BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00002933
         (3838 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s...  1942   0.0  
ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III s...  1935   0.0  
ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s...  1913   0.0  
ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr...  1889   0.0  
ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s...  1888   0.0  
gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...  1885   0.0  
gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma ...  1870   0.0  
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put...  1838   0.0  
ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III s...  1832   0.0  
ref|XP_006362278.1| PREDICTED: DNA-directed RNA polymerase III s...  1815   0.0  
ref|XP_004249177.1| PREDICTED: DNA-directed RNA polymerase III s...  1802   0.0  
ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III s...  1782   0.0  
ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutr...  1779   0.0  
ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arab...  1778   0.0  
gb|EPS66119.1| hypothetical protein M569_08657, partial [Genlise...  1767   0.0  
ref|XP_004308665.1| PREDICTED: DNA-directed RNA polymerase III s...  1762   0.0  
ref|XP_006279912.1| hypothetical protein CARUB_v10025768mg [Caps...  1762   0.0  
ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis t...  1762   0.0  
gb|EOY19615.1| DNA-directed RNA polymerase isoform 7 [Theobroma ...  1756   0.0  
ref|XP_006583557.1| PREDICTED: DNA-directed RNA polymerase III s...  1749   0.0  

>ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Solanum tuberosum] gi|565393087|ref|XP_006362215.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Solanum tuberosum]
          Length = 1153

 Score = 1942 bits (5031), Expect = 0.0
 Identities = 969/1143 (84%), Positives = 1038/1143 (90%), Gaps = 5/1143 (0%)
 Frame = -2

Query: 3675 TVQEENDDTNVLGIDKRFLAAPMKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEIKK 3496
            T+    +D+N  GIDK+ LA+P+K+ VDK+QL+PEFLKVRGLVKQHLDSFNYFVRTEIKK
Sbjct: 6    TMSNTTEDSNQ-GIDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFVRTEIKK 64

Query: 3495 IVSANQWIRSKVDERVYLRYTDVRIGEPSMIIDGVTEKLTPHKCRLSDMTYAAPIFVSIE 3316
            IV ANQ IRS +D  +YLRY DV IGEPSM+ D VTEKL P KCRLSD TYAAPI+V+IE
Sbjct: 65   IVRANQEIRSILDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIYVTIE 124

Query: 3315 YR-GQSQSTDPLKKKDVIIGRMPIMLRSRSCVLYGKDEEELANLGECPLDPGGYFVIKGT 3139
            Y  G    T    KK+VIIGRMPIMLRS  CVLYGKDE+ELA LGECPLDPGGYFVIKGT
Sbjct: 125  YTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGT 184

Query: 3138 EKVILIQEQLSKNRIIIDIDKKGCVQXXXXXXXXXXXXXXVIKMEKEKIYLYLNQFKNKV 2959
            EKVILIQEQLSKNRIIID DKKG VQ              +IKMEKEK+YL LN FK KV
Sbjct: 185  EKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTKV 244

Query: 2958 PIMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYMQQEALDYLE--KQVK 2785
            PIMVVMKAMGMESDQEVVQMIGRDPR+SALLLPSIEECA   +Y Q +AL++LE  K +K
Sbjct: 245  PIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQHQALEFLESDKMLK 304

Query: 2784 QLPYHYAPVEE--RALSILADIFIANIPVREKNFRSKCIYVAVMLRRMMEAILNKDAMDD 2611
               Y   PVE+  RALSIL DIF+AN+PV + NFR KCIYVAVM+RRMMEAILNKDAMDD
Sbjct: 305  MPSYSTGPVEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDD 364

Query: 2610 KDYVGNKRLELSGQMLSLLFEDLFKTMNDEVKKTIDAILDKPSRSSRFDISQYIVKDSIT 2431
            KDYVGNKRLELSGQ+LSLLFEDLFKTMNDE ++TID +L +PSRSSR DISQYIVKDSIT
Sbjct: 365  KDYVGNKRLELSGQLLSLLFEDLFKTMNDEARRTIDTLLARPSRSSRLDISQYIVKDSIT 424

Query: 2430 VGLERSLSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQ 2251
            +GLER+LSTGNWDVKRFRMHRKGMTQVVARLSYIG+LGHMTKISPQFEKSRKVSGPRALQ
Sbjct: 425  MGLERTLSTGNWDVKRFRMHRKGMTQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQ 484

Query: 2250 PSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELH 2071
            PSQ+GMLCPCDTPEGEACGLVKNLALMTHVTTDE+E PI+SLCYCLGVEDLE LS EELH
Sbjct: 485  PSQFGMLCPCDTPEGEACGLVKNLALMTHVTTDEDERPIMSLCYCLGVEDLEQLSPEELH 544

Query: 2070 SPNSFLIILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNEKQRCVYIASDGGRV 1891
             P S+LI LNGLILGKH+ PQRFANAMR+LRRAGKIGEFVSI+VNEKQRCVYIASDGGRV
Sbjct: 545  MPTSYLITLNGLILGKHKSPQRFANAMRRLRRAGKIGEFVSIFVNEKQRCVYIASDGGRV 604

Query: 1890 CRPLVIADKGVSRIKEPHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYDSEATP 1711
            CRPLVIADKGVSRIKE HM+EL+DGVR+FDSFL++GLIEYLDVNEENN LIALY+ EATP
Sbjct: 605  CRPLVIADKGVSRIKEHHMRELRDGVRDFDSFLKDGLIEYLDVNEENNTLIALYEKEATP 664

Query: 1710 ETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLIYLL 1531
            ETTHIEIEPFTILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD L+YLL
Sbjct: 665  ETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDGLLYLL 724

Query: 1530 VYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVM 1351
            VYPQRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVM
Sbjct: 725  VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVM 784

Query: 1350 KKMSAISQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKI 1171
            KK SAI QKYENGTSDRII+PQRQG++A++MQILDDDG+AAPGE IR HDIYINKESP +
Sbjct: 785  KKYSAICQKYENGTSDRIIKPQRQGFEADKMQILDDDGMAAPGETIRNHDIYINKESPTV 844

Query: 1170 TRGPVTSPAGLSDSDYKPSRQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEV 991
            TR P+TSP GL DS YK SRQTYKGPEGETAVVDRVAL SD+NNNL IK+MIRHTRRPE+
Sbjct: 845  TRTPITSPMGLPDSAYKTSRQTYKGPEGETAVVDRVALYSDRNNNLSIKFMIRHTRRPEI 904

Query: 990  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV 811
            GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV
Sbjct: 905  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV 964

Query: 810  SSGRFHYGSAFGEPSGHADRVEAISETLVKHGFSYNGKDFLYSGITGMPLQAYIFMGPIY 631
            S GRFHYGSAFGEPSGHAD V++ISETLVKHGFSYNGKDF+YSGITGMPLQAYIFMGPIY
Sbjct: 965  SCGRFHYGSAFGEPSGHADTVDSISETLVKHGFSYNGKDFIYSGITGMPLQAYIFMGPIY 1024

Query: 630  YQKLKHMVLDKMHARGSGPRVMITRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERL 451
            YQKLKHMVLDKMHARGSGPRVM+TRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERL
Sbjct: 1025 YQKLKHMVLDKMHARGSGPRVMMTRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERL 1084

Query: 450  MISSDPFEVQVCRKCGLLGYYNYKLKKGICSTCKNGDNISTMKLPYACKLLIQELQSMNI 271
            MISSDPFEVQVCRKCGLLGYYNYKLK GICS CKNG+NISTMKLPYACKLL QELQSMNI
Sbjct: 1085 MISSDPFEVQVCRKCGLLGYYNYKLKTGICSMCKNGENISTMKLPYACKLLFQELQSMNI 1144

Query: 270  VPR 262
            VPR
Sbjct: 1145 VPR 1147


>ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
            lycopersicum]
          Length = 1183

 Score = 1935 bits (5013), Expect = 0.0
 Identities = 965/1143 (84%), Positives = 1037/1143 (90%), Gaps = 5/1143 (0%)
 Frame = -2

Query: 3675 TVQEENDDTNVLGIDKRFLAAPMKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEIKK 3496
            T+    +D+N  GIDK+ LA+ +K+ VDK+QL+PEFLKVRGLVKQHLDSFNYFVRTEIKK
Sbjct: 36   TMSNTTEDSNQ-GIDKQHLASHIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFVRTEIKK 94

Query: 3495 IVSANQWIRSKVDERVYLRYTDVRIGEPSMIIDGVTEKLTPHKCRLSDMTYAAPIFVSIE 3316
            IV ANQ IRS +D  +YLRY DV IGEPSM+ D VTEKL P KCRLSD TYAAPI+V+I+
Sbjct: 95   IVRANQEIRSTLDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIYVTID 154

Query: 3315 YR-GQSQSTDPLKKKDVIIGRMPIMLRSRSCVLYGKDEEELANLGECPLDPGGYFVIKGT 3139
            Y  G    T    KK+VIIGRMPIMLRS  CVLYGKDE+ELA LGECPLDPGGYFVIKGT
Sbjct: 155  YTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGT 214

Query: 3138 EKVILIQEQLSKNRIIIDIDKKGCVQXXXXXXXXXXXXXXVIKMEKEKIYLYLNQFKNKV 2959
            EKVILIQEQLSKNRIIID DKKG VQ              +IKMEKEK+YL LN FK KV
Sbjct: 215  EKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTKV 274

Query: 2958 PIMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYMQQEALDYLE--KQVK 2785
            PIMVVMKAMGMESDQEVVQMIGRDPR+SALLLPSIEECA   +Y QQ+AL++LE  K +K
Sbjct: 275  PIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQQQALEFLESDKMLK 334

Query: 2784 QLPYHYAPVEE--RALSILADIFIANIPVREKNFRSKCIYVAVMLRRMMEAILNKDAMDD 2611
               Y   P+E+  RALSIL DIF+AN+PV + NFR KCIYVAVM+RRMMEAILNKDAMDD
Sbjct: 335  MPSYSTGPIEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDD 394

Query: 2610 KDYVGNKRLELSGQMLSLLFEDLFKTMNDEVKKTIDAILDKPSRSSRFDISQYIVKDSIT 2431
            KDYVGNKRLELSGQ+LSLLFEDLFKTMNDE ++TID +L +PSRSSR DISQYI+KDSIT
Sbjct: 395  KDYVGNKRLELSGQLLSLLFEDLFKTMNDEARRTIDTLLARPSRSSRLDISQYIIKDSIT 454

Query: 2430 VGLERSLSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQ 2251
            +GLER+LSTGNWDVKRFRMHRKGMTQVVARLSYIG+LGHMTKISPQFEKSRKVSGPRALQ
Sbjct: 455  MGLERTLSTGNWDVKRFRMHRKGMTQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQ 514

Query: 2250 PSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELH 2071
            PSQ+GMLCPCDTPEGEACGLVKNLALMTHVTTDE+E PI+SLCYCLGVEDLE LS EELH
Sbjct: 515  PSQFGMLCPCDTPEGEACGLVKNLALMTHVTTDEDERPIMSLCYCLGVEDLEQLSPEELH 574

Query: 2070 SPNSFLIILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNEKQRCVYIASDGGRV 1891
             P S+LI LNGLILGKH+ PQRFANAMR+LRRAGK+GEFVSI+VNEKQRCVYIASDGGRV
Sbjct: 575  MPTSYLITLNGLILGKHKSPQRFANAMRRLRRAGKVGEFVSIFVNEKQRCVYIASDGGRV 634

Query: 1890 CRPLVIADKGVSRIKEPHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYDSEATP 1711
            CRPLVIADKGVSRIKE HM+EL+DG+R+FDSFL++GLIEYLDVNEENN LIALY+ EATP
Sbjct: 635  CRPLVIADKGVSRIKEHHMRELRDGLRDFDSFLKDGLIEYLDVNEENNTLIALYEKEATP 694

Query: 1710 ETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLIYLL 1531
            ETTHIEIEPFTILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD L+YLL
Sbjct: 695  ETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDGLLYLL 754

Query: 1530 VYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVM 1351
            VYPQRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVM
Sbjct: 755  VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVM 814

Query: 1350 KKMSAISQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKI 1171
            KK SAI QKYENGTSDRII+PQRQG +A+RMQILDDDG+AAPGE IR HDIYINKESP +
Sbjct: 815  KKYSAICQKYENGTSDRIIKPQRQGPEADRMQILDDDGMAAPGETIRNHDIYINKESPTV 874

Query: 1170 TRGPVTSPAGLSDSDYKPSRQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEV 991
            TR PVTSP GL DS YK S+QTYKGPEGETAVVDRVAL SD+NNNL IK+MIRHTRRPE+
Sbjct: 875  TRTPVTSPMGLPDSAYKSSKQTYKGPEGETAVVDRVALYSDRNNNLSIKFMIRHTRRPEL 934

Query: 990  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV 811
            GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV
Sbjct: 935  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV 994

Query: 810  SSGRFHYGSAFGEPSGHADRVEAISETLVKHGFSYNGKDFLYSGITGMPLQAYIFMGPIY 631
            S GRFHYGSAFGEPSGHAD V+AISETLVKHGFSYNGKDF+YSGITGMPLQAYIFMGPIY
Sbjct: 995  SCGRFHYGSAFGEPSGHADTVDAISETLVKHGFSYNGKDFIYSGITGMPLQAYIFMGPIY 1054

Query: 630  YQKLKHMVLDKMHARGSGPRVMITRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERL 451
            YQKLKHMV+DKMHARGSGPRVM+TRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERL
Sbjct: 1055 YQKLKHMVVDKMHARGSGPRVMMTRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERL 1114

Query: 450  MISSDPFEVQVCRKCGLLGYYNYKLKKGICSTCKNGDNISTMKLPYACKLLIQELQSMNI 271
            MISSDPFEVQVCRKCGLLGYYNYKLK GICS CKNG+NISTMKLPYACKLL QELQSMNI
Sbjct: 1115 MISSDPFEVQVCRKCGLLGYYNYKLKTGICSMCKNGENISTMKLPYACKLLFQELQSMNI 1174

Query: 270  VPR 262
            VPR
Sbjct: 1175 VPR 1177


>ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1142

 Score = 1913 bits (4956), Expect = 0.0
 Identities = 941/1133 (83%), Positives = 1030/1133 (90%), Gaps = 6/1133 (0%)
 Frame = -2

Query: 3642 LGIDKRFLAAPMKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEIKKIVSANQWIRSK 3463
            + I K F A P+K AVDKF LLPEFLKVRGLVKQHLDSFNYFV+T+IKKIV AN  I S 
Sbjct: 4    MSIHKHFPADPVKQAVDKFPLLPEFLKVRGLVKQHLDSFNYFVKTDIKKIVRANDRIVSS 63

Query: 3462 VDERVYLRYTDVRIGEPSMIIDGVTEKLTPHKCRLSDMTYAAPIFVSIEY-RGQSQSTDP 3286
            VD  +YLR+ DVRIGEPS+ +DG++EKL PH CRLSDMTYAAPI V+IEY  G       
Sbjct: 64   VDPSIYLRFKDVRIGEPSITVDGISEKLNPHTCRLSDMTYAAPILVNIEYITGSHVQKTR 123

Query: 3285 LKKKDVIIGRMPIMLRSRSCVLYGKDEEELANLGECPLDPGGYFVIKGTEKVILIQEQLS 3106
            ++K DV+IGRMPIMLRS  CVLY KDE ELA LGECPLDPGGYFV+KGTEKVILIQEQLS
Sbjct: 124  VEKNDVVIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLS 183

Query: 3105 KNRIIIDIDKKGCVQXXXXXXXXXXXXXXVIKMEKEKIYLYLNQFKNKVPIMVVMKAMGM 2926
            KNRIIID DKKG +               VI MEKEKI+L LNQF +K+PIM+VMKAMGM
Sbjct: 184  KNRIIIDTDKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQFTSKIPIMIVMKAMGM 243

