BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00001311
         (3929 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]  1806   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1799   0.0  
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1798   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1797   0.0  
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1791   0.0  
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...  1787   0.0  
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1767   0.0  
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...  1747   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1742   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...  1737   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...  1737   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1720   0.0  
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe...  1699   0.0  
gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]      1698   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1685   0.0  
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1674   0.0  
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]      1657   0.0  
ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1653   0.0  
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1652   0.0  
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis...  1650   0.0  

>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 1806 bits (4678), Expect = 0.0
 Identities = 874/1198 (72%), Positives = 1021/1198 (85%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            MGS+ S+  LVVTQISVGGFD+ V AKMLSEY EE +G V RCRLK SSTP DSYP Y++
Sbjct: 1    MGSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 3672 DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRMI 3493
            D   VQR N+Y+KV PHAFVHFA+S + + AL AAG  EL+LG + L VSLGPENP+R+ 
Sbjct: 61   DAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLN 120

Query: 3492 ERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAFS 3313
            +RRRT +PF+ S+V +E+GVLVS+  F VGW+GP +GVDFLVD FN TC++LF++DT FS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFS 180

Query: 3312 FKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEESV 3133
            F+GE R+A+I+CNFK+EF VREINEIK+ +D    +ILLQLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 3132 PYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLHL 2953
             +DLLDDDD WIRTTD T SGAIGRCNTYRISI PRNG +  KA+A+    RV   ++  
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 2952 GEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLLR 2773
             + L ++DEPDFG+ + D FFC Q  +G++FKVLFL NAV+HKGI+NQHQM N+FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVLFLANAVLHKGIVNQHQMINEFFYLLR 359

Query: 2772 DQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLIIT 2593
               EEVNLAALKH++SYK P+ +A ++L  +QKWL+KNPKL++R  +LDDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 2592 PARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTAN 2413
            P +AYC+PP VELSNRVLRNY+ VADRFLRVTFMDEGM+ +N+NVL YYAA IVR++T+N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2412 SKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINWM 2233
            S  QRT +FQRVKSILS+GF+LCGRKYSFLAFS+NQLRDRSAWFFAE+ KI V  II+WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2232 GRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLAA 2053
            GRF+NRNVAKCAARMGQCFSSTYATVEVP+SE++  +PDIERNGYVFSDGIGMIS DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2052 EVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICSW 1873
            EVAE+L LS NPP AYQIR+AGCKGV+ACWP+K DG RL LRPSMKKF+SNH ILEICSW
Sbjct: 600  EVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 1872 PRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQGN 1693
             RFQPGFLNRQI+TLLS+LDV+D IFWEMQ+ MI  L++MLVDSDVAFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1692 TAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQG 1513
            TAA+ML+AGFKP++EPHLRGML++IRA+QLGDLR +ARIFVPSGRWLMGCLDEL  LEQG
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1512 QCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPEL 1333
            QCFIQVS PS ENCF  HGSKFS+ +KNLQVV+G V IAKNPCLHPGDVRIL+AV  P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 1332 QHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKAL 1153
             HLYDCLVFPQKGDRPH++EASGSDLDGDLYFVTWDEN+IPPS+KSW PM+Y PAE K L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQL 899

Query: 1152 PREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFPK 973
             R+V   DIIDFF+KNMV ESLG ICNAHVVHADLS+ GALD+KC KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 972  TGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAASALAFVPK 793
            TGK+VT+P   KPK+YPDFMGKEEFQ+++SKKILGKLYR+VKD CD E   ++ L  VPK
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 792  DIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSSK 613
            DIPYD  LEI GS  FI+ AWN KCSYDGQLNGLLGQYKVN EEEVVTGHIWSMPKYS+K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 612  KQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPAWV 433
            KQG+LKERLK+AYN LRK+FR VFE+MEPDF LL D+EKN +YERKASAWYQVTYHP WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 432  KKSLELQVPEGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
             +SLELQ+P+    TVMLSF WIAAD+LARIKIR  G+  ++S KPI+SL +Y+AD+I
Sbjct: 1140 ARSLELQIPDAVSSTVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRYLADKI 1197


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1799 bits (4659), Expect = 0.0
 Identities = 873/1198 (72%), Positives = 1021/1198 (85%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            MGS+ S+ +LVVTQISVGGFD+ V AKMLSEY EE +G V RCRLK SSTP DSYP ++V
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60

Query: 3672 DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRMI 3493
            D   VQR  DY+KV PHAFVHFA+S + + AL AAG  ELILG + L VSLGPENP+R+ 
Sbjct: 61   DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 3492 ERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAFS 3313
            +RRRT +PF+ S+V IE+GVLVS+D F VGW+GP +GVDFLVD FN  C++LF++DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180

Query: 3312 FKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEESV 3133
            F+GE R+A+I+CNFK+EF VREINEIK+ +D +  +ILLQLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 3132 PYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLHL 2953
             +DLLDDDD WIRTTD T SGAIGRCNTYRISI PRNG +  KA+A+    RV   ++  
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 2952 GEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLLR 2773
             + L ++DEPDFG+ + D FFC Q  +G++FKV+FLVNAV+HKGI+NQHQM N+FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2772 DQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLIIT 2593
               EEVNLAALKH++SYK P+ +A ++L  ++KWL+KNPKL++R  +LDDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 2592 PARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTAN 2413
            P +AYC+PP VELSNRVLRNY+ VADRFLRVTFMDEGM+ +N+NVL YYAA IVR++T+N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2412 SKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINWM 2233
            S  QRT +FQRVKSILS+GF+LCGRKYSFLAFS+NQLRDRSAWFFAE+ KI V  II+WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2232 GRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLAA 2053
            GRF+NRNVAKCAARMGQCFSSTYATVEVP+SE++  +PDIERNGYVFSDGIGMIS DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAV 599

Query: 2052 EVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICSW 1873
            EVAE+L LS NPP AYQIR+AGCKGV+ACWP+K DG RL LRPSMKKF+SNH ILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 1872 PRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQGN 1693
             RFQPGFLNRQI+TLLS+LDV+D IFWEMQ+ MI  L++MLVDSDVAFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1692 TAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQG 1513
            TAAIML+AGFKP++EPHLRGML++IRA+QLGDLR +ARIFVPSGRWLMGCLDEL  LEQG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1512 QCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPEL 1333
            QCFIQVS PS ENCF  HG KFS+ +KNLQVV+G V IAKNPCLHPGDVRIL+AV  P L
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 1332 QHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKAL 1153
             HLYDCLVFPQKGDRPH++EASGSDLDGDLYFVTWDENLIPPS+KSW PM+Y PAE K +
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQM 899

Query: 1152 PREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFPK 973
             R+V   DIIDFF+KNMV ESLG ICNAHVVHADLS+ GALD+KC KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 972  TGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAASALAFVPK 793
            TGK+VT+P   KPK+YPDFMGKEEFQ+++SKKILGKLYR+VKD CD E   ++ L  VP 
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 792  DIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSSK 613
            DIPYD  LEI GS AFI+ AWN KCSYDGQL+GLLGQYKVN EEEVVTGHIWSMPKYS+K
Sbjct: 1020 DIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 612  KQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPAWV 433
            KQG+LKERLK+AYN LRK+FR VFE+MEPDF LL D+EKN +YERKASAWYQVTY+P WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 432  KKSLELQVPEGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
             +SLELQ+P+    TVMLSF WIAAD+LARIKIR  G+  ++S KPI+SL +Y+ D I
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1798 bits (4656), Expect = 0.0
 Identities = 872/1198 (72%), Positives = 1019/1198 (85%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            MGS+ S+  LVVTQIS GGFD+ V AKMLSEY EE +G V RCRLK SSTP DSYP Y++
Sbjct: 1    MGSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 3672 DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRMI 3493
            D   VQR N+Y+KV PHAFVHFA+S + + AL AAG  ELILG + L VSLGPENP+R+ 
Sbjct: 61   DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 3492 ERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAFS 3313
            +RRRT +PF+ S+V +E+GVLVS+D F VGW+GP +GVDF VD FN TC++LF++DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFS 180

Query: 3312 FKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEESV 3133
            F+GE R+A+I+CNFK+EF VREINEIK+ +D +  +ILLQLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 3132 PYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLHL 2953
             +DLLDDDD WIRTTD T SGAIGRCNTYRISI PRNG +  KA+A+    RV   ++  
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 2952 GEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLLR 2773
             + L +KDEPDFG+ + D FFC Q  +G++FKV+FLVNAV+HKGI+NQHQM N+FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2772 DQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLIIT 2593
             + EEVN AALKH++SYK P+ +A ++L  +QKWL+KNPKL+DR  +LDDIVEVRRL+IT
Sbjct: 360  SRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419

Query: 2592 PARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTAN 2413
            P +AYC+PP VELSNRVLRNY+ VADRFLRVTFMDEGM+ +N+NVL YYAA IVR++T+N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2412 SKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINWM 2233
            S  QRT +FQRVKSILS+GF+LCGRKYSFLAFS+NQLRDRSAWFFAE+ KI V  II+WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2232 GRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLAA 2053
            GRF+NRNVAKCAARMGQCFSSTYATVEVP+ E++  +PDIERNGYVFSDGIGMIS DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2052 EVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICSW 1873
            EVAE+L LS NPP AYQIR+AGCKGV+ACWP+K DG RL LRPSMKKF+SNH ILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 1872 PRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQGN 1693
             RFQPGFLNRQI+TLLS+LDV+D IFWEMQ+ MI  L++MLVDSDVAFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1692 TAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQG 1513
            TAAIML+AGFKP++EPHLRGML++IRA+QLGDLR +ARIFVPSGRWLMGCLDEL  LEQG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1512 QCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPEL 1333
            QCFIQVS PS ENCF  HG KFS+ ++NLQVV+G V IAKNPCLHPGDVRIL+AV  P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 1332 QHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKAL 1153
             HLYDCLVFPQKGDRPH++EASGSDLDGDLYFVTWDENLIPPS+KSW PM+Y PAE K L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 1152 PREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFPK 973
             R+V   DIIDFF+KNMV ESLG ICNAHVVHADLS+ GALD+KC KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 972  TGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAASALAFVPK 793
            TGK+VT+P   KPK+YPDFMGKEEFQ+++SKKILGKLYR+VKD CD E   ++ L  VPK
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 792  DIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSSK 613
            DIPYD  LEI GS AFI+ AWN KCSYDGQL+GLLGQYKVN EEEVVTGHIWSMPKYS+K
Sbjct: 1020 DIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 612  KQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPAWV 433
            KQG+LKERLK+AYN LRK+FR VFE+M+PDF LL D+EKN +YERKASAWYQVTYHP WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 432  KKSLELQVPEGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
             +SLELQ+P+    TVMLSF WIAAD+LARIKIR   +  ++S KPI+SL +Y+ D I
Sbjct: 1140 ARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1797 bits (4655), Expect = 0.0
 Identities = 872/1198 (72%), Positives = 1018/1198 (84%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            MGS+  +  LVVTQISVGGFD+ V AKMLSEY EE +G V RCRLK SSTP DSYP Y++
Sbjct: 1    MGSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 3672 DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRMI 3493
            D   VQR N+Y+KV PHAFVHFA+S + + AL AAG  ELILG + L VSLGPENP+R+ 
Sbjct: 61   DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 3492 ERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAFS 3313
            +RRRT +PF+ S+V +E+GVLVS+D F VGW+GP +GVDFLVD FN TC++LF++DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 3312 FKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEESV 3133
            F+GE R+A+I+CNFK+EF VREINEIK+ +D +  +IL QLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240

Query: 3132 PYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLHL 2953
             +DLLDDDD WIRTTD T SGAIGRCNTYRISI PRNG +  KA+A+   RRV   ++  
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300

Query: 2952 GEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLLR 2773
             + L +KDEPDFG+ + D FFC Q  +G++F+VLFLVNAV+HKGI+NQHQM N+FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLR 359

