BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00001294
         (3074 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]       677   0.0  
emb|CBI17549.3| unnamed protein product [Vitis vinifera]              623   e-175
ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s...   604   e-170
ref|XP_006355441.1| PREDICTED: DNA-directed RNA polymerase III s...   556   e-155
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s...   555   e-155
ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Popu...   554   e-155
ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   554   e-155
ref|XP_004245771.1| PREDICTED: DNA-directed RNA polymerase III s...   549   e-153
gb|EOX91148.1| SIN-like family protein, putative isoform 1 [Theo...   547   e-153
ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricin...   544   e-152
ref|XP_006355442.1| PREDICTED: DNA-directed RNA polymerase III s...   543   e-151
gb|EXB77882.1| DNA-directed RNA polymerase III subunit RPC5 [Mor...   538   e-150
ref|XP_006425717.1| hypothetical protein CICLE_v10025048mg [Citr...   537   e-149
gb|ABU45193.1| unknown [Petunia integrifolia subsp. inflata]          536   e-149
gb|EOX91150.1| Transcription regulators,zinc ion binding, putati...   529   e-147
gb|EMJ03134.1| hypothetical protein PRUPE_ppa002228mg [Prunus pe...   515   e-143
ref|XP_006590438.1| PREDICTED: DNA-directed RNA polymerase III s...   511   e-141
gb|EOX91149.1| Transcription regulators,zinc ion binding, putati...   500   e-138
ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5...   493   e-136
ref|XP_004232385.1| PREDICTED: uncharacterized protein LOC101252...   482   e-133

>gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]
          Length = 643

 Score =  677 bits (1747), Expect = 0.0
 Identities = 385/705 (54%), Positives = 460/705 (65%), Gaps = 6/705 (0%)
 Frame = -1

Query: 2687 LDLDDMDSPKQGSVRPSRFAPKGSKLKPKTEATVSSATVLKQSKDSDSVPLTKKEEFDPK 2508
            +D DD+D P Q   RPSRFAPKGSK KP+TE   +++             + KKEE D K
Sbjct: 1    MDFDDLDEPSQAPTRPSRFAPKGSKFKPRTEPVAATSN-----------SIAKKEELDSK 49

Query: 2507 PLLP---PTSFAAAKAKDEASGS-NTVVPMDVXXXXXXXXXXXXXXXXXXLNDNGEDEVV 2340
            P+ P    T+ AA KA+D AS S +  V MDV                    + GEDE+V
Sbjct: 50   PVSPINSSTTAAAGKAEDAASASVSQSVAMDVDAKVEEEAEQPKDEPMES-REEGEDEIV 108

Query: 2339 REVDVYFNPSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEVDLAVDVDSK 2160
            RE+DVY  PSID NTKLYV QYPLRPLWRPYEL++RCEEVRVK  SA+VEVDLAVDVDSK
Sbjct: 109  REIDVYLTPSIDPNTKLYVLQYPLRPLWRPYELDDRCEEVRVKCKSAEVEVDLAVDVDSK 168

Query: 2159 NYDRDADPRVIMQKQTLTSSSKPPIATRYAVGVLVGNKLHLNSVDAVVQLRPSLQHLKPE 1980
            NYD DADPRV M KQTLTSS KPP+   YAVGVLVGNKLHLN + AVVQLRPS+QH KPE
Sbjct: 169  NYDSDADPRVSMTKQTLTSSWKPPVTAGYAVGVLVGNKLHLNPIHAVVQLRPSMQHYKPE 228

Query: 1979 GARTKNTATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENWISLKYLGAR 1800
             ++ + TA++NL++  K     EE   GS KKQ KPS    EQNK T E+WI L Y GAR
Sbjct: 229  SSKRRTTASSNLEDNTK----GEEVTTGSLKKQGKPSGPVIEQNKDTREDWIPLNYHGAR 284

Query: 1799 SDASARYLKKMVEQDESPLEFSMSRYDYVNTLCPGKLKDDSGSNYPSKRVLLSYPPEERF 1620
            SD S  Y++KMVE D S ++FSM+ +DYVNTLCPG   +++GSN PS RVLLS P EERF
Sbjct: 285  SDISMSYVRKMVEHDSSHIQFSMN-HDYVNTLCPGTSNENNGSNGPS-RVLLSLPLEERF 342

Query: 1619 RKLLLEGPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL--NAEGMEEL 1446
            R  LL+GPPIHRF AL++ APD SVED L VL + A+LVQGLW+PKSSLL    +G++ L
Sbjct: 343  RTWLLQGPPIHRFDALKHLAPDASVEDILAVLSQHAQLVQGLWIPKSSLLYGKDQGIDAL 402

Query: 1445 ARDYVLLRFSSSPVIHNSQLPPTSDLVTAMRNVLNILAFPRPKLGDWKFKEPPDISFMKL 1266
            ARDYVLL FS +P+I+NSQLP    L  AMR+VL+ +AF R  L DWKFKEPPD++F+KL
Sbjct: 403  ARDYVLLLFSRTPIINNSQLPQQQKLNRAMRDVLDTVAFERVSLNDWKFKEPPDMTFIKL 462

Query: 1265 HPNIVXXXXXXXXXXXKQITNYIFRGRDKLALKNPSKSVTANNSAILKXXXXXXXXXXXX 1086
            +P IV           K IT  IF  +++ A KN S+ +T NN A  K            
Sbjct: 463  NPKIVREQEQTWERLEKLITEKIFGDKNRPATKNSSRPLTTNNPATSKSLSKHASNSLNA 522

Query: 1085 XXXXXXXXNETREALPKVLQKIFQDHKVCSFQQICQRLRELAVSKSYLLKGPSREAVAAA 906
                     ETREALPK LQK+FQ HKVC FQQICQRLRE+AVS+S   KG +REA+AAA
Sbjct: 523  GVPRRPMSEETREALPKALQKLFQSHKVC-FQQICQRLREMAVSESSRPKGFAREAIAAA 581

Query: 905  NGVDAPVEELQAVIGQVAINIHGVYVAKSSSDHPDCDAFRKVVIDLLIAEGPNAKLKKAS 726
            +GV+AP EELQA+I QVAINIHGVYV KSS  HP+ D F                     
Sbjct: 582  HGVEAPPEELQAIISQVAINIHGVYVLKSSPVHPEHDEF--------------------- 620

Query: 725  IVEAAKLQLGKSDIGDAEYQKVLKEICVSTKGSCWVLKSGDGNPR 591
                                 V++E+CVS +GS WVLKSGDGNP+
Sbjct: 621  ---------------------VVQELCVS-QGSAWVLKSGDGNPK 643