Query: 2925 ESDQEVVQMIGRDPRYSALLLPSIEECAKANVYMQQEALDYLEKQVKQLPYHYAPVEE-- 2752
            ESDQEVVQM+GR+PRYSALLLPS+EECA   +Y QQ+AL++LE++VK+LP++   +E+  
Sbjct: 244  ESDQEVVQMVGRNPRYSALLLPSMEECASHGIYTQQQALEFLERKVKKLPFYNPSLEKEG 303

Query: 2751 RALSILADIFIANIPVREKNFRSKCIYVAVMLRRMMEAILNKDAMDDKDYVGNKRLELSG 2572
            R ++IL D FIAN+PVR+ NFR KC+YVAVMLRRMM+AILNKDAMDDKDYVGNKRLELSG
Sbjct: 304  RGMAILRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSG 363

Query: 2571 QMLSLLFEDLFKTMNDEVKKTIDAILDKPSRSSRFDISQ---YIVKDSITVGLERSLSTG 2401
            Q++SLLFEDLFKTM  EVKKTIDAIL KPSRSSRFD SQ   +IV+DSITVGLER+LSTG
Sbjct: 364  QLISLLFEDLFKTMISEVKKTIDAILAKPSRSSRFDFSQCLRFIVRDSITVGLERTLSTG 423

Query: 2400 NWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPC 2221
            NWDVKRFRMHRKGM+QVVARLSYIG+LGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPC
Sbjct: 424  NWDVKRFRMHRKGMSQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPC 483

Query: 2220 DTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHSPNSFLIILN 2041
            DTPEGEACGLVKNLALMTHVTTDEEE P++SLCY LGVEDLELLSGEELH+PNSFLII N
Sbjct: 484  DTPEGEACGLVKNLALMTHVTTDEEESPLISLCYSLGVEDLELLSGEELHTPNSFLIIFN 543

Query: 2040 GLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNEKQRCVYIASDGGRVCRPLVIADKG 1861
            GLILGKHR+PQRFANA+RKLRRAGKIGEFVS++VNEKQ CVYIASDGGRVCRP+VIADKG
Sbjct: 544  GLILGKHRRPQRFANALRKLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPVVIADKG 603

Query: 1860 VSRIKEPHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYDSEATPETTHIEIEPF 1681
             SRIKE HMKEL DGVR FD FLR+GLIEYLDVNEENNALIALY+++A PETTHIEIEPF
Sbjct: 604  KSRIKEHHMKELIDGVRTFDDFLRDGLIEYLDVNEENNALIALYEADAKPETTHIEIEPF 663

Query: 1680 TILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTT 1501
            TILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMD+L+YLLVYPQRPLLTT
Sbjct: 664  TILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTT 723

Query: 1500 KTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAISQKY 1321
            +TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKK SA++Q+Y
Sbjct: 724  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKFSAVNQRY 783

Query: 1320 ENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKITRGPVTSPAG 1141
            EN  SDRI+RP + G+DAERMQILDDDGLAAPGEII+P+DIYINKESP IT+GP+ SP G
Sbjct: 784  ENNASDRIVRPLKVGHDAERMQILDDDGLAAPGEIIKPNDIYINKESPIITKGPLISPVG 843

Query: 1140 LSDSDYKPSRQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSSRHGQ 961
            L DS YKPSRQT+KGPEGE +VVDRVALCSDKN+NLCIK++IRHTRRPEVGDKFSSRHGQ
Sbjct: 844  LPDSAYKPSRQTFKGPEGEASVVDRVALCSDKNSNLCIKFLIRHTRRPEVGDKFSSRHGQ 903

Query: 960  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFHYGSA 781
            KGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSA
Sbjct: 904  KGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 963

Query: 780  FGEPSGHADRVEAISETLVKHGFSYNGKDFLYSGITGMPLQAYIFMGPIYYQKLKHMVLD 601
            FGEPSGHAD+VE IS+TLVKHGFSY+GKDF+YSGITG PLQAYIFMGPIYYQKLKHMVLD
Sbjct: 964  FGEPSGHADKVETISKTLVKHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1023

Query: 600  KMHARGSGPRVMITRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQ 421
            KMHARGSGPRVM+TRQPTEGR+RNGGLRVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQ
Sbjct: 1024 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1083

Query: 420  VCRKCGLLGYYNYKLKKGICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPR 262
            VCR CGLLGYYN+KLK GICSTCKNGDNISTMKLPYACKLL QELQ+MN+VPR
Sbjct: 1084 VCRVCGLLGYYNHKLKIGICSTCKNGDNISTMKLPYACKLLFQELQAMNVVPR 1136


>ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina]
            gi|557534507|gb|ESR45625.1| hypothetical protein
            CICLE_v10000078mg [Citrus clementina]
          Length = 1149

 Score = 1889 bits (4893), Expect = 0.0
 Identities = 929/1143 (81%), Positives = 1028/1143 (89%), Gaps = 3/1143 (0%)
 Frame = -2

Query: 3681 IMTVQEENDDTNVLGIDKRFLAAPMKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEI 3502
            +M V+E   D  +   DK+ LAAP+KS VDKFQLLPEFLKVRGLVKQHLDSFNYFV T I
Sbjct: 3    LMQVEESPKDEQLP--DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 60

Query: 3501 KKIVSANQWIRSKVDERVYLRYTDVRIGEPSMIIDGVTEKLTPHKCRLSDMTYAAPIFVS 3322
            +KIV AN  I S +D  ++LR+ DVRIG+PSM +DGV+EKL PH CRLSDMTYAAPI V+
Sbjct: 61   RKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVN 120

Query: 3321 IEY-RGQSQSTDPLKKKDVIIGRMPIMLRSRSCVLYGKDEEELANLGECPLDPGGYFVIK 3145
            IEY +G       ++K DV+IGR+PIMLRS  CVLYGKDE ELA LGECPLDPGGYF+IK
Sbjct: 121  IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180

Query: 3144 GTEKVILIQEQLSKNRIIIDIDKKGCVQXXXXXXXXXXXXXXVIKMEKEKIYLYLNQFKN 2965
            GTEKV+LIQEQLSKNR+IID DKKG +               VI+MEK K+YL LNQF  
Sbjct: 181  GTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVK 240

Query: 2964 KVPIMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYMQQEALDYLEKQVK 2785
            K+PIMVVMKAMGMESDQEVVQM+GRDPRYSALLLPSIEECA  ++Y Q++AL+YLE +VK
Sbjct: 241  KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300

Query: 2784 QLPYHYAPV--EERALSILADIFIANIPVREKNFRSKCIYVAVMLRRMMEAILNKDAMDD 2611
            +  +   P   E RA SIL D+F+AN+PV   NFR KC YVAVMLRRM+EA+LNKDAMDD
Sbjct: 301  RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360

Query: 2610 KDYVGNKRLELSGQMLSLLFEDLFKTMNDEVKKTIDAILDKPSRSSRFDISQYIVKDSIT 2431
            KDYVGNKRLELSGQ++SLLFEDLFKTM  EV+KT+D IL KPSRSSRFD+SQ+IV+DSIT
Sbjct: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSIT 420

Query: 2430 VGLERSLSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQ 2251
            VGLER+LSTGN+DVKRF+MHRKGMTQV+ARLS+IGTLGHMT++SPQFEKSRKVSGPRALQ
Sbjct: 421  VGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQ 480

Query: 2250 PSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELH 2071
            PSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP++SLCYCLGVEDLELLSGEELH
Sbjct: 481  PSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELH 540

Query: 2070 SPNSFLIILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNEKQRCVYIASDGGRV 1891
            +PNSFL+I NGLILGKHR+P+ FA+ MRKLRRAGKIGEFVS++VNEKQRCVYIASDGGRV
Sbjct: 541  NPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRV 600

Query: 1890 CRPLVIADKGVSRIKEPHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYDSEATP 1711
            CRPLVIADKG+SRIKE HMKEL DGVR+FD FLREGLIEYLDVNEENNALIALY+ +ATP
Sbjct: 601  CRPLVIADKGISRIKEHHMKELSDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATP 660

Query: 1710 ETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLIYLL 1531
            +TTHIEIEPFTILGV AGLIP+PHHNQSPRNTYQCAMGKQAMGNIA+NQLCRMD+L+YLL
Sbjct: 661  DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLL 720

Query: 1530 VYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVM 1351
            VYPQRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV+
Sbjct: 721  VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVV 780

Query: 1350 KKMSAISQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKI 1171
            KK +AI+QKY N TSDRI+RP R G  +ERMQILDDDGLAAPGEII+P+D+YINKESP  
Sbjct: 781  KKYTAINQKYANSTSDRILRPDRTGPGSERMQILDDDGLAAPGEIIKPNDVYINKESPLE 840

Query: 1170 TRGPVTSPAGLSDSDYKPSRQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEV 991
            TRG + SP G +DS Y+ +RQTYKGP+GET VVDRVALCSDKN +LCIK++IRHTRRPE+
Sbjct: 841  TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 900

Query: 990  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV 811
            GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGV
Sbjct: 901  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 960

Query: 810  SSGRFHYGSAFGEPSGHADRVEAISETLVKHGFSYNGKDFLYSGITGMPLQAYIFMGPIY 631
            S GRFHYGSAFGEPSGHAD VE+ISETLVKHGFSYNGKD +YSGITG PLQAYIFMGPIY
Sbjct: 961  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1020

Query: 630  YQKLKHMVLDKMHARGSGPRVMITRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERL 451
            YQKLKHMVLDKMHARGSGPRVM+TRQPTEGR+RNGGLRVGEMERDCLIAYGASMLI+ERL
Sbjct: 1021 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1080

Query: 450  MISSDPFEVQVCRKCGLLGYYNYKLKKGICSTCKNGDNISTMKLPYACKLLIQELQSMNI 271
            M+SSDPFEVQVCR CGLLGYYN+KLK GICSTCKNG+NIS+MKLPYACKLLIQELQSMNI
Sbjct: 1081 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGNNISSMKLPYACKLLIQELQSMNI 1140

Query: 270  VPR 262
            VPR
Sbjct: 1141 VPR 1143


>ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Citrus sinensis] gi|568883651|ref|XP_006494573.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Citrus sinensis]
          Length = 1149

 Score = 1888 bits (4891), Expect = 0.0
 Identities = 926/1127 (82%), Positives = 1021/1127 (90%), Gaps = 3/1127 (0%)
 Frame = -2

Query: 3633 DKRFLAAPMKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEIKKIVSANQWIRSKVDE 3454
            DK+ LAAP+KS VDKFQLLPEFLKVRGLVKQHLDSFNYFV T I+KIV AN  I S +D 
Sbjct: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76

Query: 3453 RVYLRYTDVRIGEPSMIIDGVTEKLTPHKCRLSDMTYAAPIFVSIEY-RGQSQSTDPLKK 3277
             ++LR+ DVRIG+PSM +DGV+EKL PH CRLSDMTYAAPI V+IEY +G       ++K
Sbjct: 77   SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136

Query: 3276 KDVIIGRMPIMLRSRSCVLYGKDEEELANLGECPLDPGGYFVIKGTEKVILIQEQLSKNR 3097
             DV+IGR+PIMLRS  CVLYGKDE ELA LGECPLDPGGYF+IKGTEKV+LIQEQLSKNR
Sbjct: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196

Query: 3096 IIIDIDKKGCVQXXXXXXXXXXXXXXVIKMEKEKIYLYLNQFKNKVPIMVVMKAMGMESD 2917
            +IID DKKG +               VI+MEK K+YL LNQF  K+PIMVVMKAMG+ESD
Sbjct: 197  VIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGIESD 256

Query: 2916 QEVVQMIGRDPRYSALLLPSIEECAKANVYMQQEALDYLEKQVKQLPYHYAPV--EERAL 2743
            QEVVQM+GRDPRYSALLLPSIEECA  ++Y Q++AL+YLE +VK+  +   P   E RA 
Sbjct: 257  QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316

Query: 2742 SILADIFIANIPVREKNFRSKCIYVAVMLRRMMEAILNKDAMDDKDYVGNKRLELSGQML 2563
            SIL D+F+AN+PV   NFR KC YVAVMLRRM+EA+LNKDAMDDKDYVGNKRLELSGQ++
Sbjct: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376

Query: 2562 SLLFEDLFKTMNDEVKKTIDAILDKPSRSSRFDISQYIVKDSITVGLERSLSTGNWDVKR 2383
            SLLFEDLFKTM  EV+KT+D IL KPSRSSRFD+SQ+IV+DSITVGLER+LSTGN+DVKR
Sbjct: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKR 436

Query: 2382 FRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 2203
            F+MHRKGMTQV+ARLS+IGTLGHMT++SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE
Sbjct: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496

Query: 2202 ACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHSPNSFLIILNGLILGK 2023
            ACGLVKNLALMTHVTTDEEEGP++SLCYCLGVEDLELLSGEELH+PNSFL+I NGLILGK
Sbjct: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556

Query: 2022 HRKPQRFANAMRKLRRAGKIGEFVSIYVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKE 1843
            HR+P+ FA+ MRKLRRAGKIGEFVS++VNEKQRCVYIASDGGRVCRPLVIADKG+SRIKE
Sbjct: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616

Query: 1842 PHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYDSEATPETTHIEIEPFTILGVC 1663
             HMKEL DGVR+FD FLREGLIEYLDVNEENNALIALY+ +ATP+TTHIEIEPFTILGV 
Sbjct: 617  HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676

Query: 1662 AGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTKTIELV 1483
            AGLIP+PHHNQSPRNTYQCAMGKQAMGNIA+NQLCRMD+L+YLLVYPQRPLLTT+TIELV
Sbjct: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736

Query: 1482 GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAISQKYENGTSD 1303
            GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV+KK +AI+QKY N TSD
Sbjct: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796

Query: 1302 RIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKITRGPVTSPAGLSDSDY 1123
            RI+RP R G  AERMQILDDDGLAAPGEII+P+D+YINKESP  TRG + SP G +DS Y
Sbjct: 797  RILRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 856

Query: 1122 KPSRQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSSRHGQKGVCGT 943
            + +RQTYKGP+GET VVDRVALCSDKN +LCIK++IRHTRRPE+GDKFSSRHGQKGVCGT
Sbjct: 857  RSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGT 916

Query: 942  IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFHYGSAFGEPSG 763
            IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGEPSG
Sbjct: 917  IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 976

Query: 762  HADRVEAISETLVKHGFSYNGKDFLYSGITGMPLQAYIFMGPIYYQKLKHMVLDKMHARG 583
            HAD VE+ISETLVKHGFSYNGKD +YSGITG PLQAYIFMGPIYYQKLKHMVLDKMHARG
Sbjct: 977  HADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1036

Query: 582  SGPRVMITRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRKCG 403
            SGPRVM+TRQPTEGR+RNGGLRVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQVCR CG
Sbjct: 1037 SGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCG 1096

Query: 402  LLGYYNYKLKKGICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPR 262
            LLGYYN+KLK GICSTCKNGDNIS+MKLPYACKLLIQELQSMNIVPR
Sbjct: 1097 LLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1143


>gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1158

 Score = 1885 bits (4882), Expect = 0.0
 Identities = 931/1137 (81%), Positives = 1023/1137 (89%), Gaps = 4/1137 (0%)
 Frame = -2

Query: 3660 NDDTNVLGIDKRFLAAPMKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEIKKIVSAN 3481
            N + + + +DK+ LAAP+KSAVDKFQLLPEFLKVRGLVKQHLDSFNYFV T IKKIV AN
Sbjct: 16   NSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRAN 75

Query: 3480 QWIRSKVDERVYLRYTDVRIGEPSMIIDGVTEKLTPHKCRLSDMTYAAPIFVSIEY-RGQ 3304
              I S VD  +YLR+ DVRIGEPSM I+ V+EK+ PH CRLSDMTYAAPIFV+IEY +G 
Sbjct: 76   DRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGS 135

Query: 3303 SQSTDPLKKKDVIIGRMPIMLRSRSCVLYGKDEEELANLGECPLDPGGYFVIKGTEKVIL 3124
                  L+K D++IGRMPIMLRS  CVLYGKDE ELA LGECPLDPGGYFVIKG EKVIL
Sbjct: 136  HGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVIL 195

