BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00001612
         (3851 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...  1515   0.0  
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...  1509   0.0  
gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlise...  1380   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]             1340   0.0  
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...  1340   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...  1263   0.0  
gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma ca...  1259   0.0  
gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma ca...  1254   0.0  
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th...  1254   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...  1243   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1239   0.0  
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...  1238   0.0  
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr...  1236   0.0  
gb|EMJ04262.1| hypothetical protein PRUPE_ppa000153mg [Prunus pe...  1235   0.0  
gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Th...  1228   0.0  
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...  1217   0.0  
gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus...  1214   0.0  
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...  1186   0.0  
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...  1184   0.0  
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab...  1181   0.0  

>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score = 1515 bits (3923), Expect = 0.0
 Identities = 787/1242 (63%), Positives = 926/1242 (74%), Gaps = 12/1242 (0%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSS 3671
            LRLTYPER+TPWN  K+RDA++NGPE HPGA+S+AD+++TVKLPSNKKMR+AISRKLPSS
Sbjct: 476  LRLTYPERLTPWNAVKMRDAVINGPENHPGAVSFADRIATVKLPSNKKMRVAISRKLPSS 535

Query: 3670 RGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMH 3491
            RG VTQSG N+EYEFEGK+VYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT RMH
Sbjct: 536  RGAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 595

Query: 3490 YANCSSYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSA 3311
            YANCS+YNADFDGDEMNVH PQDEIS AEAYNIVNANEQYIVPTKGDTVRGLIQDHIV A
Sbjct: 596  YANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGA 655

Query: 3310 VXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKPK 3131
            V            EFNQLLYGSGVFA  P   S N + K+S++D EGV+Q VLPAVWKPK
Sbjct: 656  VILTMKNTFLTLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSVVDFEGVVQTVLPAVWKPK 715

Query: 3130 PLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDEKKNSENQPRKE 2951
            PLWTGKQVITALLNHLT+GC P +++ + KIP  YF            E +  E Q R+E
Sbjct: 716  PLWTGKQVITALLNHLTKGCAPCTVKNKGKIPYPYF----------LSESRLVEYQSREE 765

Query: 2950 EKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXXXXX 2771
            +          E +T+EN  +IWKNELV+GVIDKAQFG+FGLVHT+QE            
Sbjct: 766  Q----------EDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLS 815

Query: 2770 XXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILD-QDVGNEVHSKFVNCV-PDIAPK 2597
                LFTIFLQLHGFTCGVDDL+ILP  D++RKE L+  DVG E H  FV     +I P 
Sbjct: 816  ALSRLFTIFLQLHGFTCGVDDLVILPHYDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPL 875

Query: 2596 ELQWELEKVICRNRESASTSLDLMMRRKFKDQQENISKELLLTELLKPFPKNCISLMTVS 2417
            ELQ E+EK +  N+E+A+ +LD+ M+ K  ++    +KELLL  LLKPFP+NCI+LMT++
Sbjct: 876  ELQLEIEKAMSSNKEAATAALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNCIALMTIT 935

Query: 2416 GAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGLR 2237
            GAKG TVNFQQISS+LGQQ+LEGKRVPRMVSGKTLPCFPPWD  SRAGGYV+DRFLSGLR
Sbjct: 936  GAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDCASRAGGYVSDRFLSGLR 995

Query: 2236 PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADGSIVQFKYG 2057
            PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDY+VRDADGSI+QF YG
Sbjct: 996  PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYG 1055

Query: 2056 EDGVDVHRTSFLKNFEALVNNQETLRQKFQYEHEFNAYVDKLPEGLEEDAEIFFMKLKNR 1877
            EDGVDVHRTSFLKNF+AL NNQET+ QK ++  + N+Y++KLP+GLEE  + F+ K   +
Sbjct: 1056 EDGVDVHRTSFLKNFKALKNNQETICQKLRHGRKLNSYIEKLPDGLEEKVKHFWEKRTKK 1115

Query: 1876 ESEELLKVSKISK-----RANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPSTQMT 1712
              ++L K+ K  +     +    DFL+LV QKY SSLA  GEPVGV+A QSVGEPSTQMT
Sbjct: 1116 LEKKLGKLVKKEEMVKQLKEEEADFLELVRQKYFSSLADSGEPVGVLAGQSVGEPSTQMT 1175

Query: 1711 LNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGKMKKI 1532
            LNTFHLAGRGEMNVTLGIPRLQEILMTAS+ IKTP+LTCPFL  +SK+DA SLL K+KKI
Sbjct: 1176 LNTFHLAGRGEMNVTLGIPRLQEILMTASEAIKTPILTCPFLGWQSKNDAQSLLAKVKKI 1235

Query: 1531 TVADIVESMEVHLLP--VHKDSEDRIYKLLIKFKPHDFISLEDLEETLAHAFLRELEDAI 1358
            TVAD++ESMEV LLP  ++     ++YKL +K K HDF+S ED E TL   FLRELEDAI
Sbjct: 1236 TVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDFVSSEDCEYTLKFVFLRELEDAI 1295

Query: 1357 EKHVELLCKIGGIENSMSSARSNEVETDEDTSGSISHXXXXXXXXXXXXXXXXXXXXXXD 1178
            E H+ LL KI GI+N  +S+ S + +  E+ + S  H                      D
Sbjct: 1296 ESHLALLSKINGIQNFKTSSESVDSDETEENASSTRH-------EEEMLDDEDEDERTED 1348

Query: 1177 LGSDLQKRKQQTTDEMDYEDGSEDGSVQQESPIEVEKERRKDNRSHDGSATTEDEVLKDT 998
            L SD QKRKQQTTDEMDY+D   +   +  + IE EK  + D   +      E+E+    
Sbjct: 1349 LSSDAQKRKQQTTDEMDYDDDENEDEAETTAEIEDEKSEQTDEIDNG----DEEEI---- 1400

Query: 997  DDENDEDYASKMLYENGEMREPKSS---DXXXXXXXXXXKRGELPMKKNDRRVFVAVNGL 827
             +  +E+  SK+     ++   KSS              K+     K +DR VFV V GL
Sbjct: 1401 GNRGNEEQMSKLQSTEDDISNTKSSKSKTKTKTTVKQNKKKERRSKKDSDRCVFVDVEGL 1460

Query: 826  SFEVHFGFTDEPHLLLGQIAQRTAKKVSMEGSGKISECRMVEYDATEKTVRWDEKKIKKH 647
             FEVHF F +EPH+LL Q+AQ+TAKKV ++ SGKI +CRMV+Y+ TE TV WDE + K+ 
Sbjct: 1461 HFEVHFRFVNEPHILLAQVAQKTAKKVYIKNSGKIDQCRMVKYEVTENTVMWDEYQTKQQ 1520

Query: 646  SDVXXXXXXXXXXXRYWALKAAGTDFNAFWEMQDELDVTRIYSNNIHAVLTTYGVEAARR 467
            S              YWALKAAG DF  FWEMQD+LDVTRIY+NNI A+L TYGVEAAR 
Sbjct: 1521 SQ--------DSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARA 1572

Query: 466  TIITEVKNVFEAYGVKVDYRHLSLIADYMTHTGGYRPMSRHGSIAESLSPLAKMSFETAS 287
            +I+ EVK VF  YGV++D+RHLSLIAD+MTHTGGY+PMSRHGSI+ESLSP  KMSFETAS
Sbjct: 1573 SILREVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETAS 1632

Query: 286  KFIVEAASRGLADDLETPSSRICLGLPVKMGTGSFDLMQKLD 161
            KFIVEAA+ GL D+LETPSSRICLGLPVKMGTG FD+MQKLD
Sbjct: 1633 KFIVEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQKLD 1674


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score = 1509 bits (3908), Expect = 0.0
 Identities = 787/1239 (63%), Positives = 925/1239 (74%), Gaps = 10/1239 (0%)
 Frame = -2

Query: 3847 RLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSSR 3668
            RLTYPER+TPWN  K+RDA++NGPE HPGAIS+AD+++TVKLPSNKKMR+AISRKLPSSR
Sbjct: 477  RLTYPERLTPWNAVKMRDAVINGPENHPGAISFADRIATVKLPSNKKMRVAISRKLPSSR 536

Query: 3667 GVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMHY 3488
            G VTQSG N+EYEFEGK+VYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT RMHY
Sbjct: 537  GAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 596

Query: 3487 ANCSSYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSAV 3308
            ANCS+YNADFDGDEMNVH PQDEIS AEAYNIVNANEQYIVPTKGDTVRGLIQDHIV AV
Sbjct: 597  ANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAV 656

Query: 3307 XXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKPKP 3128
                        EFNQLLYGSGVFA  P   S N + K+SI+D EGV+Q VLPAVWKPKP
Sbjct: 657  ILTMKNTFLSLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSIVDFEGVVQTVLPAVWKPKP 716

Query: 3127 LWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDEKKNSENQPRKEE 2948
            LWTGKQVITALLNHLT GC P +++ + KIP  YF            E +  E Q R+E+
Sbjct: 717  LWTGKQVITALLNHLTNGCPPCTVKNKGKIPYAYF----------LSESRLVEYQSREEQ 766

Query: 2947 KNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXXXXXX 2768
                      E +T+EN  +IWKNELV+GVIDKAQFG+FGLVHT+QE             
Sbjct: 767  ----------EDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSA 816

Query: 2767 XXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILD-QDVGNEVHSKFVNCV-PDIAPKE 2594
               LFTIFLQLHGFTCG+DDL+ILP  D++RKE L+  DVG E H  FV     +I P E
Sbjct: 817  LSRLFTIFLQLHGFTCGIDDLVILPHYDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPLE 876

Query: 2593 LQWELEKVICRNRESASTSLDLMMRRKFKDQQENISKELLLTELLKPFPKNCISLMTVSG 2414
            LQ E+EK I  N+E A+ +LD+ M+ K  ++    +KELLL  LLKPFP+NCI+LMT++G
Sbjct: 877  LQLEIEKAISSNKEVATAALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNCIALMTITG 936

Query: 2413 AKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGLRP 2234
            AKG TVNFQQISS+LGQQ+LEGKRVPRMVSGKTLPCFP WD  SRAGGYV+DRFLSGLRP
Sbjct: 937  AKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPAWDCASRAGGYVSDRFLSGLRP 996

Query: 2233 QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADGSIVQFKYGE 2054
            QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDY+VRDADGSI+QF YGE
Sbjct: 997  QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGE 1056

Query: 2053 DGVDVHRTSFLKNFEALVNNQETLRQKFQYEHEFNAYVDKLPEGLEEDAEIFF-MKLKNR 1877
            DGVDVHRTSFLKNF+AL NNQET+ QK ++  + N+Y++KLP+GL E  + F+  K K  
Sbjct: 1057 DGVDVHRTSFLKNFKALKNNQETICQKLRHGCKLNSYIEKLPDGLGEKVKHFWESKTKKL 1116

Query: 1876 ESE--ELLKVSKISK--RANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPSTQMTL 1709
            E +   L+K  ++ K  +    DFL+LV QKY SSLA  GEPVGV+A QSVGEPSTQMTL
Sbjct: 1117 EKKLGMLVKKEEMVKQLKEEEADFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTL 1176

Query: 1708 NTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGKMKKIT 1529
            NTFHLAGRGEMNVTLGIPRLQEILMTAS+ IKTP++TCPFL  KSK+DA SLL K+KKIT
Sbjct: 1177 NTFHLAGRGEMNVTLGIPRLQEILMTASEAIKTPIMTCPFLGWKSKNDAQSLLAKVKKIT 1236

Query: 1528 VADIVESMEVHLLP--VHKDSEDRIYKLLIKFKPHDFISLEDLEETLAHAFLRELEDAIE 1355
            VAD++ESMEV LLP  ++     ++YKL +K K HDF+S ED E TL   FLRELEDAIE
Sbjct: 1237 VADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDFVSSEDCEYTLKFVFLRELEDAIE 1296

Query: 1354 KHVELLCKIGGIENSMSSARSNEVETDEDTSGSISHXXXXXXXXXXXXXXXXXXXXXXDL 1175
             H+ LL KI GI+N  +S+ S + +  E+ + S                         DL
Sbjct: 1297 SHLALLSKINGIQNFKTSSESVDSDETEENASSTRR-----EEEMLDDDDDDEDERTEDL 1351

Query: 1174 GSDLQKRKQQTTDEMDYEDGSEDGSVQQESPIEVEKERRKDNRSHDGSATTEDEVLKDTD 995
             SD QKRKQQTTDEMDY+D  ++   + E+  E+E E+ +     D      DE  ++  
Sbjct: 1352 SSDAQKRKQQTTDEMDYDDDEDEAEAEAEATAEIEDEKSEQTDEIDNG----DE--EENG 1405

Query: 994  DENDEDYASKMLYENGEMREPKSSDXXXXXXXXXXKRGELPMKK-NDRRVFVAVNGLSFE 818
            D  +E++ SK+     ++   K+S           K+ E   KK +DR VFV V GL FE
Sbjct: 1406 DRGNEEHTSKLQSTEEDISNTKTSKSKTKTTVKQKKKKERRSKKDSDRCVFVDVEGLHFE 1465

Query: 817  VHFGFTDEPHLLLGQIAQRTAKKVSMEGSGKISECRMVEYDATEKTVRWDEKKIKKHSDV 638
            VHF F +EPH+LL Q+AQ+TAKKV ++ SGKI +CRMV+Y+ TE TV WDE + K+    
Sbjct: 1466 VHFRFVNEPHILLAQVAQKTAKKVYVKNSGKIDQCRMVKYEVTENTVMWDENQTKQQRQ- 1524

Query: 637  XXXXXXXXXXXRYWALKAAGTDFNAFWEMQDELDVTRIYSNNIHAVLTTYGVEAARRTII 458
                        YWALKAAG DF  FWEMQD+LDVTRIY+NNI A+L TYGVEAAR +I+
Sbjct: 1525 -------DSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARASIL 1577

Query: 457  TEVKNVFEAYGVKVDYRHLSLIADYMTHTGGYRPMSRHGSIAESLSPLAKMSFETASKFI 278
             EVK VF  YGV++D+RHLSLIAD+MTHTGGY+PMSRHGSI+ESLSP  KMSFETASKFI
Sbjct: 1578 REVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFI 1637

Query: 277  VEAASRGLADDLETPSSRICLGLPVKMGTGSFDLMQKLD 161
            VEAA+ GL D+LETPSSRICLGLPVKMGTG FD+MQ+LD
Sbjct: 1638 VEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQELD 1676


>gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlisea aurea]
          Length = 1626

 Score = 1380 bits (3572), Expect = 0.0
 Identities = 721/1234 (58%), Positives = 887/1234 (71%), Gaps = 8/1234 (0%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSS 3671
            LRLTYPERVTPWN  KLR+A+VNGP++HPGA +Y D V+T+KLP NKK R+A+SRKLPSS
Sbjct: 439  LRLTYPERVTPWNATKLRNAVVNGPDIHPGATTYIDSVATMKLPLNKKARVALSRKLPSS 498

Query: 3670 RGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMH 3491
            RG   + G  S+ +FEGK+VYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE+T RMH
Sbjct: 499  RGATAEVGE-SQLDFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGERTLRMH 557

Query: 3490 YANCSSYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSA 3311
            YANCSSYNADFDGDE+NVH PQDEIS AEAYNIVNANEQYIVPT+GDTVRGLIQDHIV+A
Sbjct: 558  YANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLIQDHIVAA 617

Query: 3310 VXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKPK 3131
            V            EFNQLLYGSGVFA+   S+ +N ++K+S    +G++  +LPA+WKP+
Sbjct: 618  VLLTLKRTFLTCSEFNQLLYGSGVFALGRHSYVSNSSQKVSGHAPDGLINPILPAIWKPE 677

Query: 3130 PLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDEKKNSENQPRKE 2951
            PLWTGKQVI+ALLNH+TRG  P  ++ + K+P  YF   P      +DE +N        
Sbjct: 678  PLWTGKQVISALLNHITRGFAPCIVKNQTKLPSTYFTDNP--AMEDEDEDQN-------- 727

Query: 2950 EKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXXXXX 2771
                           +EN+ ++WKNELV+GVIDKAQFG+FGLVHTVQE            
Sbjct: 728  ---------------AENNFLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSESAGNLLT 772

Query: 2770 XXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILDQ-DVGNEVHSKFVNCVP-DIAPK 2597
                LFT+FLQ+HGFTCGVDDL+ILPD D+KRKE L+Q DVG EVH  F+N  P  I  +
Sbjct: 773  AFSRLFTMFLQIHGFTCGVDDLMILPDYDVKRKEKLEQEDVGEEVHCDFINFKPGQIGRE 832

Query: 2596 ELQWELEKVICRNRESASTSLDLMMRR----KFKDQQENISKELLLTELLKPFPKNCISL 2429
            ELQ E+EK ICR+RESA+  LD+ M+     K   +   + K LL   LLKPFP+NCIS+
Sbjct: 833  ELQLEIEKAICRDRESATALLDMKMKNKLTMKLTTEGSQVLKHLLTDGLLKPFPQNCISV 892