>emb|CBI17549.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  623 bits (1607), Expect = e-175
 Identities = 366/710 (51%), Positives = 448/710 (63%), Gaps = 11/710 (1%)
 Frame = -1

Query: 2687 LDLDDMDSPKQGSVR-PSRFAPKGSKLK--PKTEATVSSATVLKQSKDSDSVPLTKKEEF 2517
            +DLDD+D P +  VR PSRFAPK SK K  PK E +       + SK  D   + KKEE 
Sbjct: 1    MDLDDLDGPNRAPVRRPSRFAPKSSKPKLIPKPEPSSQP----EPSKLDDVTLINKKEED 56

Query: 2516 DPKPLLPPTSFAAAKAKDEASGSNT---VVPMDVXXXXXXXXXXXXXXXXXXLNDNGEDE 2346
               PL+        K  DE   S+T   V+ M+V                   +D  ED 
Sbjct: 57   SQPPLV--------KKADEPFASSTQNGVIEMEVEAKAEVEDAMEE-------DDRDEDP 101

Query: 2345 VVREVDVYFNPS-IDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEVDLAVDV 2169
            VVRE+DV+F P   D NTK+YV QYPLRP WRPYEL ERC+EVRVK  SA+VEVDL++DV
Sbjct: 102  VVREIDVFFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDV 161

Query: 2168 DSKNYDRDADPRVIMQKQTLTSSSKPPIATRYAVGVLVGNKLHLNSVDAVVQLRPSLQHL 1989
            DSKNYD DA     M+KQTL++S KPP  T Y VGVL+GNKLHLN + AVVQLRPS+++L
Sbjct: 162  DSKNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYL 221

Query: 1988 KPEGARTKNTATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENWISLKYL 1809
               GA+ KN  T +   AVK E   EE+ +GS KKQNK     +EQN    E+W+ LKY 
Sbjct: 222  SSGGAKRKNNVTGDTNSAVKLEVSNEEESVGSLKKQNKIMGILDEQNTDAAESWVPLKYH 281

Query: 1808 GARSDASARYLKKMVEQDESPLEFSMSRYDYVNTLC-PGKLKDDSGSNYPSKRVLLSYPP 1632
             + SD SARYL+KMV +D SP++F MS Y+YVN+LC PG   DD+ S   S+R LLS P 
Sbjct: 282  SSESDFSARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFLLSMPL 341

Query: 1631 EERFRKLLLEGPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL--NAEG 1458
            EERF+ LL EGPP+HRF+AL++FAPD SVED LGVL K A LVQGLWVPKSSLL    +G
Sbjct: 342  EERFKTLLCEGPPVHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSLLFPGGQG 401

Query: 1457 MEELARDYVLLRFSSSPVIHNSQLPPTSDLVTAMRNVLNILAFPRPKLGDWKFKEPPDIS 1278
            +  LARDY+LL FS  P+I+ SQ+     L  A++  L+ILA  RP   DWKFKEP D+S
Sbjct: 402  VAPLARDYILLLFSKGPLINYSQVDVPGSLNKALKGFLSILAVERPSFRDWKFKEPTDVS 461

Query: 1277 FMKLHPNIVXXXXXXXXXXXKQITNYIF-RGRDKLALKNPSKSVTANNSAILKXXXXXXX 1101
            FMKLHP+IV           KQIT+ I   GR     KN  K   AN +           
Sbjct: 462  FMKLHPDIVREQRRVWESLEKQITDIIHGGGRRGPVTKNSGKPSIANKTGTSTKSDGATR 521

Query: 1100 XXXXXXXXXXXXXNETREALPKVLQKIFQDHKVCSFQQICQRLRELAVSKSYLLKGPSRE 921
                          ETREALPK L+++F+ HKVCSFQ ICQ LR+LAVSKS   K   R 
Sbjct: 522  ATNGTPVRRTAMSAETREALPKALEEVFRLHKVCSFQLICQALRDLAVSKSTSPKVDPRT 581

Query: 920  AVAAANGVDAPVEELQAVIGQVAINIHGVYVAKSSSDHPDCDAFRKVVIDLLIAEGPNAK 741
             VAAA G DAP EEL A+I + A  +HGVYV K +S+H + +  RKVV+DL   + PNAK
Sbjct: 582  FVAAAYGADAPQEELHAIISKYATTVHGVYVWK-TSEHSEHNPLRKVVVDLFCGKEPNAK 640

Query: 740  LKKASIVEAAKLQLGKSDIGDAEYQKVLKEICVSTKGSCWVLKSGDGNPR 591
            LK+A I+EAAK+ L K +I   EY KV+ E+C S +GS WVLKSGDG P+
Sbjct: 641  LKRADIMEAAKIAL-KKEITTHEYNKVVSELCES-RGSLWVLKSGDGKPK 688


>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis
            vinifera]
          Length = 672

 Score =  604 bits (1557), Expect = e-170
 Identities = 360/710 (50%), Positives = 441/710 (62%), Gaps = 11/710 (1%)
 Frame = -1

Query: 2687 LDLDDMDSPKQGSVR-PSRFAPKGSKLK--PKTEATVSSATVLKQSKDSDSVPLTKKEEF 2517
            +DLDD+D P +  VR PSRFAPK SK K  PK E +       + SK  D   + KKEE 
Sbjct: 1    MDLDDLDGPNRAPVRRPSRFAPKSSKPKLIPKPEPSSQP----EPSKLDDVTLINKKEED 56

Query: 2516 DPKPLLPPTSFAAAKAKDEASGSNT---VVPMDVXXXXXXXXXXXXXXXXXXLNDNGEDE 2346
               PL+        K  DE   S+T   V+ M+V                   +D  ED 
Sbjct: 57   SQPPLV--------KKADEPFASSTQNGVIEMEVEAKAEVEDAMEE-------DDRDEDP 101

Query: 2345 VVREVDVYFNPS-IDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEVDLAVDV 2169
            VVRE+DV+F P   D NTK+YV QYPLRP WRPYEL ERC+EVRVK  SA+VEVDL++DV
Sbjct: 102  VVREIDVFFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDV 161

Query: 2168 DSKNYDRDADPRVIMQKQTLTSSSKPPIATRYAVGVLVGNKLHLNSVDAVVQLRPSLQHL 1989
            DSKNYD DA     M+KQTL++S KPP  T Y VGVL+GNKLHLN + AVVQLRPS+++L
Sbjct: 162  DSKNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYL 221