Query: 2772 DQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLIIT 2593
               EEVN AALKH++SYK P+ +A ++L  +QKWL+KNPKL+DR  +LDDIVEVRRL+IT
Sbjct: 360  SHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419

Query: 2592 PARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTAN 2413
            P +AYC+PP VELSNRVLRNY+ VADRFLRVTFMDEGM+ +N+NVL YYAA IVR++T+N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2412 SKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINWM 2233
            S  QRT +FQRVKSILS+GF+LCGRKYSFLAFS+NQLRDRSAWFFAE+ KI V  II+WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2232 GRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLAA 2053
            GRF+NRNVAKCAARMGQCFSSTYATVEVP+SE++  +PDIERNGYVFSDGIGMIS DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2052 EVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICSW 1873
            EVAE+L LS NPP AYQIR+AGCKGV+ACWP+K DG RL LRPSMKKF+SNH ILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 1872 PRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQGN 1693
             RFQPGFLNRQI+TLLS+LDV+D IFWEMQ+ MI  L++MLVDSDVAFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1692 TAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQG 1513
            TAA+ML+AGFKP++EPHLRGML++IRA+QLGDLR +ARIFVPSGRWLMGCLDEL  LEQG
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1512 QCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPEL 1333
            QCFIQVS PS ENCF  HG KFS+ +KNLQVV+G V IAKNPCLHPGDVRIL+AV  P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 1332 QHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKAL 1153
             HLYDCLVFPQKGDRPH++EASGSDLDGDLYFVTWDENLIPPS+KSW PM+Y PAE K L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 1152 PREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFPK 973
             R+V   DIIDFF+KNMV ESLG ICNAHVVHADLS+ GALD+KC KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 972  TGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAASALAFVPK 793
            TGK+VT+P   KPK+YPDFMGKEEFQ+++SKKILGKLYR+VKD CD E   ++ L  VPK
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 792  DIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSSK 613
            DIPYD  LEI GS  FI+ AWN KCSYDGQLNGLLGQYKVN EEEVVTG+IWSMPKY++K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAK 1079

Query: 612  KQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPAWV 433
            KQG+LKERLK+AYN LRK+FR VFE+MEPDF LL D+EKN +YERKASAWYQVTYHP WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 432  KKSLELQVPEGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
             +SLELQ+ +    TVMLSF WIAAD+LARIKIR   +  ++S KPI+SL +Y+ D I
Sbjct: 1140 ARSLELQLADAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1791 bits (4638), Expect = 0.0
 Identities = 868/1198 (72%), Positives = 1020/1198 (85%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            MGS+ S+ +LVVTQISVGGFD+ V AKMLSEY EE +G V RCRLK S+TP DSYP Y++
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60

Query: 3672 DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRMI 3493
            D   V R  DY+KV PHAFVHFA+S + + AL AAG  ELILG + L VSLGPENP+R+ 
Sbjct: 61   DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 3492 ERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAFS 3313
            +RRRT +PF+ S+V +E+GVLVS+D F VGW+GP +GVDFLVD FN TC++LF++DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 3312 FKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEESV 3133
            F+GE R+A+I+CNFK+EF VREINEIK+ +D +  +IL QLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240

Query: 3132 PYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLHL 2953
             +DLLDDDD WIRTTD T SGAIGRCNTYRISI PRNG +  KA+A+   RRV   ++  
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300

Query: 2952 GEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLLR 2773
             + L +KDEPDFG+ + D FFC Q  +G++FKV+FLVNAV+HKGI+NQHQM N+FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2772 DQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLIIT 2593
             + EEVNLAALKH++SYK P+ +A ++L  +QKWL+KNPKL++R  +LDDIVEVRRL+IT
Sbjct: 360  SRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 2592 PARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTAN 2413
            P +AYC+PP VELSNRVLRNY+ VADRFLRVTFMDEGM+ +N+NVL YYAA IVR++T+N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2412 SKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINWM 2233
            S  QRT +FQRVKSILS+GF+LCGRKYSFLAFS+NQLRDRSAWFFAE+ KI V  II+WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2232 GRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLAA 2053
            GRF+NRNVAKCAARMGQCFSSTYATVEVP+SE++  +PDIERNGYVFSDGIGMIS DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2052 EVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICSW 1873
            EVAE+L L+ NPP AYQIR+AG KGV+ACWP+K DG  L LRPSMKKF+SNH ILEICSW
Sbjct: 600  EVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659

Query: 1872 PRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQGN 1693
             RFQPGFLNRQI+TLLS+LDV+D IFWEMQ+ MI  L++MLVDSDVAFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1692 TAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQG 1513
            TAA+ML+AGFKP++EPHLRGML++IRA+QLGDLR +ARIFVPSGRWLMGCLDEL  LEQG
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1512 QCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPEL 1333
            QCFIQVS PS ENCF  HG KFS+ +KNLQVV+G V IAKNPCLHPGDVRIL+AV  P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 1332 QHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKAL 1153
             HLYDCLVFPQKGDRPH++EASGSDLDGDLYFVTWDENLIPPS+KSW PM+Y PAE K L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 1152 PREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFPK 973
             R+V   DIIDFF+KNMV ESLG ICNAHVVHADLS+ GALD+KC KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 972  TGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAASALAFVPK 793
            TGK+VT+P   KPK+YPDFMGKEEFQ+++SKKILGKLYR+VKD CD E   ++ L  VPK
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 792  DIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSSK 613
            DIPYD  L I GS  FI+ AWN KCSYDGQL+GLLGQYKVN EEEVVTGHIWSMPKYS+K
Sbjct: 1020 DIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 612  KQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPAWV 433
            KQG+LKERLK+AYN LRK+FR VFE+M+PDF LL D+EKN +YERKASAWYQVTY+P WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 432  KKSLELQVPEGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
             +SLELQ+P+    TVMLSF WIAAD+LARIKIR  G+  ++S KPI+SL +Y+ D+I
Sbjct: 1140 ARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score = 1787 bits (4629), Expect = 0.0
 Identities = 866/1198 (72%), Positives = 1016/1198 (84%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            MGS+ S+ +LVVTQISVGGFD+ V AKMLSEY EE +G V RCRLK S+TP DSYP Y+V
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDV 60

Query: 3672 DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRMI 3493
            D + V R  DY+KV PHAFVHFA+S + + AL AAG   LILG + L VSLGPENP+R+ 
Sbjct: 61   DAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLN 120

Query: 3492 ERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAFS 3313
            +RRRT +PF+ S+V +E+GVLVS+D F VGW+GP +GVDF VD FN  C++LF++DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFS 180

Query: 3312 FKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEESV 3133
            F+GE ++A+I+CNFK+EF VREINEIK+++D +  +ILLQLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 3132 PYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLHL 2953
             +DLLDDDD WIRTTD T SGAIGRCNTYRISI PRNG +  KA+A+    RV   ++  
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 2952 GEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLLR 2773
             + L ++DEPDFG+ + D FFC Q  +G++FKV+FLVNAV+HKGI+NQHQM N+FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2772 DQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLIIT 2593
               EEVNLAALKH++SYK P+ +A ++L  +QKWL+KNPKL++R  +LDDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 2592 PARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTAN 2413
            P +AYC+PP VELSNRVLRNY+ VADRFLRVTFMDEGM+ +N+NVL YYAA IVR++T+N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 2412 SKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINWM 2233
            S  QRT +FQRVKSILS+GF+LCGRKYSFLAFS+NQLRDRSAWFFAE+ KI V  II+WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 2232 GRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLAA 2053
            GRF+NRNVAKCAARMGQCFSSTYATVEVP+SE++  +PDIERNGYVFSDGIGMIS DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAL 599

Query: 2052 EVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICSW 1873
            EVAE+L LS NPP AYQIR+AGCKGV+ACWP+K DG  L LRPSMKKF+SNH ILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659

Query: 1872 PRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQGN 1693
             RFQPGFLNRQI+TLLS+LDV+D IFWEMQ+ MI  LN+MLVDSDVAFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGN 719

Query: 1692 TAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQG 1513
            TAAIML+AGFKP++EPHLRGML++IRA+QLGDLR +ARIFVPSGRWLMGCLDEL  LEQG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 1512 QCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPEL 1333
            QCFIQVS PS ENCF  HG KFS+ +KNLQVV+G V IAKNPCLHPGDVRIL+AV  P L
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 1332 QHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKAL 1153
             HLYDCLVFPQKGDRPH++EASGSDLDGDLYFVTWDENLIPPS+KSW PM+Y PAE K L
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 1152 PREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFPK 973
             R+V   DIIDFF+KNMV ESLG ICNAHVVHADLS+ GALD+KC KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 972  TGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAASALAFVPK 793
            TGK+VT+P   KPK+YPDFMGKEEFQ+++SKKILGKLYR+VKD CD E   ++ L  VP 
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 792  DIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSSK 613
            DIPYD  LEI GS  F+  AWN KCSYDGQL+GLLGQYKVN EEEVVTGHIWSMPKYS+K
Sbjct: 1020 DIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 612  KQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPAWV 433
            KQG+LKERLK+AYN LRK+FR VFE+M+PDF LL D+EKN +YERKASAWYQVTY+P WV
Sbjct: 1080 KQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 432  KKSLELQVPEGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
             +SLELQ+P+    TVMLSF WIAAD+LARI IR  G+  ++S KPI+SL +Y+ D I
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
            tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
            tuberosum]
          Length = 1198

 Score = 1767 bits (4577), Expect = 0.0
 Identities = 857/1198 (71%), Positives = 1009/1198 (84%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            MGS+ S+ +LVVTQISVGGF + V AKMLSE  E+ +G V RCRLKTSSTP DSYP Y++
Sbjct: 1    MGSEGSEKDLVVTQISVGGFSNDVNAKMLSECLEDQVGQVWRCRLKTSSTPPDSYPTYDI 60

Query: 3672 DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRMI 3493
            D+ +V+R N+Y KVEPHAFVHFA+S + Q+AL AA   EL L  + LKVSLGPENP  M 
Sbjct: 61   DVENVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENPFNMN 120

Query: 3492 ERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAFS 3313
            +RRRT++PF+ S+V +EIGVLVS D F VGW+GP SGV+FLVD FN TC++LF+RDTAF 
Sbjct: 121  KRRRTIMPFKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGTCKILFTRDTAFC 180

Query: 3312 FKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEESV 3133
            FKGE ++AVI+CNFK+EF +REINEI + +D +  ++LLQL SSPLV+YRTADDDIEESV
Sbjct: 181  FKGEGKHAVIKCNFKIEFLLREINEINECKDFASLVLLLQLTSSPLVFYRTADDDIEESV 240

Query: 3132 PYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLHL 2953
             +DLLDDDD WIRTTD T SGAIGR NTYRISI PRNG +L KA+ + +E RV   +   
Sbjct: 241  AFDLLDDDDQWIRTTDITCSGAIGRFNTYRISIRPRNGPSLKKAMNYFRESRVPVVEQGN 300

Query: 2952 GEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLLR 2773
             + L ++DEPDFG+ L + FFC Q  +G++FKVLFLVNAV+ KGI+NQHQM  +FF LLR
Sbjct: 301  RQMLRVRDEPDFGVSLSEPFFCFQNHEGISFKVLFLVNAVLQKGIVNQHQMTAEFFSLLR 360

Query: 2772 DQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLIIT 2593
               E VNLAALKHI+SYK P+ +A ++L  VQKWL KNP L++R  QLDD+VEVRRL+IT
Sbjct: 361  KHQEGVNLAALKHIFSYKRPVNDAIQKLASVQKWLFKNPNLLERTGQLDDVVEVRRLVIT 420

Query: 2592 PARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTAN 2413
            P +AYC+PP VELSNRVLR Y+ V+DRFLRVTFMDEGM+ +N+NVL YYAA IVR++T++
Sbjct: 421  PTKAYCLPPTVELSNRVLRKYKHVSDRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSS 480

