILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEY 716

Query: 1394 GEVFVQYSGAGRRKFCEDSQLFYENYSENA-FILKGTVVVAKNPCLHPGDIRVLKAVNVP 1218
            G+VFVQ+SGAGRR+F E+S  F ++ S N  FILKG VVVAKNPCLHPGDIRVL+AV+VP
Sbjct: 717  GQVFVQFSGAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVP 776

Query: 1217 ALQHMVDCVVXXXXX----------------IYFVCWDSDLIPPRQASPMDYTPAPTMQL 1086
            AL HMVDCVV                     IYFVCWD DLIPPRQ   MDYTPAPT QL
Sbjct: 777  ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTTQL 836

Query: 1085 DDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAKLFSIAVDFPK 906
            D +VTIEE+EEYFTNYI+NDSLGIIANAH V ADRE   AMSDPC +LA+LFSIAVDFPK
Sbjct: 837  DHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPK 896

Query: 905  TGVPAEIPPHLRVKEYPDFMEKPDKPTYISENVIGKLFRGVRDKAPHTSSIESFTREVAR 726
            TGVPAEIP  LR KEYPDFMEKPDKPTY SE VIGKLF+ V++K P  SSI +FTR+VAR
Sbjct: 897  TGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVAR 956

Query: 725  RSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDRR 546
            +SYD+D+ V GFEDYIDEAF YK+EYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDRR
Sbjct: 957  KSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRR 1016

Query: 545  KDAEAVGMAVRSLRKEARSWFKRGGELDDAYAKASAWYYVTYHHTYWGCYNEGLNRDHYI 366
            KDAEA+G+AVR LRKEAR+WFKR  ++DD  AKASAWY+VTYHHTYWG YNEGL RDH+I
Sbjct: 1017 KDAEAIGVAVRCLRKEARAWFKRRSDIDDMLAKASAWYHVTYHHTYWGLYNEGLKRDHFI 1076

Query: 365  SFPWCVYDKLIHIKRKKLISGRNQQMSSL 279
            SFPWCVYD+LI IK+ K        +SSL
Sbjct: 1077 SFPWCVYDQLIQIKKAKARKRPVPHLSSL 1105


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score = 1563 bits (4048), Expect = 0.0
 Identities = 785/1119 (70%), Positives = 917/1119 (81%), Gaps = 19/1119 (1%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSKGGSRAYARVQFRDNRSAEV 3369
            MGKTIQVFGFP+L+ AE V + LEKYTG G++ ALEVKQSKGGSRA+A+VQF DN SA+ 
Sbjct: 1    MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSKGGSRAFAKVQFADNISADK 60

Query: 3368 IISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKNA 3189
            II++A+ R LY+GSSYLKAWEM  D+V + RA+V QM+ + LNFGCQ+SD+KF VL  + 
Sbjct: 61   IITLANNR-LYFGSSYLKAWEMKTDIV-QLRAYVDQMDGITLNFGCQISDDKFAVLG-ST 117

Query: 3188 NVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRIF 3009
             VS++FGIGLKK +F+LS    DYKL+L  ENIWQ+VLHRP  + A FLLIQLFGAPRI+
Sbjct: 118  EVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIY 177

Query: 3008 KKLEASMFSYFEETQDDQWVRTTDFTPSCIGQSSCICLEIPRGVQLPKFADYFAWYKENE 2829
            K+LE S +S+F+ET DDQWVRTTDF PS IG SS +CL+  RGV+LP F + F  Y E E
Sbjct: 178  KRLENSCYSFFKETPDDQWVRTTDFPPSWIGLSSSLCLQFRRGVRLPNFEESFFHYAERE 237

Query: 2828 NPFVLGTISSYSCS--TVLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPKLDANFFWL 2655
            N   L T  ++  S  + LVP V+PP+G+ +PY ILFKI  LVQ+GC+PGP L+  FF L
Sbjct: 238  NNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGPALNVYFFRL 297

Query: 2654 VNPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSISLDEGLVYV 2475
            V+P+ R++  IE+ALE LY +KECCY+PVRWLTEQ+   +  ++ PKSPSI+LD+GLVYV
Sbjct: 298  VDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYV 357

Query: 2474 RRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDLVPRSSSGD 2295
            RRV VTPCKVYFCGPEVNVSNRVLR+YSEDIDNFLRVSF+DEEWEK+YSTDL+P++S+G 
Sbjct: 358  RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGS 417

Query: 2294 EKRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNAADIRAWMGD 2115
              RT IY RILS L++G VIG+KKF+FLAFSSSQLR+NSVWMFASRPGL A DIRAWMGD
Sbjct: 418  GVRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMGD 477

Query: 2114 FSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSDGIGKISAEF 1935
            FS I+NVAKYAARLGQSF SS ETLSV R EI++IPD++  G S  Y+FSDGIGKIS +F
Sbjct: 478  FSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISGDF 535

Query: 1934 ARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSDNTKLDVLAW 1755
            A RVASKCGL+ +TPSAFQIRYGG+KGVV +DP SS KLSLRKSM KY+SDN KLDVL W
Sbjct: 536  AHRVASKCGLQ-YTPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLGW 594

Query: 1754 SKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEALELMSPGENT 1575
            SKYQPC+LNRQLITLLSTLGVKD   E+KQ++AV +LD IL D L+AQEALELMSPGENT
Sbjct: 595  SKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENT 654

Query: 1574 NILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGCLDETNTLEY 1395
            NILK MLNCGYKPD+EPFLSMMLQTFRASKLLDLR ++RIFIPNGR+MMGCLDE+ TLEY
Sbjct: 655  NILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEY 714

Query: 1394 GEVFVQYSGAGRRKFCEDSQLFYENYSENA-FILKGTVVVAKNPCLHPGDIRVLKAVNVP 1218
            G+VFVQ++GAG  +F +D   F  + S N+ FILKG VVVAKNPCLHPGDIRVLKAVNV 
Sbjct: 715  GQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVR 774

Query: 1217 ALQHMVDCVVXXXXX----------------IYFVCWDSDLIPPRQASPMDYTPAPTMQL 1086
            AL HMVDCVV                     IYFVCWD D+IPPRQ  PM+Y PAP++QL
Sbjct: 775  ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQL 834

Query: 1085 DDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAKLFSIAVDFPK 906
            D +VTIEE+EEYFTNYIVNDSLGIIANAH V ADRE   AMSDPC +LA+LFSIAVDFPK
Sbjct: 835  DHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPK 894

Query: 905  TGVPAEIPPHLRVKEYPDFMEKPDKPTYISENVIGKLFRGVRDKAPHTSSIESFTREVAR 726
            TGVPAEIP  LR KEYPDFM+KPDK +YISE VIGKLFR V+DKAP  SSI +FTR+VAR
Sbjct: 895  TGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVAR 954

Query: 725  RSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDRR 546
            RSYD D+EV GFEDYIDEAF+YKTEYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDRR
Sbjct: 955  RSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRR 1014

Query: 545  KDAEAVGMAVRSLRKEARSWFKRGGELDDAYAKASAWYYVTYHHTYWGCYNEGLNRDHYI 366
            KDAEA+ +AVR+LRKEAR+WFKR  ++DD   KASAWY+VTYH TYWGCYN+GL R H+I
Sbjct: 1015 KDAEAISVAVRALRKEARAWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRAHFI 1074

Query: 365  SFPWCVYDKLIHIKRKKLISGRNQQMSSLEWEFNHGLRL 249
            SFPWCVYD+LI IK+ K  +     +SSL  + +H L L
Sbjct: 1075 SFPWCVYDQLIQIKKDKARNRPVLNLSSLRAQLSHRLVL 1113


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score = 1562 bits (4045), Expect = 0.0
 Identities = 788/1120 (70%), Positives = 918/1120 (81%), Gaps = 20/1120 (1%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSKGGSRAYARVQFRDNRSAEV 3369
            MGKTIQV+GFP L+ AE V + LEK+TG G++ ALEVKQSKGGSRA+A+VQF DN SA+ 
Sbjct: 1    MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60

Query: 3368 IISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKNA 3189
            II++AS +RLY+GSSYLKAWEM  D+V + RA+V  M+ + LNFGCQ+SD+KF VL  + 
Sbjct: 61   IINLAS-KRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISDDKFAVLG-ST 117

Query: 3188 NVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRIF 3009
             VS+KFGIGLKK +F+LS    DYKL+L  ENIWQ+VLHRP  + A FLLIQLFGAPRI+
Sbjct: 118  EVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIY 177

Query: 3008 KKLEASMFSYFEETQDDQWVRTTDFTPSCIGQSSCICLEIPRGVQLPKFADYFAWYKENE 2829
            K+LE S +S+F+ET DDQWVRTTDF PS IG SS +CL+  RGV LP F + F  Y E E
Sbjct: 178  KRLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERE 237

Query: 2828 NPFVLGTISSYSCS--TVLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPKLDANFFWL 2655
            N   L T  ++  S  + LVP V+PP+G+ +PY ILFKI  LVQ+GC+PGP L+ NFF L
Sbjct: 238  NNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVNFFRL 297

Query: 2654 VNPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSISLDEGLVYV 2475
            V+PQ R++  IE ALE LY LKECCY+PVRWLTEQ+   +  ++ PKSPSI+LD+GLVYV
Sbjct: 298  VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYV 357

Query: 2474 RRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDLVPRSSSGD 2295
            RRV VTPCKVYFCGPEVNVSNRVLR+YSEDIDNFLRVSF+DEEWEK+YSTDL+P++S+G+
Sbjct: 358  RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGN 417

Query: 2294 EKRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNAADIRAWMGD 2115
              RT IY RILS L++G VIG+KKF+FLAFSSSQLR+NSVWMFASRPGL A DIR WMGD
Sbjct: 418  GIRTNIYVRILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGD 477

Query: 2114 FSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSDGIGKISAEF 1935
            FS I+NVAKYAARLGQSF SS ETLSV R EI++IPD++  G S  Y+FSDGIGKISA+F
Sbjct: 478  FSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEIIPDVKVHGTS--YVFSDGIGKISADF 535

Query: 1934 ARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSDNTKLDVLAW 1755
            ARRVASKCGL ++TPSAFQIRYGG+KGVVA+DP SS KLSLRKSM KY+SDN KLDVL W
Sbjct: 536  ARRVASKCGL-QYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEW 594

Query: 1754 SKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEALELMSPGENT 1575
            SKYQPCFLNRQL+TLLSTLGVKD   E+KQ++AV +LD IL D L+AQEALELMSPGENT
Sbjct: 595  SKYQPCFLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENT 654

Query: 1574 NILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGCLDETNTLEY 1395
            NILK MLNCGY PD+EPFLSMMLQTFRASKLLDLR ++RIFIPNGR+MMGCLDE+ TLEY
Sbjct: 655  NILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEY 714

Query: 1394 GEVFVQYSGAGRRKFCEDSQLFYENYSENA-FILKGTVVVAKNPCLHPGDIRVLKAVNVP 1218
            G+VFVQ++G+G R+F ED   F  + S N  FILKG VVVAKNPCLHPGDIRVL+AV+VP
Sbjct: 715  GQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVP 774

Query: 1217 ALQHMVDCVV----------------XXXXXIYFVCWDSDLIPPRQASPMDYTPAPTMQL 1086
            AL HMVDCVV                     IYFVCWD D+IPPRQ   M+Y PAP++QL
Sbjct: 775  ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQL 834

Query: 1085 DDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAKLFSIAVDFPK 906
            D +VTIEE+EEYFTNYIVNDSLGIIANAH V ADRE   AMSDPC +LA+LFSIAVDFPK
Sbjct: 835  DHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPK 894

Query: 905  TGVPAEIPPHLRVKEYPDFMEK-PDKPTYISENVIGKLFRGVRDKAPHTSSIESFTREVA 729
            TGVPAEIP  LR KEYPDFM+K PDK TYISE VIGKL+R V+DKAP  SS   FTR+VA
Sbjct: 895  TGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVA 954

Query: 728  RRSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDR 549
            RRSYD DLEV GFEDYIDEAF+YKTEYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDR
Sbjct: 955  RRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDR 1014

Query: 548  RKDAEAVGMAVRSLRKEARSWFKRGGELDDAYAKASAWYYVTYHHTYWGCYNEGLNRDHY 369
            RKDAEA+ +AVR+LRKEAR+WFKR  ++DD   KASAWY+VTYH TYWGCYN+GL RDH+
Sbjct: 1015 RKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHF 1074

Query: 368  ISFPWCVYDKLIHIKRKKLISGRNQQMSSLEWEFNHGLRL 249
            ISFPWCVYD+LI IK++K ++     +SSL  + +H L L
Sbjct: 1075 ISFPWCVYDQLIQIKKEKALNRPVLNLSSLRAQLSHKLVL 1114


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score = 1561 bits (4043), Expect = 0.0
 Identities = 785/1121 (70%), Positives = 914/1121 (81%), Gaps = 20/1121 (1%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSKGGSRAYARVQFRDNRSAEV 3369
            MGKTIQVFGFP+L+ AEAV   LE +TGNG++YALEVKQSKGG RA+A+VQF +N+SAE+
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEI 60