Query: 1988 KPEGARTKNTATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENWISLKYL 1809
               GA+ KN  T +   AVK E   EE+ +GS KKQ                +W+ LKY 
Sbjct: 222  SSGGAKRKNNVTGDTNSAVKLEVSNEEESVGSLKKQ----------------SWVPLKYH 265

Query: 1808 GARSDASARYLKKMVEQDESPLEFSMSRYDYVNTLC-PGKLKDDSGSNYPSKRVLLSYPP 1632
             + SD SARYL+KMV +D SP++F MS Y+YVN+LC PG   DD+ S   S+R LLS P 
Sbjct: 266  SSESDFSARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFLLSMPL 325

Query: 1631 EERFRKLLLEGPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL--NAEG 1458
            EERF+ LL EGPP+HRF+AL++FAPD SVED LGVL K A LVQGLWVPKSSLL    +G
Sbjct: 326  EERFKTLLCEGPPVHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSLLFPGGQG 385

Query: 1457 MEELARDYVLLRFSSSPVIHNSQLPPTSDLVTAMRNVLNILAFPRPKLGDWKFKEPPDIS 1278
            +  LARDY+LL FS  P+I+ SQ+     L  A++  L+ILA  RP   DWKFKEP D+S
Sbjct: 386  VAPLARDYILLLFSKGPLINYSQVDVPGSLNKALKGFLSILAVERPSFRDWKFKEPTDVS 445

Query: 1277 FMKLHPNIVXXXXXXXXXXXKQITNYIF-RGRDKLALKNPSKSVTANNSAILKXXXXXXX 1101
            FMKLHP+IV           KQIT+ I   GR     KN  K   AN +           
Sbjct: 446  FMKLHPDIVREQRRVWESLEKQITDIIHGGGRRGPVTKNSGKPSIANKTGTSTKSDGATR 505

Query: 1100 XXXXXXXXXXXXXNETREALPKVLQKIFQDHKVCSFQQICQRLRELAVSKSYLLKGPSRE 921
                          ETREALPK L+++F+ HKVCSFQ ICQ LR+LAVSKS   K   R 
Sbjct: 506  ATNGTPVRRTAMSAETREALPKALEEVFRLHKVCSFQLICQALRDLAVSKSTSPKVDPRT 565

Query: 920  AVAAANGVDAPVEELQAVIGQVAINIHGVYVAKSSSDHPDCDAFRKVVIDLLIAEGPNAK 741
             VAAA G DAP EEL A+I + A  +HGVYV K +S+H + +  RKVV+DL   + PNAK
Sbjct: 566  FVAAAYGADAPQEELHAIISKYATTVHGVYVWK-TSEHSEHNPLRKVVVDLFCGKEPNAK 624

Query: 740  LKKASIVEAAKLQLGKSDIGDAEYQKVLKEICVSTKGSCWVLKSGDGNPR 591
            LK+A I+EAAK+ L K +I   EY KV+ E+C S +GS WVLKSGDG P+
Sbjct: 625  LKRADIMEAAKIAL-KKEITTHEYNKVVSELCES-RGSLWVLKSGDGKPK 672


>ref|XP_006355441.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like isoform
            X1 [Solanum tuberosum]
          Length = 669

 Score =  556 bits (1432), Expect = e-155
 Identities = 336/699 (48%), Positives = 431/699 (61%), Gaps = 5/699 (0%)
 Frame = -1

Query: 2675 DMDSPKQGSVRPSRFAPKGSKLKPKTEATVSSATVLKQSKDSDSVPLTKKEEFDPKPLLP 2496
            D D P +   R SRFAPK SKLKP+ E      T+      SDS  LTKKEE        
Sbjct: 4    DFDGPSKVPTRQSRFAPKSSKLKPQPETKPKIETL----PHSDSAILTKKEEL------- 52

Query: 2495 PTSFAAAKAKDEASGSNTVVPMDVXXXXXXXXXXXXXXXXXXLNDNGEDEVVREVDVYFN 2316
                + + A++ A   N  VP++                   + D+  DEVVRE+DV  N
Sbjct: 53   ----SVSLAENGAVTGNDDVPLE-----GETTGNYLGEDEGQVTDSDHDEVVREIDVCIN 103

Query: 2315 PSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEVDLAVDVDSKNYDRDADP 2136
            PS D +T+LYVFQYPLR +WRPYELEERC+EVR++  +A++EVDLA+D+DSKN+DRD+  
Sbjct: 104  PSFDPSTQLYVFQYPLRAVWRPYELEERCQEVRLRPSTAEMEVDLAIDLDSKNFDRDSVH 163

Query: 2135 RVIMQKQTLTSS--SKPPIATRYAVGVLVGNKLHLNSVDAVVQLRPSLQHLKPEGARTKN 1962
               ++KQ L++S    P  A+ YAVGVL+G+KLHLN V AVVQLRPS ++LK E    KN
Sbjct: 164  AATIKKQMLSTSWMPLPTCASGYAVGVLIGDKLHLNPVHAVVQLRPSKRNLK-ESELKKN 222

Query: 1961 TATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENWISLKYLGARSDASAR 1782
              TNN +++V+ ED KE++P+G +KKQNKP        K   E+W+ LKY GARSD SAR
Sbjct: 223  VTTNNDEKSVENEDVKEKRPMGPSKKQNKPPGIE----KDIGEHWLHLKYHGARSDISAR 278

Query: 1781 YLKKMVEQDESPLEFSMSRYDYVNTLCPGKLKDDSGSNYPSKRVLLSYPPEERFRKLLLE 1602
            YL+KM  ++ SP+ FSMS  DY+N   PG+  D         R L   P EER R  LLE
Sbjct: 279  YLQKMAMEEGSPVPFSMSPVDYLNAFFPGRPTDTDRLKILRTR-LSQLPLEERVRTWLLE 337

Query: 1601 GPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLLNA--EGMEELARDYVL 1428
            GPPIHRF AL++ APD S ++ + VL+  A+LVQGLWVPKSSL+     G+E LAR++VL
Sbjct: 338  GPPIHRFDALKHLAPDNSADEIIRVLQIYAQLVQGLWVPKSSLVYGTNSGVEVLARNFVL 397

Query: 1427 LRFSSSPVIHNSQLPPTSDLVTAMRNVLNILAFPRPKLGDWKFKEPPDISFMKLHPNIVX 1248
              F+   +I  S      + + A    L  LA  RP L DWK KE PD  F  L+ ++V 
Sbjct: 398  YEFTKGILIKKSVFGRRPEFLKAATPALKSLAVERPDLNDWKLKEHPDKKFENLYGDVVR 457