Query: 2412 SKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINWM 2233
            S  QRTG+FQRVKSILS+GFYLCGR+YSFLAFS+NQLRDRSAWFFAE  +I V NIINWM
Sbjct: 481  SNPQRTGIFQRVKSILSKGFYLCGRRYSFLAFSANQLRDRSAWFFAEAPEIRVPNIINWM 540

Query: 2232 GRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLAA 2053
            G+F NRNVAKCAARMGQCFSSTYATVEV  SE++  +PDIERNGYVFSDGIGM+S DL+ 
Sbjct: 541  GKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMSADLSI 600

Query: 2052 EVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICSW 1873
            EVA +LQLS NPPCAYQIR+AGCKGV+ACWP++KDG RL LRPSMKKF+SNH ILEICSW
Sbjct: 601  EVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSW 660

Query: 1872 PRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQGN 1693
             R QPGFLNRQIITLLS+L+V+D +FWEMQ+ M+ KL+++LVDSDVAFDV+TASCAE GN
Sbjct: 661  TRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGN 720

Query: 1692 TAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQG 1513
            TAAIML+AGFKP++EPHLRGML +IRAAQLGDLR + R+FVPSGRWLMGCLDEL  LEQG
Sbjct: 721  TAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVPSGRWLMGCLDELRKLEQG 780

Query: 1512 QCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPEL 1333
            QCFIQVS PS E CF  HG KFSE +KNLQV++G V IAKNPCLHPGDVRIL+AV  P L
Sbjct: 781  QCFIQVSSPSLETCFVKHGPKFSEIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPGL 840

Query: 1332 QHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKAL 1153
             HLYDCLVFPQKGDRPH++EASGSDLDGDLYFVTWDENLIPPS+KSW PMDY+PAE K L
Sbjct: 841  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMDYAPAEAKQL 900

Query: 1152 PREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFPK 973
             R+V+  DIIDFF+KNMV ESLG ICNAHVVHADLS+ GALD+KC KLAELAA AVDFPK
Sbjct: 901  GRQVQHTDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 960

Query: 972  TGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAASALAFVPK 793
            TGK+VT+P   KPK+YPDFMGKE FQT++SKKILGKLYR+V D  D E   +S L FVPK
Sbjct: 961  TGKLVTMPFDLKPKMYPDFMGKEPFQTYESKKILGKLYRQVIDVYDAEGGESSGLEFVPK 1020

Query: 792  DIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSSK 613
            DIPYD ++EI G E FI+ AWN KCSYDGQLNGLLGQYKVN EEEVVTGHIWSMPKYS+K
Sbjct: 1021 DIPYDTNIEILGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAK 1080

Query: 612  KQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPAWV 433
            KQG+LKERLK+AYN LRK+FR VFEQMEPDF +L  +EKN +YERKASAWY+VTYHP WV
Sbjct: 1081 KQGELKERLKHAYNTLRKEFRNVFEQMEPDFDMLPVDEKNDMYERKASAWYRVTYHPHWV 1140

Query: 432  KKSLELQVPEGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
             +SLELQ+P+     VMLSF WIAAD++ARIKIR  G+ N++S KPI+ L +Y+ ++I
Sbjct: 1141 TRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNSDSTKPINFLGRYLVNKI 1198


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
            gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
            6 [Solanum lycopersicum]
          Length = 1197

 Score = 1747 bits (4525), Expect = 0.0
 Identities = 849/1199 (70%), Positives = 1003/1199 (83%), Gaps = 1/1199 (0%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            MGS+ SD+N+VVTQISVGGF + V AKMLSEY EE +G V RCRLKTSSTP DSYP Y++
Sbjct: 1    MGSEDSDMNIVVTQISVGGFSNDVNAKMLSEYLEEQVGQVWRCRLKTSSTPPDSYPTYDI 60

Query: 3672 DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRMI 3493
            D+  V+R N+Y KVEPHAFVHFA+S + Q+AL AA   EL L  + LKVSLGPEN   M 
Sbjct: 61   DVEKVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENTFNMN 120

Query: 3492 ERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAFS 3313
            ERRRT +P++ S+V +EIGVLVS D F VGW+GP SGV+FLVD FN  C++LF+RDTAF 
Sbjct: 121  ERRRTFMPYKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAFC 180

Query: 3312 FKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEESV 3133
            FKGE ++AVI+CNFK+EF +REINEI + +D S  ++LLQLASSPLV+YRTADDDIEESV
Sbjct: 181  FKGEGKHAVIKCNFKIEFLLREINEINECKDFSSLVLLLQLASSPLVFYRTADDDIEESV 240

Query: 3132 PYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLHL 2953
             +DLLDDDD WIRTTD T SGAIGR NTYR+SI PRNG +  KA+ + +E RV    +  
Sbjct: 241  AFDLLDDDDQWIRTTDITFSGAIGRFNTYRVSIRPRNGPSFKKAMNYFRESRVPV--VEQ 298

Query: 2952 GEKLL-IKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLL 2776
            GE++L +++EPDFG  + + FFC Q  +G++FKVLFLVNAV+HKGI+NQHQM  +FF LL
Sbjct: 299  GEQMLRVRNEPDFGESVSEPFFCFQNHEGISFKVLFLVNAVLHKGIVNQHQMTAEFFSLL 358

Query: 2775 RDQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLII 2596
            R   E VNLAALKHI+SYK P+ +A ++L  VQKWL  NP L++R  QLDD+VEVRRL+I
Sbjct: 359  RKHQEGVNLAALKHIFSYKRPVNDAIRKLASVQKWLFNNPNLLERTGQLDDVVEVRRLVI 418

Query: 2595 TPARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTA 2416
            TP +AYC+PP VELSNRVLR Y+ ++DRFLRVTFMDEGM+ +N+N L YYAA IVR++T+
Sbjct: 419  TPTKAYCLPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIVREITS 478

Query: 2415 NSKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINW 2236
            +S  QRTG+FQRVK I+++GFYLCGR+YSFLAFS+NQLRDRSAWFFAE  +I V +IINW
Sbjct: 479  SSNPQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINW 538

Query: 2235 MGRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLA 2056
            MG+F NRNVAKCAARMGQCFSSTYATVEV  SE++  +PDIERNGYVFSDGIGM++ DL+
Sbjct: 539  MGKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMTADLS 598

Query: 2055 AEVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICS 1876
             EVA +LQLS NPPCAYQIR+AGCKGV+ACWP++KDG RL LRPSMKKF+SNH ILEICS
Sbjct: 599  IEVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICS 658

Query: 1875 WPRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQG 1696
            W R QPGFLNRQIITLLS+L+V+D +FWEMQ+ M+ KL+++LVDSDVAFDV+TASCAE G
Sbjct: 659  WTRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAG 718

Query: 1695 NTAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQ 1516
            NTAAIML+AGFKP++EPHLRGML +IRAAQLGDLR + R+FV SGRWLMGCLDEL  LEQ
Sbjct: 719  NTAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQ 778

Query: 1515 GQCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPE 1336
            GQCFIQVS PS E CF  HG +FSE +KNLQVV+G V IAKNPCLHPGDVRIL+AV  P 
Sbjct: 779  GQCFIQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPG 838

Query: 1335 LQHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKA 1156
            L HLYDCLVFPQKGDRPH++EASGSDLDGDLYFVTWDENLIPPS+KSW PM Y+PAE K 
Sbjct: 839  LHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQ 898

Query: 1155 LPREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFP 976
            L R+V+  DIIDFF KNMV ESLG ICNAHVVHADLS+ GA+D+KC KLAELAA AVDFP
Sbjct: 899  LGRQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFP 958

Query: 975  KTGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAASALAFVP 796
            KTGK+VT+P   KPK+YPDFMGKE FQ+++SKKILGKLYR+V D  D E   +S L +VP
Sbjct: 959  KTGKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESSGLEYVP 1018

Query: 795  KDIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSS 616
            KDIPYD +LEI G E FI+ AWN KCSYDGQLNGLLGQYKVN EEEVVTGHIWSMPKYS+
Sbjct: 1019 KDIPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSA 1078

Query: 615  KKQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPAW 436
            KKQG+LKERLK+AYN LRK+FR VFEQMEPDF LL  +EKN +YERKA AWY+VTYHP W
Sbjct: 1079 KKQGELKERLKHAYNMLRKEFRNVFEQMEPDFDLLPIDEKNDMYERKAFAWYRVTYHPHW 1138

Query: 435  VKKSLELQVPEGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
            V +SLELQ+P+     VMLSF WIAAD++ARIKIR  G+ N +S KPIDSL +Y+ ++I
Sbjct: 1139 VTRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNFDSTKPIDSLGRYLVNKI 1197


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1742 bits (4512), Expect = 0.0
 Identities = 850/1200 (70%), Positives = 1008/1200 (84%), Gaps = 2/1200 (0%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            M S+ S+ ++VVTQIS+GGFD YVTA  L+ Y E+TIG V RCRLKTSSTP +SYP +E+
Sbjct: 1    MESEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEI 60

Query: 3672 -DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRM 3496
             D + ++R  DY+KVEPHAFVHF +  A   ALDAAG  EL L  + LKVSLGPE P  +
Sbjct: 61   IDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHL 120

Query: 3495 IERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAF 3316
             +RRRT  PF+  +V++EIG+LVSRD +F GW+GP SGVDFLVD F+ TC+ LF++DTAF
Sbjct: 121  NQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAF 180

Query: 3315 SFKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEES 3136
            SFKG  ++AVI+CNFKVEF VREINE++Q +D S  I+LLQL+SSP VYYRTADDDIEE+
Sbjct: 181  SFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEET 240

Query: 3135 VPYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLH 2956
            VP+DLLDDDDPWIRTTDFT SGAIGRCN+YRISIPPR GA L KA+ +L+ RRV   +  
Sbjct: 241  VPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDS 300

Query: 2955 LGEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLL 2776
               +L ++DEPDFG+P+ D FFCIQ+++G++F+V+FLVNAVMHKGIINQHQ+ +KFFDLL
Sbjct: 301  PKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLL 360

Query: 2775 RDQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLII 2596
            R Q +++N+AALKHI SY+ P+++A +RL+LV KWL+KNPKL+  P++LDDIVEVRRL+I
Sbjct: 361  RSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVI 420

Query: 2595 TPARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTA 2416
            TP++AYC+PPEVELSNRVLRNY++V+DRFLRVTFMDEGMQT+N NVL+YY APIV+ +T+
Sbjct: 421  TPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITS 480

Query: 2415 NSKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINW 2236
            NS  Q+T +F+RVK+IL+ GFYLCGRKYSFLAFSSNQLRDRSAWFFAE+KK  V  I +W
Sbjct: 481  NSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSW 540

Query: 2235 MGRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLA 2056
            MG+FTNRNVAKCAARMGQCFSSTYATVEVP+ E+   +PDI+RNGY FSDGIG I PDLA
Sbjct: 541  MGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLA 599

Query: 2055 AEVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICS 1876
             EVAE+L+L +  P AYQIR+AGCKGV+ACWPS  DG RL  RPSM KF S+H ILEICS
Sbjct: 600  MEVAEKLKL-EGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICS 658

Query: 1875 WPRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQG 1696
            W RFQPGFLNRQI+TLLSAL+V D IFW+MQESMI KLNQML D+DVAFDVL ASCAEQG
Sbjct: 659  WTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQG 718

Query: 1695 NTAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQ 1516
            NTAAIML+AGFKP+TEPHL+GMLT IRAAQ   LRE+ARIFVPSGRWLMGCLDEL VLEQ
Sbjct: 719  NTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQ 778

Query: 1515 GQCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPE 1336
            GQCFIQVS PS ENCF  HGS+FS  +KNL+V++G VAIAKNPCLHPGDVRIL+AV AP 
Sbjct: 779  GQCFIQVSSPSLENCFLKHGSRFS-AQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPG 837