Query: 3368 IISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKNA 3189
            II +AS + LYYG SYLKAWEM   +V +PR +V  M+ + LNFGCQ+SD KF VL    
Sbjct: 61   IIDLAS-KGLYYGPSYLKAWEMKTYIV-QPRTYVQHMDGVTLNFGCQISDKKFAVLGSKV 118

Query: 3188 NVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRIF 3009
             VS+KFGIGLKKIYF+LS    DYKL+L  ENIWQ+VLHRP  + A FLL+QL GAPRI+
Sbjct: 119  -VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPRIY 177

Query: 3008 KKLEASMFSYFEETQDDQWVRTTDFTPSCIGQSSCICLEIPRGVQLPKFADYFAWYKENE 2829
            K+LE S +S+F+ET DDQWVRTTDFTPS IG SS +CLE   GV+LP F++ F +YKE+ 
Sbjct: 178  KRLEDSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFHNGVRLPNFSESFFYYKESA 237

Query: 2828 NPFVLGTISSYSCST---VLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPKLDANFFW 2658
            N  +L T  ++S S     LVPIV  P+G+ELPY ILFKI  L+Q+GC PG  L+ NFF 
Sbjct: 238  NQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQ 297

Query: 2657 LVNPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSISLDEGLVY 2478
            LV+P+ R+I  IE+ALE LY LKECCY+PVRWLTEQ+ + +  +++PKSPSI+LD+GLVY
Sbjct: 298  LVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLVY 357

Query: 2477 VRRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDLVPRSSSG 2298
            VRRV VTPCKVYFCGPEVNVSNRVLR+YSEDIDNFLRVSF+DEEWEK++STDL+PR+S+G
Sbjct: 358  VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRASTG 417

Query: 2297 DEKRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNAADIRAWMG 2118
            +  RT IY RILS L+ G VIG+KKF+FLAFSSSQLR+NSVWMFASRPGL A DIR WMG
Sbjct: 418  NGVRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMG 477

Query: 2117 DFSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSDGIGKISAE 1938
             F  IRNVAKYAARLGQSF SS ETLSV R E+++IPD+        YIFSDGIGKISA+
Sbjct: 478  GFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISAD 537

Query: 1937 FARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSDNTKLDVLA 1758
            FARRVA KCGL+ +TPS FQIRYGG+KGVVA+DP SS KLSLR SM+KY+S+N KLDVL 
Sbjct: 538  FARRVAVKCGLQ-YTPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVLG 596

Query: 1757 WSKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEALELMSPGEN 1578
            WSKYQPC+LNRQL+TLLSTLGVKD  FE+KQ +AV +LD IL D L+AQEALELMSPGEN
Sbjct: 597  WSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGEN 656

Query: 1577 TNILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGCLDETNTLE 1398
            TNILKEMLNCGY PD+EPFLSMMLQTFRASKLLDLR ++RIFIPNGR+MMGCLDE+ TLE
Sbjct: 657  TNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLE 716

Query: 1397 YGEVFVQYSGAGRRKFCEDSQLFYENYSENA-FILKGTVVVAKNPCLHPGDIRVLKAVNV 1221
            YG+VFVQ++G GRR+F E+S  F ++ S N  FIL+G VVVAKNPCLHPGDIRVL+AV+V
Sbjct: 717  YGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDV 776

Query: 1220 PALQHMVDCVVXXXXX----------------IYFVCWDSDLIPPRQASPMDYTPAPTMQ 1089
            PAL HMVDCVV                     IYFVCWD DL+PPRQ  PMDYTPAP+ Q
Sbjct: 777  PALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQ 836

Query: 1088 LDDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAKLFSIAVDFP 909
            LD +VTIEE+EEYFTNYIVNDSLGIIANAH V ADRE   AMSDPC +LA+LFSIAVDFP
Sbjct: 837  LDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFP 896

Query: 908  KTGVPAEIPPHLRVKEYPDFMEKPDKPTYISENVIGKLFRGVRDKAPHTSSIESFTREVA 729
            KTGVPAEIP  LR KEYPDFMEKPDKPTY SE VIGKLF+ V+DK P  SSI +FT +VA
Sbjct: 897  KTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVA 956

Query: 728  RRSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDR 549
            R+SYD D+ V GFEDYIDEAF YK+EYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDR
Sbjct: 957  RKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDR 1016

Query: 548  RKDAEAVGMAVRSLRKEARSWFKRGGELDDAYAKASAWYYVTYHHTYWGCYNEGLNRDHY 369
            RKDA+A+G+AVRSLRKEAR+WFKR  ++DD  AKASAWY+VTYHHTYWG YNEGL RDH+
Sbjct: 1017 RKDADAIGVAVRSLRKEARTWFKRRSDIDDMLAKASAWYHVTYHHTYWGFYNEGLKRDHF 1076

Query: 368  ISFPWCVYDKLIHIKRKKLISGRNQQMSSLEWEFNHGLRLI 246
            ISFPWC+YD+LI IK+ K        +SSL  + +  L LI
Sbjct: 1077 ISFPWCIYDQLIQIKKAKARKKPVLHLSSLGNQLSRKLVLI 1117


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score = 1555 bits (4027), Expect = 0.0
 Identities = 788/1120 (70%), Positives = 915/1120 (81%), Gaps = 20/1120 (1%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSKGGSRAYARVQFRDNRSAEV 3369
            MGKTIQVFGFP L+ AE V   LEK+TG G+I ALEVKQSKGGSRA+A+VQF DN SA+ 
Sbjct: 1    MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSKGGSRAFAKVQFVDNISADK 60

Query: 3368 IISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKNA 3189
            II++AS +RLY+GSSYLKAWEM  D+V + RA+V  M+ + LNFGCQ+S++KF VL  + 
Sbjct: 61   IINLAS-KRLYFGSSYLKAWEMKTDIV-QLRAYVDHMDGITLNFGCQISEDKFAVLG-ST 117

Query: 3188 NVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRIF 3009
             VS+KFGIGLKK +F+LS    DYKL+L  ENIWQ+VLHRP  + A FLLIQLFGAPRI+
Sbjct: 118  EVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIY 177

Query: 3008 KKLEASMFSYFEETQDDQWVRTTDFTPSCIGQSSCICLEIPRGVQLPKFADYFAWYKENE 2829
            K+LE S +S+F+ET DDQWVRTTDFTPS IG SS +CL+  RGV LP F + F  Y E E
Sbjct: 178  KRLENSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERE 237

Query: 2828 NPFVLGTISSYSCS--TVLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPKLDANFFWL 2655
            N   L T  ++  S  + LVP V+PP+G+ +PY ILFKI  LVQ+GC+PGP L+  FF L
Sbjct: 238  NNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRL 297

Query: 2654 VNPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSISLDEGLVYV 2475
            V+PQ R++  IE ALE LY LKECCY+PVRWLTEQ+   +  ++ PKSPSI+LD+GLVYV
Sbjct: 298  VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYV 357

Query: 2474 RRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDLVPRSSSGD 2295
            RRV VTPCKVYFCGPEVNVSNRVLR+YSEDIDNFLRVSF+DEEWEK+YST+L+P++S+G+
Sbjct: 358  RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGN 417

Query: 2294 EKRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNAADIRAWMGD 2115
              RT IY RILS L++G VIG+KKF+FLAFSSSQLR+NSVWMFASR GL   DIR+WMGD
Sbjct: 418  GIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGD 477

Query: 2114 FSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSDGIGKISAEF 1935
            FS I+NVAKYAARLGQSF SS ETLSV R EI++IPD++  G S  Y+FSDGIGKISA+F
Sbjct: 478  FSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADF 535

Query: 1934 ARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSDNTKLDVLAW 1755
            ARRVASKCGL ++TPSAFQIRYGG+KGVVA+DP SS KLSLRKSM KY+SDN KLDVL W
Sbjct: 536  ARRVASKCGL-QYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGW 594

Query: 1754 SKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEALELMSPGENT 1575
            SKYQPC+LNRQL+TLLSTLGVKD   E+KQ++AV +LD IL D L+AQEALELMSPGENT
Sbjct: 595  SKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENT 654

Query: 1574 NILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGCLDETNTLEY 1395
            NILK MLNCGY PD+EPFLSMMLQTFRASKLLDLR ++RIFIPNGR+MMGCLDE+ TLEY
Sbjct: 655  NILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEY 714

Query: 1394 GEVFVQYSGAGRRKFCEDSQLFYENYSENA-FILKGTVVVAKNPCLHPGDIRVLKAVNVP 1218
            G+VFVQ++GAG R+F ED   F  + S N  FILKG VVVAKNPCLHPGDIRVL+AV+VP
Sbjct: 715  GQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVP 774

Query: 1217 ALQHMVDCVV----------------XXXXXIYFVCWDSDLIPPRQASPMDYTPAPTMQL 1086
            AL HMVDCVV                     IYFVCWD D+IPPRQ   M+Y PAP++QL
Sbjct: 775  ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQL 834

Query: 1085 DDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAKLFSIAVDFPK 906
            D  VTIEE+EEYFTNYIVNDSLGIIANAH V ADRE   AMSDPC +LA+LFSIAVDFPK
Sbjct: 835  DHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPK 894

Query: 905  TGVPAEIPPHLRVKEYPDFMEK-PDKPTYISENVIGKLFRGVRDKAPHTSSIESFTREVA 729
            TGVPAEIP  LR KEYPDFM+K PDK TYISE VIGKLFR V+DKAP  SSI  FTR+VA
Sbjct: 895  TGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVA 954

Query: 728  RRSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDR 549
            RRSYD DLEV GFEDYIDEAF+YKTEYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDR
Sbjct: 955  RRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDR 1014

Query: 548  RKDAEAVGMAVRSLRKEARSWFKRGGELDDAYAKASAWYYVTYHHTYWGCYNEGLNRDHY 369
            RKDAEA+ +AVR+LRKEAR+WFKR  ++DD   KASAWY+VTYH TYWGCYN+GL RDH+
Sbjct: 1015 RKDAEAISVAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHF 1074

Query: 368  ISFPWCVYDKLIHIKRKKLISGRNQQMSSLEWEFNHGLRL 249
            ISFPWCVYD+LI IK++K  +     +SSL  + +H L L
Sbjct: 1075 ISFPWCVYDQLIQIKKEKARNRPVLNLSSLRAQLSHKLVL 1114


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score = 1547 bits (4005), Expect = 0.0
 Identities = 784/1120 (70%), Positives = 912/1120 (81%), Gaps = 20/1120 (1%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSKGGSRAYARVQFRDNRSAEV 3369
            MGKTIQV+GFP L+ AE V + LEK+TG G++ ALEVKQSKGGSRA+A+VQF DN SA+ 
Sbjct: 1    MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60

Query: 3368 IISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKNA 3189
            II++AS +RLY+GSSYLKA EM+ D+V +   +V  M+ + LNFGCQ+SD+KF VL  + 
Sbjct: 61   IINLAS-KRLYFGSSYLKAREMETDLV-QLWEYVDHMDGITLNFGCQISDDKFAVLG-ST 117

Query: 3188 NVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRIF 3009
             VS+KFGIGLKK +F+LS    DYKL+L  ENIWQ+VLHRP  + A FLLIQLFGAPRI+
Sbjct: 118  EVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIY 177

Query: 3008 KKLEASMFSYFEETQDDQWVRTTDFTPSCIGQSSCICLEIPRGVQLPKFADYFAWYKENE 2829
            K+LE S +S+F+ET DDQWVRTTDF PS IG SS +CL+  RGV LP F + F  Y E E
Sbjct: 178  KRLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERE 237

Query: 2828 NPFVLGTISSYSCS--TVLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPKLDANFFWL 2655
            N   L T  ++  S  + LVP V+PP+G+ +PY ILFKI  LVQ+GC+PGP L+  FF L
Sbjct: 238  NNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRL 297

Query: 2654 VNPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSISLDEGLVYV 2475
            V+PQ R++  IE ALE LY LKECCY+PVRWLTEQ+   +  ++ PKSPSI+LD+GLVYV
Sbjct: 298  VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYV 357

Query: 2474 RRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDLVPRSSSGD 2295
            RRV VTPCKVYFCGPEVNVSNRVLR+YSEDIDNFLRVSF+DEEWEK+YSTDL+P++S+G+
Sbjct: 358  RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGN 417

Query: 2294 EKRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNAADIRAWMGD 2115
              RT IY RILS L++G VIG+KKF+FLAFSSSQLR+NSVWMFASRPGL A DIR WMGD
Sbjct: 418  GIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGD 477

Query: 2114 FSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSDGIGKISAEF 1935
            FS I+NVAKYAARLGQSF SSTETLSV R EI++IPD++  G S  Y+FSDGIGKISA+F
Sbjct: 478  FSQIKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADF 535

Query: 1934 ARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSDNTKLDVLAW 1755
            ARRVASKCGL + TPSAFQIRYGG+KGVVA+DP SS KLSLRKSM KY+SDN KLDVL W
Sbjct: 536  ARRVASKCGL-QHTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGW 594

Query: 1754 SKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEALELMSPGENT 1575
            SKYQPC+LNRQL+TLLSTLGVKD   E+KQ++AV +LD IL D L+AQEALELMSPGENT
Sbjct: 595  SKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENT 654

Query: 1574 NILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGCLDETNTLEY 1395
            NILK MLNCGY PD+EPFLSMMLQTFRASKLLDLR K+RIFIPNGR MMGCLDE+ TLEY
Sbjct: 655  NILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTLEY 714