Query: 1247 XXXXXXXXXXKQITNYIFRGRDKLALKNPSKSVTANNSAILKXXXXXXXXXXXXXXXXXX 1068
                      KQI + +  GR++  +KNP     A+  A+                    
Sbjct: 458  EKQATWECLGKQINDVLPGGRNRPTMKNPLNP-NADIPAL-----PSGDKPTSSSLLRTS 511

Query: 1067 XXNETREALPKVLQKIFQDHKVCSFQQICQRLRELAVSKSYLLKGPSREAVAAANGV-DA 891
               E REALPK LQ++F+ +KVCSFQQI Q LR+L VSKSY  KG  R+A+ A+  V DA
Sbjct: 512  MSEEIREALPKALQEVFRTYKVCSFQQIRQGLRKLGVSKSYPPKGAPRKAITASIDVFDA 571

Query: 890  PVEELQAVIGQVAINIHGVYVAKSSSDHPDCDAFRKVVIDLLIAEGPNAKLKKASIVEAA 711
            P EE+QAVI QVA+NIHGVYV KSS D+P  D  RKVVIDL +AEGP+AKLKKAS+ EAA
Sbjct: 572  PQEEIQAVINQVAVNIHGVYVLKSSPDNPQYDTLRKVVIDLFMAEGPSAKLKKASVTEAA 631

Query: 710  KLQLGKSDIGDAEYQKVLKEICVSTKGSCWVLKSGDGNP 594
            KLQL + DI + E+ KV+KE+C S K S WVL+SGDG P
Sbjct: 632  KLQLNR-DITNVEFLKVMKELCHSEK-SAWVLRSGDGKP 668


>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Cucumis
            sativus]
          Length = 702

 Score =  555 bits (1430), Expect = e-155
 Identities = 328/718 (45%), Positives = 420/718 (58%), Gaps = 19/718 (2%)
 Frame = -1

Query: 2687 LDLDDMDSPKQGSVRPSRFAPKGSKLKPKTEATVSSATVLKQ--SKDSDSVPLTKKEEFD 2514
            +DLD +D   Q   R SRFAPK SK KPK ++ V      +Q  +K     P++K E  +
Sbjct: 1    MDLDGLDEGSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPLTKLEPQPPISKPEVVE 60

Query: 2513 PKPLLPPTSF----AAAKAKDEASGSNTVVPMDVXXXXXXXXXXXXXXXXXXLNDNGEDE 2346
            P   +            K K E+S  N V  MDV                    D  ED 
Sbjct: 61   PDARVEEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDAMVDDDPIE-EDASEDM 119

Query: 2345 VVREVDVYFNPSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEVDLAVDVD 2166
            VVRE+DV F PS+DSN+KLYV QYPLRP WRPYE E RC+EVRVK  + +VEVDL VD++
Sbjct: 120  VVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVDIE 179

Query: 2165 SKNYDRDADPRVIMQKQTLTSSSKPPIATRYAVGVLVGNKLHLNSVDAVVQLRPSLQHLK 1986
            S NYD  AD    M+KQTLTSS +PP+AT YAVG+L+GNKLHLN V AVVQLRPS +HL 
Sbjct: 180  SNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLN 239

Query: 1985 PEGARTKNTATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENWISLKYLG 1806
              G + KN         VK E+  +    G+++KQ K +  S E     EE WI LKY G
Sbjct: 240  SGGPKRKNNV--RADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYG 297

Query: 1805 ARSDASARYLKKMVEQDESPLEFSMSRYDYVNTLCPGKLKDDSGSNYPSKRVLLSYPPEE 1626
              SD S R+L+ MV Q  SP++FSMS +DY+++LCPG     +    PSK+ LLS   EE
Sbjct: 298  LESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEE 357

Query: 1625 RFRKLLLEGPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKS-SLLNAEGMEE 1449
            R +KLL EGPP+ RF+AL+++APD   E+ +  L++ A+LVQGLWVPKS  L+  +G   
Sbjct: 358  RIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGR 417

Query: 1448 LARDYVLLRFSSSPVIHNSQLPPTSDLVTAMRNVLNILAFPRPKLGDWKFKEPPDISFMK 1269
             ARD+VL  FS +PV+ +SQ+     L   +++ LN+    RP   DWKFKE  D  F+ 
Sbjct: 418  CARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLS 477

Query: 1268 LHPNIVXXXXXXXXXXXKQITNYIFRGRDKLALKNPSKSVTANNSAI------------L 1125
             H  I            +++ N + +G          KSV   N+A             +
Sbjct: 478  NHVRIA--------EKQEELWNNVEKG---FTFLRSIKSVHHANAATGKPGVVPKLEKQV 526

Query: 1124 KXXXXXXXXXXXXXXXXXXXXNETREALPKVLQKIFQDHKVCSFQQICQRLRELAVSKSY 945
                                 +ETREALPK LQK+FQ+HKVCSFQ ICQ LR+LAVS+S 
Sbjct: 527  SSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQST 586

Query: 944  LLKGPSREAVAAANGVDAPVEELQAVIGQVAINIHGVYVAKSSSDHPDCDAFRKVVIDLL 765
            L K  +R AVAAA GVDAP +EL+ +I QVA  IHG+YV  SS +HP+ D  RKVVI LL
Sbjct: 587  LPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLL 646

Query: 764  IAEGPNAKLKKASIVEAAKLQLGKSDIGDAEYQKVLKEICVSTKGSCWVLKSGDGNPR 591
               GP A LKKA ++EA+K +LG++ I   EY KV+ EIC+S  GS W LKSGDGN R
Sbjct: 647  RGRGPKAVLKKADVLEASKHELGRA-INSNEYSKVMNEICIS-HGSSWTLKSGDGNSR 702


>ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Populus trichocarpa]
            gi|550334731|gb|EEE90658.2| hypothetical protein
            POPTR_0007s12540g [Populus trichocarpa]
          Length = 667

 Score =  554 bits (1428), Expect = e-155
 Identities = 335/715 (46%), Positives = 437/715 (61%), Gaps = 17/715 (2%)
 Frame = -1

Query: 2687 LDLDDMDSPKQGSVRPSRFAPKGSKLKPKTEATVSSATVLKQSKDSDSVPLTKKEE---- 2520
            +DLD +D P +    PSRFAP   K +PK++          + +  +SVP+  K +    
Sbjct: 1    MDLDGLDEPSKVRKPPSRFAPTSKKPQPKSKPK-------PKPEPQESVPVGPKPDPSVS 53

Query: 2519 ---FDPKPLLPPTSFAAAKAKDEASGSNTVVPMDVXXXXXXXXXXXXXXXXXXLNDNGED 2349
                D KP +  T      +K E   SN  V M++                    +  ED
Sbjct: 54   NTAEDAKPKIDDTL-----SKTETGVSNGNVKMEIDAKEERGAAVKENDLMDVDKEEDED 108