Query: 3123 IQEQLSKNRIIIDIDKKGCVQXXXXXXXXXXXXXXVIKMEKEKIYLYLNQFKNKVPIMVV 2944
            IQEQLSKNRIIID DKKG +               VI+MEKEKIYL LNQF  K+PIMVV
Sbjct: 196  IQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVV 255

Query: 2943 MKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYMQQEALDYLEKQVKQLPYHYA 2764
            MKAMGMESDQEVVQM+GRDP Y+A+LLPSIEECA   +Y Q++AL+YLE +VK++ Y   
Sbjct: 256  MKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGP 315

Query: 2763 PVEE--RALSILADIFIANIPVREKNFRSKCIYVAVMLRRMMEAILNKDAMDDKDYVGNK 2590
              E+  RALSIL D+F+AN+PVR  NFR KC+YVAVMLRRM+EAILNKDAMDDKDYVGNK
Sbjct: 316  ASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNK 375

Query: 2589 RLELSGQMLSLLFEDLFKTMNDEVKKTIDAILDKPSRSSRFDISQYI-VKDSITVGLERS 2413
            RLELSGQ++SLLFEDLFKT   EV+K ID +L KPSRSS  D SQ++  +++IT GLER+
Sbjct: 376  RLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERT 435

Query: 2412 LSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGM 2233
            LSTGN+D+KRF+MHRKGMTQV+ARLS+IGTLG+MTK+SPQFEKSRKVSGPRALQPSQWGM
Sbjct: 436  LSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGM 495

Query: 2232 LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHSPNSFL 2053
            LCPCDTPEGEACGLVKNLALMTHVTTDE+EGP++SLCYCLGVEDLELLSGEELH+PNSFL
Sbjct: 496  LCPCDTPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFL 555

Query: 2052 IILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNEKQRCVYIASDGGRVCRPLVI 1873
            +ILNGLILGKHR+PQ FA AMRKLRRAGK+GEFVS++VNEKQRCVYIASDGGRVCRPLVI
Sbjct: 556  VILNGLILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 615

Query: 1872 ADKGVSRIKEPHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYDSEATPETTHIE 1693
            ADKGVSRIKE HMKEL DGVR FD FLR+GLIEYLDVNEENNALIALY+ EATPETTHIE
Sbjct: 616  ADKGVSRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIE 675

Query: 1692 IEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLIYLLVYPQRP 1513
            IEPFTILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTL+YLLVYPQRP
Sbjct: 676  IEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRP 735

Query: 1512 LLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAI 1333
            LLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMK+ SA+
Sbjct: 736  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAV 795

Query: 1332 SQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKITRGPVT 1153
            +QKYE G SDRI+RPQR G  +ERMQILDDDG+A PGEIIRP+DIYINKES   TRG   
Sbjct: 796  NQKYETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRV 855

Query: 1152 SPAGLSDSDYKPSRQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSS 973
            S   L DS Y+P+RQTYKGPEGE+ VVDRVALC+D+N+NL IK++IRHTRRPEVGDKFSS
Sbjct: 856  SSESLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSS 915

Query: 972  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFH 793
            RHGQKGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFH
Sbjct: 916  RHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 975

Query: 792  YGSAFGEPSGHADRVEAISETLVKHGFSYNGKDFLYSGITGMPLQAYIFMGPIYYQKLKH 613
            YGSAFGEPSGHADRVEAISETL+KHGFSYNGKDF+YSGITG PLQAYIFMGPIYYQKLKH
Sbjct: 976  YGSAFGEPSGHADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKH 1035

Query: 612  MVLDKMHARGSGPRVMITRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDP 433
            MVLDKMHARG+GPRVM+TRQPTEGR+RNGGLRVGEMERDCLIAYGASMLI+ERLMISSDP
Sbjct: 1036 MVLDKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDP 1095

Query: 432  FEVQVCRKCGLLGYYNYKLKKGICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPR 262
            FEVQVCRKCGLLGYY++KLK GICS+CKNGDN+STMKLPYACKLLIQELQSMNIVPR
Sbjct: 1096 FEVQVCRKCGLLGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQSMNIVPR 1152


>gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
          Length = 1153

 Score = 1870 bits (4845), Expect = 0.0
 Identities = 926/1137 (81%), Positives = 1018/1137 (89%), Gaps = 4/1137 (0%)
 Frame = -2

Query: 3660 NDDTNVLGIDKRFLAAPMKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEIKKIVSAN 3481
            N + + + +DK+ LAAP+KSAVDKFQLLPEFLKVRGLVKQHLDSFNYFV T IKKIV AN
Sbjct: 16   NSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRAN 75

Query: 3480 QWIRSKVDERVYLRYTDVRIGEPSMIIDGVTEKLTPHKCRLSDMTYAAPIFVSIEY-RGQ 3304
              I S VD  +YLR+ DVRIGEPSM I+ V+EK+ PH CRLSDMTYAAPIFV+IEY +G 
Sbjct: 76   DRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGS 135

Query: 3303 SQSTDPLKKKDVIIGRMPIMLRSRSCVLYGKDEEELANLGECPLDPGGYFVIKGTEKVIL 3124
                  L+K D++IGRMPIMLRS  CVLYGKDE ELA LGECPLDPGGYFVIKG EK   
Sbjct: 136  HGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEK--- 192

Query: 3123 IQEQLSKNRIIIDIDKKGCVQXXXXXXXXXXXXXXVIKMEKEKIYLYLNQFKNKVPIMVV 2944
              EQLSKNRIIID DKKG +               VI+MEKEKIYL LNQF  K+PIMVV
Sbjct: 193  --EQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVV 250

Query: 2943 MKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYMQQEALDYLEKQVKQLPYHYA 2764
            MKAMGMESDQEVVQM+GRDP Y+A+LLPSIEECA   +Y Q++AL+YLE +VK++ Y   
Sbjct: 251  MKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGP 310

Query: 2763 PVEE--RALSILADIFIANIPVREKNFRSKCIYVAVMLRRMMEAILNKDAMDDKDYVGNK 2590
              E+  RALSIL D+F+AN+PVR  NFR KC+YVAVMLRRM+EAILNKDAMDDKDYVGNK
Sbjct: 311  ASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNK 370

Query: 2589 RLELSGQMLSLLFEDLFKTMNDEVKKTIDAILDKPSRSSRFDISQYI-VKDSITVGLERS 2413
            RLELSGQ++SLLFEDLFKT   EV+K ID +L KPSRSS  D SQ++  +++IT GLER+
Sbjct: 371  RLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERT 430

Query: 2412 LSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGM 2233
            LSTGN+D+KRF+MHRKGMTQV+ARLS+IGTLG+MTK+SPQFEKSRKVSGPRALQPSQWGM
Sbjct: 431  LSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGM 490

Query: 2232 LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHSPNSFL 2053
            LCPCDTPEGEACGLVKNLALMTHVTTDE+EGP++SLCYCLGVEDLELLSGEELH+PNSFL
Sbjct: 491  LCPCDTPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFL 550

Query: 2052 IILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNEKQRCVYIASDGGRVCRPLVI 1873
            +ILNGLILGKHR+PQ FA AMRKLRRAGK+GEFVS++VNEKQRCVYIASDGGRVCRPLVI
Sbjct: 551  VILNGLILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 610

Query: 1872 ADKGVSRIKEPHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYDSEATPETTHIE 1693
            ADKGVSRIKE HMKEL DGVR FD FLR+GLIEYLDVNEENNALIALY+ EATPETTHIE
Sbjct: 611  ADKGVSRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIE 670

Query: 1692 IEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLIYLLVYPQRP 1513
            IEPFTILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTL+YLLVYPQRP
Sbjct: 671  IEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRP 730

Query: 1512 LLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAI 1333
            LLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMK+ SA+
Sbjct: 731  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAV 790

Query: 1332 SQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKITRGPVT 1153
            +QKYE G SDRI+RPQR G  +ERMQILDDDG+A PGEIIRP+DIYINKES   TRG   
Sbjct: 791  NQKYETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRV 850

Query: 1152 SPAGLSDSDYKPSRQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSS 973
            S   L DS Y+P+RQTYKGPEGE+ VVDRVALC+D+N+NL IK++IRHTRRPEVGDKFSS
Sbjct: 851  SSESLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSS 910

Query: 972  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFH 793
            RHGQKGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFH
Sbjct: 911  RHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 970

Query: 792  YGSAFGEPSGHADRVEAISETLVKHGFSYNGKDFLYSGITGMPLQAYIFMGPIYYQKLKH 613
            YGSAFGEPSGHADRVEAISETL+KHGFSYNGKDF+YSGITG PLQAYIFMGPIYYQKLKH
Sbjct: 971  YGSAFGEPSGHADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKH 1030

Query: 612  MVLDKMHARGSGPRVMITRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDP 433
            MVLDKMHARG+GPRVM+TRQPTEGR+RNGGLRVGEMERDCLIAYGASMLI+ERLMISSDP
Sbjct: 1031 MVLDKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDP 1090

Query: 432  FEVQVCRKCGLLGYYNYKLKKGICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPR 262
            FEVQVCRKCGLLGYY++KLK GICS+CKNGDN+STMKLPYACKLLIQELQSMNIVPR
Sbjct: 1091 FEVQVCRKCGLLGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQSMNIVPR 1147


>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
            gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase
            III subunit, putative [Ricinus communis]
          Length = 1139

 Score = 1838 bits (4760), Expect = 0.0
 Identities = 913/1136 (80%), Positives = 1005/1136 (88%), Gaps = 3/1136 (0%)
 Frame = -2

Query: 3660 NDDTNVLG--IDKRFLAAPMKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEIKKIVS 3487
            N++ N++   IDK+ L AP+KSAVDKFQLLPEFLKVRGLVKQHLDSFNYFV   IKKIV 
Sbjct: 12   NNEQNLVEQLIDKQKLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNIGIKKIVR 71

Query: 3486 ANQWIRSKVDERVYLRYTDVRIGEPSMIIDGVTEKLTPHKCRLSDMTYAAPIFVSIEY-R 3310
            AN  I S VD  +YLR+ DVRIG PS I+DGV+E+L+PH CRLSD TYAAPI V++EY  
Sbjct: 72   ANDRIVSTVDPGIYLRFKDVRIGTPSDIMDGVSEQLSPHMCRLSDKTYAAPILVNVEYIY 131

Query: 3309 GQSQSTDPLKKKDVIIGRMPIMLRSRSCVLYGKDEEELANLGECPLDPGGYFVIKGTEKV 3130
            G       ++K DV+IGRMPIMLRSRSCVLYGKDE ELA LGECPLDPGGYFVIKGTEKV
Sbjct: 132  GSHDQKTRVEKNDVVIGRMPIMLRSRSCVLYGKDEAELARLGECPLDPGGYFVIKGTEKV 191

Query: 3129 ILIQEQLSKNRIIIDIDKKGCVQXXXXXXXXXXXXXXVIKMEKEKIYLYLNQFKNKVPIM 2950
            ILIQEQLSKNRIIID DKKG +               +I+MEKEK+YL LNQF  K+PIM
Sbjct: 192  ILIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTIIQMEKEKMYLCLNQFVKKIPIM 251

Query: 2949 VVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYMQQEALDYLEKQVKQLPYH 2770
            VV+KAMGMESDQEVVQM+GRDPRYSALLLPSIEECA  ++Y QQ+AL+YL+ +       
Sbjct: 252  VVIKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAGLSIYTQQKALEYLDGK------- 304

Query: 2769 YAPVEERALSILADIFIANIPVREKNFRSKCIYVAVMLRRMMEAILNKDAMDDKDYVGNK 2590
                E RAL+IL D+F+AN+PV + NFR KC+YVAVMLRRMMEA+LNKDAMDDKDYVGNK
Sbjct: 305  ----ENRALTILRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDDKDYVGNK 360

Query: 2589 RLELSGQMLSLLFEDLFKTMNDEVKKTIDAILDKPSRSSRFDISQYIVKDSITVGLERSL 2410
            RLELSGQ++SLLFEDLFKTM  EV++TID +L K +RSSRFD++QYIV+D+IT GLER+L
Sbjct: 361  RLELSGQLISLLFEDLFKTMITEVQRTIDTVLTKQNRSSRFDLAQYIVRDNITNGLERTL 420

Query: 2409 STGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGML 2230
            STGN+DVKRF+MHRKGMTQV+ RLSYI +LG MT++SPQFEKSRKVSGPRALQPSQWGML
Sbjct: 421  STGNFDVKRFKMHRKGMTQVLVRLSYIASLGMMTRVSPQFEKSRKVSGPRALQPSQWGML 480

Query: 2229 CPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHSPNSFLI 2050
            CPCDTPEGEACGLVKNLALMTHVTTD+EEGP++SLCYCLGVEDLELLSGEELH+PNSFL+
Sbjct: 481  CPCDTPEGEACGLVKNLALMTHVTTDDEEGPLISLCYCLGVEDLELLSGEELHTPNSFLV 540

Query: 2049 ILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNEKQRCVYIASDGGRVCRPLVIA 1870
            I NGLILGKHR+PQ F N+MRKLRRAGKIGEFVS++VNEKQR VY+ASDGGRVCRPLVIA
Sbjct: 541  IFNGLILGKHRRPQYFVNSMRKLRRAGKIGEFVSVFVNEKQRAVYLASDGGRVCRPLVIA 600

Query: 1869 DKGVSRIKEPHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYDSEATPETTHIEI 1690
            D+GVSRIKE HMKEL+DGVR FD FLR+GLIEYLDVNEENNAL+ALY+ EATPETTHIEI
Sbjct: 601  DRGVSRIKEHHMKELRDGVRTFDDFLRDGLIEYLDVNEENNALVALYEGEATPETTHIEI 660

Query: 1689 EPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLIYLLVYPQRPL 1510
            EPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD+L+YLLVYPQRPL
Sbjct: 661  EPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRMDSLLYLLVYPQRPL 720

Query: 1509 LTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAIS 1330
            LTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIVMKK  AI 
Sbjct: 721  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYPAIR 780

Query: 1329 QKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKITRGPVTS 1150
            QKYENG SDRI+RP R     ER ++LD DGLAAPGEII+P DIY+ KE P  T GPV S
Sbjct: 781  QKYENGASDRILRPDR---TVERERVLDYDGLAAPGEIIKPSDIYVKKECPIDTMGPVKS 837

Query: 1149 PAGLSDSDYKPSRQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSSR 970
             A L +  Y+PS  +YKGPEGE+ V+DRVAL SD+NNNLCIK MIRHTRRPEVGDKFSSR
Sbjct: 838  SAALENIKYRPSPLSYKGPEGESPVIDRVALSSDRNNNLCIKVMIRHTRRPEVGDKFSSR 897

Query: 969  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFHY 790
            HGQKGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHY
Sbjct: 898  HGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 957

Query: 789  GSAFGEPSGHADRVEAISETLVKHGFSYNGKDFLYSGITGMPLQAYIFMGPIYYQKLKHM 610
            GSAFGEPSGHAD VEAISETLV  GFSYNGKD +YSGITG PLQAYIFMGPIYYQKLKHM
Sbjct: 958  GSAFGEPSGHADTVEAISETLVNRGFSYNGKDIIYSGITGCPLQAYIFMGPIYYQKLKHM 1017

Query: 609  VLDKMHARGSGPRVMITRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDPF 430
            VLDKMHARG+GPRVM+TRQPTEGR+RNGGLRVGEMERDCLIAYGASMLI+ERLMISSDPF
Sbjct: 1018 VLDKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPF 1077

Query: 429  EVQVCRKCGLLGYYNYKLKKGICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPR 262
            EVQVCR CGLLGY+N KL+ GICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPR
Sbjct: 1078 EVQVCRVCGLLGYFNQKLRAGICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPR 1133


>ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cucumis
            sativus]
          Length = 1158

 Score = 1832 bits (4746), Expect = 0.0
 Identities = 910/1130 (80%), Positives = 999/1130 (88%), Gaps = 5/1130 (0%)
 Frame = -2