Query: 1335 LQHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKA 1156
            L+HL DCLVFPQKGDRPH++EASGSDLDGDLYFVTW+E LIPPS++SWPPM Y  AE KA
Sbjct: 838  LEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKA 897

Query: 1155 LPREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFP 976
            L REV   DIIDFFTKNMV E+LG ICNAHVVHAD S+ GALD+ C  LAE AATAVDFP
Sbjct: 898  LAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFP 957

Query: 975  KTGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAASALAFVP 796
            KTGK+VTLPP  KPK+YPDFMGKEEFQT++S KILGK+YR++KDA +E+ + +S   F  
Sbjct: 958  KTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGA 1017

Query: 795  KDIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSS 616
              +P+D+DL I GS  FI  AW  KCSYDGQLNGLLGQYKV  EEEVVTGH+WSMPKY S
Sbjct: 1018 DKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKS 1077

Query: 615  KKQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPAW 436
            +KQG+L ERLK+AY+ L+K+FR++FE+M  DF  L+D+EKN LYE+KASAWYQVTYHP W
Sbjct: 1078 RKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTW 1137

Query: 435  VKKSLELQVP-EGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
            VKKSLELQ P E FGE VMLSF WI AD+LARIKIR  G GN +S KPI+SL +++ DRI
Sbjct: 1138 VKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1197


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score = 1737 bits (4499), Expect = 0.0
 Identities = 841/1200 (70%), Positives = 1000/1200 (83%), Gaps = 2/1200 (0%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            M ++ S    VVTQ+S+GGFD +VTAK L EY E  IG+V RCRLKTS TP +SYP +E+
Sbjct: 1    METEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 3672 -DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRM 3496
             DI+ + R  DY++VEPHAFVHFA   +   A+DAA   EL L N+ LK SLGPENP  +
Sbjct: 61   TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120

Query: 3495 IERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAF 3316
             +RRR   PF+LS V +EIG LVSRD FFVGW+GPP+GVDFLVD F+ TCR  FSR+TAF
Sbjct: 121  NQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180

Query: 3315 SFKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEES 3136
            SFK    +AVI+C+FKVEF VR+INEIKQY ++SC ++LLQLAS+P V+YRTADDDIE S
Sbjct: 181  SFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVS 240

Query: 3135 VPYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLH 2956
            VP+DLLDDDDPWIRTTDFT SGAIGRC++YR+SIPPR+G  L KA+  LKERRV+    +
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEE--Y 298

Query: 2955 LGEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLL 2776
            L   + I+DEPDFG+P+ D FFCI +++G+ F VLFLVNAVMHKGI NQHQ+ N FFDLL
Sbjct: 299  LRRPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLL 358

Query: 2775 RDQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLII 2596
            R+QP EVN+AALKHIY Y+ P+++A K+L++ Q+WL+KNPK     ++LDDI E+RRL+I
Sbjct: 359  RNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVI 418

Query: 2595 TPARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTA 2416
            TP +AYC+PPEVELSNRVLR Y+DVADRFLRVTFMDEG+QTMN N L+Y+AAPIVR +T+
Sbjct: 419  TPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITS 478

Query: 2415 NSKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINW 2236
             S  Q+T +F+RV+SIL++GFYLCGR+YSFLAFSSNQLRDRSAWFFAE++ I V  I +W
Sbjct: 479  YSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSW 538

Query: 2235 MGRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLA 2056
            MG+FTN+N+AKCAARMGQCFSSTYAT+EVP  E++  +PDI+RNGY FSDGIGMI+PDLA
Sbjct: 539  MGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLA 598

Query: 2055 AEVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICS 1876
             EVAE+L+   +PPCAYQIR+AGCKGV+ACWP + DG RL LR SM KF+SNH ILEICS
Sbjct: 599  REVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICS 658

Query: 1875 WPRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQG 1696
            W RFQPGFLNRQIITLLSAL+V D +FW+MQE M+ KLNQMLVDSDVAFDVLTASCAEQG
Sbjct: 659  WTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQG 718

Query: 1695 NTAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQ 1516
            N AAIML+AGFKP+ EPHLRGMLT +RAAQL  LRE+ARIFVPSGRWLMGCLDEL VLEQ
Sbjct: 719  NVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQ 778

Query: 1515 GQCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPE 1336
            GQCFIQVS    ENCF  HGSKFSET+KNLQVV+G V IAKNPCLHPGD+RIL+AV AP 
Sbjct: 779  GQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPG 838

Query: 1335 LQHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKA 1156
            L HLYDCLVFPQKG+RPH +EASGSDLDGDLYFVTWDENLIPPS++SW PM Y  AE K 
Sbjct: 839  LHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQ 898

Query: 1155 LPREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFP 976
            L R V   DI++FF KNM  E+LG ICNAHVV ADLS+ GALD+KC  LAELAATAVDFP
Sbjct: 899  LTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFP 958

Query: 975  KTGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAASA-LAFV 799
            KTGKIV++P   KPK+YPDFMGKEE Q+++SKKILG+LYR++KDA D++  AAS+ L FV
Sbjct: 959  KTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFV 1018

Query: 798  PKDIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYS 619
              DIPYD DLE+ G+  FI  AW+ KCSYDGQLNGLL QYKV  EEEVVTGH+WSMPK S
Sbjct: 1019 RGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGS 1078

Query: 618  SKKQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPA 439
            S+KQGDLKERLK++YN L+++FR+VFE+M+ DF  L D+EKN+LYERKASAWYQVTYHP 
Sbjct: 1079 SRKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPH 1138

Query: 438  WVKKSLELQVPEGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
            W++KSLELQ  +G G +VMLSF WIAAD+LARIKIR + IGN +S KP++SL KY+ADR+
Sbjct: 1139 WIQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score = 1737 bits (4498), Expect = 0.0
 Identities = 828/1200 (69%), Positives = 1004/1200 (83%), Gaps = 2/1200 (0%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            M ++ S    VVTQ+SVGGFD +VTAK L EY +  IG+V RCRLKTS TP +SYP +E+
Sbjct: 1    MEAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 3672 -DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRM 3496
             DI+ ++R  DY++V PHAFVHFA   +   A++A+G  EL L N++LKVSLGP+NP  +
Sbjct: 61   TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTL 120

Query: 3495 IERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAF 3316
             +RRRT  PF+LS+V  EIG LVSRD FFVGW+GPPSGVDFLVD F+ TC+  FSR+TAF
Sbjct: 121  NQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAF 180

Query: 3315 SFKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEES 3136
            S K  + +AVI+C+FKVEF VR+INEI QY ++SC ++LLQLAS+P V+YRTADDDIE  
Sbjct: 181  SLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAW 240

Query: 3135 VPYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKT-HDL 2959
            VP+DLLDDDDPWIRTTDFT SGAIGRC++YR+SIPPR+G+ L KA+ +LKERRV+   + 
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEE 300

Query: 2958 HLGEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDL 2779
            +   ++ I DEPDFG+P+ D FFCI +++G+ F+VLFLVNAVMHKGI NQHQ+ N FFDL
Sbjct: 301  NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDL 360

Query: 2778 LRDQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLI 2599
            LR+Q  EVN++ALKHI +Y+ P++NA +RL+ VQ+WL+KNP L   P+QL D+VE+RRL+
Sbjct: 361  LRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLV 420

Query: 2598 ITPARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVT 2419
            ITP +AYC+PPEVELSNRVLR Y+DVADRFLRVTFMDEG+Q MN NVL+YY APIVRD+T
Sbjct: 421  ITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDIT 480

Query: 2418 ANSKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIIN 2239
            +NS  Q+T +F+RV+SIL++GFYLCGR+YSFLAFS+NQLRD+SAWFF+E + I V ++ +
Sbjct: 481  SNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKS 540

Query: 2238 WMGRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDL 2059
            WMG+FTNRN+AKCAARMGQCFSSTYAT+EVP  E++  +PDIERNGYVFSDGIG+I+PDL
Sbjct: 541  WMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDL 600

Query: 2058 AAEVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEIC 1879
            A EVAE+L+L  +PPCAYQIR+AGCKGV+ACWP K DG RL LRPSM KF+SNH  LEIC
Sbjct: 601  AREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEIC 660

Query: 1878 SWPRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQ 1699
            SW RFQPGFLNRQIITLLS L+V D +FW+MQE+M+ KLNQM V+SDVAFDVLTASCA+Q
Sbjct: 661  SWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQ 720

Query: 1698 GNTAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLE 1519
            GN AAIML+AGFKP+ EPHLRGMLT +RAAQL DLRE+ RIFVPSGRWLMGCLDEL +LE
Sbjct: 721  GNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLE 780

Query: 1518 QGQCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAP 1339
            QGQCFIQVS  S E CF  HG+KFSE  KNLQV++G V IAKNPCLHPGDVR+L+AV  P
Sbjct: 781  QGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVP 840

Query: 1338 ELQHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETK 1159
             L HLYDCLVFPQKG+RPHT+EASGSDLDGDLYFVTWDENLIPPS++SW PM Y  AE K
Sbjct: 841  GLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAK 900

Query: 1158 ALPREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDF 979
             L R V   DII+FF KNMV ++LG ICNAHVVHADLS+ GA D  C  LAELAATAVDF
Sbjct: 901  LLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDF 960

Query: 978  PKTGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAASALAFV 799
            PKTGK+V++PP  KPK+YPDFMGKEE+Q+++S+KILG+LYR++KDA DE+ AA+S L  V
Sbjct: 961  PKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLV 1020

Query: 798  PKDIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYS 619
            P DIPYD DLE+ G+  +I  AW+ KCSYDGQLNGLL QYKV  EEEVVTGHIWSMPKYS
Sbjct: 1021 PGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYS 1080

Query: 618  SKKQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPA 439
            S+KQG+LK+RLK++YN L+K+FR++FE+M+ +F+ L D EKN LYE+KASAWYQV YHP 
Sbjct: 1081 SRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPH 1140

Query: 438  WVKKSLELQVPEGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
            WVKKSLELQ P+G G +VMLSF WIAAD+LARIKIR    GN +S KP++SL KY+ADR+
Sbjct: 1141 WVKKSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRM 1200


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1720 bits (4454), Expect = 0.0
 Identities = 836/1205 (69%), Positives = 989/1205 (82%), Gaps = 7/1205 (0%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            M + R +   VVTQ+S GGFD  VTA+ L  Y +  IG V RCRLKTS TP +SYP +E+
Sbjct: 1    METKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEI 60

Query: 3672 -DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRM 3496
             D + +QR + Y++VEPHAFVHFA+  +   A +AAG  EL    R +KVSLGPENP  +
Sbjct: 61   TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHL 120

Query: 3495 IERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAF 3316
             +RRRT IPF+LS+V +EIG LVSRD F VGW+GPPSGVDFLVD F+  C+  F+RDTAF
Sbjct: 121  NQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAF 180

Query: 3315 SFKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEES 3136
            SFKG   +AVIRC+FK+EF VR+INEIKQY D+SC +ILLQLAS+P V+YRTADDDIE  
Sbjct: 181  SFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVL 240

Query: 3135 VPYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLH 2956
            VP+DLLDDDDPWIRTTDFTPSGAIGRCN+YR+SIPPR+GA L +AL  L+ERRV+   L 
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLR 300

Query: 2955 LGEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLL 2776
                L +  EP++ +P+ D FFCI +++GV+F ++FLVNAVMHKGI NQHQ+ + FFDLL
Sbjct: 301  --RPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLL 358

Query: 2775 RDQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLII 2596
            R+QP +VN+AAL+HI SYK P+++A KRL+ VQ+WL+KNPKL    +QLDDIVE+RRL I
Sbjct: 359  RNQPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAI 418

Query: 2595 TPARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTA 2416
            TP RAYC+PPEVELSNRVLR Y+D+AD+FLRVTFMDEG+QTMN N L YY APIVRD+T+
Sbjct: 419  TPTRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITS 478