Query: 2428 MTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFL 2249
            MT +GAKG TVNFQQIS++LGQQ+LEGKRVPRMVSGKTLP FPPWDF SRAGG++TDRFL
Sbjct: 893  MTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFPPWDFASRAGGFITDRFL 952

Query: 2248 SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADGSIVQ 2069
            SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKV YDY+VRDADGSI+Q
Sbjct: 953  SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLKVGYDYTVRDADGSIIQ 1012

Query: 2068 FKYGEDGVDVHRTSFLKNFEALVNNQETLRQKFQYEHEFNAYVDKLPEGLEEDAEIFFMK 1889
            F YGEDGVD H+TSFLKNF+AL NNQET++QKFQ +H+FN Y+ KLPEGLEE+A  F  K
Sbjct: 1013 FCYGEDGVDAHKTSFLKNFKALSNNQETIQQKFQNKHQFNFYIKKLPEGLEEEAMHFIQK 1072

Query: 1888 LKNRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPSTQMTL 1709
             +         +S + +  +   F+++V QK+LSSL P GEPVGVIAAQS+GEPSTQMTL
Sbjct: 1073 AQT--------LSSVKQVVDHHKFMRVVEQKFLSSLVPAGEPVGVIAAQSIGEPSTQMTL 1124

Query: 1708 NTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGKMKKIT 1529
            NTFHLAGRGEMNVTLGIPRLQEILMTAS+VI+TP+LTCPFL  +SK +A S++  +KKIT
Sbjct: 1125 NTFHLAGRGEMNVTLGIPRLQEILMTASEVIRTPMLTCPFLQRQSKPNALSVISNLKKIT 1184

Query: 1528 VADIVESMEVHLLPVHKDSEDRIYKLLIKFKPHDFISLEDLEETLAHAFLRELEDAIEKH 1349
            +AD++ESM+V +         RIYKL ++ K  +F+SLED  +TL  +FL+ELEDA+E H
Sbjct: 1185 IADLIESMDVSI--SFHPKVGRIYKLRMRLKDTEFVSLEDTYKTLKTSFLKELEDALENH 1242

Query: 1348 VELLCKIGGIENSMSSARSNEVETDEDTSGSISHXXXXXXXXXXXXXXXXXXXXXXDLGS 1169
            V  L K+  I +  S +R   +   E+   S                         DL S
Sbjct: 1243 VVFLKKVAVINDFASHSRFEALSEGEEDKAS----DGAQEAEEEGDDDGGDSDAGEDLDS 1298

Query: 1168 DLQKRKQQTTDEMDYEDGSEDGSVQQESPIEVEKERRKDNRSHDGSATTEDEVLKDTDDE 989
            D+QKR+QQ  D+MDYED S+  S Q+E   +++K   +++   D      +E   D  D+
Sbjct: 1299 DVQKRRQQARDDMDYEDASD--SEQREEEEDLDKANAEED--DDDDENEWNEKCDDDHDD 1354

Query: 988  NDEDYASKMLYENGEMREPKSSDXXXXXXXXXXKRGELPMKKNDRRVFVAVNGLSFEVHF 809
             D+  + K + E   ++  K S                  K+ +R +++ + GLS EVHF
Sbjct: 1355 YDQRSSEKNMVEKPILKGRKKSVAAITSEKIDLSTMPSTGKRENRAIYMEIEGLSLEVHF 1414

Query: 808  GFTDEPHLLLGQIAQRTAKKVSMEGS-GKISECRMVEYDATEKTVRWDEKKIKKHSDVXX 632
             FT EPH+LL Q+ Q+TAKKV ++ + GK+++C++V+YD  EKTV WD+   KK      
Sbjct: 1415 KFTSEPHVLLAQVVQKTAKKVYVKKTGGKLNQCKLVQYDPDEKTVIWDDD--KKKEKATK 1472

Query: 631  XXXXXXXXXRYWALKAAGTDFNAFWEMQDELDVTRIYSNNIHAVLTTYGVEAARRTIITE 452
                      YWA+KA+G+D  +FWEM D LD+ R+Y NNIH++L TYGVEAA  TII E
Sbjct: 1473 NGRKADDDAAYWAVKASGSDVESFWEMSDYLDLNRLYCNNIHSMLKTYGVEAASATIIRE 1532

Query: 451  VKNVFEAYGVKVDYRHLSLIADYMTHTGGYRPMSRHGSIAESLSPLAKMSFETASKFIVE 272
            +KNVF+ YGVK+DYRHLSLI D+M H GGYRPMSRHGSI +S+SP  KMSFETASKFIVE
Sbjct: 1533 MKNVFDIYGVKIDYRHLSLIGDHMAHAGGYRPMSRHGSIPDSVSPFLKMSFETASKFIVE 1592

Query: 271  AASRGLADDLETPSSRICLGLPVKMGTGS-FDLM 173
            AA  GL DDLE+PSSRICLGLPV++GTG  FDLM
Sbjct: 1593 AAIYGLRDDLESPSSRICLGLPVRVGTGGPFDLM 1626


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1340 bits (3467), Expect = 0.0
 Identities = 729/1244 (58%), Positives = 877/1244 (70%), Gaps = 14/1244 (1%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSS 3671
            LRLTYPE+VTPWNV KLRDAI+NGPE+HPGA  Y DK+STVKL  NKKMRI+ISRKLPSS
Sbjct: 469  LRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSS 528

Query: 3670 RGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMH 3491
            RGVV Q G +S+ EFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKT RMH
Sbjct: 529  RGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 588

Query: 3490 YANCSSYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSA 3311
            YANCS+YNADFDGDEMNVH PQDEIS AEAYNIVNAN QYIVP++GD +RGLIQDHIVSA
Sbjct: 589  YANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSA 648

Query: 3310 VXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKPK 3131
            V           +++NQLLY SG+ +   GSF     KK+S++DSE  MQ +LPA+WKP+
Sbjct: 649  VLLTKKDTFLTREQYNQLLYSSGLSS-GSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPE 707

Query: 3130 PLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDEKKNSENQPRKE 2951
            PLW+GKQVITA+LNH+TRG +PF+ EK+ KIP +YF     + + GK +   S+   R++
Sbjct: 708  PLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSD---RRK 764

Query: 2950 EKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXXXXX 2771
            EK       + E K  E  L+I KNELV+GVIDKAQF ++GLVH VQE            
Sbjct: 765  EK-------RIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLS 817

Query: 2770 XXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILD--QDVGNEVHSKFVNCVPD-IAP 2600
                LFT+FLQ+HGFTCGVDDL+I P+ D+ RK  LD  +++G  VH KF+      I P
Sbjct: 818  VLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDP 877

Query: 2599 KELQWELEKVICRNRESASTSLDLMMRRKFKDQQENISKELLLTELLKPFPKNCISLMTV 2420
             +LQ E+EK+I  N E+A T LD MM+ +  +    ++K+LLL  L+KPFPKNC+SLMT 
Sbjct: 878  VKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTT 937

Query: 2419 SGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGL 2240
            +GAKG TVNF QISSFLGQQDLEGKRVPRMVSGKTLPCFPPWD  +RAGG+++DRFL+GL
Sbjct: 938  TGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGL 997

Query: 2239 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADGSIVQFKY 2060
             PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKVCYDY+VRD+DGSIVQF Y
Sbjct: 998  HPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNY 1057

Query: 2059 GEDGVDVHRTSFLKNFEALVNNQETLRQKFQYEHEFNAYVDKLPEGLEEDAEIFFMK-LK 1883
            G+DGVDVH+TSF+  FEAL  N+E + +KF  + +FN Y+ KLP+ L +  + F    ++
Sbjct: 1058 GDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYIQKLPKELRKKTKKFIEGFME 1117

Query: 1882 NRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPSTQMTLNT 1703
             R+  + +K  K        DF+ LV QKY+SSLA PGEPVGV+AAQSVGEPSTQMTLNT
Sbjct: 1118 ERQDFDNMKKQK--------DFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNT 1169

Query: 1702 FHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGKMKKITVA 1523
            FHLAGRGE+NVTLGIPRLQEILMTA++ IKTP++TCP    +SKDDA  L  K+KK+TVA
Sbjct: 1170 FHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVA 1229

Query: 1522 DIVESMEVHLLP--VHKDSEDRIYKLLIK------FKPHDFISLEDLEETLAHAFLRELE 1367
            DI ESMEV ++P  V       IYKL +K      + PH  ISLED EETL   F+RELE
Sbjct: 1230 DITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELE 1289

Query: 1366 DAIEKHVELLCKIGGIENSMSSARS-NEVETDEDTSGSISHXXXXXXXXXXXXXXXXXXX 1190
            DAI+ H+ LL KI GI+N +  +RS    ETDED SG                       
Sbjct: 1290 DAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGD-----GLAGGNGDEDDDGEDDG 1344

Query: 1189 XXXDLGSDLQKRKQQTTDEMDYEDGSEDGSVQQESPIEVEKERRKDNRSHDGSATTEDEV 1010
               DLG D QKRKQQ +DEMDY  G  +G   +  P     E           +  E+  
Sbjct: 1345 GAEDLGLDAQKRKQQASDEMDY--GDSEGEPDEGEPSAGLTEEIDLVEDEVEISNNEEVG 1402

Query: 1009 LKDTDDENDEDYASKMLYENGEMREPKSSDXXXXXXXXXXKRGELPMKKN-DRRVFVAVN 833
            + D  DE D    SK           KSS           K+    +KK+ DR + V   
Sbjct: 1403 ISDPKDE-DSKVPSK----------SKSSKNKKAKTEAKRKKRFRAIKKDFDRAILVKAK 1451

Query: 832  GLSFEVHFGFTDEPHLLLGQIAQRTAKKVSMEGSGKISECRMVEYDATEKTVRWDEKKIK 653
            G  FEVHF FT+EPH+LL QIAQ+ A KV +  SGKI  C+++  D  +  V +  +  K
Sbjct: 1452 GTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVI--DCNKDQVIYYGRDPK 1509

Query: 652  KHSDVXXXXXXXXXXXRYWALKAAGTDFNAFWEMQDELDVTRIYSNNIHAVLTTYGVEAA 473
            K  ++              AL+ AG DF AFW+MQDELDV  +YSNN+HA+L T+GVEAA
Sbjct: 1510 KRENIPGEEKKKLP-----ALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAA 1564

Query: 472  RRTIITEVKNVFEAYGVKVDYRHLSLIADYMTHTGGYRPMSRHGSIAESLSPLAKMSFET 293
            R TII EV NVF AYGVKV+ RHLSLIAD+MTH+GGYRPM+RHG IAES+SP +KM+FET
Sbjct: 1565 RATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFET 1624

Query: 292  ASKFIVEAASRGLADDLETPSSRICLGLPVKMGTGSFDLMQKLD 161
            ASKFIVEAAS G+ D+LE+ S+RICLGLPVKMGTG FDLMQK++
Sbjct: 1625 ASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIE 1668


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score = 1340 bits (3467), Expect = 0.0
 Identities = 729/1244 (58%), Positives = 877/1244 (70%), Gaps = 14/1244 (1%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSS 3671
            LRLTYPE+VTPWNV KLRDAI+NGPE+HPGA  Y DK+STVKL  NKKMRI+ISRKLPSS
Sbjct: 540  LRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSS 599

Query: 3670 RGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMH 3491
            RGVV Q G +S+ EFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKT RMH
Sbjct: 600  RGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 659

Query: 3490 YANCSSYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSA 3311
            YANCS+YNADFDGDEMNVH PQDEIS AEAYNIVNAN QYIVP++GD +RGLIQDHIVSA
Sbjct: 660  YANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSA 719

Query: 3310 VXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKPK 3131
            V           +++NQLLY SG+ +   GSF     KK+S++DSE  MQ +LPA+WKP+
Sbjct: 720  VLLTKKDTFLTREQYNQLLYSSGLSS-GSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPE 778

Query: 3130 PLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDEKKNSENQPRKE 2951
            PLW+GKQVITA+LNH+TRG +PF+ EK+ KIP +YF     + + GK +   S+   R++
Sbjct: 779  PLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSD---RRK 835

Query: 2950 EKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXXXXX 2771
            EK       + E K  E  L+I KNELV+GVIDKAQF ++GLVH VQE            
Sbjct: 836  EK-------RIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLS 888

Query: 2770 XXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILD--QDVGNEVHSKFVNCVPD-IAP 2600
                LFT+FLQ+HGFTCGVDDL+I P+ D+ RK  LD  +++G  VH KF+      I P
Sbjct: 889  VLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDP 948

Query: 2599 KELQWELEKVICRNRESASTSLDLMMRRKFKDQQENISKELLLTELLKPFPKNCISLMTV 2420
             +LQ E+EK+I  N E+A T LD MM+ +  +    ++K+LLL  L+KPFPKNC+SLMT 
Sbjct: 949  VKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTT 1008

Query: 2419 SGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLSGL 2240
            +GAKG TVNF QISSFLGQQDLEGKRVPRMVSGKTLPCFPPWD  +RAGG+++DRFL+GL
Sbjct: 1009 TGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGL 1068

Query: 2239 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADGSIVQFKY 2060
             PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKVCYDY+VRD+DGSIVQF Y
Sbjct: 1069 HPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNY 1128

Query: 2059 GEDGVDVHRTSFLKNFEALVNNQETLRQKFQYEHEFNAYVDKLPEGLEEDAEIFFMK-LK 1883
            G+DGVDVH+TSF+  FEAL  N+E + +KF  + +FN Y+ KLP+ L +  + F    ++
Sbjct: 1129 GDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYIQKLPKELRKKTKKFIEGFME 1188

Query: 1882 NRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPSTQMTLNT 1703
             R+  + +K  K        DF+ LV QKY+SSLA PGEPVGV+AAQSVGEPSTQMTLNT
Sbjct: 1189 ERQDFDNMKKQK--------DFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNT 1240

Query: 1702 FHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGKMKKITVA 1523
            FHLAGRGE+NVTLGIPRLQEILMTA++ IKTP++TCP    +SKDDA  L  K+KK+TVA
Sbjct: 1241 FHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVA 1300

Query: 1522 DIVESMEVHLLP--VHKDSEDRIYKLLIK------FKPHDFISLEDLEETLAHAFLRELE 1367
            DI ESMEV ++P  V       IYKL +K      + PH  ISLED EETL   F+RELE
Sbjct: 1301 DITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELE 1360

Query: 1366 DAIEKHVELLCKIGGIENSMSSARS-NEVETDEDTSGSISHXXXXXXXXXXXXXXXXXXX 1190
            DAI+ H+ LL KI GI+N +  +RS    ETDED SG                       
Sbjct: 1361 DAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGD-----GLAGGNGDEDDDGEDDG 1415

Query: 1189 XXXDLGSDLQKRKQQTTDEMDYEDGSEDGSVQQESPIEVEKERRKDNRSHDGSATTEDEV 1010
               DLG D QKRKQQ +DEMDY  G  +G   +  P     E           +  E+  
Sbjct: 1416 GAEDLGLDAQKRKQQASDEMDY--GDSEGEPDEGEPSAGLTEEIDLVEDEVEISNNEEVG 1473

Query: 1009 LKDTDDENDEDYASKMLYENGEMREPKSSDXXXXXXXXXXKRGELPMKKN-DRRVFVAVN 833
            + D  DE D    SK           KSS           K+    +KK+ DR + V   
Sbjct: 1474 ISDPKDE-DSKVPSK----------SKSSKNKKAKTEAKRKKRFRAIKKDFDRAILVKAK 1522

Query: 832  GLSFEVHFGFTDEPHLLLGQIAQRTAKKVSMEGSGKISECRMVEYDATEKTVRWDEKKIK 653
            G  FEVHF FT+EPH+LL QIAQ+ A KV +  SGKI  C+++  D  +  V +  +  K
Sbjct: 1523 GTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVI--DCNKDQVIYYGRDPK 1580

Query: 652  KHSDVXXXXXXXXXXXRYWALKAAGTDFNAFWEMQDELDVTRIYSNNIHAVLTTYGVEAA 473
            K  ++              AL+ AG DF AFW+MQDELDV  +YSNN+HA+L T+GVEAA
Sbjct: 1581 KRENIPGEEKKKLP-----ALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAA 1635

Query: 472  RRTIITEVKNVFEAYGVKVDYRHLSLIADYMTHTGGYRPMSRHGSIAESLSPLAKMSFET 293
            R TII EV NVF AYGVKV+ RHLSLIAD+MTH+GGYRPM+RHG IAES+SP +KM+FET
Sbjct: 1636 RATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFET 1695

Query: 292  ASKFIVEAASRGLADDLETPSSRICLGLPVKMGTGSFDLMQKLD 161
            ASKFIVEAAS G+ D+LE+ S+RICLGLPVKMGTG FDLMQK++
Sbjct: 1696 ASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIE 1739