Query: 1394 GEVFVQYSGAGRRKFCEDSQLFYENYSENA-FILKGTVVVAKNPCLHPGDIRVLKAVNVP 1218
            G+VFVQ++G+G R+F ED   F  + S N  FILKG VVVAKNPCLHPGDIRVL+AV+VP
Sbjct: 715  GQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVP 774

Query: 1217 ALQHMVDCVV----------------XXXXXIYFVCWDSDLIPPRQASPMDYTPAPTMQL 1086
            AL HMVDCVV                     IYFVCWD D+IPPRQ   M+Y PAP++QL
Sbjct: 775  ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQL 834

Query: 1085 DDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAKLFSIAVDFPK 906
            D +VTIEE+EEYFTNYIVNDSLGIIANAH V ADRE   AMSDPC +LA+L SIAVDFPK
Sbjct: 835  DHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELCSIAVDFPK 894

Query: 905  TGVPAEIPPHLRVKEYPDFMEK-PDKPTYISENVIGKLFRGVRDKAPHTSSIESFTREVA 729
            TGVPAEIPP LR KEYPDFM+K PDK TYISE VIGKL+R V+DKAP  SS   FTR+VA
Sbjct: 895  TGVPAEIPPQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVA 954

Query: 728  RRSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDR 549
            RRSYD DLEV GFEDYIDEAF+YKTEYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDR
Sbjct: 955  RRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDR 1014

Query: 548  RKDAEAVGMAVRSLRKEARSWFKRGGELDDAYAKASAWYYVTYHHTYWGCYNEGLNRDHY 369
            RKDAEA+ +AVR+LRKEAR+WFKR  ++DD   KASAWY+VTYH TYWGCYN+GL RDH+
Sbjct: 1015 RKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHF 1074

Query: 368  ISFPWCVYDKLIHIKRKKLISGRNQQMSSLEWEFNHGLRL 249
            ISFPWCVYD+LI IK++K  +     +SSL  + +  L L
Sbjct: 1075 ISFPWCVYDQLIQIKKEKARNRPVLNLSSLRAQLSRKLVL 1114


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1535 bits (3975), Expect = 0.0
 Identities = 777/1124 (69%), Positives = 900/1124 (80%), Gaps = 24/1124 (2%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSKGG-SRAYARVQFRDNRSAE 3372
            M KTIQV+GFP +V A+ +   LEKYTG G+I ALE+KQ + G S  +A+VQF     AE
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60

Query: 3371 VIISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKN 3192
             II++   ++++YG +YLKA EMDLD++P+PRAF+H M+ + L+FGCQ+SD +F VLWK 
Sbjct: 61   FIITLCK-KKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKA 119

Query: 3191 ANVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRI 3012
             NVSVKFG GL+K YF+LS    +YKLEL  ENIWQI L  PR +   FLLIQL GAP+I
Sbjct: 120  INVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQI 179

Query: 3011 FKKLEASMFSYFEETQDDQWVRTTDFTPSC-IGQSSCICLEIPRGVQLPKFADYFAWYKE 2835
            ++K    +  YF+E  DDQWVR  DFTPSC IGQS  +CLE+P G QLP F + FA+YKE
Sbjct: 180  YEKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKE 239

Query: 2834 NENPFVLGTISSYSCSTVLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPKLDANFFWL 2655
            N+  F+L + SSYS +  LVPI+ PPQG  LP+ ILFKI  LVQNGCL GP LD +FF L
Sbjct: 240  NDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRL 299

Query: 2654 VNPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSISLDEGLVYV 2475
            V+P+   I +IE+ALE LY LKECCYEPVRWL+EQ++  +  + V  SP+ISLD GLVYV
Sbjct: 300  VDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVK-KPVAGSPAISLDTGLVYV 358

Query: 2474 RRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDLVPRSSSGD 2295
            RRVQ+TPCKVYFCGPEVNVSNRVLR+Y EDIDNFLRVSF+DE  EK++ST + PR S  +
Sbjct: 359  RRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMSK-E 417

Query: 2294 EKRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNAADIRAWMGD 2115
             +RT +Y RILS+L+ GIVIG+KKFDFLAFSSSQLR+NS WMFASRPGL AA+IR+WMGD
Sbjct: 418  GRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGD 477

Query: 2114 FSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSDGIGKISAEF 1935
            FS IRNVAKYAARLGQSFSSS ETL V +DEI+ IPDIE       Y+FSDGIGKIS + 
Sbjct: 478  FSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQL 537

Query: 1934 ARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSDNTKLDVLAW 1755
            A RVA KCG K  TPSAFQIRYGG+KGVVA+DPTSSRKLSLRKSM KY+SDNT LDVLAW
Sbjct: 538  AHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAW 597

Query: 1754 SKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEALELMSPGENT 1575
            SKYQP FLNRQLITLLSTLGVKDH FEKKQR AV +LD IL DP+ AQEALELMSPGENT
Sbjct: 598  SKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENT 657

Query: 1574 NILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGCLDETNTLEY 1395
            N+LKEML CGYKPD+EPFLSMMLQTFRA+KLL+LR KTRIF+PNGRSMMGCLDET TLEY
Sbjct: 658  NVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEY 717

Query: 1394 GEVFVQYSGAGRRKFCEDSQLFYENYS-ENAFILKGTVVVAKNPCLHPGDIRVLKAVNVP 1218
            GEVFVQ SG G R+   DS +F  + S  + FIL+G +VVAKNPCLHPGD+RVL AVNVP
Sbjct: 718  GEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVP 777

Query: 1217 ALQHMVDCVV----------------XXXXXIYFVCWDSDLIPPRQASPMDYTPAPTMQL 1086
             L HMVDCVV                     IYFVCWD DLIPP+Q +PMDYTPAPT  L
Sbjct: 778  TLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVL 837

Query: 1085 DDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAKLFSIAVDFPK 906
            D +V IEE+EEYFTNYIVNDSLGIIANAHTV AD+E  KA  DPC ELAKLFSIAVDFPK
Sbjct: 838  DHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPK 897

Query: 905  TGVPAEIPPHLRVKEYPDFMEKPDKPTYISENVIGKLFRGVRDKAPHTSSIESFTREVAR 726
            TGVPAEIP +LRVKEYPDFMEK DKPTY S++VIGKLFR V+D APH  +I SFTR+VAR
Sbjct: 898  TGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVAR 957

Query: 725  RSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDRR 546
            +SYD D+EV GFEDY+ +AF YK+EYDYKLGNLMDYYGIKTE+EILSG IM+MSKSFDRR
Sbjct: 958  QSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRR 1017

Query: 545  KDAEAVGMAVRSLRKEARSWFKRGG-----ELDDAYAKASAWYYVTYHHTYWGCYNEGLN 381
            KDAEA+G+AV+SLRKEAR+WF + G     E DD YAKASAWY+VTYH  YWGCYNEG++
Sbjct: 1018 KDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMD 1077

Query: 380  RDHYISFPWCVYDKLIHIKRKKLISGRNQQMSSLEWEFNHGLRL 249
            RDH++SFPWCVYDKLIH KRKK+ SGR+  +SSLE   + GLRL
Sbjct: 1078 RDHFLSFPWCVYDKLIHTKRKKM-SGRSLHLSSLERRLSQGLRL 1120


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score = 1505 bits (3897), Expect = 0.0
 Identities = 761/1072 (70%), Positives = 881/1072 (82%), Gaps = 20/1072 (1%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSKGGSRAYARVQFRDNRSAEV 3369
            MGKTIQV+GFP L+PAE V + LEK+TG G++ AL+VKQSKGGSRA+A+VQF DN SA+ 
Sbjct: 1    MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 60

Query: 3368 IISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKNA 3189
            II++AS +RLY+GSSYLKAWEM  D+V    A+V  M+ + LNFGCQ+SD+KF VL  + 
Sbjct: 61   IINLAS-KRLYFGSSYLKAWEMKTDIVQV--AYVDHMDGITLNFGCQISDDKFAVLG-ST 116

Query: 3188 NVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRIF 3009
             VS+KFGIGLKKIYF+LS    DYKL+L  ENIWQ+VLHRP  + A FLLIQLFGAPRI+
Sbjct: 117  EVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIY 176

Query: 3008 KKLEASMFSYFEETQDDQWVRTTDFTPSCIGQSSCICLEIPRGVQLPKFADYFAWYKENE 2829
            K+LE S +S+F+ET DDQWVRTTDF PS IG SS +CL+  RGV LP F + F  Y E E
Sbjct: 177  KRLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERE 236

Query: 2828 NPFVLGTISSYSCS--TVLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPKLDANFFWL 2655
            N   L T  ++  S  + LVP V+PP+G+ +PY ILFKI  LVQ+GC+PGP L+  FF L
Sbjct: 237  NNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRL 296

Query: 2654 VNPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSISLDEGLVYV 2475
            V+PQ R++  IE ALE LY LKECCY+PVRWLTEQ+   +  ++ PKSPSI+LD+GLVYV
Sbjct: 297  VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYV 356

Query: 2474 RRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDLVPRSSSGD 2295
            RRV VTPCKVYFCGPEVNVSNRVLR+YSEDIDNFLRVSF+DEEWEK+YST+L+P++S+G+
Sbjct: 357  RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGN 416

Query: 2294 EKRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNAADIRAWMGD 2115
              RT IY RILS +++G VIG+KKF+FLAFSSSQLR+NSVWMFASRPGL A DIR WMGD
Sbjct: 417  GIRTNIYERILSTMQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGD 476

Query: 2114 FSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSDGIGKISAEF 1935
            FS I+NVAKYAARLGQSF SS ETLSV R EI++IPD++  G S  Y+FSDGIGKISA+F
Sbjct: 477  FSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGKISADF 534

Query: 1934 ARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSDNTKLDVLAW 1755
            ARRVASKCGL ++TPSAFQIRYGG+KGVVA+DP SS KLSLRKSM KY+SDN KLDVL W
Sbjct: 535  ARRVASKCGL-QYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGW 593

Query: 1754 SKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEALELMSPGENT 1575
            SKYQPC+LNRQLITLLSTLGVKD   E+KQ++AV +LD IL D L+AQEALELMSPGENT
Sbjct: 594  SKYQPCYLNRQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENT 653

Query: 1574 NILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGCLDETNTLEY 1395
            NILK MLNCGY PD+EPFLSMMLQTFRASKLLDLR K+RIFIPNGR+MMGCLDE+ TLEY
Sbjct: 654  NILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEY 713

Query: 1394 GEVFVQYSGAGRRKFCEDSQLFYENYSENA-FILKGTVVVAKNPCLHPGDIRVLKAVNVP 1218
            G+VFVQ++GAG R+F ED   F  + S N  FILKG VVVAKNPCLHPGDIRVL+AV+VP
Sbjct: 714  GQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVP 773

Query: 1217 ALQHMVDCVV----------------XXXXXIYFVCWDSDLIPPRQASPMDYTPAPTMQL 1086
            AL HMVDCVV                     IYFVCWD D+IPPRQ  PM+Y PAP++QL
Sbjct: 774  ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQL 833

Query: 1085 DDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAKLFSIAVDFPK 906
            D +VTIEE+EEYFTNYIVNDSLGII+NAH V ADRE   AMSDPC +LA+L SIAVDFPK
Sbjct: 834  DHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPK 893

Query: 905  TGVPAEIPPHLRVKEYPDFMEK-PDKPTYISENVIGKLFRGVRDKAPHTSSIESFTREVA 729
            TGVPAEIP   R KEYPDFM+K PDK TYISE VIGKL+R V+DKAP  SS   FTR+VA
Sbjct: 894  TGVPAEIPSQWRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVA 953

Query: 728  RRSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDR 549
            RRSYD DLEV GFEDYIDEAF+YKTEYD KLGNLMDYYGIKTEAEILSGGIMK SK+FDR
Sbjct: 954  RRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDR 1013

Query: 548  RKDAEAVGMAVRSLRKEARSWFKRGGELDDAYAKASAWYYVTYHHTYWGCYN 393
            RKDAEA+ +AVR+LRKEAR+WFKR  ++DD   KASAWY+VTYH TYWGCYN
Sbjct: 1014 RKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYN 1065


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score = 1497 bits (3876), Expect = 0.0
 Identities = 763/1133 (67%), Positives = 897/1133 (79%), Gaps = 33/1133 (2%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSKGG-SRAYARVQFRDNRSAE 3372
            MGKTIQVFGFP  V AEAV + LE  TG G++YAL+++  K G  R YA VQF    +A+
Sbjct: 1    MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPKKGVGRLYAIVQFTTKEAAD 60

Query: 3371 VIISMASG-RRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWK 3195
             IIS+A    +L+YG SYL A  M+ D VPRPR F+H ME + L+FGC++S+ KF VLW+
Sbjct: 61   TIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLWR 120

Query: 3194 NANVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPR 3015
              NV+V FG G++KI F LS    +Y+LEL  ENIW+I LH PR +   +LLIQL GAPR
Sbjct: 121  GVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPR 180

Query: 3014 IFKK--------LEASMFSYFEETQDDQWVRTTDFTPS-CIGQSSCICLEIPRGVQLPKF 2862
            IF+K         E+ +F++F+E  DDQWVRTTDFTPS  IGQS+ +C+E+P  ++LP F
Sbjct: 181  IFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDF 240