Query: 2415 NSKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINW 2236
            NS  Q+T +F+RVKSIL+ GFYLCGRKYSFLAFSSNQLRDRSAWFFAE+ K  V+ I NW
Sbjct: 479  NSFSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNW 538

Query: 2235 MGRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLA 2056
            MG+FTNRN+AKCAARMGQCFSSTYATVEVP++E  L +PDIERN Y+FSDGIGMI+PDLA
Sbjct: 539  MGKFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLA 598

Query: 2055 AEVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICS 1876
             EVAE+L+L  NPPCAYQIR+AGCKGV+ACWP+  DG RL LR SM KF SNH  LEICS
Sbjct: 599  KEVAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICS 658

Query: 1875 WPRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQG 1696
            W RFQPGFLNRQIITLLS LDV D IFW+MQ  M+ KLNQM +D+DVAFDV+TASCAEQG
Sbjct: 659  WTRFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQG 718

Query: 1695 NTAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQ 1516
            NTAAIML+AGF P+TEPHL GMLT IRAAQL  LRE+ RIFVPSGRWLMGCLDEL VLE 
Sbjct: 719  NTAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEH 778

Query: 1515 GQCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPE 1336
            GQCFIQVS PS E+CF  HGS+FSE++K LQVV+G V +AKNPCLHPGD+RIL+AV APE
Sbjct: 779  GQCFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPE 838

Query: 1335 LQHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKA 1156
            L HL+DCLVFPQKGDRPHT+EASGSDLDGDLYFVTWDENLIPPS++SW PM Y  AE K 
Sbjct: 839  LHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQ 898

Query: 1155 LPREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFP 976
            L R V   DIIDFF KNMV E+LG ICNAHVVHADLS+ GALD+ C KLAELAATAVDFP
Sbjct: 899  LNRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFP 958

Query: 975  KTGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDAC------DEEQAAAS 814
            KTGK+VT+PP  KPKLYPDFMGKE++Q++ S KILG+LYR+VKD        D++ A +S
Sbjct: 959  KTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSS 1018

Query: 813  ALAFVPKDIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWS 634
             L  V  DIPYDKDLE++GS  +I  AW+ KCSYDGQL GLL QYKV  EEEVVTGHIWS
Sbjct: 1019 ELNLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWS 1078

Query: 633  MPKYSSKKQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQV 454
            MPK +S+KQG+LKERLK +Y+ L+K+FR+VFE+M+ DF+ L+++EKN+LYE+KASAWYQV
Sbjct: 1079 MPKCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQV 1138

Query: 453  TYHPAWVKKSLELQVPEGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKY 274
             YHP WV KS+ELQ P+  G   MLSF WIAAD+LARIKIRC G    ++ KP++SL KY
Sbjct: 1139 AYHPKWVNKSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKY 1198

Query: 273  VADRI 259
            +ADRI
Sbjct: 1199 LADRI 1203


>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score = 1699 bits (4399), Expect = 0.0
 Identities = 815/1199 (67%), Positives = 991/1199 (82%), Gaps = 1/1199 (0%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            M  + S+   VVTQ+S GGF  +  AK L  Y E+ IG+V RCRLKTS TP +S+P +E+
Sbjct: 1    MEFEGSENGSVVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEI 60

Query: 3672 DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRMI 3493
            + + V+R +DY +VEPHAFVHF +  +V  A+DAAG  EL   N  LKVSLGPENP+ + 
Sbjct: 61   NTADVKRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLN 120

Query: 3492 ERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAFS 3313
             RRRT  PF+LS+V +EIG LV +D FF  W+GPP GVDF+VD F+ TC+  F+ DTAFS
Sbjct: 121  RRRRTKTPFKLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFS 180

Query: 3312 FKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEESV 3133
            FKG  ++AVI+C+FKVEF VREI EIKQY D+S  +ILL+L SSP V YRTADDDI++SV
Sbjct: 181  FKGTKKHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSV 240

Query: 3132 PYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLHL 2953
            P+DLLDDDDPWIRTTDFTPSGAIGRCN+YR+ IPPR+GA L KA+ +L+ERRVK   +  
Sbjct: 241  PFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKW 300

Query: 2952 GEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLLR 2773
              K  I+DEPDFG+   + FF IQY++G++F+++FLVNAVMHKG +NQHQ+ + FF LLR
Sbjct: 301  PPK--IQDEPDFGMSNTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLR 358

Query: 2772 DQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLIIT 2593
             QP+E+N+AALKH+ SY+SP+++A +RL++VQ WL+KNPKL+  P++LDDI EVRRL+IT
Sbjct: 359  SQPKEINVAALKHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVIT 418

Query: 2592 PARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTAN 2413
            P +AYC+PPEVELSNRVLR Y++VADRFLRVTFMDEGMQ +N NVL+YY APIV+++T+N
Sbjct: 419  PTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSN 478

Query: 2412 SKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINWM 2233
            S LQ+T +F+R ++IL+ GFYLCGRKY+FLAFSSNQLRDRSAWFFAE   I V  I +WM
Sbjct: 479  SFLQKTNVFKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGKITSWM 538

Query: 2232 GRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLAA 2053
            G+F N+NVAKCAARMGQCFSSTYATVEV +SE++  +PDI+RNGYVFSDGIGMI+PDLA 
Sbjct: 539  GKFNNKNVAKCAARMGQCFSSTYATVEVTSSEVN-DIPDIKRNGYVFSDGIGMITPDLAL 597

Query: 2052 EVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICSW 1873
            EVAE+L+L +NPPCAYQIRFAGCKGV+ACWPSK DGFRL LR SM KFES H  LEICSW
Sbjct: 598  EVAEKLKLDRNPPCAYQIRFAGCKGVVACWPSKGDGFRLSLRTSMNKFESKHTTLEICSW 657

Query: 1872 PRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQGN 1693
             R+QPGFLNRQIITLLS L+V+D IFW MQE M+ KLNQMLVD+DVAFDVLTASCAEQGN
Sbjct: 658  TRYQPGFLNRQIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASCAEQGN 717

Query: 1692 TAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQG 1513
             AAIML+AGFKP+TEPHLRGMLT I+AAQL  LRE+ARIFV SGRWLMG LDEL VLEQG
Sbjct: 718  AAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLEQG 777

Query: 1512 QCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPEL 1333
            QCF+QVS P  E+CF+ HGS F++  +NLQV++G+V IAKNPCLHPGD+RIL+AV AP L
Sbjct: 778  QCFVQVSTPLLESCFAKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAVDAPGL 837

Query: 1332 QHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKAL 1153
             HLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPS+KSW PM Y PAE K  
Sbjct: 838  HHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKLQ 897

Query: 1152 PREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFPK 973
             R V   DIIDFF KNM  E+LG ICNAHVVHAD SD GALD  C KLAELAA AVDFPK
Sbjct: 898  GRPVTQQDIIDFFVKNMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAALAVDFPK 957

Query: 972  TGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAASALAFVPK 793
            TGKIV+LP   KP+LYPDF+GKE+ Q+++S KILG+LYR+V+DA DE+ A +S L + P 
Sbjct: 958  TGKIVSLPQHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATSSELHYFPS 1017

Query: 792  DIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSSK 613
            DIPYD DLE+ G+  F+  AW  KCSYDGQL GL+GQYKV  EEE+VTGH+WS+PK +SK
Sbjct: 1018 DIPYDMDLEVPGAADFVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNSK 1077

Query: 612  KQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPAWV 433
            KQG+LKERL ++YN L+K+FR++FE ++ + + L+D+EKN+L E+KASAWYQVTYHP WV
Sbjct: 1078 KQGELKERLSHSYNALKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQVTYHPKWV 1137

Query: 432  KKSLELQVPEGFGE-TVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
            K+S  LQ P+G G+  VMLSF WIAAD+LARIKI+C+G+ + +S KPI+SL++Y+ADRI
Sbjct: 1138 KQSPPLQEPDGPGDVVVMLSFAWIAADYLARIKIKCHGVEHIDSTKPINSLKRYLADRI 1196


>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
          Length = 1197

 Score = 1698 bits (4398), Expect = 0.0
 Identities = 819/1199 (68%), Positives = 985/1199 (82%), Gaps = 1/1199 (0%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            M S  S+ + VVTQ+SVGGF  +V AK L EYF+  +G+V RCRLKTS TP +SYP +E+
Sbjct: 1    MESQGSEKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEI 60

Query: 3672 -DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRM 3496
             D + +QR +DY+KVEPHAFVHFA+ +    A+DAAG  EL+  N+ LKVSLGPENP+ +
Sbjct: 61   LDSTVIQRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYL 120

Query: 3495 IERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAF 3316
              RRR   PF+LS+V ++IG +VSRD FFVGW+GPP GVDFLVD F+ TC+  FSRDTAF
Sbjct: 121  NRRRRNTTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAF 180

Query: 3315 SFKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEES 3136
            SFKG   YAVI+C+FKVEF VR+INEIKQY + S  ++ LQLASSP V+YRTADD+IEES
Sbjct: 181  SFKGTTEYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEES 240

Query: 3135 VPYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLH 2956
            VP+DLLDDDD WIRTTDFTPSGAIGRCNTYR+ I PR+GA L KAL +L+E+RV     +
Sbjct: 241  VPFDLLDDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMD--Y 298

Query: 2955 LGEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLL 2776
            +   L I DEPDFG  + D F+CI Y++G+ F+++FLVNAVMHKGI NQHQ+   FF+LL
Sbjct: 299  VRWPLRISDEPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLL 358

Query: 2775 RDQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLII 2596
            RDQP EVN+AALKHIYSY+ P+++A KRL+ V  WL++NP L   P+QLDDIVE+RRL+I
Sbjct: 359  RDQPREVNVAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVI 418

Query: 2595 TPARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTA 2416
            TP +A+C+ PEVELSNRVLR Y++VADRFLRVTFMDEGMQT+N NVL YYAA IVRDVT+
Sbjct: 419  TPTKAHCLLPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTS 478

Query: 2415 NSKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINW 2236
                Q+TG+F+RV+SIL+ GFYLCGRKYSFLAFS+NQLRD SAWFFAE+ K  V  I+ W
Sbjct: 479  TFFSQKTGVFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQILRW 538

Query: 2235 MGRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLA 2056
            MG+FTNRN+AKCAARMGQCFSSTYATVEVP++E++  +PDIERNGYVFSDGIG I+PDLA
Sbjct: 539  MGKFTNRNIAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLA 598

Query: 2055 AEVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICS 1876
             EVA++L+L  NPPCAYQIR+AGCKGV+ACWP + DG RL LR SM KF S+H  LEICS
Sbjct: 599  KEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEICS 658

Query: 1875 WPRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQG 1696
            W RFQPGFLNRQIITLLS   V D +FWEMQ +M+ KLN++LVD+DVAF+VLT+SC+EQG
Sbjct: 659  WTRFQPGFLNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQG 718

Query: 1695 NTAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQ 1516
            N AAIML+AGFKP+TEPHLRG+LT +RA+QL  LRE+ARIFVPSGRWLMG LDEL VLEQ
Sbjct: 719  NAAAIMLSAGFKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQ 778

Query: 1515 GQCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPE 1336
            GQCFIQVS PS ENCF  HGS+F+ET+KN +V++G V IAKNPCLHPGD+RIL+AV AP 
Sbjct: 779  GQCFIQVSNPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPG 838

Query: 1335 LQHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKA 1156
            L HLYDCLVFPQKG+RPHT+EASGSDLDGDLYFVTW++ LIPP +KSWPPM Y P ETK 
Sbjct: 839  LHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGETKE 898

Query: 1155 LPREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFP 976
            + REV   DIIDFF KNMV E LGTICNAHVVHADLS+ GALD+KC  LAELAATAVDFP
Sbjct: 899  IQREVNHKDIIDFFAKNMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVDFP 958