Query: 3636 IDKRFLAAPMKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEIKKIVSANQWIRSKVD 3457
            IDK+F+  P+KSAVDKFQLLPEFLKVRGLVKQHLDSFNYFV TEIKKIV AN  I S  D
Sbjct: 26   IDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTD 85

Query: 3456 ERVYLRYTDVRIGEPSMIIDGVTEKLTPHKCRLSDMTYAAPIFVSIEYRGQSQSTD-PLK 3280
              +YLR+ DVRIGEPS+ ++ V+E + PH CRLSD+TYAAPI V IEY  +S +   P +
Sbjct: 86   PSIYLRFLDVRIGEPSVTVNAVSETINPHMCRLSDLTYAAPILVDIEYIEESHAQKAPRE 145

Query: 3279 KKDVIIGRMPIMLRSRSCVLYGKDEEELANLGECPLDPGGYFVIKGTEKVILIQEQLSKN 3100
            KKDV+IGRMPIMLRSR CVL+GKDE ELA LGECPLDPGGYF+IKGTEKV+LIQEQLSKN
Sbjct: 146  KKDVVIGRMPIMLRSRCCVLHGKDEAELARLGECPLDPGGYFIIKGTEKVVLIQEQLSKN 205

Query: 3099 RIIIDIDKKGCVQXXXXXXXXXXXXXXVIKMEKEKIYLYLNQFKN-KVPIMVVMKAMGME 2923
            RIIID DKKG +               VIKME EKIYL LN F   K+PIMVV+KAMGME
Sbjct: 206  RIIIDTDKKGNINASVTSSTEATKSKTVIKMENEKIYLQLNIFTTPKIPIMVVLKAMGME 265

Query: 2922 SDQEVVQMIGRDPRYSALLLPSIEECAKANVYMQQEALDYLEKQVKQLPYHYAPVEE--R 2749
            S QEVVQM+GRDPRY ALLLPSIEECAK  +Y Q++AL+YLE +VK+  +  AP E+  R
Sbjct: 266  SIQEVVQMVGRDPRYGALLLPSIEECAKEKIYTQEQALEYLETKVKKFQFASAPPEKEGR 325

Query: 2748 ALSILADIFIANIPVREKNFRSKCIYVAVMLRRMMEAILNKDAMDDKDYVGNKRLELSGQ 2569
            AL IL D+F+AN+PV + NF  KCIYVAVM+RRMM+AIL+KDAMDDKDYVGNKRLELSGQ
Sbjct: 326  ALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILSKDAMDDKDYVGNKRLELSGQ 385

Query: 2568 MLSLLFEDLFKTMNDEVKKTIDAILDKPSRSSRFDISQYIVKDSITVGLERSLSTGNWDV 2389
            ++SLLFEDLFKTM  EVKKTID +L K SRSSRFD SQ++  + I+ GLER+LSTGNWDV
Sbjct: 386  LISLLFEDLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHLNSNIISFGLERTLSTGNWDV 445

Query: 2388 KRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 2209
            KRFRMHRKGM+QV+ARLS+I T+GH+T++SPQFEKSRKVSGPRALQPSQWGMLCPCDTPE
Sbjct: 446  KRFRMHRKGMSQVLARLSFISTMGHVTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 505

Query: 2208 GEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHSPNSFLIILNGLIL 2029
            GEACGLVKNLALMTHVTTD+EEGP++SLCYCLGVEDLELLS EELH+PNSFL+I NG IL
Sbjct: 506  GEACGLVKNLALMTHVTTDQEEGPLISLCYCLGVEDLELLSAEELHTPNSFLVIFNGRIL 565

Query: 2028 GKHRKPQRFANAMRKLRRAGKIGEFVSIYVNEKQRCVYIASDGGRVCRPLVIADKGVSRI 1849
            GKHR+PQ FA  MR LRRAGKIGEFVS++VNEKQ CVYIASDGGRVCRPLVIADKGVSRI
Sbjct: 566  GKHRRPQYFATGMRMLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRI 625

Query: 1848 KEPHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYDSEATPETTHIEIEPFTILG 1669
            KE HMKEL DGVR FD FLR+GLIEYLDVNEENNALIALY+ EATPETTHIEIEPFTILG
Sbjct: 626  KEYHMKELSDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILG 685

Query: 1668 VCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTKTIE 1489
            V AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMDTL+YLLVYPQRPLLTTKTIE
Sbjct: 686  VVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYPQRPLLTTKTIE 745

Query: 1488 LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAISQKYENGT 1309
            LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV KK S+++QKYEN T
Sbjct: 746  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFKKYSSVNQKYENNT 805

Query: 1308 SDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKITRGPVTSP-AGLSD 1132
            +DRI+RP R       MQILDDDGLAAPGEIIRP+DIY+NK+SP I +G   SP  G+ D
Sbjct: 806  ADRIVRPNRNEDFTGNMQILDDDGLAAPGEIIRPNDIYVNKQSPIIMKG---SPLPGIPD 862

Query: 1131 SDYKPSRQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSSRHGQKGV 952
            + Y+P RQ +KG EGE  VVDRVAL +DKN+ LCIK++IR TRRPE+GDKFSSRHGQKGV
Sbjct: 863  NAYRPCRQIFKGSEGEPTVVDRVALSTDKNDCLCIKFLIRQTRRPELGDKFSSRHGQKGV 922

Query: 951  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFHYGSAFGE 772
            CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGE
Sbjct: 923  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 982

Query: 771  PSGHADRVEAISETLVKHGFSYNGKDFLYSGITGMPLQAYIFMGPIYYQKLKHMVLDKMH 592
            PSGHAD+V+AISETL+K GFSYNGKDFLYSGITG PLQAYIFMGPIYYQKLKHMVLDKMH
Sbjct: 983  PSGHADKVDAISETLIKRGFSYNGKDFLYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1042

Query: 591  ARGSGPRVMITRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCR 412
            ARGSGPRVM+TRQPTEGR+RNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCR
Sbjct: 1043 ARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCR 1102

Query: 411  KCGLLGYYNYKLKKGICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPR 262
             CGLLGYYN+KLK GICS+CKNGDNISTMKLPYACKLLIQELQSMNIVPR
Sbjct: 1103 VCGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLLIQELQSMNIVPR 1152


>ref|XP_006362278.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
            tuberosum]
          Length = 1151

 Score = 1815 bits (4702), Expect = 0.0
 Identities = 910/1133 (80%), Positives = 1006/1133 (88%), Gaps = 7/1133 (0%)
 Frame = -2

Query: 3639 GIDKRFLAAPMKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEIKKIVSANQWIRSKV 3460
            GIDK++LA+P+K++VDK+QL+PEFLKVRGLVKQHL SFNY V+T+IKKIV AN  IRS  
Sbjct: 19   GIDKQYLASPIKNSVDKYQLIPEFLKVRGLVKQHLASFNYLVKTDIKKIVRANHEIRSST 78

Query: 3459 -DERVYLRYTDVRIGEPSMIIDGVTEKLTPHKCRLSDMTYAAPIFVSIEYR-GQSQSTDP 3286
             D  +YLRY DVRIGEPSM  DGV EKL+P KCRL+D+TYAAPIFV+++Y   ++     
Sbjct: 79   RDPNIYLRYRDVRIGEPSMTYDGVREKLSPQKCRLADLTYAAPIFVTVDYTMTRNGQISM 138

Query: 3285 LKKKDVIIGRMPIMLRSRSCVLYGKDEEELANLGECPLDPGGYFVIKGTEKVILIQEQLS 3106
            L +KDV+I RMPIMLRS  CVLY KDEE+LA LGECPLDPGGYF++ G EKVILIQEQLS
Sbjct: 139  LTQKDVVIARMPIMLRSCLCVLYEKDEEQLAKLGECPLDPGGYFIVNGREKVILIQEQLS 198

Query: 3105 KNRIIIDIDKKGCVQXXXXXXXXXXXXXXVIKMEKEKIYLYLNQFKNKVPIMVVMKAMGM 2926
            KNRIIID D+KGCVQ              +IKMEKEK+YL LN FK KVPIMVVMKAMGM
Sbjct: 199  KNRIIIDTDRKGCVQASVICSTEKTKSKTIIKMEKEKVYLELNMFKTKVPIMVVMKAMGM 258

Query: 2925 ESDQEVVQMIGRDPRYSALLLPSIEECAKANVYMQQEALDYLE--KQVKQLPYHYAPVEE 2752
            ESDQEVVQMIGRDPRYSALLLPSIEECA   +Y Q +AL++LE  K +    Y+ APVE+
Sbjct: 259  ESDQEVVQMIGRDPRYSALLLPSIEECADLKLYTQHQALEFLESDKMLTMPSYYNAPVEK 318

Query: 2751 --RALSILADIFIANIPVREKNFRSKCIYVAVMLRRMMEAILNKDAMDDKDYVGNKRLEL 2578
              RALSIL D+F+A++PV + NFR KCIYVAVM+RR+MEAILNKDAMDDKDYVGNKRLEL
Sbjct: 319  GARALSILRDMFLAHVPVHQHNFRKKCIYVAVMMRRVMEAILNKDAMDDKDYVGNKRLEL 378

Query: 2577 SGQMLSLLFEDLFKTMNDEVKKTIDAILDKPSRSSRFDISQYIVKDS-ITVGLERSLSTG 2401
            SGQ+LSLLFEDLFKTMNDEV++  DA     S+SS  D+  ++ K + ITV L+R+LSTG
Sbjct: 379  SGQLLSLLFEDLFKTMNDEVRREFDA----SSKSS--DLLYHVKKSNRITVELQRTLSTG 432

Query: 2400 NWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPC 2221
            NWD+KRFRMHRKGMT+V+ARLSYIGTLG+MTKI PQFEKSRKVSGPRALQPSQ+GM+CPC
Sbjct: 433  NWDIKRFRMHRKGMTEVLARLSYIGTLGYMTKIKPQFEKSRKVSGPRALQPSQFGMICPC 492

Query: 2220 DTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHSPNSFLIILN 2041
            DTPEGEACGLVKNLALMTHVTTDE+  PI+SLCY LGVEDLE LS  ELH+PNS+LIILN
Sbjct: 493  DTPEGEACGLVKNLALMTHVTTDEDARPIMSLCYDLGVEDLEQLSAAELHTPNSYLIILN 552

Query: 2040 GLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNEKQRCVYIASDGGRVCRPLVIADKG 1861
            GLILGKH+ PQRFAN MRKLRRAG+I EFVSI+VN+KQ CVYIASDGGRVCRPLVIA+KG
Sbjct: 553  GLILGKHKSPQRFANGMRKLRRAGRIREFVSIFVNDKQCCVYIASDGGRVCRPLVIAEKG 612

Query: 1860 VSRIKEPHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYDSEATPETTHIEIEPF 1681
            VSRIKE HM EL+DGVR+F+SFLR+GLIEYLDVNEENN+LIALY+ EATP+TTHIEIEPF
Sbjct: 613  VSRIKEHHMNELRDGVRDFNSFLRDGLIEYLDVNEENNSLIALYEKEATPDTTHIEIEPF 672

Query: 1680 TILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTT 1501
            TILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD L+YLLVYPQRPLLTT
Sbjct: 673  TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDGLLYLLVYPQRPLLTT 732

Query: 1500 KTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAISQKY 1321
            +TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKK +AI QKY
Sbjct: 733  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKYAAICQKY 792

Query: 1320 ENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKITRGPVTSPAG 1141
            +N TSDR+I+PQRQG +AE+MQILDDDGLA+PGEIIR  DIYINKESP +T   VTSP G
Sbjct: 793  KNLTSDRLIKPQRQGSEAEKMQILDDDGLASPGEIIRNRDIYINKESPTVTITQVTSPMG 852

Query: 1140 LSDSDYKPSRQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSSRHGQ 961
            L DS YK SRQTYKG EGE  V+DRVAL SD+NNNL IK+MIR TRRPE+GDKFSSRHGQ
Sbjct: 853  LPDSAYKSSRQTYKGTEGEPTVIDRVALHSDENNNLSIKFMIRQTRRPEIGDKFSSRHGQ 912

Query: 960  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFHYGSA 781
            KGVCG IVQQED PFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVS GRFHYGSA
Sbjct: 913  KGVCGIIVQQEDLPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSA 972

Query: 780  FGEPSGHADRVEAISETLVKHGFSYNGKDFLYSGITGMPLQAYIFMGPIYYQKLKHMVLD 601
            FGEPSGHAD V+AISETLVKHGFSYNGKDF+YSGITGMPLQAYIFMGPIYYQKLKHMVLD
Sbjct: 973  FGEPSGHADTVDAISETLVKHGFSYNGKDFIYSGITGMPLQAYIFMGPIYYQKLKHMVLD 1032

Query: 600  KMHARGSGPRVMITRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQ 421
            KMHARGSGPRVM+TRQPTEGRSRNGGLRVGEMERDCLIAYGASMLI+ERLM+SSDPFE Q
Sbjct: 1033 KMHARGSGPRVMMTRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIHERLMLSSDPFEAQ 1092

Query: 420  VCRKCGLLGYYNYKLKKGICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPR 262
            VCRKCGLLGYYNYKLK GICS CKNG+N+ST+KLPYACKLL QELQSMNIVPR
Sbjct: 1093 VCRKCGLLGYYNYKLKIGICSMCKNGENMSTLKLPYACKLLFQELQSMNIVPR 1145


>ref|XP_004249177.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
            lycopersicum]
          Length = 1149

 Score = 1802 bits (4668), Expect = 0.0
 Identities = 904/1132 (79%), Positives = 1000/1132 (88%), Gaps = 6/1132 (0%)
 Frame = -2

Query: 3639 GIDKRFLAAPMKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEIKKIVSANQWIRSKV 3460
            GIDK++LA+P+K++VDK+QL+PEFLKVRGLVKQHL SFNY V+T+I+KIV AN  IRS  
Sbjct: 19   GIDKQYLASPIKNSVDKYQLIPEFLKVRGLVKQHLASFNYLVKTDIRKIVRANHEIRSTR 78

Query: 3459 DERVYLRYTDVRIGEPSMIIDGVTEKLTPHKCRLSDMTYAAPIFVSIEYRG-QSQSTDPL 3283
            D  ++LRY DVRIGEPSM  DGV EKL+P KCRL+D+TYAAPIFV+++Y   ++      
Sbjct: 79   DPNIFLRYRDVRIGEPSMTYDGVREKLSPQKCRLADLTYAAPIFVTVDYTMIRNGQISMA 138

Query: 3282 KKKDVIIGRMPIMLRSRSCVLYGKDEEELANLGECPLDPGGYFVIKGTEKVILIQEQLSK 3103
             +KDV+IGRMPIMLRS  CVLY KDEE+LA LGECPLDPGGYFV+ G EKVILIQEQLSK
Sbjct: 139  TQKDVVIGRMPIMLRSCLCVLYEKDEEQLAKLGECPLDPGGYFVVNGREKVILIQEQLSK 198

Query: 3102 NRIIIDIDKKGCVQXXXXXXXXXXXXXXVIKMEKEKIYLYLNQFKNKVPIMVVMKAMGME 2923
            NRIIID D+KGCVQ              +IKMEKEK+YL LN FK KVPIMVVMKAMGME
Sbjct: 199  NRIIIDTDRKGCVQASVICSTEKTKSKTIIKMEKEKVYLELNMFKTKVPIMVVMKAMGME 258

Query: 2922 SDQEVVQMIGRDPRYSALLLPSIEECAKANVYMQQEALDYLE--KQVKQLPYHYAPVEE- 2752
            SDQEVVQMIGRDPRYSALLLPSIEECA   +Y Q +AL++LE  K  +   Y   PVE+ 
Sbjct: 259  SDQEVVQMIGRDPRYSALLLPSIEECADLKLYTQHQALEFLENDKMFRMPSYSTGPVEKG 318