Query: 2861 ADYFAWYKENENPFVLGTISSYSCSTVLVPIVRPPQGLELPYGILFKICCLVQNGCLPGP 2682
             + FA+YKE+E+ FVL T S+YS S  LVPIV PP G+ LPY ILFKI  LVQNGC+ GP
Sbjct: 241  KENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGP 300

Query: 2681 KLDANFFWLVNPQNR--DIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSP 2508
             LD+NF+ LV+P      I  IE+AL+ LY LKECCYEP RWLT+Q++K +  +  P SP
Sbjct: 301  LLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSP 360

Query: 2507 SISLDEGLVYVRRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYS 2328
            +ISLD+GLVYV RVQVTP +VYFCGPE+NVSNRVLRH+  DIDNFLR+SFIDE+ +K++S
Sbjct: 361  AISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 420

Query: 2327 TDLVPRSSSG-DEKRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPG 2151
            TDL PR SS  D  RT+IY RILS L+ GI+IG++KF+FLAFSSSQLRE+S WMFASR G
Sbjct: 421  TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG 480

Query: 2150 LNAADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYI 1971
            L AA+IR WMG+F  IRNVAKYAARLGQSFSSS ETLSV  DEI++IPD++      KY+
Sbjct: 481  LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYV 540

Query: 1970 FSDGIGKISAEFARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKY 1791
            FSDGIGK+SAEFAR+VASKCGLK   PSAFQIRYGG+KGVVA DPTSS+KLSLR SM KY
Sbjct: 541  FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKY 600

Query: 1790 DSDNTKLDVLAWSKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQ 1611
            +S+ TKLDVLAWSKYQPCFLNRQLI+LLSTLG+ D  FEKKQR+AV +LD ILTDPL+AQ
Sbjct: 601  ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 660

Query: 1610 EALELMSPGENTNILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSM 1431
            EALELMSPGENTNILKE+L CGYKPD+EPFLSMMLQTFRASKLL+LR KTRIFIPNGRSM
Sbjct: 661  EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 720

Query: 1430 MGCLDETNTLEYGEVFVQYSGAGRRKFCEDSQLFYENYSENAFILKGTVVVAKNPCLHPG 1251
            MGCLDET TL YG+VFVQ SGAG R+   +S LF  + S   FI++G VVVAKNPCLHPG
Sbjct: 721  MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 780

Query: 1250 DIRVLKAVNVPALQHMVDCVV----------------XXXXXIYFVCWDSDLIPPRQASP 1119
            D+RVLKAVNVPAL HMVDCVV                     IYFVCWD +LIPP+Q  P
Sbjct: 781  DVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPP 840

Query: 1118 MDYTPAPTMQLDDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELA 939
            MDYTPA +MQLD +V IE++EEYFTNYIVNDSLGIIANAHTV ADRE  KA S+PCL+LA
Sbjct: 841  MDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCLQLA 900

Query: 938  KLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKPDKPTYISENVIGKLFRGVRDKAPHTS 759
            + FSIAVDFPKTGVPAEIPPHL VKEYPDFMEKPDKPTY S+NVIGKLFR V+D APHTS
Sbjct: 901  EKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTS 960

Query: 758  SIESFTREVARRSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGG 579
             I  FT+EVARRSYD D+EV GFED+ID+A  +K  YDYKLGNLMDYYGIKTEAEIL+G 
Sbjct: 961  CIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGS 1020

Query: 578  IMKMSKSFDRRKDAEAVGMAVRSLRKEARSWFKR--GGEL-DDAYAKASAWYYVTYHHTY 408
            IMKMSKSF +R+DAEA+GMAVR+LRKEAR+WFK   G +  DDAYAKASAWY+VTYH  Y
Sbjct: 1021 IMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDY 1080

Query: 407  WGCYNEGLNRDHYISFPWCVYDKLIHIKRKKLISGRNQQMSSLEWEFNHGLRL 249
            WGCYN G+NRDH++SFPWCVYD+L+ IK+ K   G      +LE +F  GLR+
Sbjct: 1081 WGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTSIG--NAFPALEQQFRQGLRM 1131


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score = 1488 bits (3851), Expect = 0.0
 Identities = 757/1103 (68%), Positives = 879/1103 (79%), Gaps = 24/1103 (2%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSKGG-SRAYARVQFRDNRSAE 3372
            MGKTIQV+G P  V A  +   LEKYTG G+I ALE+KQ K G S  +A+VQF   R AE
Sbjct: 1    MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60

Query: 3371 VIISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKN 3192
            +IIS+A  ++L+YG +YLKA EMDLD++P+PR F+H M+ + L+FG Q+S+ +F VLWK 
Sbjct: 61   LIISLA--KQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKA 118

Query: 3191 ANVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRI 3012
             NVSVKFG GL+K YF+LS    +YKLEL  ENIWQI L  PR +   FLLIQL  AP+I
Sbjct: 119  INVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQI 178

Query: 3011 FKKLEASMFSYFEETQDDQWVRTTDFTPSC-IGQSSCICLEIPRGVQLPKFADYFAWYKE 2835
            ++K + S  SYF+ET DDQWVR  DFTPSC IGQSS +CLE+P G QLP F + FA YKE
Sbjct: 179  YEK-DVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCENFARYKE 237

Query: 2834 NENPFVLGTISSYSCSTVLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPKLDANFFWL 2655
            N+  F+L + +S+S +  LVPIV PPQG  LP+ ILFKI  LVQNGCL GP LD NFF  
Sbjct: 238  NDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLDTNFFRW 297

Query: 2654 VNPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSISLDEGLVYV 2475
            V+PQ  +I +IE+ALE LY L+ECCYEPVRWL EQ++  I+ Q V  SP+ISLD GLVYV
Sbjct: 298  VDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYISKQ-VAGSPAISLDTGLVYV 356

Query: 2474 RRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDLVPRSSSGD 2295
            RRVQ+TPCKVYFCGPEVNVSNRVLR+Y EDIDNFLRVSF+DE  EK++ST + PR S+ +
Sbjct: 357  RRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVISPRMSN-E 415

Query: 2294 EKRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNAADIRAWMGD 2115
             +RT +Y RILS+L+ GIVIG+KKFDFLA SSSQLR+NS WMFASRPGL AADIR+ MGD
Sbjct: 416  GRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMGD 475

Query: 2114 FSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSDGIGKISAEF 1935
            FS IRNVAKYAARLGQSFSSS ETL V + EI++IPDIE       Y+FSDGIGKISAE 
Sbjct: 476  FSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSDGIGKISAEL 535

Query: 1934 ARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSDNTKLDVLAW 1755
            A RVA KCG K  TPSAFQIRYGG+KGVVA+DPTSSRKLSLRKSM KY+S+NT LDVL+W
Sbjct: 536  AHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSW 595

Query: 1754 SKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEALELMSPGENT 1575
            SKY+PCFLNRQLITLLSTLGVKDH FEKKQR+AV +LD IL DPLRAQEALELMSPGENT
Sbjct: 596  SKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENT 655

Query: 1574 NILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGCLDETNTLEY 1395
            NILKEML CGYKPD+EPFLSMMLQTFRA+KLL+LR KTRIF+PNGRSMMGCLDET TLEY
Sbjct: 656  NILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEY 715

Query: 1394 GEVFVQYSGAGRRKFCEDSQLFYENYS-ENAFILKGTVVVAKNPCLHPGDIRVLKAVNVP 1218
            GEVFVQ SG G R+   DS +FY + S  + FIL+G VVVAKNPCLHPGD+R+L AV+VP
Sbjct: 716  GEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVP 775

Query: 1217 ALQHMVDCVV----------------XXXXXIYFVCWDSDLIPPRQASPMDYTPAPTMQL 1086
            AL HMVDCVV                     IYFVCWD DLIPPRQ +PMDYTPAPT  L
Sbjct: 776  ALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVL 835

Query: 1085 DDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAKLFSIAVDFPK 906
            D +V IEE+EEYFTNYI ND LGIIANAHTV AD+E  KA+  PC ELAKLFSIA++FPK
Sbjct: 836  DHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKLFSIALEFPK 895

Query: 905  TGVPAEIPPHLRVKEYPDFMEKPDKPTYISENVIGKLFRGVRDKAPHTSSIESFTREVAR 726
            TGVPAEIP HL VKEYPDFMEK +KPTY S++VIGKLFR V+D APH   + SFTR+VA 
Sbjct: 896  TGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAM 955

Query: 725  RSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDRR 546
            +SYD D+EV GFEDY+ +AF YK++YD+KLG+LMD  GI+TE+EILSG IMKMSKSFD+R
Sbjct: 956  QSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSFDKR 1015

Query: 545  KDAEAVGMAVRSLRKEARSWFKRGGE-----LDDAYAKASAWYYVTYHHTYWGCYNEGLN 381
            KDAEA+ +AVRSLRKEAR+WF + G       DD YA ASAWY+VTYH  YWGCYNEG+ 
Sbjct: 1016 KDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNEGMY 1075

Query: 380  RDHYISFPWCVYDKLIHIKRKKL 312
             DH++SFPWCVYDKLI IKR K+
Sbjct: 1076 HDHFLSFPWCVYDKLIQIKRDKM 1098


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score = 1483 bits (3838), Expect = 0.0
 Identities = 746/1133 (65%), Positives = 891/1133 (78%), Gaps = 33/1133 (2%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSK-GGSRAYARVQFRDNRSAE 3372
            M KT++V GFP    A AV   LE +TG G++ AL++++ + GG+R YA VQF   R+AE
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60

Query: 3371 VIISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKN 3192
             IIS+A+ R L+YG SYL A  MD D++P+PR+F+H ME + L+FG Q S  KF  +W  
Sbjct: 61   QIISLANPR-LWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSG 119

Query: 3191 ANVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRI 3012
             NVSV FG+G++K++F+LS    +YKL LL ENIWQI LHRPR +T  +LLIQL+GAPRI
Sbjct: 120  NNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRI 179

Query: 3011 FKK--------LEASMFSYFEETQDDQWVRTTDFTPSC-IGQSSCICLEIPRGVQLPKFA 2859
            +++         E  + +YF +  D+QWVRTTDFTPSC IG SS +CLE+P  +QLP F 
Sbjct: 180  YERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFN 239

Query: 2858 DYFAWYKENENPFVLGTISSYSCSTVLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPK 2679
            + F +YKENE  FVL +  ++S +  LVPIV P  G+ LPY ILF++  LVQNGCL G  
Sbjct: 240  ENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSM 299

Query: 2678 LDANFFWLVNPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSIS 2499
            LD  F+ LV+P    +R IE ALE LY LKECCYEP +W  EQ+KK +     P+SP +S
Sbjct: 300  LDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLS 359

Query: 2498 LDEGLVYVRRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDL 2319
            LD GLVYV +VQ+TPCKV+FCGPEVNVSNRVLR Y EDIDNFLRVSF+DEE EK++STD+
Sbjct: 360  LDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDV 419

Query: 2318 VPRSSSGDE-KRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNA 2142
             PR+SS +E +RT IY+RILS L+ GIVIG+KKF+FLAFSSSQLRENS WMFASR GL A
Sbjct: 420  SPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTA 479

Query: 2141 ADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSD 1962
            ADIRAWMG F  IRNVA+YAARLGQSF SSTETLSV   EI++IPDIE      +Y+FSD
Sbjct: 480  ADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSD 539

Query: 1961 GIGKISAEFARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSD 1782
            GIGKISAEFAR+VA KCG K FTPSAFQIRY G+KGVVA+DPTSS+KLSLR+SM KY+S+
Sbjct: 540  GIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESE 599

Query: 1781 NTKLDVLAWSKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEAL 1602
            NTKLDVLA SKYQPCFLNRQLITLLSTLGV DH FE+KQR+AV +LD +LTDPLRAQEAL
Sbjct: 600  NTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEAL 659

Query: 1601 ELMSPGENTNILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGC 1422
            ELMSPGENTNILKEML CGY+PD+EPFLSMMLQTFRASKLL+LR KTRIFIPNGRSMMGC
Sbjct: 660  ELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 719

Query: 1421 LDETNTLEYGEVFVQYSGAGRRKFCEDSQLFYENYSENAFILKGTVVVAKNPCLHPGDIR 1242
            LDET TLE+G+VFV++SG+  R   + S +F E      +++KG+VVVAKNPCLHPGD+R
Sbjct: 720  LDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLR 779

Query: 1241 VLKAVNVPALQHMVDCVV----------------XXXXXIYFVCWDSDLIPPRQASPMDY 1110
            +LKAV+VPAL HMVDCVV                     IYFVCWD +LIP +Q SPMDY
Sbjct: 780  ILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDY 839

Query: 1109 TPAPTMQLDDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAKLF 930
            TP P +QLD +VTIEE+EEYFTNYIVNDSLG+IANAHT  AD+E+ KAMS+PC+ELA+ F
Sbjct: 840  TPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKF 899

Query: 929  SIAVDFPKTGVPAEIPPHLRVKEYPDFMEKPDKPTYISENVIGKLFRGVRDKAPHTSSIE 750
            SIAVDFPKTGVPAEIP +LR +EYPDFMEKPDKP+Y S NVIGKLFR V+D AP TSSI 
Sbjct: 900  SIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIR 959