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score = 1263 bits (3269), Expect = 0.0
 Identities = 694/1256 (55%), Positives = 853/1256 (67%), Gaps = 26/1256 (2%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSS 3671
            ++LTYPERVTPWN+ KLR+A++NG E HPGA  Y DK+S  KLP  +K RI+ISRKLPSS
Sbjct: 468  VKLTYPERVTPWNIAKLRNAVINGSECHPGATHYVDKLSINKLPPARKARISISRKLPSS 527

Query: 3670 RGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMH 3491
            RG VTQ+G  SE EFEGKIVYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT RMH
Sbjct: 528  RGAVTQAGKGSECEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 587

Query: 3490 YANCS-SYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVS 3314
            YANCS +YNADFDGDEMNVH PQDE+S AEAYNIVNAN Q++ P+ G+ +RGLIQDHIVS
Sbjct: 588  YANCSITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQFVRPSNGEPLRGLIQDHIVS 647

Query: 3313 AVXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKP 3134
            AV           DEFNQLLY SGV  V P SF     +K+    SE  +Q + PA+WKP
Sbjct: 648  AVLLTKKDTFLSQDEFNQLLYSSGVSTVGPNSFHGRPGQKVLWSRSEDEIQTLPPAIWKP 707

Query: 3133 KPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDEKKNSENQPRK 2954
            KPLWTGKQVITA+LNH+T    PF++EK+ KIP  +F+    + +P ++EK         
Sbjct: 708  KPLWTGKQVITAILNHITSDHPPFTVEKDAKIPSNFFKSRANEDKPCQEEKS-------- 759

Query: 2953 EEKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXXXX 2774
             +K+ P     +E +  E  ++++KNELV+GVIDK QFG++GLVHTV E           
Sbjct: 760  -DKDAP-----AEKEPDEEKMLVYKNELVRGVIDKGQFGEYGLVHTVHELLGSHTAGILL 813

Query: 2773 XXXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILD--QDVGNEVHSKFVNCVPD--- 2609
                 LFT +LQ+HGFTCGVDDL+IL +KD +RK+ L+  +  G  VH  F+    +   
Sbjct: 814  SVLSRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGEAVHRNFIGIKDEKIK 873

Query: 2608 IAPKELQWELEKVICRNRESASTSLDLMMRRKFKDQQEN-ISKELLLTELLKPFPKNCIS 2432
            I P  +Q  +EK I  + +SA   LD  M  +   +  + +   LL   LLKP  KNCIS
Sbjct: 874  IDPVAMQLNIEKTIRSDGDSALAYLDRQMSNELNTKTSSGVISNLLSDGLLKPSGKNCIS 933

Query: 2431 LMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRF 2252
            LMT SGAKG  VNFQQISSFLGQQ+LEGKRVPRMVSGKTLPCF PWD+ +R+GGY+TDRF
Sbjct: 934  LMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYITDRF 993

Query: 2251 LSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADGSIV 2072
            L+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD++VRDADGS+V
Sbjct: 994  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGSVV 1053

Query: 2071 QFKYGEDGVDVHRTSFLKNFEALVNNQETLRQKFQYE-HEFNAYVDKLPEGLEEDAEIFF 1895
            QF YGEDGVDVH+TSF+  F+ L  NQ+ + ++   +   FN+Y+ +LPE L+E A+ F 
Sbjct: 1054 QFYYGEDGVDVHQTSFIAKFKELALNQDMIYKRSGGQLGAFNSYISELPEALKEKADRFL 1113

Query: 1894 --MKLKNRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPST 1721
                +  R +  L+K         R D   L+ QK+L SLA PGEPVGV+AAQSVGEPST
Sbjct: 1114 DDFSIMGRIASNLVK---------REDLYNLMKQKFLLSLAQPGEPVGVLAAQSVGEPST 1164

Query: 1720 QMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGKM 1541
            QMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS  IKTP++TCP    ++ +DA+ L  K+
Sbjct: 1165 QMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIKTPIMTCPLQEGRTNEDADHLADKL 1224

Query: 1540 KKITVADIVESMEVHLLP--VHKDSEDRIYKLLIK-FKPHDF-----ISLEDLEETLAHA 1385
            +K+TVADIVESMEV ++P  +      RIYKL +K ++P  +     IS+ED EETL   
Sbjct: 1225 RKVTVADIVESMEVSVVPFAIQDGGVCRIYKLKMKLYRPAHYPQYANISVEDWEETLEVV 1284

Query: 1384 FLRELEDAIEKHVELLCKIGGIENSMSSARSN-EVETDEDTSGSISHXXXXXXXXXXXXX 1208
            FLRELEDAI+ H+ LL +I GI++ +  +RS    E DED +G +SH             
Sbjct: 1285 FLRELEDAIQNHMFLLSRISGIKDFLPESRSRASGEADEDVAGDMSH-----REERDDDN 1339

Query: 1207 XXXXXXXXXDLGSDLQKRKQQTTDEMDYEDGSEDGSVQQESPIEVEKERRKDNRSHDGSA 1028
                     DLG D QKRK Q TDEMDY+DG E+   + ES      E      S     
Sbjct: 1340 DDDDGERADDLGLDAQKRKLQATDEMDYDDGFEEELNEGES---TASEEESGFESEIDQG 1396

Query: 1027 TTEDEVLKDTDDENDEDYASKMLYENGEMREPKSSDXXXXXXXXXXKRGELPMKKN---- 860
              E E+  D   +N+      +   +    + K+++          K+ +   K+     
Sbjct: 1397 DNETEISNDVMLDNEASETLPLRKPSKPKSKKKAAESPSHGEKSKDKKKKPKAKRKSRIS 1456

Query: 859  ---DRRVFVAVNGLSFEVHFGFTDEPHLLLGQIAQRTAKKVSMEGSGKISECRMVEYDAT 689
               DR +FV    + FEVHF FT+EPH+LL +IAQ+TAKKV ++  GKI +CR+   D  
Sbjct: 1457 KDFDRAIFVEARKMHFEVHFKFTNEPHILLAEIAQKTAKKVYIQNPGKIEQCRVT--DCK 1514

Query: 688  EKTVRWDEKKIKKHSDVXXXXXXXXXXXRYWALKAAGTDFNAFWEMQDELDVTRIYSNNI 509
            E  V +  K  K+  D+              AL A G DFN FW+MQD LDV  IYSNNI
Sbjct: 1515 ESQVIYYGKDPKERVDLKPDVKEKVP-----ALHATGVDFNTFWKMQDHLDVRYIYSNNI 1569

Query: 508  HAVLTTYGVEAARRTIITEVKNVFEAYGVKVDYRHLSLIADYMTHTGGYRPMSRHGSIAE 329
            HA+L TYGVEAAR TII E+ +VF++YG+ V  RHLSLIAD+MTHTGGYRPMSR G IAE
Sbjct: 1570 HAMLKTYGVEAARETIIREINHVFKSYGIAVSNRHLSLIADFMTHTGGYRPMSRMGGIAE 1629

Query: 328  SLSPLAKMSFETASKFIVEAASRGLADDLETPSSRICLGLPVKMGTGSFDLMQKLD 161
            S+SP +KMSFETASKFIVEAA  G  D+LETPS+RICLGLPVKMGTGSFDLMQKL+
Sbjct: 1630 SISPFSKMSFETASKFIVEAALHGEIDNLETPSARICLGLPVKMGTGSFDLMQKLE 1685


>gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
          Length = 1400

 Score = 1259 bits (3259), Expect = 0.0
 Identities = 705/1252 (56%), Positives = 858/1252 (68%), Gaps = 22/1252 (1%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSS 3671
            LRLTYPERVTPWNV KLR+AI+NG E HPGA  Y DK+ST +LP ++K RI+ISRKLPSS
Sbjct: 184  LRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSS 243

Query: 3670 RGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMH 3491
            RG + Q G N +YEFEGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT RMH
Sbjct: 244  RGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMH 303

Query: 3490 YANCSSYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSA 3311
            YANCS+YNADFDGDE+NVH PQDEIS AEAYNIVNAN QY+ P+ G+ +R LIQDHIVSA
Sbjct: 304  YANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSA 363

Query: 3310 VXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKPK 3131
            V           DEFNQLLY SGV ++A  SFS    +K+ +  SE  M  ++PA+ KPK
Sbjct: 364  VLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPK 423

Query: 3130 PLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDEKKNSENQPRKE 2951
            PLWTGKQVI+++L+H+TRG  PF++ K  KIP  +F+    K      +    ENQP+ +
Sbjct: 424  PLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNK----NKQSSREENQPKND 479

Query: 2950 EKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXXXXX 2771
             +        S+ +  E  ++I++N+LV+GVIDKAQF  +GLVHTVQE            
Sbjct: 480  GQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLS 539

Query: 2770 XXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILD--QDVGNEVHSKF--VNCVPDIA 2603
                LFT+FLQ+HGFTCGVDDL+I+ DKD++RK+ L+  +    E H +   V    + A
Sbjct: 540  VFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVNSETA 599

Query: 2602 PKELQWELEKVICRNRESASTSLDLMMRRKFKDQQENISK----ELLLTELLKPFPKNCI 2435
            P ELQ E+E+ I R+ E+A T+LD   R+      EN SK    ELL   L+K   +NCI
Sbjct: 600  PTELQLEIERTIRRDGETALTALD---RKMISVLNENSSKGVLTELLSEGLVKSMGENCI 656

Query: 2434 SLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDR 2255
            SLMT SGAKG  VNFQQISSFLGQQ+LEGKRVPRMVSGKTLPCF PWD+ +RAGG+++DR
Sbjct: 657  SLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDR 716

Query: 2254 FLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADGSI 2075
            FLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD++VRDADGSI
Sbjct: 717  FLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSI 776

Query: 2074 VQFKYGEDGVDVHRTSFLKNFEALVNNQETLRQKFQYEHEFNAYVDK-LPEGLEEDAEIF 1898
            VQF YGEDG+DVH+TSF+  FEAL  NQ+ + +K   +       DK LP+GL   AE F
Sbjct: 777  VQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQF 836

Query: 1897 FMKLKNRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPSTQ 1718
                  RE  +  +  KI  +    DFL L+  K+LSSLA PGEPVGV+AAQSVGEPSTQ
Sbjct: 837  I-----REEIKKYQHQKIKPK----DFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQ 887

Query: 1717 MTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGKMK 1538
            MTLNTFHLAGRGEMNVTLGIPRLQEILMTAS  I+TPV+TCP    K+K+DA  L  KMK
Sbjct: 888  MTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMK 947

Query: 1537 KITVADIVESMEVHLLPVHKDSED--RIYKLLI------KFKPHDFISLEDLEETLAHAF 1382
            KITVADI+ESMEV + P   D+ D   IYKL +      K+  +  I+++D E  L   F
Sbjct: 948  KITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVF 1007

Query: 1381 LRELEDAIEKHVELLCKIGGIENSM-SSARSNEVETDEDTSGSISHXXXXXXXXXXXXXX 1205
            LRELEDAI+ H+ LL KI GI+  M  S R+   E DED S   S               
Sbjct: 1008 LRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDEDVSEGRSR--ETKNDDDDDDDD 1065

Query: 1204 XXXXXXXXDLGSDLQKRKQQTTDEMDYEDGSEDGSVQQESPIEVEKERRKDNRSHDGSAT 1025
                    DLG D QK+KQQTTDEMDYED SE   V+Q     +     + + S D + T
Sbjct: 1066 ADDEERAEDLGLDAQKQKQQTTDEMDYEDDSE---VEQNEGASLAALESEIDMSEDETGT 1122

Query: 1024 TEDEVLKDTDDENDEDYASKMLYENGEMREPKS-SDXXXXXXXXXXKRGELPMKKNDRRV 848
             +  ++  +D+  DE   S    EN     PKS  +           + +   K++DR +
Sbjct: 1123 IQINMI-GSDNGKDEISQSSPNLEN--RSNPKSREEKTGSEPKRKKMKAKFVRKESDRAI 1179

Query: 847  FVAVNGLSFEVHFGFTDEPHLLLGQIAQRTAKKVSMEGSGKISECRMVEYDATEKTVRW- 671
            F A+ GL FEVHF   +EPH+LL QIA++TAKKV ++  GKI +CR+   D +E  V + 
Sbjct: 1180 FNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVT--DCSENQVFYY 1237

Query: 670  --DEKKIKKHSDVXXXXXXXXXXXRYWALKAAGTDFNAFWEMQDELDVTRIYSNNIHAVL 497
              D KK K  SD            +  AL   G DF AFW+M+D +DV  +YSN+IHA+L
Sbjct: 1238 GEDPKKRKSPSD----------KEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAML 1287

Query: 496  TTYGVEAARRTIITEVKNVFEAYGVKVDYRHLSLIADYMTHTGGYRPMSRHGSIAESLSP 317
             TYGVEAAR TII E+ +VF +YG+ V+ RHL+LIAD+MTH+G YRPMSR G IAES+SP
Sbjct: 1288 NTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISP 1347

Query: 316  LAKMSFETASKFIVEAASRGLADDLETPSSRICLGLPVKMGTGSFDLMQKLD 161
             +KMSFETASKFIVEAA  GL D+LETPSSRICLGLPVKMGTGSFDLMQK++
Sbjct: 1348 FSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVE 1399


>gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
          Length = 1397

 Score = 1254 bits (3245), Expect = 0.0
 Identities = 703/1250 (56%), Positives = 856/1250 (68%), Gaps = 20/1250 (1%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSS 3671
            LRLTYPERVTPWNV KLR+AI+NG E HPGA  Y DK+ST +LP ++K RI+ISRKLPSS
Sbjct: 184  LRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSS 243

Query: 3670 RGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMH 3491
            RG + Q G N +YEFEGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT RMH
Sbjct: 244  RGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMH 303

Query: 3490 YANCSSYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSA 3311
            YANCS+YNADFDGDE+NVH PQDEIS AEAYNIVNAN QY+ P+ G+ +R LIQDHIVSA
Sbjct: 304  YANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSA 363

Query: 3310 VXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKPK 3131
            V           DEFNQLLY SGV ++A  SFS    +K+ +  SE  M  ++PA+ KPK
Sbjct: 364  VLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPK 423

Query: 3130 PLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDEKKNSENQPRKE 2951
            PLWTGKQVI+++L+H+TRG  PF++ K  KIP  +F+    K      +    ENQP+ +
Sbjct: 424  PLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNK----NKQSSREENQPKND 479

Query: 2950 EKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXXXXX 2771
             +        S+ +  E  ++I++N+LV+GVIDKAQF  +GLVHTVQE            
Sbjct: 480  GQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLS 539

Query: 2770 XXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILD--QDVGNEVHSKFVNCVPDIAPK 2597
                LFT+FLQ+HGFTCGVDDL+I+ DKD++RK+ L+  +    E H +    V   +  
Sbjct: 540  VFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFG-VKVNSET 598

Query: 2596 ELQWELEKVICRNRESASTSLDLMMRRKFKDQQENISK----ELLLTELLKPFPKNCISL 2429
            ELQ E+E+ I R+ E+A T+LD   R+      EN SK    ELL   L+K   +NCISL
Sbjct: 599  ELQLEIERTIRRDGETALTALD---RKMISVLNENSSKGVLTELLSEGLVKSMGENCISL 655

Query: 2428 MTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFL 2249
            MT SGAKG  VNFQQISSFLGQQ+LEGKRVPRMVSGKTLPCF PWD+ +RAGG+++DRFL
Sbjct: 656  MTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFL 715

Query: 2248 SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADGSIVQ 2069
            SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD++VRDADGSIVQ
Sbjct: 716  SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQ 775

Query: 2068 FKYGEDGVDVHRTSFLKNFEALVNNQETLRQKFQYEHEFNAYVDK-LPEGLEEDAEIFFM 1892
            F YGEDG+DVH+TSF+  FEAL  NQ+ + +K   +       DK LP+GL   AE F  
Sbjct: 776  FIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFI- 834

Query: 1891 KLKNRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPSTQMT 1712
                RE  +  +  KI  +    DFL L+  K+LSSLA PGEPVGV+AAQSVGEPSTQMT
Sbjct: 835  ----REEIKKYQHQKIKPK----DFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMT 886

Query: 1711 LNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGKMKKI 1532
            LNTFHLAGRGEMNVTLGIPRLQEILMTAS  I+TPV+TCP    K+K+DA  L  KMKKI
Sbjct: 887  LNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKI 946

Query: 1531 TVADIVESMEVHLLPVHKDSED--RIYKLLI------KFKPHDFISLEDLEETLAHAFLR 1376
            TVADI+ESMEV + P   D+ D   IYKL +      K+  +  I+++D E  L   FLR
Sbjct: 947  TVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLR 1006

Query: 1375 ELEDAIEKHVELLCKIGGIENSM-SSARSNEVETDEDTSGSISHXXXXXXXXXXXXXXXX 1199
            ELEDAI+ H+ LL KI GI+  M  S R+   E DED S   S                 
Sbjct: 1007 ELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDEDVSEGRSR--ETKNDDDDDDDDAD 1064