Query: 975  KTGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAASALAFVP 796
            KTGKIV++P   KPKLYPDFMGKEE+Q+++S+KILG+LYR +KD  DE+ + +S +    
Sbjct: 959  KTGKIVSMPANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDVYDEDLSESSEINLDS 1018

Query: 795  KDIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSS 616
             DI YD DLE+ GS  +I+ AW  KCSYD QL GLLGQYKV  EEEVVTGHIWSMPKY+S
Sbjct: 1019 PDINYDTDLEVTGSADYIDDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPKYTS 1078

Query: 615  KKQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPAW 436
            +K GDLKE+L ++Y  LRK+FR++FE M+ + + L+++E+N LYERKASAWYQVTYHP W
Sbjct: 1079 RKLGDLKEKLGHSYGALRKEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYHPKW 1138

Query: 435  VKKSLELQVPEGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
            V+K LELQ  +G    VMLSF WIAAD+LARIKIR  G GN +  KP++SL KY+AD+I
Sbjct: 1139 VEKKLELQKSDGADPVVMLSFAWIAADYLARIKIRSQGTGNVDFSKPVNSLVKYLADKI 1197


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score = 1685 bits (4363), Expect = 0.0
 Identities = 819/1191 (68%), Positives = 979/1191 (82%), Gaps = 2/1191 (0%)
 Frame = -3

Query: 3825 LVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV-DISSVQRK 3649
            LV  Q+S GGFD  V A  L +Y E  +G V RCRLKTS TP +SYP + V + + V++ 
Sbjct: 10   LVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNTAEVRKT 69

Query: 3648 NDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRMIERRRTVIP 3469
            +DY+KVEPHAFVHFA    V  A+DAAG  EL L  ++LKVSLGPENP R+ +R RT  P
Sbjct: 70   DDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTSTP 129

Query: 3468 FRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAFSFKGENRYA 3289
            F+L +V +EIG LVSRD FFV W+GP SG DFLVD F+ TC+  F+RD AF+ K    +A
Sbjct: 130  FKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTEHA 189

Query: 3288 VIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEESVPYDLLDDD 3109
            VI+C FKVEF VREIN +KQY + SC  ILLQLASSP V+YRTADDDI   VP+D+LDDD
Sbjct: 190  VIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDD 249

Query: 3108 DPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLHLGEKLLIKD 2929
            DPWIRTTDFTPSGAIGRCN+YRISI  R+   L K + +L ERRV+   L     + I++
Sbjct: 250  DPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSL--SRPITIRE 307

Query: 2928 EPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLLRDQPEEVNL 2749
            EPDF +P+ D FFCI Y++G++F+++FLVNAVMHKGIINQHQ+ + FFDLLR Q  EVN+
Sbjct: 308  EPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNV 367

Query: 2748 AALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLIITPARAYCIP 2569
            AALKHIYSYK P+++A KRL+LVQ+WL+K+P+L   P+Q+DDIVEVRRL+ITP +AYC+P
Sbjct: 368  AALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLP 427

Query: 2568 PEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTANSKLQRTGM 2389
            PEVELSNRVLR Y+D+ADRFLRVTFMDEG+QTMN NVL Y+ APIVRD+T NS  Q+T +
Sbjct: 428  PEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRV 487

Query: 2388 FQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINWMGRFTNRNV 2209
            F+RV+SILS GFYLCGRK+SFLAFSS+QLRD SAWFF+E+ K  V +I  WMGRFT++N+
Sbjct: 488  FKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNI 547

Query: 2208 AKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLAAEVAERLQL 2029
            AKCAARMGQCFSSTYATVEVP +E+D  +PDI+RNGYVFSDGIG I+PDLA EVA++L+L
Sbjct: 548  AKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKL 607

Query: 2028 SKNPP-CAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICSWPRFQPGF 1852
              NPP CAYQIR+AGCKGV+ACWP+K DG R+ LR SM KF+S+H  LEICSW RFQPGF
Sbjct: 608  DVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGF 667

Query: 1851 LNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQGNTAAIMLT 1672
            LNRQIITLLS L+V D +FW MQ+SM+ KLNQMLVDSDVAF+VLTA+CAEQGNTAAIML+
Sbjct: 668  LNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLS 727

Query: 1671 AGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQGQCFIQVS 1492
            AGF P+TEPHLRGMLT IRAAQL  LRE+ARIFVP+GRWLMGCLDEL VLE GQCFIQVS
Sbjct: 728  AGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVS 787

Query: 1491 QPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPELQHLYDCL 1312
            +P   NCFS HGS+F+ET+K LQV++G+V IAKNPCLHPGD+RIL+AV  PEL HLYDCL
Sbjct: 788  EPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCL 846

Query: 1311 VFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKALPREVKLA 1132
            VFPQKGDRPHT+EASGSDLDGDLYFVTWDENLIPPS+KSWPPM+Y+ AE K L R V   
Sbjct: 847  VFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQR 906

Query: 1131 DIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFPKTGKIVTL 952
            DII+FF K+MV E+LGTICNAHVVHAD S+ GALD+ C  LAELAATAVDFPKTGKIVT+
Sbjct: 907  DIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTM 966

Query: 951  PPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAASALAFVPKDIPYDKD 772
            P   KPKLYPDFMGKE +Q+++S KILG+LYR+ KDA DE+ + +S +   P DI YD D
Sbjct: 967  PAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTD 1026

Query: 771  LEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSSKKQGDLKE 592
            LE+  S  FI  AWN KCSYDGQLNGLL QYKVN EEE+VTGHIWSMPKY+S+KQG+LKE
Sbjct: 1027 LEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKE 1086

Query: 591  RLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPAWVKKSLELQ 412
            RLK++Y+ LRK+FR+VFE+M+ D +LLS++EKN L+ERKASAWYQVTYHP WVKKSL+LQ
Sbjct: 1087 RLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQ 1146

Query: 411  VPEGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
              +     V+LSF WIA D+LARIKIRC  + N ++ KP++ L +YVADRI
Sbjct: 1147 EQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score = 1674 bits (4336), Expect = 0.0
 Identities = 800/1199 (66%), Positives = 980/1199 (81%), Gaps = 1/1199 (0%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            M  +  + + VVTQ+S GGF S+VTAK L  Y E+ IG+V RCRLKTS TP +S P +E+
Sbjct: 1    MELEERENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEI 60

Query: 3672 -DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRM 3496
             D + ++  +DY+KVEPHAFVHFA+  +V + +DA G  +L   N++LK SLGPEN   M
Sbjct: 61   SDAADIETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNM 120

Query: 3495 IERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAF 3316
             +RRRT IPF+L++V++EIG LV  D FFV WKGP  GVDF+VD F+ TC+  F RDTAF
Sbjct: 121  NKRRRTKIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAF 180

Query: 3315 SFKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEES 3136
            SFKG N++AVI C+FK EF+VREI E K Y +   +++LL+L SSP V YRTADDDI++S
Sbjct: 181  SFKGLNKHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQS 240

Query: 3135 VPYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLH 2956
            V +DLLDDDDPWIRTTDFTP+GAIGRCN YR+ IPPR+GA L KA+ +LKERRV+  +L 
Sbjct: 241  VLFDLLDDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQ--ELF 298

Query: 2955 LGEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLL 2776
            + +   I+DEP FG P+ D  F I YQ+ ++F +LFLVNAVMHKGI+NQHQ+   FFDLL
Sbjct: 299  IKKPPRIQDEPGFGNPMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLL 358

Query: 2775 RDQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLII 2596
            R+QPEE+N+AALKH+ SYK P+++A KRL+LVQ+WL++NPKLI  P++LDDI EVRRL+I
Sbjct: 359  RNQPEEINVAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVI 418

Query: 2595 TPARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTA 2416
            TP +AYC+PPEVELSNRVLR Y++VADRFLRVTFMDEGMQTMN NV++ Y APIV+++T 
Sbjct: 419  TPTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITE 478

Query: 2415 NSKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINW 2236
            N+  Q+T ++ R+++IL  GF+LCGRKYSFLAFSSNQLRDRSAWFFAE+K I +  I NW
Sbjct: 479  NTFPQKTKVYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQGIKNW 538

Query: 2235 MGRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLA 2056
            MGRFTNRNVAKCAARMGQCFSSTYATVEVP+++++  +PDIERNGYVFSDGIG I+PDLA
Sbjct: 539  MGRFTNRNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLA 598

Query: 2055 AEVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICS 1876
             EVAE+L+L ++PP AYQIR+ GCKGV+ACWPS  DGFRL LR SM KF S+H  LEICS
Sbjct: 599  MEVAEKLKLDRDPPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTLEICS 658

Query: 1875 WPRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQG 1696
            W R QPGFLNRQIITLLSAL+V D IFW MQE+M+ KL QMLVD+DVAFDVLTASCAEQG
Sbjct: 659  WTRLQPGFLNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQG 718

Query: 1695 NTAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQ 1516
            N+AAIML+AGFKP+TEPHLRGMLT I+AAQL  LRE+ RIFVPSGRWLMGCLDEL VLEQ
Sbjct: 719  NSAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQ 778

Query: 1515 GQCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPE 1336
            GQCF+QVS PS ENCF+ HGS+F +T KNLQV++G+V +AKNPCLHPGD+RIL+AV AP 
Sbjct: 779  GQCFVQVSTPSLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPG 838

Query: 1335 LQHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKA 1156
            L HL+DCLVFPQKG RPHTDEASGSDLDGDLYFVTWDENLIPP +KSW PM+Y PAE K 
Sbjct: 839  LHHLHDCLVFPQKGHRPHTDEASGSDLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEAKL 898

Query: 1155 LPREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFP 976
              R V   D+I+FF +NMV E+LG ICNAHVVH+D S+ GA D+ C KLAELAA AVDFP
Sbjct: 899  SGRSVTSQDLIEFFVRNMVNENLGAICNAHVVHSDRSEYGAFDENCLKLAELAAVAVDFP 958

Query: 975  KTGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAASALAFVP 796
            KTGKIVT+PP  KPKLYPDFMGK+++Q+++S KILG+LYR++ DA DE+ A +S    VP
Sbjct: 959  KTGKIVTMPPHLKPKLYPDFMGKQDYQSYKSNKILGRLYRKICDAYDEDVANSSEQNHVP 1018

Query: 795  KDIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSS 616
             D+ YD DLE+  +  FI  AW  KCSYD QL GL+ QYK+  EEE+VTGH+WSMPKY+S
Sbjct: 1019 SDVKYDMDLEVPKAADFIADAWERKCSYDSQLRGLMTQYKIMREEEIVTGHVWSMPKYTS 1078

Query: 615  KKQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPAW 436
            +KQG+L+ERLK++Y+ L+K+FR+ FE+M+  F+ L D++KN  YE+KASAWYQVTYHP W
Sbjct: 1079 RKQGELQERLKHSYSALKKEFRQFFEKMDTGFESLIDDQKNSFYEQKASAWYQVTYHPDW 1138

Query: 435  VKKSLELQVPEGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
            VKKSL+L  P+G G+ VMLSF WIAAD+LARIKI+   + N +  KPI+ L KY+ADRI
Sbjct: 1139 VKKSLDLHGPDGPGDVVMLSFAWIAADYLARIKIKRREVSNIDPKKPINILTKYLADRI 1197


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score = 1657 bits (4291), Expect = 0.0
 Identities = 797/1200 (66%), Positives = 982/1200 (81%), Gaps = 2/1200 (0%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYE- 3676
            M  + S+ + VVTQIS+GGFD +V AK L ++ E  +G+V RCRLKTS T  +SYP +E 
Sbjct: 1    MELEGSEKDTVVTQISIGGFDRHVKAKDLMDFLEYEVGIVYRCRLKTSCTARESYPTFEN 60

Query: 3675 VDISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRM 3496
            ++  ++    D ++VEPHAFVHFA+  +V   L       L+L N++LKV+LGPE  +RM
Sbjct: 61   INSENIMESIDIRQVEPHAFVHFASPESVNWTLS----NPLMLNNQTLKVTLGPETLYRM 116