Query: 749  SFTREVARRSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMK 570
            SFT +VAR+ YD D+EV GFEDYID+AF YK+ YDYKLGNLM+YYGIKTEAE+LSG  MK
Sbjct: 960  SFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMK 1019

Query: 569  MSKSFDRRKDAEAVGMAVRSLRKEARSWFKRGG-----ELDDAYAKASAWYYVTYHHTYW 405
            MSKSF +++DAEA+GMAVRSL+KEARSWF   G     + DD  AKASAWY+VTYHH YW
Sbjct: 1020 MSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYW 1079

Query: 404  GCYNEGLNRDHYISFPWCVYDKLIHIKRKKLIS-GRNQQMSSLEWEFNHGLRL 249
            GCYNEG+NRDH++SFPWCVYDKLI IKR+      R+  + S+E +F+ GL L
Sbjct: 1080 GCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHL 1132


>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao]
          Length = 1109

 Score = 1481 bits (3835), Expect = 0.0
 Identities = 760/1130 (67%), Positives = 893/1130 (79%), Gaps = 30/1130 (2%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSKGGSRAYARVQFRDNRSAEV 3369
            MGKTIQV  FP  V AE V   LE YTG  ++YAL+++Q K G RAYA VQF  +  AE+
Sbjct: 1    MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGGRAYAIVQFTKSTDAEL 60

Query: 3368 IISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKNA 3189
            II + + +RLYYGSSYLKA EM+ D+VP+PR F+H ME + L+FGCQVS+ KF VLW+  
Sbjct: 61   IIRLTN-QRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEV 119

Query: 3188 NVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRIF 3009
            +V+V FG+G++K+ F LS   V+Y+L+L  ENIWQI LHRPR++T+ +LLIQLFGAPRI+
Sbjct: 120  DVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRIY 179

Query: 3008 KK--------LEASMFSYFEETQDDQWVRTTDFTPS-CIGQSSCICLEIPRGVQLPKFAD 2856
            +K         E  + +YF +  DDQWVRTTDFT S CIGQSS +CLE+P  +QLP F +
Sbjct: 180  EKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFRE 239

Query: 2855 YFAWYKENENPFVLGTISSYSCSTVLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPKL 2676
             FA+YKE+E  FVL + SSYS +  LVPIV P  G++LPY ILFKI  LVQNGC+PGP L
Sbjct: 240  NFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPAL 299

Query: 2675 DANFFWLVNPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSISL 2496
            DANF+ LVNP   D  YI++ALE LY LKECC+EP +WL EQ+K  I  +K P SP ISL
Sbjct: 300  DANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVISL 359

Query: 2495 DEGLVYVRRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDLV 2316
            D+GLV VRRVQ+TP +VYFCGPE+NVSNRVLRH+ +DIDNFLR++F+DEE EK++STDL+
Sbjct: 360  DDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDLL 419

Query: 2315 PRSSSGDEKRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNAAD 2136
             R+     + T+IY RILS LK GIVIG+K+F+FLAFSSSQLRENS WMFASR GL AAD
Sbjct: 420  TRN-----RITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTAAD 474

Query: 2135 IRAWMGDFSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSDGI 1956
            IR WMG+FS IRNVAKYAARLGQSFSSSTETLSV +DEI++I D+E +     Y+FSDGI
Sbjct: 475  IRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFSDGI 534

Query: 1955 GKISAEFARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSDNT 1776
            GKISA+FA++VA+KC L   TPSAFQIR GGFKGVVA+DPTSS+KLSLR SM KY+S+NT
Sbjct: 535  GKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYESENT 594

Query: 1775 KLDVLAWSKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEALEL 1596
            KLDVLAWSKYQPCFLNRQLITLLSTLGV DHAFE+KQR+ V +L+ ILTDPL+AQEALEL
Sbjct: 595  KLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEALEL 654

Query: 1595 MSPGENTNILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGCLD 1416
            MSPGENTNILKEML CGY+PD+EPFLSMMLQTFRASKLL+LR K+RIF+ NGRSMMGCLD
Sbjct: 655  MSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGCLD 714

Query: 1415 ETNTLEYGEVFVQYSGAGRRKFCEDSQLFYENYSENAFILKGTVVVAKNPCLHPGDIRVL 1236
            ET TL+YG+VFVQ SG               + SE  FI++G VVVAKNPCLHPGD+RVL
Sbjct: 715  ETRTLDYGQVFVQVSG---------------SRSEQRFIVQGKVVVAKNPCLHPGDVRVL 759

Query: 1235 KAVNVPALQHMVDCVV----------------XXXXXIYFVCWDSDLIPPRQASPMDYTP 1104
             AVNVP L HMVDCVV                     IYFVCWD +LIP +Q  PMDY+P
Sbjct: 760  TAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYSP 819

Query: 1103 APTMQLDDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAKLFSI 924
            APT  L+ EVTIEE+EEYFTNYIVNDSLGIIANAHTV ADRE +KAMS  C  LAKLFSI
Sbjct: 820  APTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKLFSI 879

Query: 923  AVDFPKTGVPAEIPPHLRVKEYPDFMEKPDKPTYISENVIGKLFRGVRDKAPHTSSIESF 744
            AVDFPKTGVPAEIP  LRVKEYPDFMEKPDKPTY S NVIGKLFR V+D AP+   I S 
Sbjct: 880  AVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIRSL 939

Query: 743  TREVARRSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMS 564
            TRE   R YD D+EV G+EDY+D+AF +K+ YDYKLGNLM+YYGIKTEAEILSGGIMKMS
Sbjct: 940  TRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIMKMS 999

Query: 563  KSFDRRKDAEAVGMAVRSLRKEARSWFKRGG-----ELDDAYAKASAWYYVTYHHTYWGC 399
            +SF +++DAEA+G+AVRSLRKEARSWF   G     E DD YAKASAWY+VTYH +YWG 
Sbjct: 1000 RSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYHPSYWGL 1059

Query: 398  YNEGLNRDHYISFPWCVYDKLIHIKRKKLISGRNQQMSSLEWEFNHGLRL 249
            YNEG+NR+H++SFPWCVYDKLI IK KK+ S RN ++SSLE  F  GLRL
Sbjct: 1060 YNEGMNRNHFLSFPWCVYDKLILIK-KKVTSRRNSRLSSLESLFARGLRL 1108


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1460 bits (3780), Expect = 0.0
 Identities = 748/1130 (66%), Positives = 874/1130 (77%), Gaps = 30/1130 (2%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSKGGSRAYARVQFRDNRSAEV 3369
            MGKTIQV+GF   V A  V   LE YTG  ++YAL+++Q K   RA+A VQF  +  A +
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGL 60

Query: 3368 IISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKNA 3189
            II +A+ +RLYYG SYLKA EM+ D+VP+PR F+H ME + +NFGCQVS+ KF VLWK  
Sbjct: 61   IIRLAN-QRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKAD 119

Query: 3188 NVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRIF 3009
            NV++ FG G++K+ F LS     YKLEL  ENIWQI L  P  +T+  LLIQLFGAPRI+
Sbjct: 120  NVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIY 179

Query: 3008 KK--------LEASMFSYFEETQDDQWVRTTDFTPS-CIGQSSCICLEIPRGVQLPKFAD 2856
            +K         +  + +YF++  DDQWVRTTDFT S CIGQSS + LE+P  +QLP F +
Sbjct: 180  EKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFRE 239

Query: 2855 YFAWYKENENPFVLGTISSYSCSTVLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPKL 2676
             FA+YKENE   VL + SSYSC+  LVPIV P + ++LP+ ILFK+  LVQNGC+PGP L
Sbjct: 240  NFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPAL 299

Query: 2675 DANFFWLVNPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSISL 2496
            D  F+ LV+P      YI++ALE LY L+ECCYEP RWL E++K     +K   SP+ISL
Sbjct: 300  DDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISL 359

Query: 2495 DEGLVYVRRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDLV 2316
            DEGLVYVRRVQ+TP +VYFCGPE+NVSNRVLR +  DIDNFLR+SF+DEE EK++ST++ 
Sbjct: 360  DEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQ 419

Query: 2315 PRSSSGDEKRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNAAD 2136
             R      +RT IY RILS L+ GIVIGNK+F+FLAFSSSQLRENS WMFASR GL AAD
Sbjct: 420  ARG-----RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAAD 474

Query: 2135 IRAWMGDFSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSDGI 1956
            IR+WMG+FS IRNVAKYAARLGQSFSSSTETLSV +DEI +IPDIE      KY+FSDGI
Sbjct: 475  IRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDGI 534

Query: 1955 GKISAEFARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSDNT 1776
            GKISAEFA++VA+KC LK  TPSAFQIR GGFKGVVAIDPTSS KLSLRKSM KY+S+NT
Sbjct: 535  GKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENT 594

Query: 1775 KLDVLAWSKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEALEL 1596
            KLDVLAWSKYQPCFLNRQLITLLSTLGV D AFEKKQR+ V +L+ +LTDPL AQEALEL
Sbjct: 595  KLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALEL 654

Query: 1595 MSPGENTNILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGCLD 1416
            MSPGENTNILKEML CGYKPD+EPFLSMML+TFRASKLL+LR K RIF+  GRSMMGCLD
Sbjct: 655  MSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLD 714

Query: 1415 ETNTLEYGEVFVQYSGAGRRKFCEDSQLFYENYSENAFILKGTVVVAKNPCLHPGDIRVL 1236
            ET TL YG+VFVQ+SG               + SE  FI++G V+VAKNPCLHPGD+RVL
Sbjct: 715  ETRTLNYGQVFVQFSG---------------SRSERRFIVQGKVIVAKNPCLHPGDVRVL 759

Query: 1235 KAVNVPALQHMVDCVV----------------XXXXXIYFVCWDSDLIPPRQASPMDYTP 1104
            +AVNVP L HMVDCVV                     +YFVCWD +LIP +Q  PMDY+P
Sbjct: 760  RAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSP 819

Query: 1103 APTMQLDDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAKLFSI 924
            A T +LD EVTIEEIEEYFTNYIVNDSLGII+NAHT  ADRE  KAMS PCLELAKLFSI
Sbjct: 820  ASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLFSI 879

Query: 923  AVDFPKTGVPAEIPPHLRVKEYPDFMEKPDKPTYISENVIGKLFRGVRDKAPHTSSIESF 744
            AVDFPKTGVPAEIP  LRVKEYPDFMEKPDKP+Y S NVIGKLFR V++ AP+  SI+  
Sbjct: 880  AVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFL 939

Query: 743  TREVARRSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMS 564
            TRE  +R YD D+EV GFEDYID+AF +K++YDYKLGNLMDYYG+KTEAEIL GGIMKMS
Sbjct: 940  TREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMS 999

Query: 563  KSFDRRKDAEAVGMAVRSLRKEARSWFKRGG-----ELDDAYAKASAWYYVTYHHTYWGC 399
            +SF +++DAEA+ MAVRSLRKEARSWF   G     E+DDAYAKASAWYYVTYH +YWG 
Sbjct: 1000 RSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSYWGQ 1059

Query: 398  YNEGLNRDHYISFPWCVYDKLIHIKRKKLISGRNQQMSSLEWEFNHGLRL 249
            YNEG+NRDH++SFPWCVYDKLI IK++K        +SSLE  F  GL L
Sbjct: 1060 YNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1458 bits (3775), Expect = 0.0
 Identities = 745/1130 (65%), Positives = 873/1130 (77%), Gaps = 30/1130 (2%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSKGGSRAYARVQFRDNRSAEV 3369
            MGKTIQV+GF   V A  V   LE YTG  ++YAL+++Q K   RA+A VQF  +  A +
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGL 60

Query: 3368 IISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKNA 3189
            II +A+ +RLYYG SYLKA EM+ D+VP+PR F+H ME + +NF C VS+ KF VLWK  
Sbjct: 61   IIRLAN-QRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKAD 119

Query: 3188 NVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRIF 3009
            NV++ FG G++K+ F LS     YKLEL  ENIWQI L  P  +T+  LLIQLFGAPRI+
Sbjct: 120  NVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIY 179

Query: 3008 KK--------LEASMFSYFEETQDDQWVRTTDFTPS-CIGQSSCICLEIPRGVQLPKFAD 2856
            +K         +  + +YF++  DDQWVRTTDFT S CIGQSS +CLE+P  +QLP F +
Sbjct: 180  EKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFRE 239

Query: 2855 YFAWYKENENPFVLGTISSYSCSTVLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPKL 2676
             FA+YKENE   VL + SSYSC+  LVPIV P + ++LP+ ILFK+  LVQNGC+PGP L
Sbjct: 240  NFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPAL 299

Query: 2675 DANFFWLVNPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSISL 2496
            D  F+ LV+P      YI++ALE LY L+ECCYEP RWL E++K     +K   SP+ISL
Sbjct: 300  DDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISL 359

Query: 2495 DEGLVYVRRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDLV 2316
            DEGLVYVRRVQ+TP +VYFCGPE+NVSNRVLR +  DIDNFLR+SF+DEE EK++ST++ 
Sbjct: 360  DEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQ 419