Query: 2348 EVV-REVDVYFNPSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEVDLAVD 2172
            +VV RE+DVY+ PS+D NT+LYV QYPLRP WRPYEL+ERC+EVRVK  S +VEVDL++D
Sbjct: 109  DVVVREIDVYYTPSVDPNTQLYVMQYPLRPCWRPYELDERCKEVRVKPESTEVEVDLSID 168

Query: 2171 VDSKNYDRDADPRVIMQKQTLTSSSKPPIATRYAVGVLVGNKLHLNSVDAVVQLRPSLQH 1992
             D+KNYD D   R+ M+KQTL+SS  PP AT YAVGVL+GNKLHLN + AVVQLRPS+ +
Sbjct: 169  -DTKNYDPDIASRLNMKKQTLSSSWSPPPATGYAVGVLIGNKLHLNPIHAVVQLRPSMDY 227

Query: 1991 LKPEGARTKNTATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENWISLKY 1812
            L    ++ K  AT+        ED  E KP+G  KKQ+K  S+ NEQ    EE+WI LKY
Sbjct: 228  LSSGNSKGKKNATSG-------EDSNEGKPLGLPKKQSKQMSSGNEQKPDVEESWIPLKY 280

Query: 1811 LGARSDASARYLKKMVEQDESPLEFSMSRYDYVNTLCPGKLKDDSGSNYPSKRVLLSYPP 1632
             G++SD S+RYL+ MV  + S +EF+M+ YDY+++LCPG   ++   N PS+RVLLS P 
Sbjct: 281  HGSKSDLSSRYLQNMVAPESSTIEFAMNPYDYMSSLCPGISNNNIKLNGPSRRVLLSLPL 340

Query: 1631 EERFRKLLLEGPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL-----N 1467
            EER ++L LEGPPIHRFAALR+  P+ S+ED L VL++  +LVQGLWVPK+SLL      
Sbjct: 341  EERIKRLFLEGPPIHRFAALRHLIPNDSIEDLLIVLQEYGQLVQGLWVPKTSLLFPNPKP 400

Query: 1466 AEGMEELARDYVLLRFSSSPVIHNSQL-PPTSDLVTAMRNVLNILAFPRPKLGDWKFKEP 1290
             E ++  ARDY+LL FS S V+  S+L  P   L+  +++ LNI A  RP   DWKFKE 
Sbjct: 401  TEKVKLAARDYILLLFSKSLVVTPSELNVPMKPLI--LKSFLNIFAVERPSFKDWKFKEN 458

Query: 1289 PDISFMKLHPNIVXXXXXXXXXXXKQITNYIFRGRDKLALKNPSKSVTANNSAILKXXXX 1110
             D  F++L+P+IV           K I+    R     A K+ SK+V       +     
Sbjct: 459  VDTLFVELYPDIVRKQEQAWEVMGKNISAAFDR-----AGKSVSKNVITKPKKTM----- 508

Query: 1109 XXXXXXXXXXXXXXXXNETREALPKVLQKIFQDHKVC--SFQQICQRLRELAVSKSYLLK 936
                            +ETREAL K L K+ Q HKVC   FQ ICQ LR+LA+S+S L K
Sbjct: 509  ---------------TDETREALRKALPKVLQTHKVCRYGFQMICQGLRQLAISQSTLPK 553

Query: 935  GPSREAVAAANGVDAPVEELQAVIGQVAINIHGVYVAKSSSDHPDCDAF-RKVVIDLLIA 759
               R AVAAA+G +AP EELQ VI +VA NIHG YV KSS +HPD D   RKVVI L +A
Sbjct: 554  ADPRIAVAAASGAEAPPEELQEVISEVATNIHGFYVLKSSPEHPDFDPLSRKVVIGLFLA 613

Query: 758  EGPNAKLKKASIVEAAKLQLGKSDIGDAEYQKVLKEICVSTKGSCWVLKSGDGNP 594
             GPNA +KK+ +  AA+L+L K +  ++EY KV+ ++C S KGS WVLKSGDG P
Sbjct: 614  RGPNANIKKSEVQAAARLEL-KREPSNSEYIKVMTDLCES-KGSAWVLKSGDGKP 666


>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC5-like [Cucumis sativus]
          Length = 702

 Score =  554 bits (1428), Expect = e-155
 Identities = 328/718 (45%), Positives = 419/718 (58%), Gaps = 19/718 (2%)
 Frame = -1

Query: 2687 LDLDDMDSPKQGSVRPSRFAPKGSKLKPKTEATVSSATVLKQ--SKDSDSVPLTKKEEFD 2514
            +DLD +D   Q   R SRFAPK SK KPK ++ V      +Q  +K     P++K E  +
Sbjct: 1    MDLDGLDEGSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPLTKLEPQPPISKPEVVE 60

Query: 2513 PKPLLPPTSF----AAAKAKDEASGSNTVVPMDVXXXXXXXXXXXXXXXXXXLNDNGEDE 2346
            P   +            K K E+S  N V  MDV                    D  ED 
Sbjct: 61   PDARVEEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDAMVDDDPIE-EDASEDM 119

Query: 2345 VVREVDVYFNPSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEVDLAVDVD 2166
            VVRE+DV F PS+DSN+KLYV QYPLRP WRPYE E RC+EVRVK  + +VEVDL VD++
Sbjct: 120  VVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVDIE 179

Query: 2165 SKNYDRDADPRVIMQKQTLTSSSKPPIATRYAVGVLVGNKLHLNSVDAVVQLRPSLQHLK 1986
            S NYD  AD    M+KQTLTSS +PP+AT YAVG+L+GNKLHLN V AVVQLRPS +HL 
Sbjct: 180  SNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLN 239

Query: 1985 PEGARTKNTATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENWISLKYLG 1806
              G + KN         VK E+  +    G+++KQ K +  S E     EE WI LKY G
Sbjct: 240  SGGPKRKNNV--RADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYG 297

Query: 1805 ARSDASARYLKKMVEQDESPLEFSMSRYDYVNTLCPGKLKDDSGSNYPSKRVLLSYPPEE 1626
              SD S R+L+ MV Q  SP++FSMS +DY+++LCPG     +    PSK+ LLS   EE
Sbjct: 298  LESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEE 357

Query: 1625 RFRKLLLEGPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKS-SLLNAEGMEE 1449
            R +KLL EGPP+ RF+AL+++APD   E+ +  L++ A+LVQGLWVPKS  L+  +G   
Sbjct: 358  RIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGR 417