Query: 1198 XXXXXXDLGSDLQKRKQQTTDEMDYEDGSEDGSVQQESPIEVEKERRKDNRSHDGSATTE 1019
                  DLG D QK+KQQTTDEMDYED SE   V+Q     +     + + S D + T +
Sbjct: 1065 DEERAEDLGLDAQKQKQQTTDEMDYEDDSE---VEQNEGASLAALESEIDMSEDETGTIQ 1121

Query: 1018 DEVLKDTDDENDEDYASKMLYENGEMREPKS-SDXXXXXXXXXXKRGELPMKKNDRRVFV 842
              ++  +D+  DE   S    EN     PKS  +           + +   K++DR +F 
Sbjct: 1122 INMI-GSDNGKDEISQSSPNLEN--RSNPKSREEKTGSEPKRKKMKAKFVRKESDRAIFN 1178

Query: 841  AVNGLSFEVHFGFTDEPHLLLGQIAQRTAKKVSMEGSGKISECRMVEYDATEKTVRW--- 671
            A+ GL FEVHF   +EPH+LL QIA++TAKKV ++  GKI +CR+   D +E  V +   
Sbjct: 1179 AIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVT--DCSENQVFYYGE 1236

Query: 670  DEKKIKKHSDVXXXXXXXXXXXRYWALKAAGTDFNAFWEMQDELDVTRIYSNNIHAVLTT 491
            D KK K  SD            +  AL   G DF AFW+M+D +DV  +YSN+IHA+L T
Sbjct: 1237 DPKKRKSPSD----------KEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNT 1286

Query: 490  YGVEAARRTIITEVKNVFEAYGVKVDYRHLSLIADYMTHTGGYRPMSRHGSIAESLSPLA 311
            YGVEAAR TII E+ +VF +YG+ V+ RHL+LIAD+MTH+G YRPMSR G IAES+SP +
Sbjct: 1287 YGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFS 1346

Query: 310  KMSFETASKFIVEAASRGLADDLETPSSRICLGLPVKMGTGSFDLMQKLD 161
            KMSFETASKFIVEAA  GL D+LETPSSRICLGLPVKMGTGSFDLMQK++
Sbjct: 1347 KMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVE 1396


>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score = 1254 bits (3245), Expect = 0.0
 Identities = 703/1250 (56%), Positives = 856/1250 (68%), Gaps = 20/1250 (1%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSS 3671
            LRLTYPERVTPWNV KLR+AI+NG E HPGA  Y DK+ST +LP ++K RI+ISRKLPSS
Sbjct: 476  LRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSS 535

Query: 3670 RGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMH 3491
            RG + Q G N +YEFEGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT RMH
Sbjct: 536  RGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMH 595

Query: 3490 YANCSSYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSA 3311
            YANCS+YNADFDGDE+NVH PQDEIS AEAYNIVNAN QY+ P+ G+ +R LIQDHIVSA
Sbjct: 596  YANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSA 655

Query: 3310 VXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKPK 3131
            V           DEFNQLLY SGV ++A  SFS    +K+ +  SE  M  ++PA+ KPK
Sbjct: 656  VLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPK 715

Query: 3130 PLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDEKKNSENQPRKE 2951
            PLWTGKQVI+++L+H+TRG  PF++ K  KIP  +F+    K      +    ENQP+ +
Sbjct: 716  PLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNK----NKQSSREENQPKND 771

Query: 2950 EKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXXXXX 2771
             +        S+ +  E  ++I++N+LV+GVIDKAQF  +GLVHTVQE            
Sbjct: 772  GQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLS 831

Query: 2770 XXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILD--QDVGNEVHSKFVNCVPDIAPK 2597
                LFT+FLQ+HGFTCGVDDL+I+ DKD++RK+ L+  +    E H +    V   +  
Sbjct: 832  VFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFG-VKVNSET 890

Query: 2596 ELQWELEKVICRNRESASTSLDLMMRRKFKDQQENISK----ELLLTELLKPFPKNCISL 2429
            ELQ E+E+ I R+ E+A T+LD   R+      EN SK    ELL   L+K   +NCISL
Sbjct: 891  ELQLEIERTIRRDGETALTALD---RKMISVLNENSSKGVLTELLSEGLVKSMGENCISL 947

Query: 2428 MTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFL 2249
            MT SGAKG  VNFQQISSFLGQQ+LEGKRVPRMVSGKTLPCF PWD+ +RAGG+++DRFL
Sbjct: 948  MTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFL 1007

Query: 2248 SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADGSIVQ 2069
            SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD++VRDADGSIVQ
Sbjct: 1008 SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQ 1067

Query: 2068 FKYGEDGVDVHRTSFLKNFEALVNNQETLRQKFQYEHEFNAYVDK-LPEGLEEDAEIFFM 1892
            F YGEDG+DVH+TSF+  FEAL  NQ+ + +K   +       DK LP+GL   AE F  
Sbjct: 1068 FIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFI- 1126

Query: 1891 KLKNRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPSTQMT 1712
                RE  +  +  KI  +    DFL L+  K+LSSLA PGEPVGV+AAQSVGEPSTQMT
Sbjct: 1127 ----REEIKKYQHQKIKPK----DFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMT 1178

Query: 1711 LNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGKMKKI 1532
            LNTFHLAGRGEMNVTLGIPRLQEILMTAS  I+TPV+TCP    K+K+DA  L  KMKKI
Sbjct: 1179 LNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKI 1238

Query: 1531 TVADIVESMEVHLLPVHKDSED--RIYKLLI------KFKPHDFISLEDLEETLAHAFLR 1376
            TVADI+ESMEV + P   D+ D   IYKL +      K+  +  I+++D E  L   FLR
Sbjct: 1239 TVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLR 1298

Query: 1375 ELEDAIEKHVELLCKIGGIENSM-SSARSNEVETDEDTSGSISHXXXXXXXXXXXXXXXX 1199
            ELEDAI+ H+ LL KI GI+  M  S R+   E DED S   S                 
Sbjct: 1299 ELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDEDVSEGRSR--ETKNDDDDDDDDAD 1356

Query: 1198 XXXXXXDLGSDLQKRKQQTTDEMDYEDGSEDGSVQQESPIEVEKERRKDNRSHDGSATTE 1019
                  DLG D QK+KQQTTDEMDYED SE   V+Q     +     + + S D + T +
Sbjct: 1357 DEERAEDLGLDAQKQKQQTTDEMDYEDDSE---VEQNEGASLAALESEIDMSEDETGTIQ 1413

Query: 1018 DEVLKDTDDENDEDYASKMLYENGEMREPKS-SDXXXXXXXXXXKRGELPMKKNDRRVFV 842
              ++  +D+  DE   S    EN     PKS  +           + +   K++DR +F 
Sbjct: 1414 INMI-GSDNGKDEISQSSPNLEN--RSNPKSREEKTGSEPKRKKMKAKFVRKESDRAIFN 1470

Query: 841  AVNGLSFEVHFGFTDEPHLLLGQIAQRTAKKVSMEGSGKISECRMVEYDATEKTVRW--- 671
            A+ GL FEVHF   +EPH+LL QIA++TAKKV ++  GKI +CR+   D +E  V +   
Sbjct: 1471 AIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVT--DCSENQVFYYGE 1528

Query: 670  DEKKIKKHSDVXXXXXXXXXXXRYWALKAAGTDFNAFWEMQDELDVTRIYSNNIHAVLTT 491
            D KK K  SD            +  AL   G DF AFW+M+D +DV  +YSN+IHA+L T
Sbjct: 1529 DPKKRKSPSD----------KEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNT 1578

Query: 490  YGVEAARRTIITEVKNVFEAYGVKVDYRHLSLIADYMTHTGGYRPMSRHGSIAESLSPLA 311
            YGVEAAR TII E+ +VF +YG+ V+ RHL+LIAD+MTH+G YRPMSR G IAES+SP +
Sbjct: 1579 YGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFS 1638

Query: 310  KMSFETASKFIVEAASRGLADDLETPSSRICLGLPVKMGTGSFDLMQKLD 161
            KMSFETASKFIVEAA  GL D+LETPSSRICLGLPVKMGTGSFDLMQK++
Sbjct: 1639 KMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVE 1688


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score = 1243 bits (3216), Expect = 0.0
 Identities = 684/1251 (54%), Positives = 845/1251 (67%), Gaps = 21/1251 (1%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKL--PSNKKMRIAISRKLP 3677
            LRLTYPERVT WNV KLR+AI+NGPE HPGA  Y DK++TVKL    ++K RI+ISRKLP
Sbjct: 446  LRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLP 505

Query: 3676 SSRGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFR 3497
            SSRGVV   G + +YEFEGKIV RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKT R
Sbjct: 506  SSRGVVVDQGCD-DYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIR 564

Query: 3496 MHYANCS-SYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHI 3320
            MHYANCS +YNADFDGDEMNVH PQDEIS AEAYNIVNAN QY+ PT G+ +R LIQDHI
Sbjct: 565  MHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHI 624

Query: 3319 VSAVXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVW 3140
            +SAV           DEF+QLLY SG+      + S    +KI  +D +  M  VLPAVW
Sbjct: 625  ISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVW 684

Query: 3139 KPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDEKKNSENQP 2960
            KP+PLWTGKQV+TALL+H+T+G  PF +EK++KIP  +F+             ++  N  
Sbjct: 685  KPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFFKC------------RDMGNNS 732

Query: 2959 RKEEKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXX 2780
             K++++T    +K+  +  ++SL+I+KNELV+GVIDKAQFG +GLVHTVQE         
Sbjct: 733  SKKKEHTKVDKLKAA-RLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGL 791

Query: 2779 XXXXXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILD--QDVGNEVHSKFVNCVPD- 2609
                   LFT+FLQ HGFTCGVDDL+++   D +R++ L   + +G +VH  F+  V D 
Sbjct: 792  LLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLK-VKDG 850

Query: 2608 --IAPKELQWELEKVICRNRESASTSLDLMMRRKFKDQQEN--ISKELLLTELLKPFPKN 2441
              + P  LQ  +EK I  N E+A TSLD  M  +  ++  N  + K+LL   LLKP  KN
Sbjct: 851  EKLDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKN 910

Query: 2440 CISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVT 2261
            CISLMT SGAKGGT NFQQISS LGQQ LEGKRVPRMVSGKTLPCFPPWD+ SRAGG++ 
Sbjct: 911  CISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIV 970

Query: 2260 DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADG 2081
            DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK+CYD++VRDADG
Sbjct: 971  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADG 1030

Query: 2080 SIVQFKYGEDGVDVHRTSFLKNFEALVNNQETLRQKFQYE-HEFNAYVDKLPEGLEEDAE 1904
            S++QF+YGEDGVDVH+T+F+  FEAL  NQ+ L +   ++  ++N ++++LP  L E  E
Sbjct: 1031 SVIQFQYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGE 1090

Query: 1903 IFFMKLKNRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPS 1724
              +  L            K+     + DF++L+  KYLSSLA PGEPVGV+AAQS+GEPS
Sbjct: 1091 FIYNSLSK---------DKVPGLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPS 1141

Query: 1723 TQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGK 1544
            TQMTLNTFH  GRGEMNVTLGI RLQEILMTAS  IKTP++TCP     S D A  L  K
Sbjct: 1142 TQMTLNTFHHVGRGEMNVTLGILRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANK 1201

Query: 1543 MKKITVADIVESMEVHLLPVHKDSED--RIYKLLIKFKP------HDFISLEDLEETLAH 1388
            +KKITVADI+ESM V ++P  +   +   IYKL I F P      H  IS EDLE TL  
Sbjct: 1202 LKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLET 1261

Query: 1387 AFLRELEDAIEKHVELLCKIGGIENSMSSARSNEVETDEDTSGSISHXXXXXXXXXXXXX 1208
             FL ELE  IE+ + LL KI GI+N +  ++S      ++ S S                
Sbjct: 1262 VFLEELEGLIEREMVLLSKINGIKNFVPDSQSKGSSEGDEVSSS------RQKENDDDDD 1315

Query: 1207 XXXXXXXXXDLGSDLQKRKQQTTDEMDYEDGSEDGSVQQESPIEVEKERRKDNRSHDGSA 1028
                     DLGSD++K+K Q  DEMDYED SED    +ES    E E    ++  +   
Sbjct: 1316 EGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSEDDLNAKESSTGFESE---VDQGDEAEI 1372

Query: 1027 TTED--EVLKDTDDENDEDYASKMLYENGEMREPKSSDXXXXXXXXXXKRGELPMKKNDR 854
            T  D  E++KD+  EN  +        + E     S +           + EL  K+ DR
Sbjct: 1373 TNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSKE-------KKKVKSELVRKETDR 1425

Query: 853  RVFVAVNGLSFEVHFGFTDEPHLLLGQIAQRTAKKVSMEGSGKISECRMVEYDATEKTVR 674
             +FV      FEVHF FT+EPH LL QI QR A+KVS++ SGKI +C+ +     E  V 
Sbjct: 1426 SIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQI--TCKEGQVI 1483

Query: 673  WDEKKIKKHSDVXXXXXXXXXXXRYWALKAAGTDFNAFWEMQDELDVTRIYSNNIHAVLT 494
            +    +K+  ++              AL+ +G DF   WEMQDELDV  IYSN+IHA+L 
Sbjct: 1484 YHGNNLKERKNLKPEEKEKIP-----ALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQ 1538

Query: 493  TYGVEAARRTIITEVKNVFEAYGVKVDYRHLSLIADYMTHTGGYRPMSRHGSIAESLSPL 314
            TYGVEAAR TII E++N+F +YG+ V+ RHLSL+ADYMTH+GGYRPMSR G I++S+SP 
Sbjct: 1539 TYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPF 1598

Query: 313  AKMSFETASKFIVEAASRGLADDLETPSSRICLGLPVKMGTGSFDLMQKLD 161
            ++M+FETA KFIV+AA  G  D+LETPSSRICLGLPVKMGTGSFDLMQK++
Sbjct: 1599 SRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIE 1649


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score = 1239 bits (3207), Expect = 0.0
 Identities = 684/1251 (54%), Positives = 840/1251 (67%), Gaps = 21/1251 (1%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKL--PSNKKMRIAISRKLP 3677
            LRLTYPERVT WNV KLR+AI+NGPE HPGA  Y DK++TVKL    ++K RI+ISRKLP
Sbjct: 452  LRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLP 511

Query: 3676 SSRGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFR 3497
            SSRGVV   G + +YEFEGKIV RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKT R
Sbjct: 512  SSRGVVVDQGCD-DYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIR 570

Query: 3496 MHYANCS-SYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHI 3320
            MHYANCS +YNADFDGDEMNVH PQDEIS AEAYNIVNAN QY+ PT G+ +R LIQDHI
Sbjct: 571  MHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHI 630

Query: 3319 VSAVXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVW 3140
            +SAV           DEF+QLLY SG+      + S    +KI  +D +  M  VLPAVW
Sbjct: 631  ISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVW 690

Query: 3139 KPKPLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDEKKNSENQP 2960
            KP+PLWTGKQV+TALL+H+T+G  PF +EK++KIP  +                  E   
Sbjct: 691  KPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFLIL--------------DEGNS 736

Query: 2959 RKEEKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXX 2780
            +K+E    ++L  + +   ++SL+I+KNELV+GVIDKAQFG +GLVHTVQE         
Sbjct: 737  KKKEHTKVDKLKAARL--DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGL 794

Query: 2779 XXXXXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILD--QDVGNEVHSKFVNCVPD- 2609
                   LFT+FLQ HGFTCGVDDL+++   D +R++ L   + +G +VH  F+  V D 
Sbjct: 795  LLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLK-VKDG 853

Query: 2608 --IAPKELQWELEKVICRNRESASTSLDLMMRRKFKDQQEN--ISKELLLTELLKPFPKN 2441
              + P  LQ  +EK I  N E+A TSLD  M  +  ++  N  + K+LL   LLKP  KN
Sbjct: 854  EKLDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKN 913

Query: 2440 CISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVT 2261
            CISLMT SGAKGGT NFQQISS LGQQ LEGKRVPRMVSGKTLPCFPPWD+ SRAGG++ 
Sbjct: 914  CISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIV 973

Query: 2260 DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADG 2081
            DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK+CYD++VRDADG
Sbjct: 974  DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADG 1033

Query: 2080 SIVQFKYGEDGVDVHRTSFLKNFEALVNNQETLRQKFQYE-HEFNAYVDKLPEGLEEDAE 1904
            S++QF+YGEDGVDVH+T+F+  FEAL  NQ+ L +   ++  ++N ++++LP  L E  E
Sbjct: 1034 SVIQFQYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGE 1093

Query: 1903 IFFMKLKNRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPS 1724
              +  L            K+     + DF++L+  KYLSSLA PGEPVGV+AAQS+GEPS
Sbjct: 1094 FIYNSLSK---------DKVPGLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPS 1144