Query: 2751 -RALSILADIFIANIPVREKNFRSKCIYVAVMLRRMMEAILNKDAMDDKDYVGNKRLELS 2575
             RALSIL D+F+A++PV + NFR KCIYVAVM+RRMMEAILNKDAMDDKDYVGNKRLELS
Sbjct: 319  ARALSILRDMFLAHVPVNQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELS 378

Query: 2574 GQMLSLLFEDLFKTMNDEVKKTIDAILDKPSRSSRFDISQYIVKDS-ITVGLERSLSTGN 2398
            GQ+LSLLFEDLFK+MNDE ++  DA   KPS     D+  ++ + + ITV L+R+LSTGN
Sbjct: 379  GQLLSLLFEDLFKSMNDEARREFDAY-SKPS-----DLLYHVKRSNRITVELQRALSTGN 432

Query: 2397 WDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCD 2218
            WD+KRFRMHRKGMT+V+ARLSYIGTLG+MTKI PQFEKSRKVSGPRALQPSQ+GM+CPCD
Sbjct: 433  WDIKRFRMHRKGMTEVLARLSYIGTLGYMTKIKPQFEKSRKVSGPRALQPSQFGMICPCD 492

Query: 2217 TPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHSPNSFLIILNG 2038
            TPEGEACGLVKNLALMTHVTTDE+E PI+SLCY LGVEDLE LS  ELH+PNS+LIILNG
Sbjct: 493  TPEGEACGLVKNLALMTHVTTDEDERPIMSLCYDLGVEDLEQLSAAELHTPNSYLIILNG 552

Query: 2037 LILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNEKQRCVYIASDGGRVCRPLVIADKGV 1858
            LILGKHR PQRFAN MRKLRRAG+I EFVSI+VN+KQ CVYIASDGGRVCRPLVIA+KGV
Sbjct: 553  LILGKHRSPQRFANGMRKLRRAGQIREFVSIFVNDKQCCVYIASDGGRVCRPLVIAEKGV 612

Query: 1857 SRIKEPHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYDSEATPETTHIEIEPFT 1678
            SRIKE HM EL+DGVR+F+SFLR+GLIEYLDVNEENN+LIALY+ EATP+TTHIEIEPFT
Sbjct: 613  SRIKELHMNELRDGVRDFNSFLRDGLIEYLDVNEENNSLIALYEKEATPDTTHIEIEPFT 672

Query: 1677 ILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTK 1498
            ILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD L+YLLVYPQRPLLTT+
Sbjct: 673  ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDGLLYLLVYPQRPLLTTR 732

Query: 1497 TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAISQKYE 1318
            TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKK +A+ QKY+
Sbjct: 733  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKHAAMCQKYK 792

Query: 1317 NGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKITRGPVTSPAGL 1138
            N TSDR+I+PQRQGY+AER  ILDDDGLA+PGEIIR  DIYINKESP +T   VTSP  L
Sbjct: 793  NLTSDRLIKPQRQGYEAER--ILDDDGLASPGEIIRNGDIYINKESPTVTVATVTSPMDL 850

Query: 1137 SDSDYKPSRQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSSRHGQK 958
             DS Y+ SRQTYKG EGE  V+DRVAL SD+NNNL IK+MIR TRRPE+GDKFSSRHGQK
Sbjct: 851  PDSAYRLSRQTYKGTEGEPTVIDRVALHSDENNNLSIKFMIRQTRRPEIGDKFSSRHGQK 910

Query: 957  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFHYGSAF 778
            GVCG IVQQED PFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVS GRFHYGSAF
Sbjct: 911  GVCGIIVQQEDLPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAF 970

Query: 777  GEPSGHADRVEAISETLVKHGFSYNGKDFLYSGITGMPLQAYIFMGPIYYQKLKHMVLDK 598
            GEPSGHAD V+AISETLVKHGF YNGKDF+YSGITGMPLQAYIFMGPIYYQKLKHMV+DK
Sbjct: 971  GEPSGHADTVDAISETLVKHGFCYNGKDFIYSGITGMPLQAYIFMGPIYYQKLKHMVVDK 1030

Query: 597  MHARGSGPRVMITRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQV 418
            MHARGSGPRVM+TRQPTEGRSRNGGLRVGEMERDCLIAYGASMLI+ERLM+SSDPFE QV
Sbjct: 1031 MHARGSGPRVMMTRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIHERLMLSSDPFEAQV 1090

Query: 417  CRKCGLLGYYNYKLKKGICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPR 262
            CRKCGLLGYYNYKLK GICS CKNG+N+STMKLPYACKLL QELQSMNIVPR
Sbjct: 1091 CRKCGLLGYYNYKLKIGICSMCKNGENMSTMKLPYACKLLFQELQSMNIVPR 1142


>ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X3 [Citrus sinensis]
          Length = 1058

 Score = 1782 bits (4615), Expect = 0.0
 Identities = 871/1052 (82%), Positives = 958/1052 (91%), Gaps = 3/1052 (0%)
 Frame = -2

Query: 3408 MIIDGVTEKLTPHKCRLSDMTYAAPIFVSIEY-RGQSQSTDPLKKKDVIIGRMPIMLRSR 3232
            M +DGV+EKL PH CRLSDMTYAAPI V+IEY +G       ++K DV+IGR+PIMLRS 
Sbjct: 1    MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSC 60

Query: 3231 SCVLYGKDEEELANLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDIDKKGCVQXXX 3052
             CVLYGKDE ELA LGECPLDPGGYF+IKGTEKV+LIQEQLSKNR+IID DKKG +    
Sbjct: 61   RCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASV 120

Query: 3051 XXXXXXXXXXXVIKMEKEKIYLYLNQFKNKVPIMVVMKAMGMESDQEVVQMIGRDPRYSA 2872
                       VI+MEK K+YL LNQF  K+PIMVVMKAMG+ESDQEVVQM+GRDPRYSA
Sbjct: 121  TSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGIESDQEVVQMVGRDPRYSA 180

Query: 2871 LLLPSIEECAKANVYMQQEALDYLEKQVKQLPYHYAPV--EERALSILADIFIANIPVRE 2698
            LLLPSIEECA  ++Y Q++AL+YLE +VK+  +   P   E RA SIL D+F+AN+PV  
Sbjct: 181  LLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHN 240

Query: 2697 KNFRSKCIYVAVMLRRMMEAILNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEV 2518
             NFR KC YVAVMLRRM+EA+LNKDAMDDKDYVGNKRLELSGQ++SLLFEDLFKTM  EV
Sbjct: 241  NNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV 300

Query: 2517 KKTIDAILDKPSRSSRFDISQYIVKDSITVGLERSLSTGNWDVKRFRMHRKGMTQVVARL 2338
            +KT+D IL KPSRSSRFD+SQ+IV+DSITVGLER+LSTGN+DVKRF+MHRKGMTQV+ARL
Sbjct: 301  QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARL 360

Query: 2337 SYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 2158
            S+IGTLGHMT++SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT
Sbjct: 361  SFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 420

Query: 2157 TDEEEGPIVSLCYCLGVEDLELLSGEELHSPNSFLIILNGLILGKHRKPQRFANAMRKLR 1978
            TDEEEGP++SLCYCLGVEDLELLSGEELH+PNSFL+I NGLILGKHR+P+ FA+ MRKLR
Sbjct: 421  TDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLR 480

Query: 1977 RAGKIGEFVSIYVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEPHMKELKDGVRNFDS 1798
            RAGKIGEFVS++VNEKQRCVYIASDGGRVCRPLVIADKG+SRIKE HMKEL DGVR+FD 
Sbjct: 481  RAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDD 540

Query: 1797 FLREGLIEYLDVNEENNALIALYDSEATPETTHIEIEPFTILGVCAGLIPFPHHNQSPRN 1618
            FLREGLIEYLDVNEENNALIALY+ +ATP+TTHIEIEPFTILGV AGLIP+PHHNQSPRN
Sbjct: 541  FLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRN 600

Query: 1617 TYQCAMGKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAV 1438
            TYQCAMGKQAMGNIA+NQLCRMD+L+YLLVYPQRPLLTT+TIELVGYDKLGAGQNATVAV
Sbjct: 601  TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 660

Query: 1437 MSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAISQKYENGTSDRIIRPQRQGYDAERM 1258
            MSYSGYDIEDAIVMNKSSLDRGFGRCIV+KK +AI+QKY N TSDRI+RP R G  AERM
Sbjct: 661  MSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERM 720

Query: 1257 QILDDDGLAAPGEIIRPHDIYINKESPKITRGPVTSPAGLSDSDYKPSRQTYKGPEGETA 1078
            QILDDDGLAAPGEII+P+D+YINKESP  TRG + SP G +DS Y+ +RQTYKGP+GET 
Sbjct: 721  QILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETC 780

Query: 1077 VVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGIC 898
            VVDRVALCSDKN +LCIK++IRHTRRPE+GDKFSSRHGQKGVCGTIVQQEDFPFSERGIC
Sbjct: 781  VVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGIC 840

Query: 897  PDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFHYGSAFGEPSGHADRVEAISETLVKH 718
            PDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGEPSGHAD VE+ISETLVKH
Sbjct: 841  PDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKH 900

Query: 717  GFSYNGKDFLYSGITGMPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMITRQPTEGR 538
            GFSYNGKD +YSGITG PLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM+TRQPTEGR
Sbjct: 901  GFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGR 960

Query: 537  SRNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRKCGLLGYYNYKLKKGICS 358
            +RNGGLRVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQVCR CGLLGYYN+KLK GICS
Sbjct: 961  ARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICS 1020

Query: 357  TCKNGDNISTMKLPYACKLLIQELQSMNIVPR 262
            TCKNGDNIS+MKLPYACKLLIQELQSMNIVPR
Sbjct: 1021 TCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1052


>ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutrema salsugineum]
            gi|557099252|gb|ESQ39616.1| hypothetical protein
            EUTSA_v10000748mg [Eutrema salsugineum]
          Length = 1164

 Score = 1779 bits (4609), Expect = 0.0
 Identities = 878/1143 (76%), Positives = 994/1143 (86%), Gaps = 18/1143 (1%)
 Frame = -2

Query: 3636 IDKRFLAAPMKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEIKKIVSANQWIRSKVD 3457
            +D++ L+AP+KS  DKFQL+PEFLKVRGLVKQHLDSFNYFV   IKKIV AN  I S +D
Sbjct: 17   VDRQKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFVNVGIKKIVRANSLITSSLD 76

Query: 3456 ERVYLRYTDVRIGEPSMIIDGVTEKLTPHKCRLSDMTYAAPIFVSIEY-RGQSQSTDPLK 3280
              +YLR+ +VR+GEPS++   + E++ PH CRL+DMTYAAPI+V+IEY  G    T    
Sbjct: 77   PEIYLRFKEVRVGEPSILNVNMAEEINPHMCRLADMTYAAPIYVNIEYAHGSHGKTQHSA 136

Query: 3279 KKDVIIGRMPIMLRSRSCVLYGKDEEELANLGECPLDPGGYFVIKGTEKVILIQEQLSKN 3100
            K +VIIGRMPIMLRS  CVL+GKDEEELA LGECPLDPGGYFVIKGTEKV+LIQEQLSKN
Sbjct: 137  KDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFVIKGTEKVLLIQEQLSKN 196

Query: 3099 RIIIDIDKKGCVQXXXXXXXXXXXXXXVIKMEKEKIYLYLNQFKNKVPIMVVMKAMGMES 2920
            RIIID DKKG +               VI+MEK KIYL+L+QF  K+PI++V+KAMGMES
Sbjct: 197  RIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKGKIYLFLHQFVKKIPIIIVLKAMGMES 256

Query: 2919 DQEVVQMIGRDPRYSALLLPSIEECAKANVYMQQEALDYLEKQVKQLPYHYAPVEE-RAL 2743
            DQE+VQM+GRDPR+SA LLPSIEEC    V  +++ALDYLE +VK+  Y   P ++ RAL
Sbjct: 257  DQEIVQMVGRDPRFSASLLPSIEECVSEGVNTRKQALDYLEAKVKKTSYGPPPEKDGRAL 316

Query: 2742 SILADIFIANIPVREKNFRSKCIYVAVMLRRMMEAILNKDAMDDKDYVGNKRLELSGQML 2563
             IL D+F+A++PVR+ NFR KC YV VMLRRM+EA+LNKDAMDDKDYVGNKRLELSGQ++
Sbjct: 317  YILRDVFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLI 376

Query: 2562 SLLFEDLFKTMNDEVKKTIDAILDKPSRSSRFDISQYIVKD---SITVGLERSLSTGNWD 2392
            SLLFEDLFKTM  E  K +D IL KP+R+SRFD SQ +  +   +I+ GLER+LSTGN+D
Sbjct: 377  SLLFEDLFKTMITEAVKKVDGILQKPNRASRFDFSQCLTGEKNHNISFGLERTLSTGNFD 436

Query: 2391 VKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTP 2212
            +KRFRMHRKGMTQV+ RLS+IG+LG +TKISPQFEKSRKVSGPR+LQPSQWGMLCPCDTP
Sbjct: 437  IKRFRMHRKGMTQVLTRLSFIGSLGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTP 496

Query: 2211 EGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHSPNSFLIILNGLI 2032
            EGE+CGLVKNLALMTHVTTDEEEGP+V++CY LGV DLE+LS EELH+P+SFL+I NGLI
Sbjct: 497  EGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVIFNGLI 556

Query: 2031 LGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNEKQRCVYIASDGGRVCRPLVIADKGVSR 1852
            LGKHR+PQ FAN++R+LRRAGKIGEFVS+++NEKQ CVY+ASDGGRVCRPLVIADKGVSR
Sbjct: 557  LGKHRRPQYFANSLRRLRRAGKIGEFVSVFINEKQHCVYVASDGGRVCRPLVIADKGVSR 616

Query: 1851 IKEPHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYDSEATPE------------ 1708
            +K+ HMKEL+DGVR FD F+R+GLIEYLDVNEENNALIALY+S+AT E            
Sbjct: 617  VKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALIALYESDATSEMAETAEAAKIRE 676

Query: 1707 -TTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLIYLL 1531
             TTHIEIEPFTILGV AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMDTL+YLL
Sbjct: 677  GTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLL 736

Query: 1530 VYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVM 1351
            VYPQRPLLTT+TIELVGYDKLGAGQNATVAVMS +GYDIEDAIVMNK+SLDRGFGRCIVM
Sbjct: 737  VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSNTGYDIEDAIVMNKASLDRGFGRCIVM 796

Query: 1350 KKMSAISQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKI 1171
            KK+ A  QKY N   DRI+RPQR G DAE+MQILDDDG+AAPGEIIRP+D+YINK+ P  
Sbjct: 797  KKIVATCQKYGNDAVDRILRPQRTGPDAEKMQILDDDGIAAPGEIIRPNDVYINKQIPVD 856

Query: 1170 TRGPVTSPAGLSDSDYKPSRQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEV 991
            TR  +TSP  LSDS Y+P+R+ +KGPEGET VVDRVALCSDKN NLCIKY+IRHTRRPE+
Sbjct: 857  TRDNITSP--LSDSQYRPAREYFKGPEGETQVVDRVALCSDKNGNLCIKYIIRHTRRPEL 914

Query: 990  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV 811
            GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV
Sbjct: 915  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV 974

Query: 810  SSGRFHYGSAFGEPSGHADRVEAISETLVKHGFSYNGKDFLYSGITGMPLQAYIFMGPIY 631
             SGRFHYGSAFGE SGHAD+VE IS TLVKHGFSY+GKD LYSG++G PLQ Y+FMGPIY
Sbjct: 975  CSGRFHYGSAFGERSGHADKVETISATLVKHGFSYSGKDLLYSGLSGEPLQTYVFMGPIY 1034

Query: 630  YQKLKHMVLDKMHARGSGPRVMITRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERL 451
            YQKLKHMVLDKMHARGSGPRVM+TRQPTEG+S+NGGLRVGEMERDCLIAYGASMLIYERL
Sbjct: 1035 YQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERL 1094