Query: 1448 LARDYVLLRFSSSPVIHNSQLPPTSDLVTAMRNVLNILAFPRPKLGDWKFKEPPDISFMK 1269
             ARD+VL  FS +PV+ +SQ+     L   +++ LN+    RP   DWKFKE  D  F+ 
Sbjct: 418  CARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLS 477

Query: 1268 LHPNIVXXXXXXXXXXXKQITNYIFRGRDKLALKNPSKSVTANNSAI------------L 1125
             H  I            +++ N + +G          KSV   N+A             +
Sbjct: 478  NHVRIA--------EKQEELWNNVEKG---FTFLRSIKSVHHANAATGKPGVVPKLEKQV 526

Query: 1124 KXXXXXXXXXXXXXXXXXXXXNETREALPKVLQKIFQDHKVCSFQQICQRLRELAVSKSY 945
                                 +ETREALPK LQK+FQ+HKVCSFQ ICQ LR+LAVS+S 
Sbjct: 527  SSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQST 586

Query: 944  LLKGPSREAVAAANGVDAPVEELQAVIGQVAINIHGVYVAKSSSDHPDCDAFRKVVIDLL 765
            L K  +R AVAAA GVDAP +EL  +I QVA  IHG+YV  SS +HP+ D  RKVVI LL
Sbjct: 587  LPKADARMAVAAAYGVDAPPDELXKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLL 646

Query: 764  IAEGPNAKLKKASIVEAAKLQLGKSDIGDAEYQKVLKEICVSTKGSCWVLKSGDGNPR 591
               GP A LKKA ++EA+K +LG++ I   EY KV+ EIC+S  GS W LKSGDGN R
Sbjct: 647  RGRGPKAVLKKADVLEASKHELGRA-INSNEYSKVMNEICIS-HGSSWTLKSGDGNSR 702


>ref|XP_004245771.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Solanum
            lycopersicum]
          Length = 669

 Score =  549 bits (1415), Expect = e-153
 Identities = 334/702 (47%), Positives = 430/702 (61%), Gaps = 8/702 (1%)
 Frame = -1

Query: 2675 DMDSPKQGSVRPSRFAPKGSKLKPKTEATVSSATVLKQSKDSDSVPLTKKEEFDPKPLLP 2496
            D D P +   R SRFAPK SKLKP+ E      T+      SDS   TKKEE        
Sbjct: 4    DFDGPSKVPTRQSRFAPKSSKLKPQPETKPKIETL----PQSDSAISTKKEEL------- 52

Query: 2495 PTSFAAAKAKDEASGSNTVVPMDVXXXXXXXXXXXXXXXXXXLNDNGEDEVVREVDVYFN 2316
                    A++ A   N  VP++                   + D+  DE+VRE+DV  N
Sbjct: 53   ----TVHLAENRAVTGNDDVPLE-----GETTGNDLGEDEEQVTDSDHDEIVREIDVCIN 103

Query: 2315 PSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEVDLAVDVDSKNYDRDADP 2136
            PS D +T+LYVFQYPL+ +WRPYELEERC+EVR++  +A++EVDLA+D+DSKN+DRD+  
Sbjct: 104  PSFDPSTQLYVFQYPLKAVWRPYELEERCQEVRLRPSTAEMEVDLAIDLDSKNFDRDSVH 163

Query: 2135 RVIMQKQTLTSS--SKPPIATRYAVGVLVGNKLHLNSVDAVVQLRPSLQHLKPEGARTKN 1962
               ++KQ L++S    P   + YAVGVL+G+KLHLN V AVVQLRPS ++LK E    KN
Sbjct: 164  AATVKKQMLSTSWIPLPTCTSGYAVGVLIGDKLHLNPVHAVVQLRPSKRNLK-ESELKKN 222

Query: 1961 TATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENWISLKYLGARSDASAR 1782
              TNN +++V+ ED KE++P+G +KKQNK  S   E++ G  E+W+ LKY GARSD SAR
Sbjct: 223  IITNNDEKSVENEDVKEKRPVGPSKKQNK--SPGIEKDIG--EHWLHLKYHGARSDISAR 278

Query: 1781 YLKKMVEQDESPLEFSMSRYDYVNTLCPGKLKDDSGSNYPSKRVLLSYPPEERFRKLLLE 1602
            YL+KM  ++ SP+ FSMS  DY+N  CPG+  D         R L   P EER R  LLE
Sbjct: 279  YLQKMSMEEGSPVPFSMSPVDYLNAFCPGRPTDTDRLKILRTR-LSQLPLEERVRIWLLE 337

Query: 1601 GPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL--NAEGMEELARDYVL 1428
            GPPIHRF AL + APD S ++ + VL+  A+LVQGLWVPKSSL+     G+E LAR++VL
Sbjct: 338  GPPIHRFDALMHLAPDNSADEIIRVLQIYAQLVQGLWVPKSSLVYGTNSGVEVLARNFVL 397

Query: 1427 LRFSSSPVIHNSQLPPTSDLVTAMRNVLNILAFPRPKLGDWKFKEPPDISFMKLHPNIVX 1248
              F+   +I  S      + + A    L  LA  RP L DWK KE PD  F  L+ ++V 
Sbjct: 398  YEFTKGILIKKSVFGRRPEFLKAATPALKSLAVERPDLNDWKLKEHPDKKFENLYGDVVR 457

Query: 1247 XXXXXXXXXXKQITNYIFRGRDKLALKNP---SKSVTANNSAILKXXXXXXXXXXXXXXX 1077
                      KQI + +  GR +  +KNP   +  +TA  S                   
Sbjct: 458  EQQATWECLGKQINDVLPGGRTRPTMKNPINRNADITALPSG---------DKPTSSSLL 508

Query: 1076 XXXXXNETREALPKVLQKIFQDHKVCSFQQICQRLRELAVSKSYLLKGPSREAVAAANGV 897
                  E REALPK LQ++F+ +KVCSFQQI Q LR+L VSKSY  KG  R+A+ A+  V
Sbjct: 509  RTSMSEEIREALPKALQEVFRTYKVCSFQQIRQGLRKLGVSKSYPPKGAPRKAITASVDV 568

Query: 896  -DAPVEELQAVIGQVAINIHGVYVAKSSSDHPDCDAFRKVVIDLLIAEGPNAKLKKASIV 720
             DAP EE+QAVI QVA+NIHGVYV KSS D+P  D  RK+VIDL +AEGP+AKLKKAS+ 
Sbjct: 569  FDAPQEEIQAVINQVAVNIHGVYVLKSSPDNPQYDTLRKIVIDLFMAEGPSAKLKKASVT 628