Query: 3495 IERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAF 3316
             +RRRT  P +L++V +EIG LV RD FFV W+GP  GVDFLVD F+  C+  F+RDTAF
Sbjct: 117  NQRRRTTTPIKLADVIVEIGNLVRRDEFFVAWRGPSYGVDFLVDPFDGLCKFCFTRDTAF 176

Query: 3315 SFKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEES 3136
            SFK   + A+++C+FKVEF VR+INEIKQY D+S  ++LL LASSP V+YRTADDDIE S
Sbjct: 177  SFKDMAKLAMMKCDFKVEFLVRDINEIKQYTDTSHLVVLLLLASSPRVWYRTADDDIEVS 236

Query: 3135 VPYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLH 2956
            VP+DLLDDDDPWIRTTDFTPSGAIGRCN+YR+SIPPR+G+ L KA+++L+ERRV+  +  
Sbjct: 237  VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGSKLKKAMSYLRERRVQ--ETP 294

Query: 2955 LGEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLL 2776
            L + L I+ EPDF +P+ D  F +  + G+ F+++FL+N ++HKGI NQH + +  FDL 
Sbjct: 295  LRKALRIQSEPDFAVPMSDPIFYVHGKHGIPFEIMFLLNVIVHKGIFNQHNISDGLFDLF 354

Query: 2775 RDQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLII 2596
            R+QP E+NLAALKHI SYK P+++A  +L+ VQ+WL++NPKL+  PRQLDDI EVRRL+I
Sbjct: 355  RNQPREINLAALKHISSYKRPVFDAYAKLKNVQEWLLRNPKLLKIPRQLDDIAEVRRLVI 414

Query: 2595 TPARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTA 2416
            TP RAYC+PPEVELSNRVLR Y++V+DRFLRVTFMDEGMQTMN NVL YY APIV+++T+
Sbjct: 415  TPTRAYCLPPEVELSNRVLRKYKEVSDRFLRVTFMDEGMQTMNLNVLTYYPAPIVKELTS 474

Query: 2415 NSKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINW 2236
            NS  Q+T +F+RVKS+L+ GFYLCG++YSFLAFSSNQLRDRSAWFFAE+ KI V  I  W
Sbjct: 475  NSTSQKTKVFKRVKSLLTDGFYLCGQRYSFLAFSSNQLRDRSAWFFAEDGKITVNGIKKW 534

Query: 2235 MGRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLA 2056
            MGRF NRN+AKCAARMGQCFSSTYATVEVP +E++  + +IERN YVFSDGIGMI+PDLA
Sbjct: 535  MGRFNNRNIAKCAARMGQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMITPDLA 594

Query: 2055 AEVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICS 1876
             EVAE+L+L  NPP AYQIR+AGCKGV+ACWP K DG RL LR SM KF+S H ILEICS
Sbjct: 595  KEVAEKLKLDINPPSAYQIRYAGCKGVVACWPPKGDGIRLSLRRSMNKFDSKHTILEICS 654

Query: 1875 WPRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQG 1696
            W RFQPGFLNRQI+TLLS L+V+D IFW+MQE+M++KLNQML D+DVAF+VLTASC EQG
Sbjct: 655  WTRFQPGFLNRQIVTLLSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASCPEQG 714

Query: 1695 NTAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQ 1516
            N  AIML+AGFKP++EPHL+GMLT IRAAQL  LRE+ARIFVP GRWLMGCLDEL VLEQ
Sbjct: 715  NVGAIMLSAGFKPQSEPHLQGMLTCIRAAQLWGLREKARIFVPLGRWLMGCLDELGVLEQ 774

Query: 1515 GQCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPE 1336
            GQCFIQVS PS ENCFS HGS+FSET+ NL+V++G+V IAKNPCLHPGD+RIL+AV  P 
Sbjct: 775  GQCFIQVSTPSLENCFSKHGSRFSETKNNLEVIKGFVVIAKNPCLHPGDIRILEAVDVPG 834

Query: 1335 LQHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKA 1156
            L HLYDCLVFPQKGDRPH +EASGSDLDGDLYFVTWDENLIPPS+KSW PM Y PA+ + 
Sbjct: 835  LHHLYDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKKSWNPMQYDPAKPRT 894

Query: 1155 LPREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFP 976
            LPR+V   DIIDFF++NMV ESLG ICNAHVVHADLSD GALD+KC  LAELAA AVDFP
Sbjct: 895  LPRDVTQKDIIDFFSRNMVNESLGAICNAHVVHADLSDYGALDEKCLSLAELAAIAVDFP 954

Query: 975  KTGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAASALAFVP 796
            KTG IVT+P   KPK+YPDFMGKEE+Q+++S KI+G+LYR++KD   ++ + +S L  V 
Sbjct: 955  KTGIIVTMPAHLKPKIYPDFMGKEEYQSYKSTKIMGRLYRQIKDEYSDDVSPSSELNIVS 1014

Query: 795  KDIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSS 616
             +IP+D DLE+ G+  F++ AW  KCSYDGQL GL+ QYKV  EEEVVTG IWSMPK++S
Sbjct: 1015 SNIPFDTDLEVPGAADFLDDAWEKKCSYDGQLKGLMIQYKVKREEEVVTGQIWSMPKHNS 1074

Query: 615  KKQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPAW 436
            +K+GDLKERLK++Y  LRK+FR+VFE+++ DF+ L+D+EKNVLYE++ASAWYQ+TYHP W
Sbjct: 1075 RKEGDLKERLKHSYTGLRKEFRQVFEKVDSDFEQLTDDEKNVLYEKRASAWYQITYHPKW 1134

Query: 435  VKKSLELQVP-EGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
            VKKS ++    E     VMLSF WIAAD+LARIKIRC G+G+ +S KPI+SL KY+ADRI
Sbjct: 1135 VKKSQDMHDQLEEVKNVVMLSFAWIAADYLARIKIRCRGVGDADSTKPINSLGKYLADRI 1194


>ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571459266|ref|XP_006581359.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score = 1653 bits (4281), Expect = 0.0
 Identities = 812/1208 (67%), Positives = 985/1208 (81%), Gaps = 10/1208 (0%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            M  + S+ + VVTQIS+GGF S V A  L  Y E+ IG+V RCRLKTS TP +SYP + +
Sbjct: 1    MDLEGSEKDSVVTQISIGGFGSEVKASDLVNYLEDKIGLVYRCRLKTSWTPPESYPEFNI 60

Query: 3672 -DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRM 3496
             D ++++R ++Y+KVEPHAFVHFA+  +V +AL+A+GC +L L N+ LKVS GPENP+ +
Sbjct: 61   IDTANIRRTDNYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPENPYFL 120

Query: 3495 IERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAF 3316
             +RRRT  PF++S+V +EIG LVS   FFV W+GP  GV FLVD F+  CR  FSRDTAF
Sbjct: 121  NQRRRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAF 180

Query: 3315 SFKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEES 3136
            SFKG  + AVI+C+F+V F VR+INEIK+Y D+S  ++LL LASSP V+YRTADDDIEES
Sbjct: 181  SFKGIEKKAVIKCDFQVGFLVRDINEIKRYNDTSYLVVLLHLASSPWVWYRTADDDIEES 240

Query: 3135 VPYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLH 2956
            VP+DLLDDDDPWIRTTDFTPSGAIGRCN YRISIPPR+GA L KA+ +LK +RV+  +L 
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQMQELA 300

Query: 2955 LGEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLL 2776
            L + L   +EPDFG+P+ D FF I +Q+ + F ++FLVNA++HKGI NQH++ ++FF+LL
Sbjct: 301  LKQTLRTLNEPDFGVPMSDAFFYIHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELL 360

Query: 2775 RDQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLII 2596
            ++QP+E+N+AALKH+ SYK P+++A KRL++VQ+WL++NPKL    +QLDDIVEVRRL+I
Sbjct: 361  KNQPKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVI 420

Query: 2595 TPARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTA 2416
            TP++AYCIPPEVELSNRVLR +R+V+D FLRVTFMDEGMQT+N N L+YY APIV+++T+
Sbjct: 421  TPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITS 480

Query: 2415 NSKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINW 2236
            NS  QRT +++RVK+IL QGFY CGRKYSFLAFSSNQLRDRSAWFFAE+ KI   +I NW
Sbjct: 481  NSFSQRTKIYKRVKTILEQGFYFCGRKYSFLAFSSNQLRDRSAWFFAED-KIRCDDIRNW 539

Query: 2235 MGRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLA 2056
            MG+F  RNVAKCAARMGQCFSSTYATVEV  +E++  +PD+ERN Y+FSDGIG+I+ DLA
Sbjct: 540  MGKFNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVITHDLA 599

Query: 2055 AEVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICS 1876
             EVAE+L+L  N P AYQIR+AG KGV+A WP+K DG RL LRPSM KF+S H ILEIC+
Sbjct: 600  REVAEKLKLD-NVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEICA 658

Query: 1875 WPRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQG 1696
            W RFQPGFLNRQIITLLSAL V D +FW+MQE+M+ KLNQMLVD+D+AFDVLT SCAE G
Sbjct: 659  WTRFQPGFLNRQIITLLSALGVPDEVFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEHG 718

Query: 1695 NTAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQ 1516
            N AAIML+ GF P TEPHLRGMLT+ RAAQL  LRE++RIFV SGRWLMG LDE  VLEQ
Sbjct: 719  NAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQ 778

Query: 1515 GQCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPE 1336
            GQCF+QVS PS ENCFS HGS+FSET KNL VV+G+V IAKNPCLHPGDVR+L+AV AP+
Sbjct: 779  GQCFVQVSTPSLENCFSKHGSRFSET-KNLHVVKGFVIIAKNPCLHPGDVRVLEAVDAPD 837

Query: 1335 LQHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKA 1156
            L HL DCLVFPQKGDRPHT+EASGSDLDGDLYFVTWDENLIPPS++SW PM+Y+P E+K 
Sbjct: 838  LHHLNDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKL 897

Query: 1155 LPREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFP 976
              R+V   DII+FF +NMV E LG ICNAHVVHAD SD GALD+KC  LAELAATAVDFP
Sbjct: 898  KTRQVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFP 957

Query: 975  KTGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAASALAFVP 796
            KTGK+VT+PP  KPKLYPDFMGKE  Q+++SKKILG+LYRR+KDA DE+   A  L FV 
Sbjct: 958  KTGKLVTMPPHLKPKLYPDFMGKERHQSYRSKKILGRLYRRIKDAYDED-IDAPYLNFVT 1016

Query: 795  KDIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSS 616
             DIPYDKDLE+ GS  FI  AW  KCSYDGQL+GLLGQYKV  EEEVVTG IWSMPKY+S
Sbjct: 1017 GDIPYDKDLEVPGSADFIADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNS 1076

Query: 615  KKQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPAW 436
            +KQG+LKERLK++Y+ L+K+FR  FE++  D   LS+EEKN+ YE+KASAWYQVTYHP W
Sbjct: 1077 RKQGELKERLKHSYSALKKEFRHTFEKLNSDVGELSEEEKNLFYEQKASAWYQVTYHPEW 1136

Query: 435  VKKSLEL-------QVPEGFGETVMLSFGWIAADFLARIKI--RCNGIGNTNSLKPIDSL 283
            VKKSL+L       Q  +  G TVMLSF WIA D+LAR KI  R    GN +S KP+DSL
Sbjct: 1137 VKKSLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLARTKIRQRHQRCGNFDSTKPVDSL 1196

Query: 282  RKYVADRI 259
             KY+++R+
Sbjct: 1197 AKYLSERL 1204


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score = 1652 bits (4277), Expect = 0.0
 Identities = 789/1200 (65%), Positives = 978/1200 (81%), Gaps = 2/1200 (0%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            MGS+  +  +VVTQ+S GGFDS V A+ L  Y E  IG+V RCRLKTS TP +SYP +EV
Sbjct: 1    MGSEEGE-KIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEV 59