Query: 1723 TQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGK 1544
            TQMTLNTFH AGRGEMNVTLGIPRLQEILMTAS  IKTP++TCP     S D A  L  K
Sbjct: 1145 TQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANK 1204

Query: 1543 MKKITVADIVESMEVHLLPVHKDSED--RIYKLLIKFKP------HDFISLEDLEETLAH 1388
            +KKITVADI+ESM V ++P  +   +   IYKL I F P      H  IS EDLE TL  
Sbjct: 1205 LKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLET 1264

Query: 1387 AFLRELEDAIEKHVELLCKIGGIENSMSSARSNEVETDEDTSGSISHXXXXXXXXXXXXX 1208
             FL ELE  IE+ + LL KI GI+  +  ++S      ++ S S                
Sbjct: 1265 VFLEELEGLIEREMVLLSKINGIKXFVPDSQSKGSSEGDEVSSS-------RQEEMDDDD 1317

Query: 1207 XXXXXXXXXDLGSDLQKRKQQTTDEMDYEDGSEDGSVQQESPIEVEKERRKDNRSHDGSA 1028
                     DLGSD +K+K Q  DEMDYED SED    +ES    E E    ++  +   
Sbjct: 1318 EGNDLDVAEDLGSDXEKQKLQANDEMDYEDDSEDDLNAKESSTGFESE---VDQGDEAEI 1374

Query: 1027 TTED--EVLKDTDDENDEDYASKMLYENGEMREPKSSDXXXXXXXXXXKRGELPMKKNDR 854
            T  D  E++KD+  EN  +        + E     S +           + EL  K+ DR
Sbjct: 1375 TNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSKE-------KKKVKSELVRKETDR 1427

Query: 853  RVFVAVNGLSFEVHFGFTDEPHLLLGQIAQRTAKKVSMEGSGKISECRMVEYDATEKTVR 674
             +FV      FEVHF FT+EPH LL QI QR A+KVS++ SGKI +C+ +     E  V 
Sbjct: 1428 SIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQI--TCKEGQVI 1485

Query: 673  WDEKKIKKHSDVXXXXXXXXXXXRYWALKAAGTDFNAFWEMQDELDVTRIYSNNIHAVLT 494
            +    +K+  ++              AL+ +G DF   WEMQDELDV  IYSN+IHA+L 
Sbjct: 1486 YHGNNLKERKNLKPEEKEKIP-----ALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQ 1540

Query: 493  TYGVEAARRTIITEVKNVFEAYGVKVDYRHLSLIADYMTHTGGYRPMSRHGSIAESLSPL 314
            TYGVEAAR TII E++N+F +YG+ V+ RHLSL+ADYMTH+GGYRPMSR G I++S+SP 
Sbjct: 1541 TYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPF 1600

Query: 313  AKMSFETASKFIVEAASRGLADDLETPSSRICLGLPVKMGTGSFDLMQKLD 161
            ++M+FETA KFIV+AA  G  D+LETPSSRICLGLPVKMGTGSFDLMQK++
Sbjct: 1601 SRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIE 1651


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
            sinensis]
          Length = 1715

 Score = 1238 bits (3202), Expect = 0.0
 Identities = 690/1277 (54%), Positives = 853/1277 (66%), Gaps = 47/1277 (3%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSS 3671
            LRLTYPERVTPWNV KLRD+I+NG E+HPGA  Y DK+ST++LP NKKMRI+I+RKL +S
Sbjct: 477  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIARKLDTS 536

Query: 3670 RGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMH 3491
            RG + Q G +S+ EFEGKIVYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT RMH
Sbjct: 537  RGAIVQPGKDSDNEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 596

Query: 3490 YANCSSYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSA 3311
            YANCS+YNADFDGDEMNVH PQDE+S AEAYNIVNAN QY+ P+ GD +R LIQDHIVSA
Sbjct: 597  YANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSA 656

Query: 3310 VXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKPK 3131
                        DEF QLLY SGV +   GSF+    +++ I  SE  +  +LPA+WKP+
Sbjct: 657  ALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPE 716

Query: 3130 PLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYF--------QRAPKKVQPGKDEKKN 2975
            PLWTGKQVITA+LNH+TRG  PF +E+  K+P  +F        Q   KK   GK  K N
Sbjct: 717  PLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTN 776

Query: 2974 S-------------ENQPRKEEKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQ 2834
                          E +P +E++   N+    E + SE  L+I+KN+LV+GVIDKAQF  
Sbjct: 777  KMHKDKSGKKKEVVEGKPGEEKEAEKNK--SKEKELSEEKLLIYKNDLVRGVIDKAQFAD 834

Query: 2833 FGLVHTVQEXXXXXXXXXXXXXXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEIL--D 2660
            +GLVHTVQE                LFT+FLQ+HGFTCGVDDL+IL DK+ +RK  L   
Sbjct: 835  YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS 894

Query: 2659 QDVGNEVHSKFVNCV--PDIAPKELQWELEKVICRNRESASTSLDLMMRRKF-KDQQENI 2489
            +++G  VH + +      +I P +L+ E+EK +    ++A    D+ M  +  K    ++
Sbjct: 895  EEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV 954

Query: 2488 SKELLLTELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLP 2309
              ELL   LLKP  KN ISLMT SGAKG  VNFQQISS LGQQ+LEGKRVPRMVSGKTLP
Sbjct: 955  INELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLP 1014

Query: 2308 CFPPWDFTSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 2129
             F PWD+  RAGG++ DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL
Sbjct: 1015 SFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1074

Query: 2128 ESLKVCYDYSVRDADGSIVQFKYGEDGVDVHRTSFLKNFEALVNNQETLRQKFQYEHE-F 1952
            E LK+ YDYSVRDADGSIVQF YGEDGVDVH+TSF+  F+AL  NQE + +K   + +  
Sbjct: 1075 ECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAANQEMIYKKCSGQLDAS 1134

Query: 1951 NAYVDKLPEGLEEDAEIFFMKLKNRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPP 1772
            NAY+ +LP+ L+++AE F  K              +S    + DFLKLV  K++ SLA P
Sbjct: 1135 NAYIMELPDALKDNAEKFADKF-------------LSNEMAKQDFLKLVKHKFVLSLAQP 1181

Query: 1771 GEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCP 1592
            GEPVG++A+QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL  AS  IKTPV+TCP
Sbjct: 1182 GEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCP 1241

Query: 1591 FLHLKSKDDANSLLGKMKKITVADIVE--SMEVHLLPVHKDSEDRIYKLLIK-FKPHDF- 1424
             L  K++DDA  L  K+KKITVADIV+  S++V     H      +Y L ++ +KP ++ 
Sbjct: 1242 LLVGKTEDDAKRLADKLKKITVADIVKKISVKVRAFTSHDGQACSVYVLTMELYKPKNYP 1301

Query: 1423 ----ISLEDLEETLAHAFLRELEDAIEKHVELLCKIGGIENSMSS-ARSNEVETDEDTSG 1259
                I+LED EE L   F+RELED I+ H+ LL KI GI+N  S   +    ETD+D SG
Sbjct: 1302 TYTDITLEDWEEILEVVFVRELEDTIQNHLLLLSKINGIKNVASGLTQKASNETDQDGSG 1361

Query: 1258 SISHXXXXXXXXXXXXXXXXXXXXXXDLGSDLQKRKQQTTDEMDYEDGSED--------- 1106
            ++S                       DLG D  K+KQ+ TDE DYEDGSE+         
Sbjct: 1362 NVSQ-----CRGDDDDADDADGEEAEDLGMDAHKQKQRATDEKDYEDGSEEEMNDGVSAA 1416

Query: 1105 --GSVQQESPIEVEKERRKDNRSHDGSATTEDEVLKDTDDENDEDYASKMLYENGEMREP 932
              GS   ++  E++ + + +    D  AT E E  +D   EN + +  K   +  + +  
Sbjct: 1417 GFGSEIDQAESEIDDD-QAETEIEDDRATNEIETSQDQASENLKPFTPKSSKKKSKSKSK 1475

Query: 931  KSSDXXXXXXXXXXKRGELPMKKNDRRVFVAVNGLSFEVHFGFTDEPHLLLGQIAQRTAK 752
            +              R +L  K  DR ++VA  G+ FE HF F +EP++LL QIA+  AK
Sbjct: 1476 RKK-----------ARAKLVKKDTDRAIYVAARGMHFEAHFKFINEPNILLAQIARHVAK 1524

Query: 751  KVSMEGSGKISECRMVEYDATEKTVRWDEKKIKKHSDVXXXXXXXXXXXRYWALKAAGTD 572
            KV ++ SGKI +C++   +  E  V +  K  K   D+              AL   G D
Sbjct: 1525 KVYIQSSGKIDQCQVT--NCKESQVIYYGKDPKTREDIKPEEKEKVQ-----ALHTTGVD 1577

Query: 571  FNAFWEMQDELDVTRIYSNNIHAVLTTYGVEAARRTIITEVKNVFEAYGVKVDYRHLSLI 392
            F+AFW +QD +DV  IYSNNI A+L TYGVEAAR TII E+K+VF +YG+ V+ RHLSLI
Sbjct: 1578 FHAFWRLQDFIDVRYIYSNNIQAMLETYGVEAARETIIREIKHVFGSYGISVNTRHLSLI 1637

Query: 391  ADYMTHTGGYRPMSRHGSIAESLSPLAKMSFETASKFIVEAASRGLADDLETPSSRICLG 212
            AD+MTH+GGYRPMSR G IAES+SP +KM+FETASKFIVEAAS G  D L+TPS+RICLG
Sbjct: 1638 ADFMTHSGGYRPMSRLGGIAESVSPFSKMTFETASKFIVEAASYGQVDKLDTPSARICLG 1697

Query: 211  LPVKMGTGSFDLMQKLD 161
            LPVKMGTGSFDLMQKL+
Sbjct: 1698 LPVKMGTGSFDLMQKLE 1714


>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
            gi|557523327|gb|ESR34694.1| hypothetical protein
            CICLE_v10004132mg [Citrus clementina]
          Length = 1715

 Score = 1236 bits (3199), Expect = 0.0
 Identities = 696/1272 (54%), Positives = 856/1272 (67%), Gaps = 42/1272 (3%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSS 3671
            LRLTYPERVTPWNV KLRD+I+NG E+HPGA  Y DK+ST++LP NKKMRI+I RKL +S
Sbjct: 477  LRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTS 536

Query: 3670 RGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMH 3491
            RG + Q G +S+ EFEGK+VYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT RMH
Sbjct: 537  RGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 596

Query: 3490 YANCSSYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSA 3311
            YANCS+YNADFDGDEMNVH PQDE+S AEAYNIVNAN QY+ P+ GD +R LIQDHIVSA
Sbjct: 597  YANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSA 656

Query: 3310 VXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKPK 3131
                        DEF QLLY SGV +   GSF+    +++ I  SE  +  +LPA+WKP+
Sbjct: 657  ALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPE 716

Query: 3130 PLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYF--------QRAPKKVQPGKDEKKN 2975
            PLWTGKQVITA+LNH+TRG  PF +E+  K+P  +F        Q   KK   GK  K N
Sbjct: 717  PLWTGKQVITAVLNHITRGRPPFIVERGGKLPQDFFKTRFNADKQSGRKKNDKGKLSKTN 776

Query: 2974 S-------------ENQPRKEEKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQ 2834
                          E +P +E++   N+    E + SE  L+I+KN+LV+GVIDKAQF  
Sbjct: 777  KMHKDKSGKKKEVVEGKPGEEKEAEKNK--SKEKELSEEKLLIYKNDLVRGVIDKAQFAD 834

Query: 2833 FGLVHTVQEXXXXXXXXXXXXXXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEIL--D 2660
            +GLVHTVQE                LFT+FLQ+HGFTCGVDDL+IL DK+ +RK  L   
Sbjct: 835  YGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGS 894

Query: 2659 QDVGNEVHSKFVNCV--PDIAPKELQWELEKVICRNRESASTSLDLMMRRKF-KDQQENI 2489
            +++G  VH + +      +I P +L+ E+EK +    ++A    D+ M  +  K    ++
Sbjct: 895  EEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSV 954

Query: 2488 SKELLLTELLKPFPKNCISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLP 2309
              +LL   LLKP  KN ISLMT SGAKG  VNFQQISS LGQQ+LEGKRVPRMVSGKTLP
Sbjct: 955  INDLLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLP 1014

Query: 2308 CFPPWDFTSRAGGYVTDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 2129
             F PWD+  RAGG++ DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL
Sbjct: 1015 SFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1074

Query: 2128 ESLKVCYDYSVRDADGSIVQFKYGEDGVDVHRTSFLKNFEALVNNQETLRQKFQYEHE-F 1952
            E LK+ YDYSVRDADGSIVQF YGEDGVDVH+TSF+  F+AL  NQE + +K   + +  
Sbjct: 1075 ECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAANQEMIYKKCSGQLDAS 1134

Query: 1951 NAYVDKLPEGLEEDAEIFFMKLKNRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPP 1772
            NAY+ +LP+ L+++AE F  K              +S    + DFLKLV  K++ SLA P
Sbjct: 1135 NAYIMELPDALKDNAEKFADKF-------------LSNEMAKQDFLKLVKHKFVLSLAQP 1181

Query: 1771 GEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCP 1592
            GEPVG++AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL  AS  IKTPV+TCP
Sbjct: 1182 GEPVGLLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCP 1241

Query: 1591 FLHLKSKDDANSLLGKMKKITVADIVE--SMEVHLLPVHKDSEDRIYKLLIK-FKPHDF- 1424
             L  K++DDA  L  K+KKITVADIV+  S++V     H      +Y L ++ +KP ++ 
Sbjct: 1242 LLVGKTEDDAKRLADKLKKITVADIVKKISVKVRAFTSHDGQACTVYVLTMELYKPKNYP 1301

Query: 1423 ----ISLEDLEETLAHAFLRELEDAIEKHVELLCKIGGIENSMSS-ARSNEVETDEDTSG 1259
                I+LED EE L   F+RELED I+ H+ LL KI GI+N  S   +    ETD++ SG
Sbjct: 1302 TYTDITLEDWEEILEVVFVRELEDTIQNHLLLLSKINGIKNVASGLTQKASNETDQEGSG 1361

Query: 1258 SISHXXXXXXXXXXXXXXXXXXXXXXDLGSDLQKRKQQTTDEMDYEDGSE----DGSVQQ 1091
            ++S                       DLG D  K+KQ+ TDE DYEDGSE    DG    
Sbjct: 1362 NVSQ-----CRGDDDDADDADGEEAEDLGMDAHKQKQRATDEKDYEDGSEGEMNDGVSAA 1416

Query: 1090 ESPIEVEKERRKDNRSHDGSATTEDEVLKDTDD-ENDEDYASKMLYENGEMREPKSS-DX 917
                E++   + ++   D  A TE E  + T++ EN +D AS    EN +   PKSS   
Sbjct: 1417 GFGSEID---QAESEIDDDQAETEIEDDRATNEIENSQDQAS----ENLKPFTPKSSKKK 1469

Query: 916  XXXXXXXXXKRGELPMKKNDRRVFVAVNGLSFEVHFGFTDEPHLLLGQIAQRTAKKVSME 737
                      R +L  K  DR ++VA  G+ FE HF F +EP++LL QIA+  AKKV ++
Sbjct: 1470 SKSKTKRKKARAKLVKKDTDRAIYVAARGMHFEAHFKFINEPNILLAQIARHVAKKVYIQ 1529

Query: 736  GSGKISECRMVEYDATEKTVRWDEKKIKKHSDVXXXXXXXXXXXRYWALKAAGTDFNAFW 557
             SGKI +C++   +  E  V +  K  KK  D+              AL   G DF+AFW
Sbjct: 1530 SSGKIDQCQVT--NCKESQVIYYGKDPKKREDIKPEEKEKVQ-----ALHTTGVDFHAFW 1582

Query: 556  EMQDELDVTRIYSNNIHAVLTTYGVEAARRTIITEVKNVFEAYGVKVDYRHLSLIADYMT 377
            ++QD +DV  IYSNNI A+L TYGVEAAR TII E+K+VF +YG+ V+ RHLSLIAD+MT
Sbjct: 1583 QLQDFIDVRYIYSNNIQAMLETYGVEAARETIIREIKHVFGSYGISVNTRHLSLIADFMT 1642

Query: 376  HTGGYRPMSRHGSIAESLSPLAKMSFETASKFIVEAASRGLADDLETPSSRICLGLPVKM 197
            H+GGYRPMSR G IAES+SP +KM+FE ASKFIVEAAS G  D L+TPS+RICLGLPVKM
Sbjct: 1643 HSGGYRPMSRLGGIAESVSPFSKMTFEIASKFIVEAASYGQVDKLDTPSARICLGLPVKM 1702

Query: 196  GTGSFDLMQKLD 161
            GTGSFDLMQKL+
Sbjct: 1703 GTGSFDLMQKLE 1714


>gb|EMJ04262.1| hypothetical protein PRUPE_ppa000153mg [Prunus persica]
          Length = 1612