Query: 719  EAAKLQLGKSDIGDAEYQKVLKEICVSTKGSCWVLKSGDGNP 594
            EAAKLQL + DI + E+ KV+KE+C S K S WVL+SGDG P
Sbjct: 629  EAAKLQLNR-DITNVEFLKVMKELCHSEK-SAWVLRSGDGKP 668


>gb|EOX91148.1| SIN-like family protein, putative isoform 1 [Theobroma cacao]
          Length = 700

 Score =  547 bits (1410), Expect = e-153
 Identities = 325/714 (45%), Positives = 426/714 (59%), Gaps = 17/714 (2%)
 Frame = -1

Query: 2684 DLDDMDSPKQGSVRPSRFAPKGSKLKPKTEATVSSATVLKQSKDSDSVPLTKKEEFDPKP 2505
            DL ++D P Q + R ++FAPK SK  P+ +        LK    S   PL    + +P P
Sbjct: 5    DLGELDGPSQVNTRTTKFAPKSSKFAPRLKPNFK----LKPEPSSKQEPLNSGPKPEPPP 60

Query: 2504 LLPPTSFAA--------------AKAKDEASGSNTVVPMDVXXXXXXXXXXXXXXXXXXL 2367
              PP S +               A+ K E S SN  V M++                   
Sbjct: 61   P-PPESISRKKENEEEDIKPPVIAETKTEQSFSNGAVKMEIEEEAKEDVIMNEG------ 113

Query: 2366 NDNGEDEVVREVDVYFNPSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEV 2187
            N   ED VVRE+DV+F PSID+NT+LYV QYPLRP WRPYEL+ERCEEVRVK  S +VE+
Sbjct: 114  NREEEDMVVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEM 173

Query: 2186 DLAVDVDSKNYDRDADPRVIMQKQTLTSSSKPPIATRYAVGVLVGNKLHLNSVDAVVQLR 2007
            DLAVDVDS NYD +   R+ M KQTL+SS  PP  T YAVGVL+G+KLHLN + AVVQLR
Sbjct: 174  DLAVDVDSNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLR 233

Query: 2006 PSLQHLKPEGARTKNTATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENW 1827
            PS+ HLKP  ++ KN A  + +  VK E+  + K  GS+ KQNK   +S EQ    +E W
Sbjct: 234  PSMCHLKPSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDKECW 293

Query: 1826 ISLKYLGARSDASARYLKKMVEQDESPLEFSMSRYDYVNTLCPGKLKDDSGSNYPSKRVL 1647
            + LKY  +++D SA+YL++M+ ++   ++F+MS YDYV++LCPG   ++     PS+R+L
Sbjct: 294  VPLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPGASNNNKAQG-PSRRLL 352

Query: 1646 LSYPPEERFRKLLLEGPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLLN 1467
            LS P EER +KLL EGPP HRF+AL++FAPD S+ED   VL+K A LVQGLWVPKSSLL 
Sbjct: 353  LSIPLEERLKKLLSEGPPFHRFSALKHFAPDASIEDIFEVLQKHALLVQGLWVPKSSLLF 412

Query: 1466 AEG-MEELARDYVLLRFSSSPVIHNSQLPPTS-DLVTAMRNVLNILAFPRPKLGDWKFKE 1293
             E   + LARDYVLL FS +P+I  +Q+   S      ++  L ILA  RP   DWK KE
Sbjct: 413  PEDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRKEEVKGFLKILAIERPSFKDWKLKE 472

Query: 1292 PPDISFMKLHPNIVXXXXXXXXXXXKQITNYIFRGRDKLALKNPSKSVTANNSAILKXXX 1113
              D  F KL+P+IV             + N+I RG      +    +V     A+     
Sbjct: 473  NADEGFKKLYPDIVKNQEQIWRAGEDNVINHICRGAKGGPSRTKPGTVIKPEKAM--NSD 530

Query: 1112 XXXXXXXXXXXXXXXXXNETREALPKVLQKIFQDHKVCSFQQICQRLRELAVSKSYLLKG 933
                             +ETREA+PK L+K+FQ HKVCS Q I + LR+LA+S+S L K 
Sbjct: 531  KGVRRVAPAVQAGRTMSDETREAIPKALKKVFQTHKVCSLQLIRKGLRDLALSQSTLPKA 590

Query: 932  PSREAVAAANGVDAPVEELQAVIGQVAINIH-GVYVAKSSSDHPDCDAFRKVVIDLLIAE 756
             +R  V AA G DAP  ELQ V+ +VA+ +H G++V +SS +HP+ D  R+VVI+LL  +
Sbjct: 591  DARMVVKAAYGADAPEHELQEVVSEVAVELHGGLFVLRSSPEHPEYDPLREVVINLLRVK 650

Query: 755  GPNAKLKKASIVEAAKLQLGKSDIGDAEYQKVLKEICVSTKGSCWVLKSGDGNP 594
            G   KLKKA +  AA L L K +I + EY KV+ + C   K S WVLKSGDG P
Sbjct: 651  G---KLKKADVSAAALLSL-KREISNNEYNKVMSDFC-EYKSSWWVLKSGDGKP 699


>ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223535571|gb|EEF37239.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 677

 Score =  544 bits (1402), Expect = e-152
 Identities = 322/684 (47%), Positives = 418/684 (61%), Gaps = 10/684 (1%)
 Frame = -1

Query: 2681 LDDMDSPKQGSVRPSRFAPKGSKLKP--KTEATVSSATVLKQS----KDSDSVPLTKKEE 2520
            LDD+D P Q   RPS++APK +K KP  KT+        L  S    ++  + PL+KK E
Sbjct: 4    LDDLDKPSQVPSRPSKYAPKSAKFKPQPKTKPNPKPDPQLPSSNSELQEPQNAPLSKKNE 63

Query: 2519 FDPKPLLPPTSFAAAKAKDEASGSNTVVPMDVXXXXXXXXXXXXXXXXXXLNDNGEDEVV 2340
             D +  + P   +  K +   S +N  V M++                    +  ED +V
Sbjct: 64   DDEEEEIKPKIISTPKNEAWLS-NNGAVKMEIDDSMDEDKREEGENE----EEEEEDMIV 118

Query: 2339 REVDVYFNPSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEVDLAVDVDSK 2160
            RE+DV+F PSIDS T+LYV QYPLRP WRPYEL+ERCEEVRVK  S +VEVDL +D DS 
Sbjct: 119  REIDVFFTPSIDSATQLYVMQYPLRPCWRPYELDERCEEVRVKPQSTEVEVDLTID-DSS 177