Query: 3672 -DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRM 3496
             ++++V + +DY+KV PHAFVHF +  +   AL AAG GELI  ++ LK SLGPE+P  +
Sbjct: 60   SNVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHI 119

Query: 3495 IERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAF 3316
             +RRRT +PF+LS+V+++IG L   D F V W+GP SG+DFLVD F+ TC+  F++DTAF
Sbjct: 120  NQRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAF 179

Query: 3315 SFKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEES 3136
            SFK  N++  ++C++K+EF VR+IN+I +Y D+SCY+ILLQL SSP ++YRTADDDI + 
Sbjct: 180  SFKDNNKHTFLKCDYKMEFIVRDINQITRYTDTSCYVILLQLTSSPCIWYRTADDDIAKL 239

Query: 3135 VPYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLH 2956
            VPYDLLDDDDPWIRTTDFT SGAIGRCNT+R+S+PPR G  L  A+ +LKE+RV  H + 
Sbjct: 240  VPYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRV--HQVS 297

Query: 2955 LGEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLL 2776
            L     I +EPD+G+ + DHFFCI Y++ ++F++LFLVNAVMHKGIINQHQM ++FFDLL
Sbjct: 298  LNRPPKILNEPDYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLL 357

Query: 2775 RDQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLII 2596
            R+QP EVNLAAL HI++++ P+ +A K+L+LVQ+WL+KNP L+ R ++L DIVE+RRL+I
Sbjct: 358  RNQPNEVNLAALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVI 417

Query: 2595 TPARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTA 2416
            TP++AYC PPEVELSNRVLR Y+DVADRFLRVTFMDEGM+ +N +V  YY APIV+++T+
Sbjct: 418  TPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITS 477

Query: 2415 NSKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINW 2236
            +S  Q+T +F R+K IL  GF+LCGRKYSFLA+SSNQLRD+SAWFFAE K I V  I+ W
Sbjct: 478  SSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAILGW 537

Query: 2235 MGRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLA 2056
            MG+FTN+NVAKCAAR+GQCFSSTYAT+EVP + ++  + D+ERNGYVFSDGIG I+PDLA
Sbjct: 538  MGKFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPDLA 597

Query: 2055 AEVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICS 1876
             EVA++L++  +PPCAYQIR+AG KGV+A WPSKKDG RL LRPSM KFESNHRILEICS
Sbjct: 598  QEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRILEICS 657

Query: 1875 WPRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQG 1696
            W RFQPGFLNRQIITLLS L V D IFW MQE+MI KL++M+ D+DVAF+VLTASCAEQG
Sbjct: 658  WTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQG 717

Query: 1695 NTAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQ 1516
            N AAIML+AGF+P TEPHLRGML  IRAAQL  LRE+ARIFV  GRW MGC DE  VL++
Sbjct: 718  NAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQE 777

Query: 1515 GQCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPE 1336
            GQCFIQVS P  E CFS HGS F+ET+ NL VV G V IAKNPCLHPGDVRIL+AV APE
Sbjct: 778  GQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPE 837

Query: 1335 LQHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKA 1156
            L HLYDCLVFP+ G+RPHT+EASGSDLDGDLYF TWD NLIPPS+KSWPPM+Y+PAE K 
Sbjct: 838  LHHLYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKT 897

Query: 1155 LPREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFP 976
            L R++   DI++FF KNM+ ESLGTICNAHVVHAD S  GALD+ C +L+ELAATAVDFP
Sbjct: 898  LQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVDFP 957

Query: 975  KTGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAAS-ALAFV 799
            KTGK+VT+PP  KPKLYPDFMGKE  Q+++S KILGK+YRR++DA D++    S  L F 
Sbjct: 958  KTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFT 1017

Query: 798  PKDIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYS 619
            P D+ YD DLE+AG+E FI  AW+ KCSYDGQL+GLLGQYKVN EEE+VTGHIWSMPKY 
Sbjct: 1018 PGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYV 1077

Query: 618  SKKQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPA 439
            S+KQG+LKE+LK++Y+ L+KDFR+VFE + P+F+ L+ +E+N LYE+KASAWYQV YHP 
Sbjct: 1078 SRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYHPT 1137

Query: 438  WVKKSLELQVPEGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
            W+KKSLEL+ P+      MLSF WIAAD+LARIKI+C    + +  KPI+SL  Y++DR+
Sbjct: 1138 WLKKSLELREPDAPEAVPMLSFPWIAADYLARIKIKCRRTKSFDPTKPINSLASYLSDRM 1197


>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
            gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
            6 [Cucumis sativus]
          Length = 1197

 Score = 1650 bits (4274), Expect = 0.0
 Identities = 788/1200 (65%), Positives = 978/1200 (81%), Gaps = 2/1200 (0%)
 Frame = -3

Query: 3852 MGSDRSDLNLVVTQISVGGFDSYVTAKMLSEYFEETIGMVLRCRLKTSSTPFDSYPAYEV 3673
            MGS+  +  +VVTQ+S GGFDS V A+ L  Y E  IG+V RCRLKTS TP +SYP +EV
Sbjct: 1    MGSEEGE-KIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEV 59

Query: 3672 -DISSVQRKNDYQKVEPHAFVHFATSVAVQSALDAAGCGELILGNRSLKVSLGPENPHRM 3496
             ++++V + +DY+KV PHAFVHF +  +   AL AAG GELI  ++ LK SLGPE+P  +
Sbjct: 60   SNVANVIKSDDYKKVVPHAFVHFVSPDSAAEALHAAGRGELIFNDKLLKASLGPESPFHI 119

Query: 3495 IERRRTVIPFRLSNVKIEIGVLVSRDTFFVGWKGPPSGVDFLVDHFNDTCRLLFSRDTAF 3316
             +RRRT +PF+LS+V+++IG L   D F V W+GP SG+DFLVD F+ TC+  F++DTAF
Sbjct: 120  NQRRRTKVPFKLSDVQVDIGNLTCHDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAF 179

Query: 3315 SFKGENRYAVIRCNFKVEFRVREINEIKQYQDSSCYIILLQLASSPLVYYRTADDDIEES 3136
            SFK  N++  ++C++K+EF VR+IN+I +Y D+SCY+ILLQL +SP ++YRTADDDI + 
Sbjct: 180  SFKDNNKHTFLKCDYKMEFIVRDINQITRYTDTSCYVILLQLTASPCIWYRTADDDIAKL 239

Query: 3135 VPYDLLDDDDPWIRTTDFTPSGAIGRCNTYRISIPPRNGATLGKALAHLKERRVKTHDLH 2956
            VPYDLLDDDDPWIRTTDFT SGAIGRCNT+R+S+PPR G  L  A+ +LKE+RV  H + 
Sbjct: 240  VPYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRV--HQVS 297

Query: 2955 LGEKLLIKDEPDFGIPLPDHFFCIQYQQGVNFKVLFLVNAVMHKGIINQHQMCNKFFDLL 2776
            L     I +EPD+G+ + DHFFCI Y++ ++F++LFLVNAVMHKGIINQHQM ++FFDLL
Sbjct: 298  LNRPPKILNEPDYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLL 357

Query: 2775 RDQPEEVNLAALKHIYSYKSPIYNAPKRLELVQKWLIKNPKLIDRPRQLDDIVEVRRLII 2596
            R+QP EVNLAAL HI++++ P+ +A K+L+LVQ+WL+KNP L+ R ++L DIVE+RRL+I
Sbjct: 358  RNQPNEVNLAALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVI 417

Query: 2595 TPARAYCIPPEVELSNRVLRNYRDVADRFLRVTFMDEGMQTMNKNVLDYYAAPIVRDVTA 2416
            TP++AYC PPEVELSNRVLR Y+DVADRFLRVTFMDEGM+ +N +V  YY APIV+++T+
Sbjct: 418  TPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITS 477

Query: 2415 NSKLQRTGMFQRVKSILSQGFYLCGRKYSFLAFSSNQLRDRSAWFFAENKKIGVANIINW 2236
            +S  Q+T +F R+K IL  GF+LCGRKYSFLA+SSNQLRD+SAWFFAE K I V  I+ W
Sbjct: 478  SSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAILGW 537

Query: 2235 MGRFTNRNVAKCAARMGQCFSSTYATVEVPTSEIDLAVPDIERNGYVFSDGIGMISPDLA 2056
            MG+FTN+NVAKCAAR+GQCFSSTYAT+EVP + ++  + D+ERNGYVFSDGIG I+PDLA
Sbjct: 538  MGKFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPDLA 597

Query: 2055 AEVAERLQLSKNPPCAYQIRFAGCKGVIACWPSKKDGFRLYLRPSMKKFESNHRILEICS 1876
             EVA++L++  +PPCAYQIR+AG KGV+A WPSKKDG RL LRPSM KFESNHRILEICS
Sbjct: 598  QEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRILEICS 657

Query: 1875 WPRFQPGFLNRQIITLLSALDVQDHIFWEMQESMIYKLNQMLVDSDVAFDVLTASCAEQG 1696
            W RFQPGFLNRQIITLLS L V D IFW MQE+MI KL++M+ D+DVAF+VLTASCAEQG
Sbjct: 658  WTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQG 717

Query: 1695 NTAAIMLTAGFKPETEPHLRGMLTTIRAAQLGDLRERARIFVPSGRWLMGCLDELAVLEQ 1516
            N AAIML+AGF+P TEPHLRGML  IRAAQL  LRE+ARIFV  GRW MGC DE  VL++
Sbjct: 718  NAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQE 777

Query: 1515 GQCFIQVSQPSPENCFSNHGSKFSETRKNLQVVEGYVAIAKNPCLHPGDVRILKAVQAPE 1336
            GQCFIQVS P  E CFS HGS F+ET+ NL VV G V IAKNPCLHPGDVRIL+AV APE
Sbjct: 778  GQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPE 837

Query: 1335 LQHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSRKSWPPMDYSPAETKA 1156
            L HLYDCLVFP+ G+RPHT+EASGSDLDGDLYF TWD NLIPPS+KSWPPM+Y+PAE K 
Sbjct: 838  LHHLYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKT 897

Query: 1155 LPREVKLADIIDFFTKNMVTESLGTICNAHVVHADLSDKGALDDKCTKLAELAATAVDFP 976
            L R++   DI++FF KNM+ ESLGTICNAHVVHAD S  GALD+ C +L+ELAATAVDFP
Sbjct: 898  LQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVDFP 957

Query: 975  KTGKIVTLPPQYKPKLYPDFMGKEEFQTFQSKKILGKLYRRVKDACDEEQAAAS-ALAFV 799
            KTGK+VT+PP  KPKLYPDFMGKE  Q+++S KILGK+YRR++DA D++    S  L F 
Sbjct: 958  KTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFT 1017

Query: 798  PKDIPYDKDLEIAGSEAFIERAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYS 619
            P D+ YD DLE+AG+E FI  AW+ KCSYDGQL+GLLGQYKVN EEE+VTGHIWSMPKY 
Sbjct: 1018 PGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYV 1077

Query: 618  SKKQGDLKERLKNAYNELRKDFRKVFEQMEPDFKLLSDEEKNVLYERKASAWYQVTYHPA 439
            S+KQG+LKE+LK++Y+ L+KDFR+VFE + P+F+ L+ +E+N LYE+KASAWYQV YHP 
Sbjct: 1078 SRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYHPT 1137

Query: 438  WVKKSLELQVPEGFGETVMLSFGWIAADFLARIKIRCNGIGNTNSLKPIDSLRKYVADRI 259
            W+KKSLEL+ P+      MLSF WIAAD+LARIKI+C    + +  KPI+SL  Y++DR+
Sbjct: 1138 WLKKSLELREPDAPEAVPMLSFPWIAADYLARIKIKCRRTKSFDPTKPINSLASYLSDRM 1197