 Score = 1235 bits (3196), Expect = 0.0
 Identities = 678/1268 (53%), Positives = 842/1268 (66%), Gaps = 39/1268 (3%)
 Frame = -2

Query: 3847 RLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSSR 3668
            RLTYPERVTPWNV KLR+AIVNG E+HPGA  Y DK     L  N++ RI+ISRKLPSS+
Sbjct: 380  RLTYPERVTPWNVDKLRNAIVNGSEIHPGATQYVDKSGPKILRQNRRERISISRKLPSSK 439

Query: 3667 GVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMHY 3488
            G V Q G  S+ + E KIV+RHL+DGDIVLVNRQPTLHKPSIMAHVVRVLKGEKT RMHY
Sbjct: 440  GAVMQHGKGSDNDIESKIVHRHLRDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHY 499

Query: 3487 ANCSSYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSAV 3308
            ANCS+YNADFDGDEMNVH PQDEIS +EAYNIVNAN QY+ PT GD +R LIQDH++SAV
Sbjct: 500  ANCSTYNADFDGDEMNVHFPQDEISRSEAYNIVNANNQYVKPTSGDPIRALIQDHVISAV 559

Query: 3307 XXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKPKP 3128
                       D+FNQLLY S V A    +FS    KK+ + +SEG MQ +LPA+WKP+P
Sbjct: 560  LLTKKDTFLRWDQFNQLLYSSCVSARVSDAFSGKPDKKVFMFNSEGTMQPLLPAIWKPEP 619

Query: 3127 LWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDEKKNSENQPRK-- 2954
            LWTGKQVITALLNH+TRG  P ++E++ KIP  +F    K V+ G+D+  N   Q ++  
Sbjct: 620  LWTGKQVITALLNHITRGSPPVTVERDAKIPRGFFN--CKNVE-GEDKSGNDGQQKKRKP 676

Query: 2953 -EEKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXXX 2777
             +E+ T     K + +  EN L+I++N LV+GVIDKAQFG +GLVHTVQE          
Sbjct: 677  SKEQATDKDSSKEKEEPDENHLLIYRNNLVRGVIDKAQFGDYGLVHTVQEFYGSDTAGKL 736

Query: 2776 XXXXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILD--QDVGNEVHSKFVNCVPDIA 2603
                  LFT++LQ+HGFTCG+DDL++L  KD K K+ L+  +DVG  V+  F+  V D+ 
Sbjct: 737  LSVLSHLFTVYLQMHGFTCGIDDLLLLESKDAKMKDQLESCEDVGENVYRDFIE-VKDVK 795

Query: 2602 ---PKELQWELEKVICRNRESASTSLDLMMRRKFKDQQEN--ISKELLLTELLKPFPKNC 2438
               P ELQ  +E  I  N ESA  SLD  M  +  ++  N  + K+LLL  L KP  KNC
Sbjct: 796  RKDPVELQLNIENFIRSNGESALASLDRRMISQLNNKTSNSDVFKQLLLRGLSKPSVKNC 855

Query: 2437 ISLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTD 2258
            I LMT SGAKG   N QQI+S+LGQQ+LEGKRVP+M+SGKTLPCFPPWD++SRAGG++ D
Sbjct: 856  IYLMTTSGAKGSVANLQQITSYLGQQELEGKRVPQMISGKTLPCFPPWDWSSRAGGFIID 915

Query: 2257 RFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADGS 2078
            RFL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRC+IKNLE LKV YD +VRDADGS
Sbjct: 916  RFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCIIKNLECLKVSYDNTVRDADGS 975

Query: 2077 IVQFKYGEDGVDVHRTSFLKNFEALVNNQETLRQKFQYE-HEFNAYVDKLPEGLEEDAEI 1901
            I+QF+YGEDG+DVH TSF++ FE+L+ N+E   +K + +  + N Y+  LP  L+E AE 
Sbjct: 976  IIQFRYGEDGIDVHMTSFIQKFESLIANKEMFHKKGRRQMDKLNPYIKDLPLALKEKAEK 1035

Query: 1900 FFMKLKNRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPST 1721
            F   L  +E +             + DFLKL+  KYL SLA PGEPVGV+A QSVGEPST
Sbjct: 1036 FVHNLALKEKDHNF----------QEDFLKLMEHKYLCSLAQPGEPVGVLAGQSVGEPST 1085

Query: 1720 QMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGKM 1541
            QMTLNTFHLAGRGEMNVTLGIPRLQEILMTA++ IKTPV+TCP    +SK++A  L  K+
Sbjct: 1086 QMTLNTFHLAGRGEMNVTLGIPRLQEILMTAANDIKTPVMTCPLQKGRSKEEAQELADKL 1145

Query: 1540 KKITVADIVESMEVHLLP--VHKDSEDRIYKLLIKFKPHDFI------SLEDLEETLAHA 1385
            KKITVADI+ESM+V  +P  +      RIYKL +     + +      S ED EE L   
Sbjct: 1146 KKITVADIIESMKVTFVPFFIQDGQTCRIYKLEMTLHVPEHLRTIIEYSSEDWEEILEIV 1205

Query: 1384 FLRELEDAIEKHVELLCKIGGIEN---------------SMSSARSNEVETDEDTSGSIS 1250
            F+RELEDAI+ H+ LL KI GI+N               ++   RS   E D+D  G+  
Sbjct: 1206 FVRELEDAIQNHILLLSKISGIKNFTPDSQPKASNETDENLPEKRSQREEEDDDNGGA-- 1263

Query: 1249 HXXXXXXXXXXXXXXXXXXXXXXDLGSDLQKRKQQTTDEMDYEDGSEDGSVQQESPIEVE 1070
                                   D G D  KRK Q TDEMDYEDG +D    +E+ +   
Sbjct: 1264 -------------DDGEHGEGVEDFGLDAHKRKLQATDEMDYEDGCDD--EVREADLSDG 1308

Query: 1069 KERRKDNRSHDGSATTEDEVLKDTDDENDEDYASKMLYENGEMREPKSSD----XXXXXX 902
             E   D   ++     + E+     D NDE   S  L E G++ +PKS +          
Sbjct: 1309 DESEIDEEENEVEIGKDGEI--GVIDANDEMPGSP-LEEAGDLAKPKSKEKKTKSGSQIR 1365

Query: 901  XXXXKRGELPMKKNDRRVFVAVNGLSFEVHFGFTD-EPHLLLGQIAQRTAKKVSMEGSGK 725
                 R E+  K+ DR +FV+  G  FEVHF F D EPH+LL QIAQ+TA+KV ++ SGK
Sbjct: 1366 KKRKVRAEMVKKETDRAIFVSAKGFHFEVHFRFADNEPHILLSQIAQKTAQKVYIQRSGK 1425

Query: 724  ISECRMVEYDATEKTVRWDEKKIKKHSDVXXXXXXXXXXXRYWALKAAGTDFNAFWEMQD 545
            +++C+ +  D  +      + + K+                  AL+  G DF  FW++QD
Sbjct: 1426 VADCKQITCDENQVLCFGKDPENKQSFSSKEKKEMP-------ALQTTGIDFGTFWQLQD 1478

Query: 544  ELDVTRIYSNNIHAVLTTYGVEAARRTIITEVKNVFEAYGVKVDYRHLSLIADYMTHTGG 365
             LDV  IYSNNIHA+L TYGVEAAR TII E+ NVF++YG+ V+ RHL+LIAD+MTH GG
Sbjct: 1479 VLDVRYIYSNNIHAMLNTYGVEAARETIIREINNVFKSYGISVNIRHLTLIADFMTHAGG 1538

Query: 364  YRPMSRHGSIAESLSPLAKMSFETASKFIVEAASRGLADDLETPSSRICLGLPVKMGTGS 185
            YRP++R G I ES+SP  KM+FETASKFIVEAA  G  D LETPS+RICLGLPV +GTG 
Sbjct: 1539 YRPLNRFGGIVESISPFNKMTFETASKFIVEAAYHGQVDRLETPSARICLGLPVNVGTGC 1598

Query: 184  FDLMQKLD 161
            FDLM K++
Sbjct: 1599 FDLMHKME 1606


>gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score = 1228 bits (3178), Expect = 0.0
 Identities = 686/1252 (54%), Positives = 846/1252 (67%), Gaps = 22/1252 (1%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSS 3671
            LRLTYPERVTPWNV KLR+AI+NG E HPGA  Y DK+ST +LP ++K RI+ISRKLPSS
Sbjct: 476  LRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSS 535

Query: 3670 RGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMH 3491
            RG + Q G N +YEFEGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT RMH
Sbjct: 536  RGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMH 595

Query: 3490 YANCSSYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSA 3311
            YANCS+YNADFDGDE+NVH PQDEIS AEAYNIVNAN QY+ P+ G+ +R LIQDHIVSA
Sbjct: 596  YANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSA 655

Query: 3310 VXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKPK 3131
            V           DEFNQLLY SGV ++A  SFS    +K+ +  SE  M  ++PA+ KPK
Sbjct: 656  VLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPK 715

Query: 3130 PLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDEKKNSENQPRKE 2951
            PLWTGKQVI+++L+H+TRG  PF++ K  KIP  +F+    K      +    ENQP+ +
Sbjct: 716  PLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNK----NKQSSREENQPKND 771

Query: 2950 EKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXXXXX 2771
             +        S+ +  E  ++I++N+LV+GVIDKAQF  +GLVHTVQE            
Sbjct: 772  GQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLS 831

Query: 2770 XXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILD--QDVGNEVHSKF--VNCVPDIA 2603
                LFT+FLQ+HGFTCGVDDL+I+ DKD++RK+ L+  +    E H +   V    + A
Sbjct: 832  VFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVNSETA 891

Query: 2602 PKELQWELEKVICRNRESASTSLDLMMRRKFKDQQENISK----ELLLTELLKPFPKNCI 2435
            P ELQ E+E+ I R+ E+A T+LD   R+      EN SK    ELL   L+K   +NCI
Sbjct: 892  PTELQLEIERTIRRDGETALTALD---RKMISVLNENSSKGVLTELLSEGLVKSMGENCI 948

Query: 2434 SLMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDR 2255
            SLMT SGAKG  VNFQQISSFLGQQ+LEGKRVPRMVSGKTLPCF PWD+ +RAGG+++DR
Sbjct: 949  SLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDR 1008

Query: 2254 FLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADGSI 2075
            FLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD++VRDADGSI
Sbjct: 1009 FLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSI 1068

Query: 2074 VQFKYGEDGVDVHRTSFLKNFEALVNNQETLRQKFQYEHEFNAYVDK-LPEGLEEDAEIF 1898
            VQF YGEDG+DVH+TSF+  FEAL  NQ+ + +K   +       DK LP+GL   AE F
Sbjct: 1069 VQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQF 1128

Query: 1897 FMKLKNRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPSTQ 1718
                  RE  +  +  KI  +    DFL L+  K+LSSLA PGEPVGV+AAQSVGEPSTQ
Sbjct: 1129 I-----REEIKKYQHQKIKPK----DFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQ 1179

Query: 1717 MTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGKMK 1538
            MTLNTFHLAGRGEMNVTLGIPRLQEILMTAS  I+TPV+TCP    K+K+DA  L  KMK
Sbjct: 1180 MTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMK 1239

Query: 1537 KITVADIVESMEVHLLPVHKDSED--RIYKLLI------KFKPHDFISLEDLEETLAHAF 1382
            KITVADI+ESMEV + P   D+ D   IYKL +      K+  +  I+++D E  L   F
Sbjct: 1240 KITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVF 1299

Query: 1381 LRELEDAIEKHVELLCKIGGIENSM-SSARSNEVETDEDTSGSISHXXXXXXXXXXXXXX 1205
            LRELEDAI+ H+ LL KI GI+  M  S R+   E DED S                   
Sbjct: 1300 LRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDEDVSEG----------------- 1342

Query: 1204 XXXXXXXXDLGSDLQKRKQQTTDEMDYEDGSEDGSVQQESPIEVEKERRKDNRSHDGSAT 1025
                           + ++   D+ D +D ++D    ++    +     + + S D + T
Sbjct: 1343 ---------------RSRETKNDDDDDDDDADDEERAEDLGASLAALESEIDMSEDETGT 1387

Query: 1024 TEDEVLKDTDDENDEDYASKMLYENGEMREPKS-SDXXXXXXXXXXKRGELPMKKNDRRV 848
             +  ++  +D+  DE   S    EN     PKS  +           + +   K++DR +
Sbjct: 1388 IQINMI-GSDNGKDEISQSSPNLEN--RSNPKSREEKTGSEPKRKKMKAKFVRKESDRAI 1444

Query: 847  FVAVNGLSFEVHFGFTDEPHLLLGQIAQRTAKKVSMEGSGKISECRMVEYDATEKTVRW- 671
            F A+ GL FEVHF   +EPH+LL QIA++TAKKV ++  GKI +CR+   D +E  V + 
Sbjct: 1445 FNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVT--DCSENQVFYY 1502

Query: 670  --DEKKIKKHSDVXXXXXXXXXXXRYWALKAAGTDFNAFWEMQDELDVTRIYSNNIHAVL 497
              D KK K  SD            +  AL   G DF AFW+M+D +DV  +YSN+IHA+L
Sbjct: 1503 GEDPKKRKSPSD----------KEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAML 1552

Query: 496  TTYGVEAARRTIITEVKNVFEAYGVKVDYRHLSLIADYMTHTGGYRPMSRHGSIAESLSP 317
             TYGVEAAR TII E+ +VF +YG+ V+ RHL+LIAD+MTH+G YRPMSR G IAES+SP
Sbjct: 1553 NTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISP 1612

Query: 316  LAKMSFETASKFIVEAASRGLADDLETPSSRICLGLPVKMGTGSFDLMQKLD 161
             +KMSFETASKFIVEAA  GL D+LETPSSRICLGLPVKMGTGSFDLMQK++
Sbjct: 1613 FSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVE 1664


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score = 1217 bits (3148), Expect = 0.0
 Identities = 677/1252 (54%), Positives = 833/1252 (66%), Gaps = 22/1252 (1%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSS 3671
            LRL+YPERVTPWNV KLR+AI+NGPE HPGA  YADKVS VKLP   K+    SRKLP+S
Sbjct: 458  LRLSYPERVTPWNVVKLRNAILNGPESHPGATHYADKVSIVKLPPKGKLLSLTSRKLPTS 517

Query: 3670 RGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMH 3491
            RGV+   G  S++EFEGK+VYRHL+DGD+VLVNRQPTLHKPSIMAH+VRVLKGEKT RMH
Sbjct: 518  RGVILHQGKISDHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIVRVLKGEKTVRMH 577

Query: 3490 YANCSSYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSA 3311
            YANCS+YNADFDGDE+NVH PQDEIS AEAYNIVNAN QY+ PT GD +R LIQDHIVSA
Sbjct: 578  YANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSA 637

Query: 3310 VXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKPK 3131
                        +EFNQLLY SGV     GSF     +K+ I +SE  M    PA+WKP+
Sbjct: 638  ALLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFISNSESEMFLFPPAIWKPE 697

Query: 3130 PLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDEKKNSENQPRKE 2951
            PLWTGKQVI+ALL ++TRG  PF+ EK  KIP  +F+   +K       K+ +E+  +K+
Sbjct: 698  PLWTGKQVISALLYYITRGSPPFTAEKNAKIPSNFFKTQIRK------GKRYTEDTSKKK 751

Query: 2950 EKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXXXXX 2771
            +            K  E+ L+I+KN+LV+GV+DKAQFG +G++HTVQE            
Sbjct: 752  D------------KPDEDKLLIYKNDLVRGVVDKAQFGDYGMIHTVQELYGSNVAGNLLS 799

Query: 2770 XXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILD--QDVGNEVHSKFVNC--VPDIA 2603
                LFT FLQ+HGFTCGVDDL++   KD++R   L   + +G+ VH +F+      +I 
Sbjct: 800  ALSRLFTTFLQMHGFTCGVDDLMLTEGKDVERMNQLKSCEIIGDSVHREFIGVKNSDNID 859

Query: 2602 PKELQWELEKVICRNRESASTSLDLMMRRKFKDQ-QENISKELLLTELLKPFPKNCISLM 2426
            P  LQ  +EK I  N E+A T LD  M      +    I K+LL   +LKP  KNCISLM
Sbjct: 860  PVTLQLNIEKKIRSNGEAALT-LDRKMTSNLNSRTSSGILKKLLSEGILKPSGKNCISLM 918

Query: 2425 TVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLS 2246
            T SGAKG  VNFQQISS LGQQ+LEGKRVPRMVSGKTLPCFPPWD + RAGG++ DRFL+
Sbjct: 919  TTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDRFLT 978

Query: 2245 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADGSIVQF 2066
             L PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD++VRDADGSI+QF
Sbjct: 979  ALHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQF 1038