Query: 2315 PRSSSGDEKRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNAAD 2136
             R      +RT IY RILS L+ GIVIGNK+F+FLAFSSSQLRENS WMFASR GL AAD
Sbjct: 420  ARG-----RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAAD 474

Query: 2135 IRAWMGDFSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSDGI 1956
            IR+WMG+FS IRNVAKYAARLGQSFSSSTETLSV +DEI +IPDIE      KY+F DGI
Sbjct: 475  IRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPDGI 534

Query: 1955 GKISAEFARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSDNT 1776
            GKISAEFA++VA+KC LK  TPSAFQIR GGFKGVVAIDPTSS KLSLRKSM KY+S+NT
Sbjct: 535  GKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENT 594

Query: 1775 KLDVLAWSKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEALEL 1596
            KLDVLAWSKYQPCFLNRQLITLLSTLGV D+AFEKKQR+ V +L+ +LTDPL AQEALEL
Sbjct: 595  KLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEALEL 654

Query: 1595 MSPGENTNILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGCLD 1416
            MSPGENTNILKEML CGYKPD+EPFLSMML+TFRASKLL+LR K RIF+  GRSMMGCLD
Sbjct: 655  MSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLD 714

Query: 1415 ETNTLEYGEVFVQYSGAGRRKFCEDSQLFYENYSENAFILKGTVVVAKNPCLHPGDIRVL 1236
            ET TL YG+VFVQ+SG               + SE  FI++G V+VAKNPCLHPGD+RVL
Sbjct: 715  ETRTLNYGQVFVQFSG---------------SRSERRFIVQGKVIVAKNPCLHPGDVRVL 759

Query: 1235 KAVNVPALQHMVDCVV----------------XXXXXIYFVCWDSDLIPPRQASPMDYTP 1104
            +AVNVP L HMVDCVV                     +YFVCWD +LIP +Q  PMDY+P
Sbjct: 760  RAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSP 819

Query: 1103 APTMQLDDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAKLFSI 924
            A T +LD EVTIEEIEEYFTNYIVNDSLGII+NAHT  ADRE  KAMS PCLELAKLFSI
Sbjct: 820  ASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKLFSI 879

Query: 923  AVDFPKTGVPAEIPPHLRVKEYPDFMEKPDKPTYISENVIGKLFRGVRDKAPHTSSIESF 744
            AVDFPKTGVPAEIP  LRVKE+PDFMEKPDKP+Y S NVIGKLFR V++ AP+  SI+  
Sbjct: 880  AVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLL 939

Query: 743  TREVARRSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMS 564
            TRE  +R YD D+EV GF DYID+AF YK++YDYKLGNLMDYYG+KTEAEILSGGIMKMS
Sbjct: 940  TREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMS 999

Query: 563  KSFDRRKDAEAVGMAVRSLRKEARSWFKRGG-----ELDDAYAKASAWYYVTYHHTYWGC 399
            +SF +++DAE++ MAVRSLRKEARSWF   G     E+DDAYAKASAWYYVTYHH+YWG 
Sbjct: 1000 RSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHSYWGQ 1059

Query: 398  YNEGLNRDHYISFPWCVYDKLIHIKRKKLISGRNQQMSSLEWEFNHGLRL 249
            YNEG+NRDH++SFPWCVYDKLI IK++K        +SSLE  F  G  L
Sbjct: 1060 YNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHL 1109


>gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
          Length = 1137

 Score = 1450 bits (3753), Expect = 0.0
 Identities = 747/1125 (66%), Positives = 874/1125 (77%), Gaps = 20/1125 (1%)
 Frame = -2

Query: 3563 LIFCPMGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSKGGSRAYARVQFRDN 3384
            L F  MGKTIQV+GFP L+ AE V + LEK+TG G++ ALEVKQSKGGSRA+A+VQF DN
Sbjct: 66   LEFGYMGKTIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDN 125

Query: 3383 RSAEVIISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGV 3204
             SA+ II++AS +RLY+GSSYLKAWE++ D+V +  A+V  M+ + LNFGCQ+SD+KF V
Sbjct: 126  ISADKIINLAS-KRLYFGSSYLKAWELETDIV-QLWAYVDHMDGITLNFGCQISDDKFAV 183

Query: 3203 LWKNANVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFG 3024
            L                                      ++VLHRP  + A FLLIQLFG
Sbjct: 184  LGST-----------------------------------EVVLHRPYGQNAQFLLIQLFG 208

Query: 3023 APRIFKKLEASMFSYFEETQDDQWVRTTDFTPSCIGQSSCICLEIPRGVQLPKFADYFAW 2844
            APRI+K+LE S +S+F+ET DDQWVRTTDFTPS IG SS +CL+  RGV LP F + F  
Sbjct: 209  APRIYKRLENSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRRGVHLPNFQESFFH 268

Query: 2843 YKENENPFVLGTISSYSCS--TVLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPKLDA 2670
            Y E EN   L T  ++  S  + LVP V+PP+G+ +PY ILFKI  LVQ+GC+PGP L+ 
Sbjct: 269  YAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNV 328

Query: 2669 NFFWLVNPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSISLDE 2490
             FF LV+PQ R++  IE ALE LY LKECCY+PVRWLTEQ+      ++ PKSPSI+LD+
Sbjct: 329  YFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYFKGRQPPKSPSITLDD 388

Query: 2489 GLVYVRRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDLVPR 2310
            GLVYVRRV VTPCKVYFCGPEVNVSNRVLR+YSEDIDNFLRVSF+DEEWEK+YST+L+P+
Sbjct: 389  GLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPK 448

Query: 2309 SSSGDEKRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNAADIR 2130
            +S+G+  RT IY RILS L++G VIG+KKF+FLAFSSSQLR+NSVWMFASR GL A DIR
Sbjct: 449  ASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTANDIR 508

Query: 2129 AWMGDFSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSDGIGK 1950
            +WMGDFS I+NVAKYAAR GQSF SS ETLSV R EI++IPD++  G S  Y+FSDGIGK
Sbjct: 509  SWMGDFSQIKNVAKYAARFGQSFGSSRETLSVLRHEIEVIPDVKVHGTS--YVFSDGIGK 566

Query: 1949 ISAEFARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSDNTKL 1770
            ISA+FAR+VAS CGL ++TPSAFQIRYGG+KGVVA+DP SS KLSLRKSM KY+SDN KL
Sbjct: 567  ISADFARKVASNCGL-QYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKL 625

Query: 1769 DVLAWSKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEALELMS 1590
            DVL WSKYQPC+LNRQL+TLLSTLGVKD   E+KQ++AV +LD IL D L+AQEALELMS
Sbjct: 626  DVLEWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMS 685

Query: 1589 PGENTNILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGCLDET 1410
            PGENTNILK MLNCGY PD+EPFLSMMLQTFRASKLLDLR K+RIFIPNGR+MMGCLDE+
Sbjct: 686  PGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDES 745

Query: 1409 NTLEYGEVFVQYSGAGRRKFCEDSQLFYENYSENA-FILKGTVVVAKNPCLHPGDIRVLK 1233
             TLEYG+VFVQ++GAG R+F ED   F  + S N  FILKG VVVAKNPCLHPGDIRVL+
Sbjct: 746  RTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLR 805

Query: 1232 AVNVPALQHMVDCVV----------------XXXXXIYFVCWDSDLIPPRQASPMDYTPA 1101
            AV+VPAL HMVDCVV                     IYFVCWD D+IPPRQ   M++ P 
Sbjct: 806  AVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEFPPP 865

Query: 1100 PTMQLDDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAKLFSIA 921
            P++QLD +VTIEE+EEYFTNYIVND LGIIANAH V ADRE   AM              
Sbjct: 866  PSIQLDHDVTIEEVEEYFTNYIVNDGLGIIANAHVVFADREPDMAM-------------- 911

Query: 920  VDFPKTGVPAEIPPHLRVKEYPDFMEK-PDKPTYISENVIGKLFRGVRDKAPHTSSIESF 744
            +DFPKTGVPAEIP  LR KEYPDFM+K PDK TYISE VIGKLFR V+DKAP  SSI  F
Sbjct: 912  MDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIF 971

Query: 743  TREVARRSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMS 564
            TR+ ARRSYDTDLEV GFEDYIDEAF+YKTEYD KLGNLMDYYGIKTEAEILSGGIMK S
Sbjct: 972  TRDDARRSYDTDLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTS 1031

Query: 563  KSFDRRKDAEAVGMAVRSLRKEARSWFKRGGELDDAYAKASAWYYVTYHHTYWGCYNEGL 384
            K+FDRRKDAEA+ +AVR+LRKEAR+WFKR  ++DD   KASAWY+VTYH TYWGCYN+GL
Sbjct: 1032 KTFDRRKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGL 1091

Query: 383  NRDHYISFPWCVYDKLIHIKRKKLISGRNQQMSSLEWEFNHGLRL 249
             RDH+ISFPWCVYD+LI IK++K  +     +SSL  + +  L L
Sbjct: 1092 KRDHFISFPWCVYDQLIQIKKEKARNRPVLNLSSLRDQLSRKLVL 1136


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score = 1415 bits (3663), Expect = 0.0
 Identities = 719/1133 (63%), Positives = 874/1133 (77%), Gaps = 33/1133 (2%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSK-GGSRAYARVQFRDNRSAE 3372
            MGKTIQ+ GFP  V AE+V   LE +TG G++YA++++ +K GGSR+YA VQF    +AE
Sbjct: 1    MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGSRSYAIVQFMTVETAE 60

Query: 3371 VIISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKN 3192
            +II +A+ R L+YG SYL A  M+ D+VP+PRA ++ ++ + L+FGCQ+S  KF  LW+ 
Sbjct: 61   LIIRLANPR-LWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRV 119

Query: 3191 ANVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRI 3012
             NVSV FG+GL+++ FYL+   V+Y+L+LL EN+WQI LHRPR +TA +LLIQL GAPR+
Sbjct: 120  GNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRV 179

Query: 3011 FKK--------LEASMFSYFEETQDDQWVRTTDFTPSC-IGQSSCICLEIPRGVQLPKFA 2859
            ++K        LE  +F+YF++T DDQWVR TDFT SC IG SS + LE+P GV LP   
Sbjct: 180  YEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDLR 239

Query: 2858 DYFAWYKENENPFVLGTISSYSCSTVLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPK 2679
            + F +YKE+E  F+L + SS+S +  LVPIV PP G+ LP+  +FKI  L+QNGCL GP 
Sbjct: 240  ENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGPT 299

Query: 2678 LDANFFWLVNPQN-RDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSI 2502
            LD +F+ LV+PQ  R++  I  ALE L+ LKEC YEP  WL EQ++K +   + PK P+I
Sbjct: 300  LDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPAI 359

Query: 2501 SLDEGLVYVRRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTD 2322
            +LD GLVYVRRVQVTP KVYFCGPE+NVSNRVLR Y + ID FLRVSF+DEE EK++STD
Sbjct: 360  ALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFSTD 419

Query: 2321 LVPRSSSGDE-KRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLN 2145
            L PR+S+ +E +RT IY RILSVL+ GI IG++KF+FLAFSSSQLR+NS+WMFA+  G +
Sbjct: 420  LSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGHS 479

Query: 2144 AADIRAWMGDFSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFS 1965
            A  IR W+GDF  IRNVAKYAARLGQSF SSTETL+V   E ++I DIE    + KY+FS
Sbjct: 480  ADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYVFS 539

Query: 1964 DGIGKISAEFARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDS 1785
            DGIGKIS+ FA+RVA KCGLK   PSAFQIRY G+KGVVA+DPTSS KLSLRKSM KY+S
Sbjct: 540  DGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKYES 599

Query: 1784 DNTKLDVLAWSKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEA 1605
            +  KLDVLA+SK Q C+LNRQLITLLSTLGV D  FEKKQR+AV +L+ IL DPLRA+EA
Sbjct: 600  ELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRAREA 659

Query: 1604 LELMSPGENTNILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMG 1425
            L+LMS GE TNILKE+L+CGY+P++EPFLSMMLQ FRASKL +LR KTRI IP+GR+MMG
Sbjct: 660  LDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMMG 719

Query: 1424 CLDETNTLEYGEVFVQYSGAGRRKFCEDSQLFYENYSENAFILKGTVVVAKNPCLHPGDI 1245
            CLDE  TLEYGEVFVQ+SG   R F EDS +     S   +I+ G VVVAKNPCLHPGD+
Sbjct: 720  CLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTGSGQNYIVVGRVVVAKNPCLHPGDV 779

Query: 1244 RVLKAVNVPALQHMVDCVV----------------XXXXXIYFVCWDSDLIPPRQASPMD 1113
            RVL+AVNVPAL HMVDCVV                     IYFVCWD +LIP +Q  PMD
Sbjct: 780  RVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFEPMD 839

Query: 1112 YTPAPTMQLDDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAKL 933
            Y+PAPT +LD +V IEE++EYFTNYIVNDSLGIIANAHT  AD+E  KAMS  C+ELA+L
Sbjct: 840  YSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIELARL 899

Query: 932  FSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKPDKPTYISENVIGKLFRGVRDKAPHTSSI 753
            FSIAVDFPKTGVPA IP  L VKEYPDFMEK +KPTY S+NVIGKLFR V+D AP+  S+
Sbjct: 900  FSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVGSL 959