Query: 450  MISSDPFEVQVCRKCGLLGYYNYKLKKGICSTCKNGDNISTMKLPYACKLLIQELQSMNI 271
            MISSDPFEVQVCR CGLLGYYNYKLKK  CSTCKNGDNI+TMKLPYACKLL QELQSMN+
Sbjct: 1095 MISSDPFEVQVCRTCGLLGYYNYKLKKAFCSTCKNGDNIATMKLPYACKLLFQELQSMNV 1154

Query: 270  VPR 262
            VPR
Sbjct: 1155 VPR 1157


>ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
            lyrata] gi|297309357|gb|EFH39781.1| hypothetical protein
            ARALYDRAFT_917015 [Arabidopsis lyrata subsp. lyrata]
          Length = 1165

 Score = 1778 bits (4605), Expect = 0.0
 Identities = 886/1157 (76%), Positives = 1003/1157 (86%), Gaps = 21/1157 (1%)
 Frame = -2

Query: 3669 QEENDDTNVLG-IDKRFLAAPMKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEIKKI 3493
            QE+ D TN    IDK  L+AP+KS  DKFQL+PEFLKVRGLVKQHLDSFNYF+   IKKI
Sbjct: 5    QEDLDLTNDDNFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIKKI 64

Query: 3492 VSANQWIRSKVDERVYLRYTDVRIGEPSMIIDGVTEKLTPHKCRLSDMTYAAPIFVSIEY 3313
            V AN  I S  D  +YLR+ +VR+GEPS++   ++E++ PH CRL+DMTYAAPI+V+IEY
Sbjct: 65   VHANCRIASVTDPSIYLRFKNVRVGEPSIMNINISEEINPHMCRLADMTYAAPIYVNIEY 124

Query: 3312 -RGQSQSTDPLKKKDVIIGRMPIMLRSRSCVLYGKDEEELANLGECPLDPGGYFVIKGTE 3136
              G         K D IIGRMPIMLRS  CVL+GKDEEELA LGECPLDPGGYFVIKGTE
Sbjct: 125  VHGSHGKKATSVKNDFIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFVIKGTE 184

Query: 3135 KVILIQEQLSKNRIIIDIDKKGCVQXXXXXXXXXXXXXXVIKMEKEKIYLYLNQFKNKVP 2956
            KV+LIQEQLSKNRIIID DKKG +               VI+MEKEKIYL+L+QF  K+P
Sbjct: 185  KVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHQFVKKIP 244

Query: 2955 IMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYMQQEALDYLEKQVKQLP 2776
            I++V+KAMGMESDQE+VQM+GRDPR+SA LLPSIEEC    V  Q++ALDYLE +VK+  
Sbjct: 245  IVIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKTS 304

Query: 2775 YHYAPVEE-RALSILADIFIANIPVREKNFRSKCIYVAVMLRRMMEAILNKDAMDDKDYV 2599
            Y   P ++ RAL IL D+F+A++PVR+ NFR KC YV VMLRRM+EA+LNKD+MDDKDYV
Sbjct: 305  YGPPPEKDGRALYILRDLFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKDSMDDKDYV 364

Query: 2598 GNKRLELSGQMLSLLFEDLFKTMNDEVKKTIDAILDKPSRSSRFDISQYIV----KDSIT 2431
            GNKRLELSGQ++SLLFEDLFKTM  E  K +DAIL KPSR+SRFD SQY+     +++I+
Sbjct: 365  GNKRLELSGQLMSLLFEDLFKTMLSEAIKKVDAILSKPSRASRFDFSQYLTTGDSQNTIS 424

Query: 2430 VGLERSLSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQ 2251
            VGLER+LSTGN+D+KRFRMHRKGMTQV+ RLS+IG+LG +TKISPQFEKSRKVSGPR+LQ
Sbjct: 425  VGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIGSLGFITKISPQFEKSRKVSGPRSLQ 484

Query: 2250 PSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELH 2071
            PSQWGMLCPCDTPEGE+CGLVKNLALMTHVTTDEEEGP+V++CY LGV DLE+LS EELH
Sbjct: 485  PSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELH 544

Query: 2070 SPNSFLIILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNEKQRCVYIASDGGRV 1891
            +P+SFL+ILNGLILGKHR+PQ FAN++R+LRRAGKIGEFVS++ NEKQ CVY+ASDGGRV
Sbjct: 545  TPDSFLVILNGLILGKHRRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDGGRV 604

Query: 1890 CRPLVIADKGVSRIKEPHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYDSEATP 1711
            CRPLVIADKG+SR+K+ HMKEL+DGVR FD F+R+GLIEYLDVNEENNALIALY+SEAT 
Sbjct: 605  CRPLVIADKGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALIALYESEATT 664

Query: 1710 E-------------TTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAY 1570
            E             TTHIEIEPFTILGV AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAY
Sbjct: 665  ELDEGAEAAKIKADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAY 724

Query: 1569 NQLCRMDTLIYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 1390
            NQL RMDTL+YLLVYPQRPLLTT+TIELVGYDKLGAGQNATVAVMS SGYDIEDAIVMNK
Sbjct: 725  NQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSNSGYDIEDAIVMNK 784

Query: 1389 SSLDRGFGRCIVMKKMSAISQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIR 1210
            SSLDRGFGRCIVMKK+ A  QKYENGT DRI+ PQR G DAE+MQILDDDG+A+PGEIIR
Sbjct: 785  SSLDRGFGRCIVMKKIVATCQKYENGTVDRILMPQRTGPDAEKMQILDDDGIASPGEIIR 844

Query: 1209 PHDIYINKESPKIT-RGPVTSPAGLSDSDYKPSRQTYKGPEGETAVVDRVALCSDKNNNL 1033
            P+D+YI K+ P  T R  +TSP  LSDS Y+P+R+ +KGPEGET VVDRVALCSDK+ +L
Sbjct: 845  PNDVYIYKQIPVCTTRDKITSP--LSDSQYRPAREFFKGPEGETQVVDRVALCSDKSGSL 902

Query: 1032 CIKYMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 853
            CIKY+IRHTRRPE+GDKFSSRHGQKGVCGTI+QQEDFPFSE GICPDLIMNPHGFPSRMT
Sbjct: 903  CIKYIIRHTRRPELGDKFSSRHGQKGVCGTIIQQEDFPFSELGICPDLIMNPHGFPSRMT 962

Query: 852  VGKMIELLGSKAGVSSGRFHYGSAFGEPSGHADRVEAISETLVKHGFSYNGKDFLYSGIT 673
            VGKMIELLGSKAGVS GRFHYGSAFGE SGHAD+VE IS+TLV  GFSY+GKD LYSG++
Sbjct: 963  VGKMIELLGSKAGVSCGRFHYGSAFGERSGHADKVETISKTLVDKGFSYSGKDLLYSGLS 1022

Query: 672  GMPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMITRQPTEGRSRNGGLRVGEMERDC 493
            G PL+AYIFMGPIYYQKLKHMVLDKMHARGSGPRVM+TRQPTEG+S+NGGLRVGEMERDC
Sbjct: 1023 GEPLEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDC 1082

Query: 492  LIAYGASMLIYERLMISSDPFEVQVCRKCGLLGYYNYKLKKGICSTCKNGDNISTMKLPY 313
            LIAYGASMLIYERLMISSDPFEVQVCR CGLLGYYNYKLKK +CSTCKNGDNI+TMKLPY
Sbjct: 1083 LIAYGASMLIYERLMISSDPFEVQVCRACGLLGYYNYKLKKAVCSTCKNGDNIATMKLPY 1142

Query: 312  ACKLLIQELQSMNIVPR 262
            ACKLL QELQSMN+VPR
Sbjct: 1143 ACKLLFQELQSMNVVPR 1159


>gb|EPS66119.1| hypothetical protein M569_08657, partial [Genlisea aurea]
          Length = 1118

 Score = 1767 bits (4577), Expect = 0.0
 Identities = 874/1122 (77%), Positives = 982/1122 (87%), Gaps = 2/1122 (0%)
 Frame = -2

Query: 3621 LAAPMKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEIKKIVSANQWIRSKVDERVYL 3442
            L AP+K+AVDKF+L+PEFLKVRGLVKQHLDSFNYFV  +IKKIV  N  I S +DE+ YL
Sbjct: 3    LVAPVKNAVDKFRLVPEFLKVRGLVKQHLDSFNYFVEKQIKKIVQVNNRIESAIDEKCYL 62

Query: 3441 RYTDVRIGEPSMIIDGVTEKLTPHKCRLSDMTYAAPIFVSIEYRGQSQSTDPLKKK-DVI 3265
             Y +V IGEPS++++ V EK+TP KCRLSDMTYAAPI+V+IE+  +S  +   ++K +++
Sbjct: 63   SYEEVHIGEPSILVNDVWEKITPQKCRLSDMTYAAPIYVTIEFTTESNGSKTTRRKPNIV 122

Query: 3264 IGRMPIMLRSRSCVLYGKDEEELANLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIID 3085
            IG +PIMLRSRSC+LY +DE+ELA  GECPLDPGGYF+IKGTEKVIL+ EQLSKNRIIID
Sbjct: 123  IGSLPIMLRSRSCILYERDEDELARYGECPLDPGGYFIIKGTEKVILMHEQLSKNRIIID 182

Query: 3084 IDKKGCVQXXXXXXXXXXXXXXVIKMEKEKIYLYLNQFKNKVPIMVVMKAMGMESDQEVV 2905
             D KGCVQ              VIKMEK KIYLYLNQF  KVPI++V+KAMG+ +DQE+V
Sbjct: 183  TDNKGCVQATVTSTTETIKSKTVIKMEKGKIYLYLNQFTTKVPIVIVIKAMGVVTDQEIV 242

Query: 2904 QMIGRDPRYSALLLPSIEECAKANVYMQQEALDYLEKQVKQLPYHYAPVEERALSILADI 2725
            QMIGRDPR+S LLLPS+E+C  A+V  Q +A+++LE++           E RALSIL DI
Sbjct: 243  QMIGRDPRFSELLLPSLEDCVAADVNTQYQAIEFLEEK-----------EGRALSILRDI 291

Query: 2724 FIANIPVREKNFRSKCIYVAVMLRRMMEAILNKDAMDDKDYVGNKRLELSGQMLSLLFED 2545
            FIAN+PV E NFR KC+YVAVMLRRMMEAI+NKD MDDKDYVGNKRLELSGQMLSLLFED
Sbjct: 292  FIANVPVHENNFRPKCLYVAVMLRRMMEAIINKDTMDDKDYVGNKRLELSGQMLSLLFED 351

Query: 2544 LFKTMNDEVKKTIDAILDKPSRSSRFDISQYIVKDSITVGLERSLSTGNWDVKRFRMHRK 2365
            LFKTMND  ++  D IL K  R+++FD SQ+I+  +IT GLERSLSTGNWD+KRFRMHRK
Sbjct: 352  LFKTMNDISRQKADKILSK-KRTNKFDFSQHIIHSTITDGLERSLSTGNWDIKRFRMHRK 410

Query: 2364 GMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVK 2185
            GMTQ + RLSYI TLG MTKI+P FEKSRKVSGPRALQPSQWGMLCPCDTPEGE+CGLVK
Sbjct: 411  GMTQALTRLSYIETLGRMTKINPHFEKSRKVSGPRALQPSQWGMLCPCDTPEGESCGLVK 470

Query: 2184 NLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHSPNSFLIILNGLILGKHRKPQR 2005
            NLALMTHVTTDE+E PI+SLCY LG+EDLEL+S EELH+P+ FLI+LNGLILGKHR+PQ+
Sbjct: 471  NLALMTHVTTDEDEEPIISLCYSLGMEDLELVSAEELHNPDCFLIMLNGLILGKHRQPQK 530

Query: 2004 FANAMRKLRRAGKIGEFVSIYVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEPHMKEL 1825
            FA+ MR LRRAG+IGEF+SI+VNEKQ+ V IASDGGRVCRPLVIADKGVSRIK+ HMKEL
Sbjct: 531  FADTMRNLRRAGRIGEFISIFVNEKQQSVNIASDGGRVCRPLVIADKGVSRIKDRHMKEL 590

Query: 1824 KDGVRNFDSFLREGLIEYLDVNEENNALIALYDSEATPETTHIEIEPFTILGVCAGLIPF 1645
            KDGVRNF+SF+REGLIEYLDVNEENNALIALY+  A   TTHIEIEPFTILGVCAGLIP+
Sbjct: 591  KDGVRNFESFVREGLIEYLDVNEENNALIALYEENAKDGTTHIEIEPFTILGVCAGLIPY 650

Query: 1644 PHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTKTIELVGYDKLG 1465
            PHHNQSPRNTYQCAMGKQAMGNIAYNQLCR DTLIY+LVYPQRPLLTTKTIEL+ +DKLG
Sbjct: 651  PHHNQSPRNTYQCAMGKQAMGNIAYNQLCRADTLIYILVYPQRPLLTTKTIELIKFDKLG 710

Query: 1464 AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAISQKYENGTSDRIIRPQ 1285
            AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVM K+SA+SQKY +G+SDRI+RPQ
Sbjct: 711  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMTKLSAVSQKYGDGSSDRILRPQ 770

Query: 1284 RQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKITRGPVTSPAGLSDSDYKPSRQT 1105
            R+G DAER Q+LDDDGLA+PG IIRPHD YINKESP ++    TS   L DS YKPSRQT
Sbjct: 771  REGRDAERNQVLDDDGLASPGLIIRPHDTYINKESPMVSTKLQTSSVTLPDSAYKPSRQT 830

Query: 1104 YKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQED 925
            YKGPE ETAVVDRV L SDKNNNL IK MIR TRRPEVGDKFSSRHGQKGVCGTIVQQED
Sbjct: 831  YKGPETETAVVDRVMLFSDKNNNLIIKTMIRQTRRPEVGDKFSSRHGQKGVCGTIVQQED 890

Query: 924  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFHYGSAFGEPSGHADRVE 745
             PFSE G+CPDLIMNPHG+PSRMTVGKMIELLGSKAGVS GR+HYGSAFGE  GHAD+VE
Sbjct: 891  LPFSELGVCPDLIMNPHGYPSRMTVGKMIELLGSKAGVSCGRYHYGSAFGERGGHADKVE 950

Query: 744  AISETLVKHGFSYNGKDFLYSGITGMPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM 565
            AISETLV+HGF Y+GKDFLYSGITG PLQAYIFMGPIYYQKLKHMV+DKMHAR SGPRVM
Sbjct: 951  AISETLVRHGFCYSGKDFLYSGITGEPLQAYIFMGPIYYQKLKHMVVDKMHARASGPRVM 1010

Query: 564  ITRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQ-VCRKCGLLGYY 388
            +TRQPTEGRSRNGGLRVGEMERDCLIAYGASML+YERLM+SSDPFEVQ VCRKCGLLGYY
Sbjct: 1011 LTRQPTEGRSRNGGLRVGEMERDCLIAYGASMLLYERLMLSSDPFEVQVVCRKCGLLGYY 1070

Query: 387  NYKLKKGICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPR 262
            ++KLK GICSTCK  +++STMKLPYACKLL QELQ+MNIVPR
Sbjct: 1071 DFKLKAGICSTCKETESMSTMKLPYACKLLFQELQAMNIVPR 1112


>ref|XP_004308665.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
            [Fragaria vesca subsp. vesca]
          Length = 1163

 Score = 1762 bits (4564), Expect = 0.0
 Identities = 872/1130 (77%), Positives = 977/1130 (86%), Gaps = 3/1130 (0%)
 Frame = -2

Query: 3642 LGIDKRFLAAPMKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEIKKIVSANQWIRSK 3463
            + IDK  LAAP+KSA DKF L+PEFLKVRGLVKQHLDSFNYFV T IKKIV AN  I S 
Sbjct: 31   MDIDKELLAAPIKSAKDKFALIPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSG 90

Query: 3462 VDERVYLRYTDVRIGEPSMIIDGVTEKLTPHKCRLSDMTYAAPIFVSIEY-RGQSQSTDP 3286
            VD  ++LR+ +V I  PS+  DGVT ++ PH CRLSDMTY+API V +EY  G       
Sbjct: 91   VDPSIWLRFNNVYIDRPSLTTDGVTTEIAPHTCRLSDMTYSAPIRVDVEYVEGSHDQKMI 150