Query: 2065 KYGEDGVDVHRTSFLKNFEALVNNQETLRQKFQYEHEFNA-YVDKLPEGLEEDAEIFFMK 1889
             YGEDGVDVH+TSF+  F AL  N+E +   +  + + ++ Y++KLPE LE  AE  F K
Sbjct: 1039 HYGEDGVDVHQTSFITEFGALSTNKELVFSNYCRQLDRSSPYINKLPEALEGKAE-KFSK 1097

Query: 1888 LKNRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPSTQMTL 1709
             +N  S E            + DFL+L+  KY+S LA PGEPVGV+A+QSVGEP+TQMTL
Sbjct: 1098 QRNLGSME------------QADFLRLMEHKYVSCLAQPGEPVGVLASQSVGEPATQMTL 1145

Query: 1708 NTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGKMKKIT 1529
            NTFHLAGRGEMNVTLGIPRLQEILM A+  IKTP +TCP  H KS  DA  L  K+KKIT
Sbjct: 1146 NTFHLAGRGEMNVTLGIPRLQEILMAAARDIKTPFMTCPLRHDKSMKDAICLADKLKKIT 1205

Query: 1528 VADIVESMEVHLLPVH--KDSEDRIYKLLIK------FKPHDFISLEDLEETLAHAFLRE 1373
            VADI++SM+V ++PV         IYKL++K      +  +  I+L+D EETL   F+RE
Sbjct: 1206 VADIIKSMKVSVVPVTVLGGQVCSIYKLVMKLYKSKQYPEYTDITLDDWEETLRVNFVRE 1265

Query: 1372 LEDAIEKHVELLCKIGGIENSMSSARSNEVETDED--TSGSISH-XXXXXXXXXXXXXXX 1202
            LEDAI+ H+ LL KI GI+   +  +SN   + ED  ++GS S                 
Sbjct: 1266 LEDAIQNHMTLLSKISGIKKFKTDPQSNYSNSSEDAHSNGSESEKKGQNNDDDDEDGGGV 1325

Query: 1201 XXXXXXXDLGSDLQKRKQQTTDEMDYEDGSEDGSVQQESPIEVEKERRKDNRSHDGSATT 1022
                   DLGSD QKRK Q TDE+DYEDG E+ +   E   E+E +        DGS   
Sbjct: 1326 EDTEGYEDLGSDAQKRKLQGTDEVDYEDGPEEETHDGELSEEIEGD-------EDGSDVD 1378

Query: 1021 EDEVLKDTDDENDED-----YASKMLYENGEMREPKSSDXXXXXXXXXXKRGELPMKKND 857
             +E   +  D N+ +       SK + E   ++  K              + E   KK D
Sbjct: 1379 ANENYNNVTDANNSEGLEKPSKSKTIDEKQNLKREKK-------------KSEPTTKKYD 1425

Query: 856  RRVFVAVNGLSFEVHFGFTDEPHLLLGQIAQRTAKKVSMEGSGKISECRMVEYDATEKTV 677
            R +FV   G  FE+HF FT EPH+LL QIAQRTAKKV ++  GK+ EC+ +     E  V
Sbjct: 1426 RAIFVEAKGKHFEIHFRFTGEPHILLTQIAQRTAKKVCIQNFGKVGECKAI--TCKESGV 1483

Query: 676  RWDEKKIKKHSDVXXXXXXXXXXXRYWALKAAGTDFNAFWEMQDELDVTRIYSNNIHAVL 497
             +  K  +K  ++              AL+ +G  F  FWE++D+LDV  IYSNN+HA+L
Sbjct: 1484 IYYGKDGRKRIEISASEKEQIP-----ALQTSGVHFKTFWELEDDLDVRYIYSNNVHAML 1538

Query: 496  TTYGVEAARRTIITEVKNVFEAYGVKVDYRHLSLIADYMTHTGGYRPMSRHGSIAESLSP 317
              YGVEAAR TII EV+NVF++YG+ V+ RHL+LIAD+MTHTG YRPM+R GSIA+S SP
Sbjct: 1539 NAYGVEAARETIIREVQNVFKSYGISVNIRHLTLIADFMTHTGSYRPMNRTGSIADSTSP 1598

Query: 316  LAKMSFETASKFIVEAASRGLADDLETPSSRICLGLPVKMGTGSFDLMQKLD 161
              KM FETA  FIVEAA  G  D+LETPS+RICLGLPVKMGTG  DL+QKL+
Sbjct: 1599 FIKMCFETAGNFIVEAAYHGQVDNLETPSARICLGLPVKMGTGCHDLIQKLE 1650


>gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score = 1214 bits (3142), Expect = 0.0
 Identities = 674/1251 (53%), Positives = 837/1251 (66%), Gaps = 21/1251 (1%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSS 3671
            LRL+YPERVTPWNV  LR+AI+NGP+ HPGA  Y D+ +TVKLP N K+   ISRKLPSS
Sbjct: 446  LRLSYPERVTPWNVTMLRNAILNGPQSHPGATHYTDQQATVKLPPNGKLLSFISRKLPSS 505

Query: 3670 RGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMH 3491
            RGV+   G  S+ EFEGKIVYRHL+DGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT RMH
Sbjct: 506  RGVILDHGKISDQEFEGKIVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMH 565

Query: 3490 YANCSSYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSA 3311
            YANCS+YNADFDGDE+NVH PQDEIS AEAYNIVNAN QY+ PT GD +R LIQDHIVSA
Sbjct: 566  YANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSA 625

Query: 3310 VXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKPK 3131
                        + F QLLY SGV     GSFS    +K+ + +SE  M    PA+WKP+
Sbjct: 626  ALLTKKDTFITYEVFIQLLYSSGVSMTGLGSFSGKHGQKVFMTNSEFEMFLFPPAIWKPE 685

Query: 3130 PLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDEKKNSENQPRKE 2951
            PLWTGKQVI+ALL ++TR   PF++EK  KIP  +F+   +  +    +K  ++ +P  E
Sbjct: 686  PLWTGKQVISALLYYITRDSPPFTVEKNAKIPSNFFKTQVRDGKRHTRDKSRNKVEPDDE 745

Query: 2950 EKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXXXXX 2771
            +K                 L+I+KN+LV+GV+DKAQFG +G++HTVQE            
Sbjct: 746  DK-----------------LLIYKNDLVRGVVDKAQFGDYGIIHTVQELYGSKVAGNLLS 788

Query: 2770 XXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILD--QDVGNEVHSKFVNCVPD--IA 2603
                LFT FLQ+HGFTCGVDDL+I  +KD++R + L   +++G+ VH +F+  +    I 
Sbjct: 789  ALSRLFTTFLQMHGFTCGVDDLMITEEKDVERMDQLRSCEEIGDIVHREFIGVMNSDIID 848

Query: 2602 PKELQWELEKVICRNRESASTSLDLMMRRKFKDQ-QENISKELLLTELLKPFPKNCISLM 2426
            P  LQ  +EK I  N E+A T LD  M      +    I K+LL   +LKP  KNCISLM
Sbjct: 849  PITLQLNIEKKIRSNGEAALTYLDRKMTSNLNSRTSSGILKDLLSDGILKPSGKNCISLM 908

Query: 2425 TVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLS 2246
            T SGAKG  VNFQQISS LGQQ+LEGKRVPRMVSGKTLPCF PWD + RAGG++ DRFL+
Sbjct: 909  TTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFAPWDCSPRAGGFIIDRFLT 968

Query: 2245 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADGSIVQF 2066
            GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD++VRDADGSI+QF
Sbjct: 969  GLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQF 1028

Query: 2065 KYGEDGVDVHRTSFLKNFEALVNNQETLRQKFQYEHEFNA-YVDKLPEGLEEDAEIFFM- 1892
             YGEDGVDVH TSF+  FEAL  N+E +      + + ++ Y++KLP+ L+E AE FF  
Sbjct: 1029 HYGEDGVDVHHTSFINKFEALSTNKELVYGNCCRQLDRSSPYINKLPDALKEKAENFFRD 1088

Query: 1891 KLKNRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPSTQMT 1712
             LK R    L           R +FLKL+  KY+S LA PGE VGV+A+QSVGEP+TQMT
Sbjct: 1089 SLKQRNLGSL----------KRAEFLKLMEHKYVSCLAQPGESVGVLASQSVGEPATQMT 1138

Query: 1711 LNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGKMKKI 1532
            LNTFHLAGRGEMNVTLGIPRLQEI+M A+  IKTP +TCP    KS ++A  L  K+KKI
Sbjct: 1139 LNTFHLAGRGEMNVTLGIPRLQEIVMAAARDIKTPFMTCPLRSNKSMEEAICLADKLKKI 1198

Query: 1531 TVADIVESMEVHLLPVH--KDSEDRIYKLLIK-FKPHDF-----ISLEDLEETLAHAFLR 1376
            TVADI++SM+V ++PV         IYKL++K +KP  +     I+LED E+TL  +F+R
Sbjct: 1199 TVADIIKSMKVSVVPVSVLGGQVCSIYKLVMKLYKPKQYPKYSDITLEDWEDTLRISFVR 1258

Query: 1375 ELEDAIEKHVELLCKIGGIENSMSSARSNEVET-DEDTSGSISHXXXXXXXXXXXXXXXX 1199
            ELEDAIE H+ LL KI GI+   +  +S+   + D   +GS S                 
Sbjct: 1259 ELEDAIENHMALLSKISGIKKFKTDPQSHSNSSEDAHGNGSESETKGKSNDDDDDDDVVE 1318

Query: 1198 XXXXXXDLGSDLQKRKQQTTDEMDYEDGSE----DGSVQQESPIEVEKERRKDNRSHDGS 1031
                  DLGSD QKRK+Q TDE+DYEDG E    DG + +E  IE +++   DN + D S
Sbjct: 1319 DTEGYEDLGSDAQKRKRQGTDEVDYEDGPEEETHDGVLSEE--IENDEDNVDDNMTLDAS 1376

Query: 1030 ATTEDEVLKDTDDEN-DEDYASKMLYENGEMREPKSSDXXXXXXXXXXKRGELPMKKNDR 854
                       D E  DE   SK ++E   ++  K              +     +K DR
Sbjct: 1377 -----------DSEGLDELSESKSIFEKDSLKREKK-------------KSRPTTRKYDR 1412

Query: 853  RVFVAVNGLSFEVHFGFTDEPHLLLGQIAQRTAKKVSMEGSGKISECRMVEYDATEKTVR 674
             VFV   G+ F++HF FT EP +LL +IA R+AKKV ++ SG++ EC+ V     E  V 
Sbjct: 1413 AVFVKAKGMHFQIHFKFTGEPDILLAEIALRSAKKVCIQNSGRVGECKAV--TCKESGVM 1470

Query: 673  WDEKKIKKHSDVXXXXXXXXXXXRYWALKAAGTDFNAFWEMQDELDVTRIYSNNIHAVLT 494
            +  +  +K  D+              AL+ +G  F  FWE+QD+LDV  IYSNN+HA+L 
Sbjct: 1471 YYGEDSRKRDDIPASVKEKIP-----ALQTSGVHFKTFWELQDDLDVRYIYSNNVHAMLN 1525

Query: 493  TYGVEAARRTIITEVKNVFEAYGVKVDYRHLSLIADYMTHTGGYRPMSRHGSIAESLSPL 314
             YGVEAAR TII EV+NVF++YG+ V+ RHL+LIAD+MTH+GGYRPM+R+GSIA+  SP 
Sbjct: 1526 AYGVEAARETIIREVQNVFKSYGISVNIRHLTLIADFMTHSGGYRPMNRNGSIADCTSPF 1585

Query: 313  AKMSFETASKFIVEAASRGLADDLETPSSRICLGLPVKMGTGSFDLMQKLD 161
             KM FETASKFIVEAA  G  D+LETPSSRICLGLPVKMGTG  DL+QKL+
Sbjct: 1586 IKMCFETASKFIVEAAYHGQVDNLETPSSRICLGLPVKMGTGCHDLIQKLE 1636


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1628

 Score = 1186 bits (3068), Expect = 0.0
 Identities = 655/1246 (52%), Positives = 826/1246 (66%), Gaps = 16/1246 (1%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSS 3671
            LRLTYPERVTPWN  KL DAI+NGP+ HPGAI Y DK ST++L  +K +R + SR+L SS
Sbjct: 441  LRLTYPERVTPWNSAKLMDAILNGPDTHPGAILYTDKTSTLRLQKDKSLRSSTSRRLQSS 500

Query: 3670 RGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMH 3491
            RGV+   G   E+EFEGK+VYRHL+DGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT RMH
Sbjct: 501  RGVIMHHGKIHEHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMH 560

Query: 3490 YANCSSYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSA 3311
            YANCS+YNADFDGDE+NVH PQDEIS AEAYNIVNAN QY+ PT GD +R LIQDHIVSA
Sbjct: 561  YANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSA 620

Query: 3310 VXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKPK 3131
                         EFNQLLY SGV     GSFS    +K+ + +SE  M    PA++KP+
Sbjct: 621  ALLTKKDTFLSCQEFNQLLYSSGVSMTGMGSFSCKPGQKVLMSNSESEMFLFPPAIFKPE 680

Query: 3130 PLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDEKKNSENQPRKE 2951
            PLWTGKQVI+ALL ++T+G  PF++EK  KIP  +F     K Q G+ +K   +   +K+
Sbjct: 681  PLWTGKQVISALLCYITKGRPPFTVEKNAKIPSSFF-----KTQTGEIKKHTKDTSRKKD 735

Query: 2950 EKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXXXXX 2771
            E               E+ L+I++N+LV+GV+DKAQFG +G+VHTVQE            
Sbjct: 736  E--------------LEDKLLIYRNDLVRGVVDKAQFGDYGMVHTVQEFYGSNTAGILLS 781

Query: 2770 XXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILD--QDVGNEVHSKFVNCV--PDIA 2603
                LFT FLQ+HGFTCGVDDL+I   KD +R   L+  +++G+ VH +F+  +   +I 
Sbjct: 782  ALSRLFTNFLQMHGFTCGVDDLLIKVGKDSERLNQLESCEEIGDIVHREFIGVMESENID 841

Query: 2602 PKELQWELEKVICRNRESASTSLDLMMRRKFKDQ-QENISKELLLTELLKPFPKNCISLM 2426
            P  +Q  +EK I  N E+A T LD  M      +    + KELL    LKP  KN ISLM
Sbjct: 842  PITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSKGSLKPSGKNWISLM 901

Query: 2425 TVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLS 2246
            T SGAKG  VNFQQISS LGQQ+LEGKRVPRMVSGKTLPCFP WD + RAGG++ DRFL+
Sbjct: 902  TTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPSWDCSPRAGGFIIDRFLT 961

Query: 2245 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADGSIVQF 2066
             LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKVCYD++VRD+DGSI+QF
Sbjct: 962  ALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVCYDHTVRDSDGSIIQF 1021

Query: 2065 KYGEDGVDVHRTSFLKNFEALVNNQETLRQKFQYEHEFNA-YVDKLPEGLEEDAEIFFMK 1889
             YGEDGVDVH+TSF+  FEAL  N+E +      + + ++ Y++KLP+ L+  AE F   
Sbjct: 1022 HYGEDGVDVHQTSFINKFEALSINKELIYSNCCRQLDRSSPYINKLPDALKGKAENFIRD 1081

Query: 1888 LKNRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPSTQMTL 1709
              +++        + S      DFL+++  KY+SSLA PGEPVGV+A+QSVGEP+TQMTL
Sbjct: 1082 FSSKQ--------RNSSSMKEADFLQVMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTL 1133

Query: 1708 NTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGKMKKIT 1529
            NTFHLAGRGEMNVTLGIPRL EI++ AS  IKTP +TCP    KS +DA  L  KMKKIT
Sbjct: 1134 NTFHLAGRGEMNVTLGIPRLHEIVVAASKNIKTPFMTCPLRPNKSMEDAIRLADKMKKIT 1193

Query: 1528 VADIVESMEVHLLPVHKDSEDR---IYKLLIKF-KPHDF-----ISLEDLEETLAHAFLR 1376
            VADI+ESM+V ++PV    E R   IYKL +K  KP  +     ++LED EETL   F+R
Sbjct: 1194 VADIIESMKVSVVPV-AVKEGRICSIYKLTMKLHKPKHYPKYTDVTLEDWEETLRVGFVR 1252

Query: 1375 ELEDAIEKHVELLCKIGGIENSMSSARSNEVETDEDTSGSISHXXXXXXXXXXXXXXXXX 1196
            ELEDAIE H+ LL +I GI++    + S+    ++ ++ S S+                 
Sbjct: 1253 ELEDAIENHISLLARISGIKDFQGKSNSSNGLDNDHSNESASNQNGQTDDDDEVGDTEDA 1312

Query: 1195 XXXXXDLGSDLQKRKQQTTDEMDYEDGSEDGSVQQESPIEVE-KERRKDNRSHDGSATTE 1019
                   G D QK KQ+ TDE+DY+DG E+ +   E   +VE  E  KD+   +G     
Sbjct: 1313 EED----GFDAQKSKQRATDEVDYDDGPEEETHDGEKSEDVEVSEDGKDDEDDNGVEVNG 1368