Query: 752  ESFTREVARRSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIM 573
              FT+EVA RSYD D+E  GFEDYID+AF YK+ YDYKLGNL+DYYGIK+EAEI+ G IM
Sbjct: 960  HFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGGSIM 1019

Query: 572  KMSKSFDRRKDAEAVGMAVRSLRKEARSWFKRGGE-----LDDAYAKASAWYYVTYHHTY 408
            +MSKSF +R+DAE++ MAVR+LRKEAR+WF   G       DD YAKASAWYYVTYHH+Y
Sbjct: 1020 RMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLDSAADDVYAKASAWYYVTYHHSY 1079

Query: 407  WGCYNEGLNRDHYISFPWCVYDKLIHIKRKKLISGRNQQMSSLEWEFNHGLRL 249
            WGCYNEG+NRDHY+SFPWCVYDKL+ IKR K    R+ QMSSLE  F+  L L
Sbjct: 1080 WGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLHL 1132


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score = 1400 bits (3625), Expect = 0.0
 Identities = 714/1122 (63%), Positives = 863/1122 (76%), Gaps = 31/1122 (2%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSK-GGSRAYARVQFRDNRSAE 3372
            MGKTIQVFGFP  V  + V   LE+ TG+G++YA++V+Q K GG R +A VQF   R A 
Sbjct: 1    MGKTIQVFGFPVGVNTDDVKIFLERLTGSGTVYAIKVRQPKRGGPRVFAIVQFTSERHAR 60

Query: 3371 VIISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKN 3192
            +II+MA+  RLYYG SYLKA+EM+ D+VP+PRA +H +  L + FGCQVS  K   LW  
Sbjct: 61   LIITMAA-ERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLWSA 119

Query: 3191 ANVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRI 3012
             NV V FG G++K++F +S  + DY+LEL  ENIWQI LH P+  ++ FL+IQ+ GAP+I
Sbjct: 120  HNVCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSKFLVIQVIGAPKI 179

Query: 3011 FKKLEA------SMFSYFEETQDDQWVRTTDFTPS-CIGQSSCICLEIPRGVQLPKFADY 2853
            F+K +        M  ++ +  D+QW+RTTDFT S CIGQS+  CLE+P  V +P F + 
Sbjct: 180  FEKEDQPVNFLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVPDFREN 239

Query: 2852 FAWYKENE-NPFVLGTISSYSCST-VLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPK 2679
            FA Y E+  + F++ + SSYS +   LVP+V PP G +LP+ ILFK+  LVQN CLPGP 
Sbjct: 240  FANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPPGFDLPFEILFKVNTLVQNACLPGPA 299

Query: 2678 LDANFFWLVNPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSIS 2499
            LD  F+ L+NP+  D   I+++LE L+ L ECCYEP RWL E++KK  + +K+P SP+IS
Sbjct: 300  LDLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARWLREEYKKLNSSKKLPLSPTIS 359

Query: 2498 LDEGLVYVRRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDL 2319
            LD+GLVY+ RV VTP +VYF GPEVNVSNRVLRHYSE I+NFLR+SF+DE+ EK++S DL
Sbjct: 360  LDDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLEKIHSMDL 419

Query: 2318 VPRSSSGDEKRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNAA 2139
             PRSS+  ++RTK+Y RI SVL++GIVIG+KKF+FLAFSSSQLRENS WMFA R  L AA
Sbjct: 420  SPRSST--QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPRDRLTAA 477

Query: 2138 DIRAWMGDFSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSDG 1959
             IRAWMGDF  IRNVAKYAARLGQSFSSS ETL+VR DEI++IPD+E      +Y+FSDG
Sbjct: 478  HIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEAMYLDTRYVFSDG 537

Query: 1958 IGKISAEFARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSDN 1779
            IGKISAEFAR+VA KCGL +F+PSAFQIRYGG+KGVVA+DP SS+KLSLRKSM K++S N
Sbjct: 538  IGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESGN 597

Query: 1778 TKLDVLAWSKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEALE 1599
            TKLDVLAWSKYQPC+LNRQ+ITLLSTLGVKD+ FEKKQR+ V  LD ILTDPL A EAL 
Sbjct: 598  TKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDPLEAHEALG 657

Query: 1598 LMSPGENTNILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGCL 1419
            LM+PGENTNILK++L CGYKPD+EPFLSMMLQ FRASKLL+LR KTRIFIP GRSMMGCL
Sbjct: 658  LMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPGGRSMMGCL 717

Query: 1418 DETNTLEYGEVFVQYSG---AGRRKFCEDSQLFYENYSENAFILKGTVVVAKNPCLHPGD 1248
            DET TLEYG+V VQYS     G+R                 +I+ G VVVAKNPCLHPGD
Sbjct: 718  DETRTLEYGQVVVQYSNPTMPGKR-----------------YIITGPVVVAKNPCLHPGD 760

Query: 1247 IRVLKAVNVPALQHMVDCVV----------------XXXXXIYFVCWDSDLIPPRQASPM 1116
            +RVL+AVNVPAL HMVDCVV                     IYF+CWD +LIPPR + PM
Sbjct: 761  VRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWDHELIPPRTSEPM 820

Query: 1115 DYTPAPTMQLDDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAK 936
            DYTP P   LD +VTIEE+EEYF NYIVNDSLGIIANAHT  AD+E  KA SDPC+ELA+
Sbjct: 821  DYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAR 880

Query: 935  LFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKPDKPTYISENVIGKLFRGVRDKAPHTSS 756
             FSIAVDFPKTG+ AEIP HL VKEYPDFM+KPDKPTY S+NVIGKLFR V+++AP   S
Sbjct: 881  KFSIAVDFPKTGIAAEIPQHLYVKEYPDFMDKPDKPTYESKNVIGKLFREVKERAPPLIS 940

Query: 755  IESFTREVARRSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGI 576
            I SFT +VA +SYD D+EV GFE+YIDEAF +K  YDY+LGNLMDYYGIKTEAEILSGGI
Sbjct: 941  IRSFTLDVALKSYDKDMEVEGFEEYIDEAFFHKGNYDYRLGNLMDYYGIKTEAEILSGGI 1000

Query: 575  MKMSKSFDRRKDAEAVGMAVRSLRKEARSWFKRGGELD--DAYAKASAWYYVTYHHTYWG 402
            M+MSKSF +R+DAE++G AVR+LRKEA SWF    + +  D  AKASAWY+VTYH +YWG
Sbjct: 1001 MRMSKSFTKRRDAESIGRAVRALRKEALSWFNNAEDKNDFDESAKASAWYHVTYHSSYWG 1060

Query: 401  CYNEGLNRDHYISFPWCVYDKLIHIKRKKLISGRNQQMSSLE 276
             YNEGLNRDH++SF WCVYDKL+ IK+  +  GR Q+  +LE
Sbjct: 1061 VYNEGLNRDHFLSFAWCVYDKLVRIKKANV--GRRQRQEALE 1100


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score = 1394 bits (3609), Expect = 0.0
 Identities = 718/1129 (63%), Positives = 864/1129 (76%), Gaps = 29/1129 (2%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQ-SKGGSRAYARVQFRDNRSAE 3372
            MGKTIQVFGFP  V AE V   LE+ TG+G++YA++V+Q  KGG R +A VQF + R A 
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNERYAR 60

Query: 3371 VIISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKN 3192
             II+ A+ RRLYYG SYL A+E+D D+VP+PRA +H +  L + FGCQVS  KF  LW  
Sbjct: 61   QIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLWSA 120

Query: 3191 ANVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRI 3012
             +V V FGIG++K++F  S  + DY+LEL  ENIWQI LH P+ R++ FL+IQ+ GAP+I
Sbjct: 121  QDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKI 180

Query: 3011 FKK------LEASMFSYFEETQDDQWVRTTDFTPS-CIGQSSCICLEIPRGVQLPKFADY 2853
            F+K      L   M  ++ +  D+QW+RTTDFT S CIGQS+  CLE+P  + +P F + 
Sbjct: 181  FEKEDQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFREN 240

Query: 2852 FAWYKENE-NPFVLGTISSYSCST-VLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPK 2679
            FA Y E+  +PF++ + SSYS +   LVP+V PP G +LP+ ILFK+  LVQN CLPGP 
Sbjct: 241  FANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACLPGPA 300

Query: 2678 LDANFFWLVNPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSIS 2499
            LD + + L+NP+  +   I++ LE L+ L E CYEP RWL +Q+K+  +  K+P SP+IS
Sbjct: 301  LDLDVYQLLNPKKYNRALIDHCLEKLFHLGESCYEPARWLRKQYKELSSKGKLPLSPTIS 360

Query: 2498 LDEGLVYVRRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDL 2319
            LD+GLVY+ RVQVTP +VYF GPEVNVSNRVLRHYS+ I+NFLRVSF+DE+ EK+ S DL
Sbjct: 361  LDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDL 420

Query: 2318 VPRSSSGDEKRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNAA 2139
             PRSS+  ++RTK+Y RI SVL++GIVIG+KKF+FLAFSSSQLRENS WMFA   GL +A
Sbjct: 421  SPRSST--QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDGLTSA 478

Query: 2138 DIRAWMGDFSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSDG 1959
             IRAWMGDF  IRNVAKYAARLGQSFSSS ETL+VR DEI++IPD+E      +Y+FSDG
Sbjct: 479  HIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDG 538

Query: 1958 IGKISAEFARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSDN 1779
            IGKISAEFARRVA KCGL +F+PSAFQIRYGG+KGVVA+DP SS+KLSLRKSM K++S+N
Sbjct: 539  IGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESEN 598

Query: 1778 TKLDVLAWSKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEALE 1599
            TKLDVLAWSKYQPC++NRQLITLLSTLGVKD  F+KKQR+ V  LD ILTDPL A EAL 
Sbjct: 599  TKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDAILTDPLEAHEALG 658

Query: 1598 LMSPGENTNILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGCL 1419
            LM+PGENTNILK ++ CGYKPD+EPFLSMMLQ FRASKLL+LR KTRIFI  GRSMMGCL
Sbjct: 659  LMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCL 718

Query: 1418 DETNTLEYGEVFVQYSG---AGRRKFCEDSQLFYENYSENAFILKGTVVVAKNPCLHPGD 1248
            DET TLEYG+V VQYS     GRR                 FI+ G VVVAKNPCLHPGD
Sbjct: 719  DETRTLEYGQVVVQYSDPMRPGRR-----------------FIITGPVVVAKNPCLHPGD 761

Query: 1247 IRVLKAVNVPALQHMVDCVV----------------XXXXXIYFVCWDSDLIPPRQASPM 1116
            +RVL+AVNVPAL HMVDCVV                     IYFVCWD +LIPPR + PM
Sbjct: 762  VRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEPM 821

Query: 1115 DYTPAPTMQLDDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAK 936
            DYTP P   LD +VTIEE+EEYF NYIVNDSLGIIANAHT  AD+E  KA SDPC+ELA+
Sbjct: 822  DYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAR 881

Query: 935  LFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKPDKPTYISENVIGKLFRGVRDKAPHTSS 756
             FS+AVDFPKTGV AEIP HL VKEYPDFMEKPDKPTY S+NVIGKLFR V+++AP   S
Sbjct: 882  KFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLIS 941

Query: 755  IESFTREVARRSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGI 576
            I+SFT +VA +SYD D+EV GFE+Y+DEAF YK  YD+KLGNLMDYYGIKTEAEILSGGI
Sbjct: 942  IKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTEAEILSGGI 1001

Query: 575  MKMSKSFDRRKDAEAVGMAVRSLRKEARSWFKRGGELDDAYAKASAWYYVTYHHTYWGCY 396
            M+MSKSF +R+DAE++G AVR+LRKE  S F    E +++ AKASAWY+VTYH +YWG Y
Sbjct: 1002 MRMSKSFTKRRDAESIGRAVRALRKETLSLFNATEEENES-AKASAWYHVTYHSSYWGLY 1060

Query: 395  NEGLNRDHYISFPWCVYDKLIHIKRKKLISGRNQQMSSLEWEFNHGLRL 249
            NEGLNRDH++ F WCVYDKL+ I  KK  +GR Q+  +LE    H LRL
Sbjct: 1061 NEGLNRDHFLIFAWCVYDKLVRI--KKTNAGRRQRQETLE-RLGHVLRL 1106


>gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlisea aurea]
          Length = 1095

 Score = 1389 bits (3596), Expect = 0.0
 Identities = 705/1106 (63%), Positives = 856/1106 (77%), Gaps = 17/1106 (1%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQSKGGSRAYARVQFRDNRSAEV 3369
            MG T+ +FGFP  VPA++V  L+E+YTG G++ AL+V+ SK G RAYA VQF D RSAE+
Sbjct: 1    MGLTVMIFGFPSRVPADSVKQLVERYTGQGTVVALKVEASKSGPRAYAVVQFLDARSAEM 60

Query: 3368 IISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKNA 3189
            I+   +   LYYGSSYLK    D ++V  P   +  ++ + L+FGCQ+S NKF VLW  +
Sbjct: 61   IVHAQNS--LYYGSSYLKVRYSDKELVRNPATNLQLIDQVTLHFGCQISGNKFSVLWSCS 118