Query: 3285 LKKKDVIIGRMPIMLRSRSCVLYGKDEEELANLGECPLDPGGYFVIKGTEKVILIQEQLS 3106
              +K + IGR+PIMLRS  C LYGK E ELA LGECPLDPGGYF+IKG EKV+LIQEQLS
Sbjct: 151  ATRKGIEIGRLPIMLRSCCCTLYGKTESELATLGECPLDPGGYFIIKGNEKVLLIQEQLS 210

Query: 3105 KNRIIIDIDKKGCVQXXXXXXXXXXXXXXVIKMEKEKIYLYLNQFKNKVPIMVVMKAMGM 2926
            KNRIIID+DKKG V               +I+MEK+KIYL LNQF  K+PIMVVMKAMGM
Sbjct: 211  KNRIIIDMDKKGNVNASVTSSSETIKSKTIIQMEKQKIYLELNQFSKKIPIMVVMKAMGM 270

Query: 2925 ESDQEVVQMIGRDPRYSALLLPSIEECAKANVYMQQEALDYLEKQVKQLPYHYAPVEE-- 2752
             SDQEVVQM+GRDPRY ALL+PSIEECAK  +Y +++AL YLE +VK+  +  A  ++  
Sbjct: 271  TSDQEVVQMVGRDPRYGALLMPSIEECAKEGIYTKEQALLYLEPKVKRSMFDSASSDKDS 330

Query: 2751 RALSILADIFIANIPVREKNFRSKCIYVAVMLRRMMEAILNKDAMDDKDYVGNKRLELSG 2572
            + +++L DIFIAN+PVR  NFR KCIYVAVMLRR+M+AILNKD MDDKDYVGNKRLELSG
Sbjct: 331  KVMAVLRDIFIANVPVRRSNFRPKCIYVAVMLRRIMDAILNKDTMDDKDYVGNKRLELSG 390

Query: 2571 QMLSLLFEDLFKTMNDEVKKTIDAILDKPSRSSRFDISQYIVKDSITVGLERSLSTGNWD 2392
            Q +SLLFEDLFKTM  EV+KT+D IL KPSRSSRFD++QYI KD I++GLER+LSTGN+D
Sbjct: 391  QSISLLFEDLFKTMISEVRKTVDNILTKPSRSSRFDLAQYIRKDQISLGLERTLSTGNFD 450

Query: 2391 VKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTP 2212
            +KRF+MHR GMTQV+ARLS+IG+LG MT+  PQFEKSRKVSGPRALQPSQWGMLCPCDTP
Sbjct: 451  LKRFKMHRTGMTQVLARLSFIGSLGQMTRTKPQFEKSRKVSGPRALQPSQWGMLCPCDTP 510

Query: 2211 EGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHSPNSFLIILNGLI 2032
            EGEACGLVKNLALM HVTTDEEEGP++SLC CLGVEDLE LS EELHSPNSFL++ NG I
Sbjct: 511  EGEACGLVKNLALMAHVTTDEEEGPLISLCKCLGVEDLETLSAEELHSPNSFLVLFNGDI 570

Query: 2031 LGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNEKQRCVYIASDGGRVCRPLVIADKGVSR 1852
            LGKHRKPQR A AMRKLRRAGKIGEFVS++VNEKQ CVYIASDGGRVCRPLVIADKG+SR
Sbjct: 571  LGKHRKPQRLATAMRKLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGISR 630

Query: 1851 IKEPHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYDSEATPETTHIEIEPFTIL 1672
            +KE HM+EL  GVR FD FL +GLIEYLDVNE+NNALIALY+ EAT ETTHIEIEPFTIL
Sbjct: 631  VKEYHMQELNAGVRTFDDFLSDGLIEYLDVNEQNNALIALYEDEATTETTHIEIEPFTIL 690

Query: 1671 GVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTKTI 1492
            GV AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL R+D L+YLLVYPQRPLLTTKTI
Sbjct: 691  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRID-LLYLLVYPQRPLLTTKTI 749

Query: 1491 ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAISQKYENG 1312
            ELVG+DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI+MKK    +Q Y N 
Sbjct: 750  ELVGFDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCILMKKFVVANQNYSNN 809

Query: 1311 TSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKITRGPVTSPAGLSD 1132
            T DRII+P +   D+ +M++LDDDG+AAPGEII  +DIY+ K+ P +TRG + S  GL D
Sbjct: 810  TQDRIIKPNKDEVDSGKMRVLDDDGIAAPGEIITANDIYVKKQVPIVTRGAIRS--GLKD 867

Query: 1131 SDYKPSRQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSSRHGQKGV 952
            SDY+ + Q YKGP+GE+ VVD+VAL SDK+NNLC+K +IRHTRRPEVGDKFSSRHGQKGV
Sbjct: 868  SDYRSTFQRYKGPDGESCVVDKVALFSDKHNNLCVKLLIRHTRRPEVGDKFSSRHGQKGV 927

Query: 951  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFHYGSAFGE 772
            CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGE
Sbjct: 928  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 987

Query: 771  PSGHADRVEAISETLVKHGFSYNGKDFLYSGITGMPLQAYIFMGPIYYQKLKHMVLDKMH 592
            PSGHAD+VEAISETLV+ GFSY+GKD++ SGITG PLQAYIFMGPIYYQKLKHMVLDKMH
Sbjct: 988  PSGHADKVEAISETLVRMGFSYDGKDYICSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1047

Query: 591  ARGSGPRVMITRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCR 412
            ARGSGPRV +TRQPTEG++RNGGLRVGEMERDCLIAYGASML+YERLMISSDPFEVQVCR
Sbjct: 1048 ARGSGPRVSLTRQPTEGKARNGGLRVGEMERDCLIAYGASMLLYERLMISSDPFEVQVCR 1107

Query: 411  KCGLLGYYNYKLKKGICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPR 262
             CGLLGYYN+K+K GICS+CKNGDNISTMKLPYACKLLIQELQSMNIVPR
Sbjct: 1108 VCGLLGYYNHKMKAGICSSCKNGDNISTMKLPYACKLLIQELQSMNIVPR 1157


>ref|XP_006279912.1| hypothetical protein CARUB_v10025768mg [Capsella rubella]
            gi|482548616|gb|EOA12810.1| hypothetical protein
            CARUB_v10025768mg [Capsella rubella]
          Length = 1160

 Score = 1762 bits (4563), Expect = 0.0
 Identities = 874/1153 (75%), Positives = 996/1153 (86%), Gaps = 17/1153 (1%)
 Frame = -2

Query: 3669 QEENDDTNVLG-IDKRFLAAPMKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEIKKI 3493
            QE+ D TN    I+K  L+AP+KS  DKFQL+PEFLKVRGLVKQHLDSFNY +   IKKI
Sbjct: 5    QEDLDSTNDDNFINKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYLINVGIKKI 64

Query: 3492 VSANQWIRSKVDERVYLRYTDVRIGEPSMIIDGVTEKLTPHKCRLSDMTYAAPIFVSIEY 3313
            V AN  I S  D  +YLR+  VR+GEPS++   + E++ PH CRL+DMTYAAPI V+IEY
Sbjct: 65   VKANCLITSTADPSIYLRFKAVRVGEPSILNINMAEQINPHMCRLADMTYAAPIHVNIEY 124

Query: 3312 -RGQSQSTDPLKKKDVIIGRMPIMLRSRSCVLYGKDEEELANLGECPLDPGGYFVIKGTE 3136
              G         K +V+IGRMPIMLRS  CVL GKDE+ELA LGECPLDPGGYFVIKGTE
Sbjct: 125  VHGSHGEKQTSAKNNVLIGRMPIMLRSCRCVLNGKDEDELARLGECPLDPGGYFVIKGTE 184

Query: 3135 KVILIQEQLSKNRIIIDIDKKGCVQXXXXXXXXXXXXXXVIKMEKEKIYLYLNQFKNKVP 2956
            KV+LIQEQLSKNRIIID DKKG +               VI+MEKE+IYL+L+QF  K+P
Sbjct: 185  KVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKERIYLFLHQFVKKIP 244

Query: 2955 IMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYMQQEALDYLEKQVKQLP 2776
            I++V+KAMGMESDQE+VQM+GRDPR+SA LLPSIEEC    V  Q++ALDYLE +VK+  
Sbjct: 245  IIIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKTS 304

Query: 2775 YHYAPVEE--RALSILADIFIANIPVREKNFRSKCIYVAVMLRRMMEAILNKDAMDDKDY 2602
            Y   P+++  RAL IL D+F+A++PVR+ NFR KC YV VMLRRM+EA+LNKDAMDDKDY
Sbjct: 305  YG-PPLQKDGRALYILRDLFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDY 363

Query: 2601 VGNKRLELSGQMLSLLFEDLFKTMNDEVKKTIDAILDKPSRSSRFDISQYIVKDSITVGL 2422
            VGNKRLELSGQ++SLLFEDLFKTM  E  K +D IL K +R+SRFD SQ +  D I++GL
Sbjct: 364  VGNKRLELSGQLISLLFEDLFKTMITEAIKKVDVILTKQNRASRFDFSQCLSGDIISLGL 423

Query: 2421 ERSLSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQ 2242
            ER+LSTGN+D+KRFRMHRKGMTQV+ RLS+IG+LG +TKISPQFEKSRKVSGPR+LQPSQ
Sbjct: 424  ERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIGSLGFITKISPQFEKSRKVSGPRSLQPSQ 483

Query: 2241 WGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHSPN 2062
            WGMLCPCDTPEGE+CGLVKNLALMTHVTTDEEEGP+V++CY LGV DLE+LS EELH+P+
Sbjct: 484  WGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPD 543

Query: 2061 SFLIILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNEKQRCVYIASDGGRVCRP 1882
            SFL+ILNGLILGKHR+PQ FAN++R+LRRAGKIGEFVS++ NEKQ CVY+ASDGGRVCRP
Sbjct: 544  SFLVILNGLILGKHRRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDGGRVCRP 603

Query: 1881 LVIADKGVSRIKEPHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYDSEATPE-- 1708
            LVIADKG+SR+K+ HMKEL+DGVR FD F+R+GLIEYLDVNEENNALIALY+S+AT E  
Sbjct: 604  LVIADKGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALIALYESDATTELD 663

Query: 1707 -----------TTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQL 1561
                       TTHIEIEPFTILGV AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL
Sbjct: 664  EGGEAAKIRADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL 723

Query: 1560 CRMDTLIYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 1381
             RMDTL+YLLVYPQRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL
Sbjct: 724  NRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 783

Query: 1380 DRGFGRCIVMKKMSAISQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHD 1201
            DRGFGRCIVMKK+ A SQKY+N T DRI+RPQR G DAE+MQILD+DG+A+PGEIIRP+D
Sbjct: 784  DRGFGRCIVMKKIVATSQKYDNNTQDRILRPQRTGPDAEKMQILDNDGIASPGEIIRPND 843

Query: 1200 IYINKESPKITRGPVTSPAGLSDSDYKPSRQTYKGPEGETAVVDRVALCSDKNNNLCIKY 1021
            +YINK+SP  T+  +T+   LSDS Y+P+R+ +KGPEGET VVDRVALCS+K+++LCIKY
Sbjct: 844  VYINKQSPVDTKNKMTTQ--LSDSQYRPAREYFKGPEGETQVVDRVALCSNKHDHLCIKY 901

Query: 1020 MIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKM 841
            +IRHTRRPE+GDKFSSRHGQKGVCGTI+QQEDFPFSE GICPDLIMNPHGFPSRMTVGKM
Sbjct: 902  IIRHTRRPELGDKFSSRHGQKGVCGTIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKM 961

Query: 840  IELLGSKAGVSSGRFHYGSAFGEPSGHADRVEAISETLVKHGFSYNGKDFLYSGITGMPL 661
            IELLGSKAGVS GRFHYGSAFGE  GHAD+VE IS TLV  GFSY+GKD LYSGI+G PL
Sbjct: 962  IELLGSKAGVSCGRFHYGSAFGERGGHADKVETISATLVNKGFSYSGKDLLYSGISGEPL 1021

Query: 660  QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMITRQPTEGRSRNGGLRVGEMERDCLIAY 481
            QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM+TRQPTEG+S+NGGLRVGEMERDCLIAY
Sbjct: 1022 QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAY 1081

Query: 480  GASMLIYERLMISSDPFEVQVCRKCGLLGYYNYKLKKGICSTCKNGDNISTMKLPYACKL 301
            GASMLIYERLM+SSDPFEVQVCR CGLLGYY+YKLKK  CSTCKNGDNI+TMKLPYACKL
Sbjct: 1082 GASMLIYERLMVSSDPFEVQVCRACGLLGYYSYKLKKAFCSTCKNGDNIATMKLPYACKL 1141

Query: 300  LIQELQSMNIVPR 262
            L QELQSMN+VPR
Sbjct: 1142 LFQELQSMNVVPR 1154


>ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis thaliana]
            gi|332007826|gb|AED95209.1| DNA-directed RNA polymerase
            RPC2 [Arabidopsis thaliana]
          Length = 1161

 Score = 1762 bits (4563), Expect = 0.0
 Identities = 880/1153 (76%), Positives = 993/1153 (86%), Gaps = 17/1153 (1%)
 Frame = -2

Query: 3669 QEENDDTNVLG-IDKRFLAAPMKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTEIKKI 3493
            QE+ D TN    IDK  L+AP+KS  DKFQL+PEFLKVRGLVKQHLDSFNYF+   I KI
Sbjct: 5    QEDLDLTNDDHFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKI 64

Query: 3492 VSANQWIRSKVDERVYLRYTDVRIGEPSMIIDGVTEKLTPHKCRLSDMTYAAPIFVSIEY 3313
            V AN  I S VD  +YLR+  VR+GEPS+I     E + PH CRL+DMTYAAPIFV+IEY
Sbjct: 65   VKANSRITSTVDPSIYLRFKKVRVGEPSIINVNTVENINPHMCRLADMTYAAPIFVNIEY 124

Query: 3312 RGQSQSTDPLKKKD-VIIGRMPIMLRSRSCVLYGKDEEELANLGECPLDPGGYFVIKGTE 3136
               S        KD VIIGRMPIMLRS  CVL+GKDEEELA LGECPLDPGGYF+IKGTE
Sbjct: 125  VHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTE 184

Query: 3135 KVILIQEQLSKNRIIIDIDKKGCVQXXXXXXXXXXXXXXVIKMEKEKIYLYLNQFKNKVP 2956
            KV+LIQEQLSKNRIIID DKKG +               VI+MEKEKIYL+L++F  K+P
Sbjct: 185  KVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKKIP 244

Query: 2955 IMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYMQQEALDYLEKQVKQLP 2776
            I++V+KAMGMESDQE+VQM+GRDPR+SA LLPSIEEC    V  Q++ALDYLE +VK++ 
Sbjct: 245  IIIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKIS 304

Query: 2775 YHYAPVEE-RALSILADIFIANIPVREKNFRSKCIYVAVMLRRMMEAILNKDAMDDKDYV 2599
            Y   P ++ RALSIL D+F+A++PV + NFR KC YV VMLRRM+EA+LNKDAMDDKDYV
Sbjct: 305  YGTPPEKDGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYV 364

Query: 2598 GNKRLELSGQMLSLLFEDLFKTMNDEVKKTIDAILDKPSRSSRFDISQYIVKDS---ITV 2428
            GNKRLELSGQ++SLLFEDLFKTM  E  K +D IL+KP R+SRFD SQ + KDS   I++
Sbjct: 365  GNKRLELSGQLISLLFEDLFKTMLSEAIKNVDHILNKPIRASRFDFSQCLNKDSRYSISL 424

Query: 2427 GLERSLSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQP 2248
            GLER+LSTGN+D+KRFRMHRKGMTQV+ RLS+IG++G +TKISPQFEKSRKVSGPR+LQP
Sbjct: 425  GLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQP 484