Query: 1018 DEVLKDTDDENDEDYASKMLYENGEMREPKSSDXXXXXXXXXXKRGELPMKKNDRRVFVA 839
            D    D+D E ++   +  L E  + ++ K                E   KK DRRV+V 
Sbjct: 1369 D----DSDIEVNDSDKNVTLEETSKSKKRKF---------------EPASKKYDRRVYVK 1409

Query: 838  VNGLSFEVHFGFTDEPHLLLGQIAQRTAKKVSMEGSGKISECRMVEYDATEKTVRWDEKK 659
              G+ FE+HF F  EPH+LL QIAQRTA+KV ++  GK+ +C+ +     E  V +  + 
Sbjct: 1410 AGGMRFEIHFKFIGEPHILLAQIAQRTAEKVCIQNFGKVGQCKAI--TCKESGVIYYGED 1467

Query: 658  IKKHSDVXXXXXXXXXXXRYWALKAAGTDFNAFWEMQDELDVTRIYSNNIHAVLTTYGVE 479
              K  D+              AL+ +G  F  FWEM+D+L V  +YSN++HA+L  YGVE
Sbjct: 1468 DSKRDDIPSSVKEKIP-----ALQTSGIHFKTFWEMEDDLKVRYVYSNDVHAILKAYGVE 1522

Query: 478  AARRTIITEVKNVFEAYGVKVDYRHLSLIADYMTHTGGYRPMSRHGSIAESLSPLAKMSF 299
            AA+  II EV+NVF++YG+ V+ RHL LIAD+MTH+G YRP++R G IA+S SP  K+S+
Sbjct: 1523 AAKEVIIREVQNVFKSYGISVNIRHLMLIADFMTHSGSYRPLTRSG-IADSTSPFVKISY 1581

Query: 298  ETASKFIVEAASRGLADDLETPSSRICLGLPVKMGTGSFDLMQKLD 161
            ETAS FIVEAA  G  D LETPSSRICLGLPVKMGTG  DL+QKL+
Sbjct: 1582 ETASNFIVEAARHGQVDTLETPSSRICLGLPVKMGTGCIDLIQKLE 1627


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score = 1184 bits (3064), Expect = 0.0
 Identities = 657/1258 (52%), Positives = 830/1258 (65%), Gaps = 28/1258 (2%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSS 3671
            LRLTYPERVTPWNV +LR+AI+NGPE HPGA  YADK ST+KLP +++ R   SR+L SS
Sbjct: 453  LRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTSTLKLPLDRRSRSLTSRRLQSS 512

Query: 3670 RGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMH 3491
            RGV+  +G   + EFEGK+VYRHL+DGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT RMH
Sbjct: 513  RGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMH 572

Query: 3490 YANCSSYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSA 3311
            YANCS+YNADFDGDE+NVH PQDEIS AEAYNIVNAN QY+ PT GD +R LIQDHIVSA
Sbjct: 573  YANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSA 632

Query: 3310 VXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKPK 3131
                        +EFNQLLY SGV     G F     +KI + +S+  M    PA++KP+
Sbjct: 633  ALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSEMFLFPPAIFKPE 692

Query: 3130 PLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDEKKNSENQPRKE 2951
            PLWTGKQVI+ALL ++T+G  PF++EK  KIP  +F                 + + R+ 
Sbjct: 693  PLWTGKQVISALLYYITKGSPPFTVEKNAKIPSSFF-----------------KTRMREG 735

Query: 2950 EKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXXXXX 2771
            +K T +  IK + +  E+ L+I+KN+LV+GV+DKAQFG +G+VHTVQE            
Sbjct: 736  KKRTKDTSIKKD-EPDEDKLLIYKNDLVRGVVDKAQFGDYGIVHTVQEFYGSNTAGFLLS 794

Query: 2770 XXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILD--QDVGNEVHSKFVNCV--PDIA 2603
                LFT FLQ+HGFTCGVDDL++   KD +R   L+  +++G+ VH +F+  +   +I 
Sbjct: 795  ALSRLFTNFLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIVHREFIGVMEGDNID 854

Query: 2602 PKELQWELEKVICRNRESASTSLDLMMRRKFKDQ-QENISKELLLTELLKPFPKNCISLM 2426
            P  +Q  +EK I  N E+A T LD  M      +    + KELL   +LKP  KN ISLM
Sbjct: 855  PITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSEGILKPSGKNWISLM 914

Query: 2425 TVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRFLS 2246
            T SGAKG  VNFQQISS LGQQ+LEGKRVPRMVSGKTLPCF  WD + RAGG++ DRFL+
Sbjct: 915  TTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRFLT 974

Query: 2245 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADGSIVQF 2066
             LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD++VRDADGSI+QF
Sbjct: 975  ALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQF 1034

Query: 2065 KYGEDGVDVHRTSFLKNFEALVNNQETLRQKFQYE-HEFNAYVDKLPEGLEEDAEIFFMK 1889
             YGEDGVDVH+TSF+  FEAL  N+E +      E  E + Y++KLP+ L+  AE F   
Sbjct: 1035 HYGEDGVDVHQTSFINKFEALSTNKELVYSNCCRELDESSPYINKLPDALKGKAEKFIRD 1094

Query: 1888 LKNRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPSTQMTL 1709
              +++        + S     T+FL+L+  KY+SSLA PGEPVGV+A+QSVGEP+TQMTL
Sbjct: 1095 SSSKQ--------RNSGSMTHTNFLQLMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTL 1146

Query: 1708 NTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGKMKKIT 1529
            NTFHLAGRGEMNVTLGIPRLQEIL  AS  IKTP +TCP    KS +DA  L  KMKKIT
Sbjct: 1147 NTFHLAGRGEMNVTLGIPRLQEILTAASAHIKTPFMTCPLRPNKSMEDAIRLADKMKKIT 1206

Query: 1528 VADIVESMEVHLLPVHKDSED--RIYKLLIKF-KPHDF-----ISLEDLEETLAHAFLRE 1373
            VADI+ESM+V ++PV         IYKL++K  KP  +     ++L+D EETL  +F+R 
Sbjct: 1207 VADIIESMKVSVVPVTVQDGRICSIYKLMMKLHKPKHYPKYTDVTLKDWEETLRVSFVRG 1266

Query: 1372 LEDAIEKHVELLCKIGGIENSMSSARSNEVETDEDTSGSISHXXXXXXXXXXXXXXXXXX 1193
            LEDAIE ++ LL KI GI N  + A+ N     ED     S+                  
Sbjct: 1267 LEDAIENNIALLAKISGITNFKTDAQPNSSNGAEDDP---SNGKTNDDDDDDDDGDADDT 1323

Query: 1192 XXXXDLGSDLQKRKQQTTDEMDYEDGSEDGSVQQESPIE----VEKERRKDNRSHDGSAT 1025
                DLG D QK K+Q  D++DY+DG E+ +++     E    VE  +  ++   DG   
Sbjct: 1324 EGAEDLGLDAQKSKRQVVDDVDYDDGPEEETLEDGELSEDLEGVEDAKDNEHVKDDGDGK 1383

Query: 1024 TEDEVLKDTD------DENDEDYASKMLYENGEMREPKSSDXXXXXXXXXXKRGELPMKK 863
             +++   D D      +END+     + Y  G     KS                   KK
Sbjct: 1384 DDEDGKGDEDGSDIEVNENDKKVTLGVNYSQGPEENSKSQPV---------------SKK 1428

Query: 862  NDRRVFVAVNGLSFEVHFGFTDEPHLLLGQ----IAQRTAKKVSMEGSGKISECRMVEYD 695
             DRRV+V      FE+HF FTDEPH+LL Q    IAQ+TA+KV ++  GK+ +C+ +   
Sbjct: 1429 FDRRVYVKFEKRHFEIHFKFTDEPHILLAQLLSTIAQKTAEKVCIQNFGKVGQCKAI--T 1486

Query: 694  ATEKTVRWDEKKIKKHSDVXXXXXXXXXXXRYWALKAAGTDFNAFWEMQDELDVTRIYSN 515
              E  V +  +   K  ++              AL+ +G  F +FWEMQD+L+V  +YSN
Sbjct: 1487 CKESGVIYYGEDDSKREEIPSSVKEKIP-----ALQTSGIHFKSFWEMQDDLNVRYVYSN 1541

Query: 514  NIHAVLTTYGVEAARRTIITEVKNVFEAYGVKVDYRHLSLIADYMTHTGGYRPMSRHGSI 335
            N+HA+L+TYGVEAA+ TII EV+NVF++YG+ V+ RHL LIAD+MTH+G YRPMSR GSI
Sbjct: 1542 NVHAILSTYGVEAAKETIIREVQNVFKSYGISVNIRHLMLIADFMTHSGCYRPMSRKGSI 1601

Query: 334  AESLSPLAKMSFETASKFIVEAASRGLADDLETPSSRICLGLPVKMGTGSFDLMQKLD 161
            A+S SP  K+ FETAS FIVEAA  G  D+L++PS+RICLGLPVKMGTG  +L+QKL+
Sbjct: 1602 ADSTSPFLKICFETASNFIVEAACHGQVDNLDSPSARICLGLPVKMGTGCHELIQKLE 1659


>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
            lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
            ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
          Length = 1678

 Score = 1181 bits (3055), Expect = 0.0
 Identities = 656/1250 (52%), Positives = 826/1250 (66%), Gaps = 20/1250 (1%)
 Frame = -2

Query: 3850 LRLTYPERVTPWNVGKLRDAIVNGPEVHPGAISYADKVSTVKLPSNKKMRIAISRKLPSS 3671
            L+LTYPERVTPWNV KLR+AI+NGP++HPGA  Y+DK+STVKLPS +K R AI+RKL SS
Sbjct: 475  LKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKLSTVKLPSTEKARRAIARKLLSS 534

Query: 3670 RGVVTQSGNNSEYEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTFRMH 3491
            RG  T+ G   +  FEGK V+RH++DGD+VLVNRQPTLHKPS+MAH+VRVL+GEKT R+H
Sbjct: 535  RGATTELGKTCDINFEGKTVHRHMRDGDVVLVNRQPTLHKPSLMAHIVRVLRGEKTLRLH 594

Query: 3490 YANCSSYNADFDGDEMNVHLPQDEISHAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVSA 3311
            YANCS+YNADFDGDEMNVH PQDEIS AEAYNIVNAN QY  P+ GD +R LIQDHIVS+
Sbjct: 595  YANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPLRALIQDHIVSS 654

Query: 3310 VXXXXXXXXXXXDEFNQLLYGSGVFAVAPGSFSNNQAKKISIIDSEGVMQHVLPAVWKPK 3131
            V           D FNQLL+ SGV  +   SFS    KK+ +  S+  +  V PA+ KP 
Sbjct: 655  VLLTKRDTFLDKDHFNQLLFSSGVTDMVLSSFSGRSGKKVMVSASDAELLTVTPAILKPV 714

Query: 3130 PLWTGKQVITALLNHLTRGCEPFSLEKEIKIPDKYFQRAPKKVQPGKDE--KKNSENQPR 2957
            PLWTGKQVITA+LN +T+G  PF++EK  K+P  +F+   ++V+P   +  KK   ++  
Sbjct: 715  PLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLTKKKKIDESW 774

Query: 2956 KEEKNTPNQLIKSEMKTSENSLVIWKNELVQGVIDKAQFGQFGLVHTVQEXXXXXXXXXX 2777
            K+  N             E+ L+I KNE V GVIDKAQF  +GLVHTV E          
Sbjct: 775  KQNLN-------------EDKLLIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNL 821

Query: 2776 XXXXXXLFTIFLQLHGFTCGVDDLIILPDKDMKRKEILD--QDVGNEVHSKFVNCVPD-- 2609
                  LFT+FLQ+HGFTCGVDDLIIL D D +R + L   ++VG  V  K      D  
Sbjct: 822  LSVFSRLFTVFLQIHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQ 881

Query: 2608 IAPKELQWELEKVICRNRESASTSLDLMMRRKFKD-QQENISKELLLTELLKPFPKNCIS 2432
            I P++++  +E+++  + ESA  SLD  +         + +  +LL   LLK    NCIS
Sbjct: 882  IDPQDMRSRIERILYEDGESALASLDRSIVNDLNQCSSKGVMNDLLSDGLLKTPGMNCIS 941

Query: 2431 LMTVSGAKGGTVNFQQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDFTSRAGGYVTDRF 2252
            LMT+SGAKG  VNFQQISS LGQQDLEGKRVPRMVSGKTLPCF PWD++ RAGG+++DRF
Sbjct: 942  LMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRF 1001

Query: 2251 LSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYSVRDADGSIV 2072
            LSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLK+ YD +VRDADGSI+
Sbjct: 1002 LSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKINYDCTVRDADGSII 1061

Query: 2071 QFKYGEDGVDVHRTSFLKNFEALVNNQETLRQKFQYE--HEFNAYVDKLPEGLEEDAEIF 1898
            QF+YGEDGVDVHR+SF++ F+ L  NQ+ + Q+   +     N+Y+  LP  L+  AE F
Sbjct: 1062 QFQYGEDGVDVHRSSFIEKFKELAINQDMVLQRCSEDMLSGANSYISDLPISLKNGAEKF 1121

Query: 1897 FMKLKNRESEELLKVSKISKRANRTDFLKLVNQKYLSSLAPPGEPVGVIAAQSVGEPSTQ 1718
               +   E          SK   + + LKLV  K+ +SLA PGEPVGV+AAQSVGEPSTQ
Sbjct: 1122 VEAMPMNE-------RIASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQ 1174

Query: 1717 MTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPVLTCPFLHLKSKDDANSLLGKMK 1538
            MTLNTFHLAGRGEMNVTLGIPRLQEILMTA+  IKTP++TCP L  K+K+DAN + GK++
Sbjct: 1175 MTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADIKTPIMTCPLLKGKTKEDANDITGKLR 1234

Query: 1537 KITVADIVESMEVHLLP--VHKDSEDRIYKLLIK-FKP-----HDFISLEDLEETLAHAF 1382
            KITVADI++SM++ ++P  V+K+    I+KL I  +KP     H  I+ +D EET+   F
Sbjct: 1235 KITVADIIKSMDLSVVPYTVYKNEVCSIHKLKINLYKPEHYPKHTDITEKDWEETMTVVF 1294

Query: 1381 LRELEDAIEKHVELLCKIGGIENSMSSARSNEVETDEDTSGSISHXXXXXXXXXXXXXXX 1202
            LR+LEDAIE H+++L +I GI N       NE + D+  SG                   
Sbjct: 1295 LRKLEDAIEIHMKMLHRIRGICNDKGPEAGNETDNDDSVSGK---------QNKDDGDDD 1345

Query: 1201 XXXXXXXDLGSDLQKRKQQTTDEMDYEDGSEDGSVQQESPIEVEKERRKDNRSHDGSATT 1022
                   DLGSD QK+K+Q TDEMDYE+ SED    + S I   ++   D+ + D   + 
Sbjct: 1346 GEGTEVDDLGSDAQKQKKQVTDEMDYEENSED-ETNEPSSISGVEDPEMDSENEDAEVSK 1404

Query: 1021 EDEVLKDTDDENDEDYASKMLYENGEMREPKS--SDXXXXXXXXXXKRGELPMKKNDRRV 848
            E     DT +  +E   SK      E  EP+               KR +     +DR +
Sbjct: 1405 E-----DTPEPQEEADVSK-----EETMEPQKEVKAVKNVKEQSKKKRRKFVGATSDRHI 1454

Query: 847  FVAVNGLSFEVHFGF-TDEPHLLLGQIAQRTAKKVSMEGSGKISECRMVEYDATEKTVRW 671
            FV   G  FEVHF F TD+PH+LL QIAQ+TA+KV ++ SGKI  C +      +     
Sbjct: 1455 FVRGEGEKFEVHFQFATDDPHILLAQIAQKTAQKVYIQDSGKIERCTVANCGDPQVIYHG 1514

Query: 670  DEKKIKKHSDVXXXXXXXXXXXRYWALKAAGTDFNAFWEMQDELDVTRIYSNNIHAVLTT 491
            D  K ++                  AL A+G DF A WE QD+LDV  +YSN+IH +L  
Sbjct: 1515 DNPKERREISNDEKKASP-------ALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNV 1567

Query: 490  YGVEAARRTIITEVKNVFEAYGVKVDYRHLSLIADYMTHTGGYRPMSRHGSIAESLSPLA 311
            +GVEAAR TII E+ +VF++YG+ V  RHL+LIADYMT +GGYRPMSR G IAES SP  
Sbjct: 1568 FGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFC 1627

Query: 310  KMSFETASKFIVEAASRGLADDLETPSSRICLGLPVKMGTGSFDLMQKLD 161
            +M+FETA+KFIV+AA+ G  D LETPS+RICLGLP   GTG FDLMQ+++
Sbjct: 1628 RMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDLMQRVE 1677