Query: 3188 NVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRIF 3009
            +V+VKFG  LK I F L     +Y L+L  ++IW+ VL+ P       LLIQLFGAPRI 
Sbjct: 119  DVTVKFGTQLKTISFILFDGLYNYMLQLSYKSIWKTVLYNPSSGRRK-LLIQLFGAPRIS 177

Query: 3008 KKLEASMFSYFEETQDDQWVRTTDFTPSC-IGQSSCICLEIPRGVQLPKFADYFAWYKEN 2832
            KK+E S +SY+    +DQWVRTTDFT +  IGQSS +CLE P G +LP+F D F ++KE 
Sbjct: 178  KKVEGSPYSYYNVYTEDQWVRTTDFTRAALIGQSSGLCLEFPHGSRLPRFRDDFVYFKEK 237

Query: 2831 ENPFVLGTISSYSCSTVLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPKLDANFFWLV 2652
            E  F L    S+S ++VL PIV PP+GL LPY I+FKIC LVQ GC+PGP+LDANF+ +V
Sbjct: 238  EEEFHLQEGYSFSQNSVLAPIVGPPRGLSLPYNIVFKICSLVQMGCIPGPELDANFYRMV 297

Query: 2651 NPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSISLDEGLVYVR 2472
            NPQ  DIRYIE+ALE ++ LKECCY+PV+WL  Q+++    +  P SP+ISL+ GLVYVR
Sbjct: 298  NPQLVDIRYIEHALEKIFYLKECCYDPVKWLESQYRRYQTSK--PSSPTISLEGGLVYVR 355

Query: 2471 RVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDLVPRSSSGDE 2292
            RVQ+TP +VYF GPE+NVSNRVLR Y + ID+FLRVSF+DE+W+K++S  L  ++  G  
Sbjct: 356  RVQITPSRVYFTGPEINVSNRVLRQYKDRIDDFLRVSFVDEDWDKLFSLTLSSKTEIG-- 413

Query: 2291 KRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNAADIRAWMGDF 2112
             +T+IY RILSVL+EGI IG+K+FDFLAFSSSQLRENS+WMFA   G+ A DIR WMGDF
Sbjct: 414  -KTRIYERILSVLREGIRIGDKRFDFLAFSSSQLRENSLWMFAPSNGVTADDIRKWMGDF 472

Query: 2111 SGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSDGIGKISAEFA 1932
              IRNVAKYAARLGQSF SSTETL+V+RDE  +IPDI R+   + Y FSDGIGKISA+FA
Sbjct: 473  RSIRNVAKYAARLGQSFGSSTETLTVQRDEYLLIPDITRQTGDKTYTFSDGIGKISADFA 532

Query: 1931 RRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSDNTKLDVLAWS 1752
            RRVA+KC      PSAFQIRYGGFKGVVA+DP+S+ KLSLR SM KY+SDNTKLDVL+WS
Sbjct: 533  RRVAAKCRFTHRVPSAFQIRYGGFKGVVAVDPSSNMKLSLRPSMKKYESDNTKLDVLSWS 592

Query: 1751 KYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEALELMSPGENTN 1572
            KY PCFLNRQ+ITLLSTLGV+D  F KKQR+AVA+LDEIL DPLRAQE L+LM+PGEN++
Sbjct: 593  KYLPCFLNRQIITLLSTLGVEDRVFLKKQREAVAQLDEILVDPLRAQEVLDLMAPGENSH 652

Query: 1571 ILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGCLDETNTLEYG 1392
            ILKEML CGYKPD EPFLSMML+ FR+SKLLDLR K+RIF+P  R +MGCLDET TLEYG
Sbjct: 653  ILKEMLKCGYKPDEEPFLSMMLRAFRSSKLLDLRTKSRIFVPEARQLMGCLDETGTLEYG 712

Query: 1391 EVFVQYSGAGRRKFCEDSQLFYENYSENAFILKGTVVVAKNPCLHPGDIRVLKAVNVPAL 1212
            EVFVQ SG+ +R+F  D          N+ ++ GTV VAKNPCLHPGDIRV+KAV+VP L
Sbjct: 713  EVFVQISGSRQRQFFFDGPAVGTVNDYNS-VVSGTVFVAKNPCLHPGDIRVVKAVDVPIL 771

Query: 1211 QHMVDCVV----------------XXXXXIYFVCWDSDLIPPRQASPMDYTPAPTMQLDD 1080
             HMVDC+V                     IYFVCWD+DL P +Q  PMDY PAPT +LD 
Sbjct: 772  HHMVDCLVFPQKGHRPLPDECSGSDLDGDIYFVCWDTDLFPLQQDPPMDYDPAPTTRLDH 831

Query: 1079 EVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAKLFSIAVDFPKTG 900
            +VT++E+++YFT+YIVND+LG+IANAHT  ADRE  KA S PCLELAKLFS+AVDFPKTG
Sbjct: 832  DVTMQEVQKYFTDYIVNDTLGVIANAHTAFADRERAKARSPPCLELAKLFSVAVDFPKTG 891

Query: 899  VPAEIPPHLRVKEYPDFMEKPDKPTYISENVIGKLFRGVRDKAPHTSSIESFTREVARRS 720
            VPA IP +LRVKE+PDFMEK D+ +Y SENV+GKL+R VRD  P   SI +FTR+VA RS
Sbjct: 892  VPANIPYNLRVKEFPDFMEKSDRVSYQSENVLGKLYREVRDIEP--LSITAFTRDVAERS 949

Query: 719  YDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGIMKMSKSFDRRKD 540
            YD DLE+PG+EDY++EA  YK EYDYKLGNLMDYYG+KTEAE+L+GGI+KMSK+FDRRKD
Sbjct: 950  YDPDLEIPGYEDYVEEAHSYKDEYDYKLGNLMDYYGVKTEAEMLTGGILKMSKTFDRRKD 1009

Query: 539  AEAVGMAVRSLRKEARSWFKRGGELDDAYAKASAWYYVTYHHTYWGCYNEGLNRDHYISF 360
            AEAV  AVR+LR EARSWF+   E DDAYAKASAWY+VTYH  YWGCYNEGL RDH+ISF
Sbjct: 1010 AEAVADAVRALRNEARSWFR--AEDDDAYAKASAWYHVTYHPDYWGCYNEGLRRDHFISF 1067

Query: 359  PWCVYDKLIHIKRKKLISGRNQQMSS 282
            PWCV+DKLI IKR    S R+Q ++S
Sbjct: 1068 PWCVHDKLIKIKRD---SVRSQGLAS 1090


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score = 1386 bits (3588), Expect = 0.0
 Identities = 714/1129 (63%), Positives = 862/1129 (76%), Gaps = 29/1129 (2%)
 Frame = -2

Query: 3548 MGKTIQVFGFPFLVPAEAVINLLEKYTGNGSIYALEVKQ-SKGGSRAYARVQFRDNRSAE 3372
            MGKTIQVFGFP  V AE V   LE+ TG+G++YA++V+Q  KGG R +A VQF +   A 
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNEIYAR 60

Query: 3371 VIISMASGRRLYYGSSYLKAWEMDLDMVPRPRAFVHQMECLVLNFGCQVSDNKFGVLWKN 3192
             II+ A+ RRLYYG SYL A+E++ D+VP+PRA +H +  L + FGCQVS      LW  
Sbjct: 61   QIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLWSA 120

Query: 3191 ANVSVKFGIGLKKIYFYLSVARVDYKLELLNENIWQIVLHRPRDRTANFLLIQLFGAPRI 3012
             +VSV FGIG++K++F  S  + DY+LEL  ENIWQI LH P+ R++ FL+IQ+ GAP+I
Sbjct: 121  QDVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKI 180

Query: 3011 FKK------LEASMFSYFEETQDDQWVRTTDFTPS-CIGQSSCICLEIPRGVQLPKFADY 2853
            F+K      L   M  ++ +  D+QW+RTTDFT S CIGQS+  CLE+P  + +P F + 
Sbjct: 181  FEKEDQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFREN 240

Query: 2852 FAWYKENE-NPFVLGTISSYSCST-VLVPIVRPPQGLELPYGILFKICCLVQNGCLPGPK 2679
            FA Y E+  + +++ + SSYS +   LVP+V PP G +LP+ ILFK+  LVQN CLPGP 
Sbjct: 241  FANYAEHRASTYLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACLPGPA 300

Query: 2678 LDANFFWLVNPQNRDIRYIENALETLYVLKECCYEPVRWLTEQFKKDINLQKVPKSPSIS 2499
            LD + + L+NP+  D   I++ LE L+ L E CYEP RWL +Q+K+  +  K+P SP+IS
Sbjct: 301  LDLDVYQLLNPKKIDRALIDHCLEKLFYLGESCYEPARWLRKQYKELSSKGKLPLSPTIS 360

Query: 2498 LDEGLVYVRRVQVTPCKVYFCGPEVNVSNRVLRHYSEDIDNFLRVSFIDEEWEKMYSTDL 2319
            LD+GLVY+ RVQVTP +VYF GPEVNVSNRVLRHYS+ I+NFLRVSF+DE+ EK+ S DL
Sbjct: 361  LDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDL 420

Query: 2318 VPRSSSGDEKRTKIYHRILSVLKEGIVIGNKKFDFLAFSSSQLRENSVWMFASRPGLNAA 2139
             PRSS+  ++RTK+Y RI SVL++GIVIG+KKF+FLAFSSSQLRENS WMFA   GL +A
Sbjct: 421  SPRSST--QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIEGLTSA 478

Query: 2138 DIRAWMGDFSGIRNVAKYAARLGQSFSSSTETLSVRRDEIKMIPDIERRGASEKYIFSDG 1959
             IRAWMGDF  IRNVAKYAARLGQSFSSS ETL+VR DEI++IPD+E      +Y+FSDG
Sbjct: 479  HIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDG 538

Query: 1958 IGKISAEFARRVASKCGLKKFTPSAFQIRYGGFKGVVAIDPTSSRKLSLRKSMMKYDSDN 1779
            IGKISAEFARRVA KCGL +F+PSAFQIRYGG+KGVVA+DP SS+KLSLRKSM K++S+N
Sbjct: 539  IGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESEN 598

Query: 1778 TKLDVLAWSKYQPCFLNRQLITLLSTLGVKDHAFEKKQRKAVAELDEILTDPLRAQEALE 1599
            TKLDVLAWSKYQPC++NRQLITLLSTLGV+D  FEKKQR+ V  LD ILTDPL A EAL 
Sbjct: 599  TKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEKKQREVVDRLDAILTDPLEAHEALG 658

Query: 1598 LMSPGENTNILKEMLNCGYKPDSEPFLSMMLQTFRASKLLDLRVKTRIFIPNGRSMMGCL 1419
            LM+PGENTNILK ++ CGYKPD+EPFLSMMLQ FRASKLL+LR KTRIFI  GRSMMGCL
Sbjct: 659  LMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCL 718

Query: 1418 DETNTLEYGEVFVQYSG---AGRRKFCEDSQLFYENYSENAFILKGTVVVAKNPCLHPGD 1248
            DET TLEYG+V VQYS     GRR                 FI+ G VVVAKNPCLHPGD
Sbjct: 719  DETRTLEYGQVVVQYSDPMRPGRR-----------------FIITGPVVVAKNPCLHPGD 761

Query: 1247 IRVLKAVNVPALQHMVDCVV----------------XXXXXIYFVCWDSDLIPPRQASPM 1116
            +RVL+AVNVPAL HMVDCVV                     IYFVCWD +LIPPR + PM
Sbjct: 762  VRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEPM 821

Query: 1115 DYTPAPTMQLDDEVTIEEIEEYFTNYIVNDSLGIIANAHTVLADRETKKAMSDPCLELAK 936
            DYTP P   LD +VTIEE+EEYF NYIVNDSLGIIANAHT  AD+E  KA SDPC+ELA+
Sbjct: 822  DYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAR 881

Query: 935  LFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKPDKPTYISENVIGKLFRGVRDKAPHTSS 756
             FS+AVDFPKTGV AEIP HL VKEYPDFMEKPDKPTY S+NVIGKLFR V+++AP   S
Sbjct: 882  KFSVAVDFPKTGVAAEIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLIS 941

Query: 755  IESFTREVARRSYDTDLEVPGFEDYIDEAFEYKTEYDYKLGNLMDYYGIKTEAEILSGGI 576
            I+SFT +VA +SYD D+EV GFE+Y+DEAF YK  YD+KLGNLMDYYGIKTEAEILSGGI
Sbjct: 942  IKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYGIKTEAEILSGGI 1001

Query: 575  MKMSKSFDRRKDAEAVGMAVRSLRKEARSWFKRGGELDDAYAKASAWYYVTYHHTYWGCY 396
            M+MSKSF +R+DAE++G AVR+LRKE  S F    E +++ AKASAWY++TYH +YWG Y
Sbjct: 1002 MRMSKSFTKRRDAESIGRAVRALRKETLSLFNATEEENES-AKASAWYHITYHSSYWGLY 1060

Query: 395  NEGLNRDHYISFPWCVYDKLIHIKRKKLISGRNQQMSSLEWEFNHGLRL 249
            NEGLNRDH++SF WCVYDKL+ I  KK  +GR Q+  +LE    H LRL
Sbjct: 1061 NEGLNRDHFLSFAWCVYDKLVRI--KKTNAGRRQRQETLE-RLGHVLRL 1106