Query: 2247 SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHS 2068
            SQWGMLCPCDTPEGE+CGLVKNLALMTHVTTDEEEGP+V++CY LGV DLE+LS EELH+
Sbjct: 485  SQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHT 544

Query: 2067 PNSFLIILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNEKQRCVYIASDGGRVC 1888
            P+SFL+ILNGLILGKH +PQ FAN++R+LRRAGKIGEFVS++ NEKQ CVY+ASD GRVC
Sbjct: 545  PDSFLVILNGLILGKHSRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVC 604

Query: 1887 RPLVIADKGVSRIKEPHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYDSEATPE 1708
            RPLVIADKG+SR+K+ HMKEL+DGVR FD F+R+GLIEYLDVNEENNALIALY+S+ T E
Sbjct: 605  RPLVIADKGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALIALYESDGTTE 664

Query: 1707 -----------TTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQL 1561
                       TTHIEIEPFTILGV AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL
Sbjct: 665  LDEGAEAAKADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL 724

Query: 1560 CRMDTLIYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 1381
             RMDTL+YLLVYPQRPLLTT+TIELVGYDKLGAGQNATVAVMS+SGYDIEDAIVMNKSSL
Sbjct: 725  NRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSL 784

Query: 1380 DRGFGRCIVMKKMSAISQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHD 1201
            DRGFGRCIVMKK+ A+SQKY+N T+DRI+ PQR G DAE+MQILDDDGLA PGEIIRP+D
Sbjct: 785  DRGFGRCIVMKKIVAMSQKYDNCTADRILIPQRTGPDAEKMQILDDDGLATPGEIIRPND 844

Query: 1200 IYINKESPKITRGPVTSPAGLSDSDYKPSRQTYKGPEGETAVVDRVALCSDKNNNLCIKY 1021
            IYINK+ P  T    TS   LSDS Y+P+R+ +KGPEGET VVDRVALCSDK   LCIKY
Sbjct: 845  IYINKQVPVDTVTKFTS--ALSDSQYRPAREYFKGPEGETQVVDRVALCSDKKGQLCIKY 902

Query: 1020 MIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKM 841
            +IRHTRRPE+GDKFSSRHGQKGVCG I+QQEDFPFSE GICPDLIMNPHGFPSRMTVGKM
Sbjct: 903  IIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKM 962

Query: 840  IELLGSKAGVSSGRFHYGSAFGEPSGHADRVEAISETLVKHGFSYNGKDFLYSGITGMPL 661
            IELLGSKAGVS GRFHYGSAFGE SGHAD+VE IS TLV+ GFSY+GKD LYSGI+G P+
Sbjct: 963  IELLGSKAGVSCGRFHYGSAFGERSGHADKVETISATLVEKGFSYSGKDLLYSGISGEPV 1022

Query: 660  QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMITRQPTEGRSRNGGLRVGEMERDCLIAY 481
            +AYIFMGPIYYQKLKHMVLDKMHARGSGPRVM+TRQPTEG+S+NGGLRVGEMERDCLIAY
Sbjct: 1023 EAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAY 1082

Query: 480  GASMLIYERLMISSDPFEVQVCRKCGLLGYYNYKLKKGICSTCKNGDNISTMKLPYACKL 301
            GASMLIYERLMISSDPFEVQVCR CGLLGYYNYKLKK +C+TCKNGDNI+TMKLPYACKL
Sbjct: 1083 GASMLIYERLMISSDPFEVQVCRACGLLGYYNYKLKKAVCTTCKNGDNIATMKLPYACKL 1142

Query: 300  LIQELQSMNIVPR 262
            L QELQSMN+VPR
Sbjct: 1143 LFQELQSMNVVPR 1155


>gb|EOY19615.1| DNA-directed RNA polymerase isoform 7 [Theobroma cacao]
          Length = 1082

 Score = 1756 bits (4548), Expect = 0.0
 Identities = 870/1076 (80%), Positives = 954/1076 (88%), Gaps = 27/1076 (2%)
 Frame = -2

Query: 3408 MIIDGVTEKLTPHKCRLSDMTYAAPIFVSIEY-RGQSQSTDPLKKKDVIIGRMPIMLRSR 3232
            M I+ V+EK+ PH CRLSDMTYAAPIFV+IEY +G       L+K D++IGRMPIMLRS 
Sbjct: 1    MTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSC 60

Query: 3231 SCVLYGKDEEELANLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDIDKKGCVQXXX 3052
             CVLYGKDE ELA LGECPLDPGGYFVIKG EKVILIQEQLSKNRIIID DKKG +    
Sbjct: 61   CCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASV 120

Query: 3051 XXXXXXXXXXXVIKMEKEKIYLYLNQFKNKVPIMVVMKAMGMESDQEVVQMIGRDPRYSA 2872
                       VI+MEKEKIYL LNQF  K+PIMVVMKAMGMESDQEVVQM+GRDP Y+A
Sbjct: 121  TSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNA 180

Query: 2871 LLLPSIEECAKANVYMQQEALDYLEKQVKQLPYHYAPVEE--RALSILADIFIANIPVRE 2698
            +LLPSIEECA   +Y Q++AL+YLE +VK++ Y     E+  RALSIL D+F+AN+PVR 
Sbjct: 181  VLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRS 240

Query: 2697 KNFRSKCIYVAVMLRRMMEAILNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEV 2518
             NFR KC+YVAVMLRRM+EAILNKDAMDDKDYVGNKRLELSGQ++SLLFEDLFKT   EV
Sbjct: 241  NNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEV 300

Query: 2517 KKTIDAILDKPSRSSRFDISQYI-VKDSITVGLERSLSTGNWDVKRFRMHRKGMTQVVAR 2341
            +K ID +L KPSRSS  D SQ++  +++IT GLER+LSTGN+D+KRF+MHRKGMTQV+AR
Sbjct: 301  QKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIKRFKMHRKGMTQVLAR 360

Query: 2340 LSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 2161
            LS+IGTLG+MTK+SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV
Sbjct: 361  LSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 420

Query: 2160 TTDEEEGPIVSLCYCLGVEDLELLSGEELHSPNSFLIILNGLILGKHRKPQRFANAMRKL 1981
            TTDE+EGP++SLCYCLGVEDLELLSGEELH+PNSFL+ILNGLILGKHR+PQ FA AMRKL
Sbjct: 421  TTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILGKHRRPQHFAVAMRKL 480

Query: 1980 RRAGKIGEFVSIYVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEPHMKELKDGVRNFD 1801
            RRAGK+GEFVS++VNEKQRCVYIASDGGRVCRPLVIADKGVSRIKE HMKEL DGVR FD
Sbjct: 481  RRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELLDGVRTFD 540

Query: 1800 SFLREGLIEYLDVNEENNALIALYDSEATPETTHIEIEPFTILGVCAGLIPFPHHNQSPR 1621
             FLR+GLIEYLDVNEENNALIALY+ EATPETTHIEIEPFTILGVCAGLIP+PHHNQSPR
Sbjct: 541  DFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPR 600

Query: 1620 NTYQCAMGKQAMGNIAYNQLCRMDTLIYLLVYPQRPLLTTKTIELV-------------- 1483
            NTYQCAMGKQAMGNIAYNQLCRMDTL+YLLVYPQRPLLTT+TIELV              
Sbjct: 601  NTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVSGLYVVDYSTPFCP 660

Query: 1482 ---------GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAIS 1330
                     GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMK+ SA++
Sbjct: 661  VNCLLCFQVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVN 720

Query: 1329 QKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKITRGPVTS 1150
            QKYE G SDRI+RPQR G  +ERMQILDDDG+A PGEIIRP+DIYINKES   TRG   S
Sbjct: 721  QKYETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVS 780

Query: 1149 PAGLSDSDYKPSRQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSSR 970
               L DS Y+P+RQTYKGPEGE+ VVDRVALC+D+N+NL IK++IRHTRRPEVGDKFSSR
Sbjct: 781  SESLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSR 840

Query: 969  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFHY 790
            HGQKGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHY
Sbjct: 841  HGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 900

Query: 789  GSAFGEPSGHADRVEAISETLVKHGFSYNGKDFLYSGITGMPLQAYIFMGPIYYQKLKHM 610
            GSAFGEPSGHADRVEAISETL+KHGFSYNGKDF+YSGITG PLQAYIFMGPIYYQKLKHM
Sbjct: 901  GSAFGEPSGHADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHM 960

Query: 609  VLDKMHARGSGPRVMITRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDPF 430
            VLDKMHARG+GPRVM+TRQPTEGR+RNGGLRVGEMERDCLIAYGASMLI+ERLMISSDPF
Sbjct: 961  VLDKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPF 1020

Query: 429  EVQVCRKCGLLGYYNYKLKKGICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPR 262
            EVQVCRKCGLLGYY++KLK GICS+CKNGDN+STMKLPYACKLLIQELQSMNIVPR
Sbjct: 1021 EVQVCRKCGLLGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQSMNIVPR 1076


>ref|XP_006583557.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like isoform
            X1 [Glycine max]
          Length = 1165

 Score = 1749 bits (4531), Expect = 0.0
 Identities = 880/1163 (75%), Positives = 985/1163 (84%), Gaps = 6/1163 (0%)
 Frame = -2

Query: 3732 PLLSPRLSAFGPQPLPAIMTVQEENDDTNVLGIDKRFLAAPMKSAVDKFQLLPEFLKVRG 3553
            PL +P     G   LP         D     G D+R L AP+KSAVDKFQLLPEFLKVRG
Sbjct: 7    PLQNPPNQFNGGNKLPG--------DHCGDSGFDQRVLTAPIKSAVDKFQLLPEFLKVRG 58

Query: 3552 LVKQHLDSFNYFVRTEIKKIVSANQWIRSKVDERVYLRYTDVRIGEPSMIIDGVTEKLTP 3373
            LVKQHLDSFNYFVRT+IKKIV AN  I +     +YLR+ +V IG+PS++ID VTE LTP
Sbjct: 59   LVKQHLDSFNYFVRTDIKKIVRANDLIVASRYPHIYLRFLNVGIGKPSIMIDEVTEDLTP 118

Query: 3372 HKCRLSDMTYAAPIFVSIEYR-GQSQSTDPLKKKDVIIGRMPIMLRSRSCVLYGKDEEEL 3196
              CRLSD+TYAAPI   +EY  G     D  +K  V IGRMPIMLRS  CVL+G+DE EL
Sbjct: 119  QTCRLSDLTYAAPICADVEYTLGSHDKPDIKRKLKVEIGRMPIMLRSCCCVLHGRDEAEL 178

Query: 3195 ANLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDIDKKGCVQXXXXXXXXXXXXXXV 3016
            A LGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIID DKKG +               V
Sbjct: 179  AKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGNITASVTSSTEKIKTKTV 238

Query: 3015 IKMEKEKIYLYLNQFKNKVPIMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKA 2836
            + MEKEK++L LN+F  KVP+MVVMKAMGMESDQEV QM+GRDPRYS LLLPSIEEC K 
Sbjct: 239  VVMEKEKLWLQLNKFPKKVPLMVVMKAMGMESDQEVTQMVGRDPRYSFLLLPSIEECTKC 298

Query: 2835 NVYMQQEALDYLEKQVKQLPY--HYAPVEERALSILADIFIANIPVREKNFRSKCIYVAV 2662
             VY +++AL+YL+K VK+  Y  + A  E  A S L D+F+AN+PV + NFR KCIYVAV
Sbjct: 299  KVYTREQALEYLDKLVKRPTYSNNAAEKEGAAFSALRDVFLANVPVDQDNFRPKCIYVAV 358

Query: 2661 MLRRMMEAILNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEVKKTIDAILDKPS 2482
            M+RR+M+AILNKDAMDDKDYVGNKRLELSGQ++SLLFEDLFK+M  EVK   D +L+KP 
Sbjct: 359  MMRRIMDAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKSMTTEVKNLTDKMLEKPD 418

Query: 2481 RSSRFDISQYIVKDS--ITVGLERSLSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMT 2308
            ++  FDI   + +    IT+GLER+LSTGN+++KRFRM RKGMTQV+ RLS+IG LGHMT
Sbjct: 419  KAKNFDICTLLTRTRSIITLGLERTLSTGNFEIKRFRMERKGMTQVLQRLSFIGALGHMT 478

Query: 2307 KISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVS 2128
            ++SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE+CGLVKNLALMTHVTTDEEE P++S
Sbjct: 479  RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEKPLIS 538

Query: 2127 LCYCLGVEDLELLSGEELHSPNSFLIILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVS 1948
            LC  LGVED++ LS EELH+P+SFL+I NGLILGKHR+P  FA A+RKLRRAGKIGEFVS
Sbjct: 539  LCESLGVEDMKDLSAEELHTPDSFLVIFNGLILGKHRRPLHFATAIRKLRRAGKIGEFVS 598

Query: 1947 IYVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEPHMKELKDGVRNFDSFLREGLIEYL 1768
            +YVNEKQ CVY+ASDGGRVCRPLVIADKG+SRIK+ HMKEL DGVR FD FLR+GL+EYL
Sbjct: 599  VYVNEKQHCVYLASDGGRVCRPLVIADKGISRIKQHHMKELMDGVRTFDDFLRDGLLEYL 658

Query: 1767 DVNEENNALIALYDSEATPETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQA 1588
            DVNEENNALIALY+ +AT ETTHIEIEPFTILGV AGLIP+PHHNQSPRNTYQCAMGKQA
Sbjct: 659  DVNEENNALIALYEGDATSETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQA 718

Query: 1587 MGNIAYNQLCRMDTLIYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIED 1408
            MGNIA+NQL RMD+L+YLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIED
Sbjct: 719  MGNIAFNQLRRMDSLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIED 778

Query: 1407 AIVMNKSSLDRGFGRCIVMKKMSAISQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAA 1228
            AIVMNK+SLDRGFGRCIVMKK +AI QK+ N TSDRI+RP R    A RMQILDDDG+AA
Sbjct: 779  AIVMNKASLDRGFGRCIVMKKYNAIIQKHSNDTSDRILRPNRTADTAGRMQILDDDGIAA 838

Query: 1227 PGEIIRPHDIYINKESPKITRGPVT-SPAGLSDSDYKPSRQTYKGPEGETAVVDRVALCS 1051
            PGEI+RP+DIYINK+SP  TR P T S A L DS Y+ + Q++KG  GE  VVDRV LCS
Sbjct: 839  PGEILRPYDIYINKQSPIDTRTPKTGSAANLPDSAYRSNAQSFKGNGGE--VVDRVVLCS 896

Query: 1050 DKNNNLCIKYMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHG 871
            DK+NN+CIK++IRHTRRPE+GDKFSSRHGQKGVCGTIV QEDFPFSE+GICPDLIMNPHG
Sbjct: 897  DKDNNMCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNPHG 956

Query: 870  FPSRMTVGKMIELLGSKAGVSSGRFHYGSAFGEPSGHADRVEAISETLVKHGFSYNGKDF 691
            FPSRMTVGKMIELLG KAGVS GRFHYGSAFGE SGHAD+VE ISETLV  GF+Y+GKDF
Sbjct: 957  FPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERSGHADKVETISETLVSKGFNYSGKDF 1016

Query: 690  LYSGITGMPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMITRQPTEGRSRNGGLRVG 511
            +YSGITG PLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM+TRQPTEGR+RNGGLRVG
Sbjct: 1017 IYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVG 1076

Query: 510  EMERDCLIAYGASMLIYERLMISSDPFEVQVCRKCGLLGYYNYKLKKGICSTCKNGDNIS 331
            EMERDCLIAYGASMLIYERLM+SSDPFEVQVC  CGLLGYYN+KLK GICS+CKNGDNIS
Sbjct: 1077 EMERDCLIAYGASMLIYERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSSCKNGDNIS 1136

Query: 330  TMKLPYACKLLIQELQSMNIVPR 262
            TMKLPYACKL+IQELQSMNIVPR
Sbjct: 1137 TMKLPYACKLMIQELQSMNIVPR 1159