Query: 2159 NYDRDADPRVIMQKQTLTSSSKPPIATRYAVGVLVGNKLHLNSVDAVVQLRPSLQHLKPE 1980
            N+D     +   +KQTL++S  PP  T YAVGVL+GNKLHLN + AVVQLRPSL+H+   
Sbjct: 178  NWDPAQASKYNFKKQTLSTSFMPPRVTGYAVGVLIGNKLHLNPIHAVVQLRPSLEHVNSN 237

Query: 1979 GARTKNTATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENWISLKYLGAR 1800
             ++ KN+AT  L   VK ED  E KPIGS+KKQ                 WISLKY G++
Sbjct: 238  DSKRKNSAT--LNPEVKLEDSNEGKPIGSSKKQC----------------WISLKYHGSK 279

Query: 1799 SDASARYLKKMVEQDESPLEFSMSRYDYVNTLCPGKLKDDSGSNYPSKRVLLSYPPEERF 1620
            SD S+RYL+KM+ Q+ SP+EF+M+ YDY+++LCP    + + S  P +R LLS P  ER 
Sbjct: 280  SDFSSRYLEKMIAQESSPMEFTMTPYDYMSSLCPVASNEKTKSKGPPRRFLLSLPLAERL 339

Query: 1619 RKLLLEGPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLLNAEGMEELA- 1443
            +KL+LEGPP+ RF+ L++FAPD SVED L VL++  +LVQGLW PKSSLL  +   +   
Sbjct: 340  KKLILEGPPVQRFSVLKHFAPDDSVEDVLKVLQEYGQLVQGLWAPKSSLLFPDANSKQGI 399

Query: 1442 RDYVLLRFSSSPVIHNSQLPPTSDLVTAMRNVLNILAFPRPKLGDWKFKEPPDISFMKLH 1263
            RDYVLL FS + VI++SQ+     +   +++ LN+ A  RP   DWKFKE  D +F+KL+
Sbjct: 400  RDYVLLLFSKNLVINSSQVNFPVKIKEEIKSFLNLFAVERPSFKDWKFKEHTDTTFIKLY 459

Query: 1262 PNIVXXXXXXXXXXXKQITNYIFRGRDKLALKN--PSKSVTANNSAIL-KXXXXXXXXXX 1092
            P+IV           K+++  +F    K ++KN  P   +  N    L            
Sbjct: 460  PDIVKKQEEAWDNTEKRLSK-VFDRSGKASMKNAIPKPPMVHNTVKHLDSEKSMPKIASG 518

Query: 1091 XXXXXXXXXXNETREALPKVLQKIFQDHKVCSFQQICQRLRELAVSKSYLLKGPSREAVA 912
                       ETREAL K L K+FQ HKVCSFQ ICQ LR+LAVS+S L K   R AVA
Sbjct: 519  MRRLTKTTITVETREALLKALPKVFQSHKVCSFQLICQGLRDLAVSQSTLPKADPRIAVA 578

Query: 911  AANGVDAPVEELQAVIGQVAINIHGVYVAKSSSDHPDCDAFRKVVIDLLIAEGPNAKLKK 732
            AA+G DAP EELQ +I QVA NIHG YV KSS +HP  D  RKV+IDLL+A GPNAKLKK
Sbjct: 579  AASGADAPPEELQEIISQVATNIHGFYVLKSSPEHPQYDELRKVIIDLLLARGPNAKLKK 638

Query: 731  ASIVEAAKLQLGKSDIGDAEYQKV 660
            A + EAA+L   K D+ + EY K+
Sbjct: 639  AEVFEAARLAF-KRDVTNIEYNKL 661


>ref|XP_006355442.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like isoform
            X2 [Solanum tuberosum]
          Length = 657

 Score =  543 bits (1398), Expect = e-151
 Identities = 331/699 (47%), Positives = 426/699 (60%), Gaps = 5/699 (0%)
 Frame = -1

Query: 2675 DMDSPKQGSVRPSRFAPKGSKLKPKTEATVSSATVLKQSKDSDSVPLTKKEEFDPKPLLP 2496
            D D P +   R SRFAPK SKLKP+ E      T+      SDS  LTKKEE        
Sbjct: 4    DFDGPSKVPTRQSRFAPKSSKLKPQPETKPKIETL----PHSDSAILTKKEEL------- 52

Query: 2495 PTSFAAAKAKDEASGSNTVVPMDVXXXXXXXXXXXXXXXXXXLNDNGEDEVVREVDVYFN 2316
                + + A++ A   N  VP++                   + D+  DEVVRE+DV  N
Sbjct: 53   ----SVSLAENGAVTGNDDVPLE-----GETTGNYLGEDEGQVTDSDHDEVVREIDVCIN 103

Query: 2315 PSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEVDLAVDVDSKNYDRDADP 2136
            PS D +T+LYVFQYPLR +WRPYELEERC+EVR++  +A++EVDLA+D+DSKN+DRD+  
Sbjct: 104  PSFDPSTQLYVFQYPLRAVWRPYELEERCQEVRLRPSTAEMEVDLAIDLDSKNFDRDSVH 163

Query: 2135 RVIMQKQTLTSS--SKPPIATRYAVGVLVGNKLHLNSVDAVVQLRPSLQHLKPEGARTKN 1962
               ++KQ L++S    P  A+ YAVGVL+G+KLHLN V AVVQLRPS ++LK E    KN
Sbjct: 164  AATIKKQMLSTSWMPLPTCASGYAVGVLIGDKLHLNPVHAVVQLRPSKRNLK-ESELKKN 222

Query: 1961 TATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENWISLKYLGARSDASAR 1782
              TNN +++V+ ED KE++P+G +KKQ+                W+ LKY GARSD SAR
Sbjct: 223  VTTNNDEKSVENEDVKEKRPMGPSKKQH----------------WLHLKYHGARSDISAR 266

Query: 1781 YLKKMVEQDESPLEFSMSRYDYVNTLCPGKLKDDSGSNYPSKRVLLSYPPEERFRKLLLE 1602
            YL+KM  ++ SP+ FSMS  DY+N   PG+  D         R L   P EER R  LLE
Sbjct: 267  YLQKMAMEEGSPVPFSMSPVDYLNAFFPGRPTDTDRLKILRTR-LSQLPLEERVRTWLLE 325

Query: 1601 GPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLLNA--EGMEELARDYVL 1428
            GPPIHRF AL++ APD S ++ + VL+  A+LVQGLWVPKSSL+     G+E LAR++VL
Sbjct: 326  GPPIHRFDALKHLAPDNSADEIIRVLQIYAQLVQGLWVPKSSLVYGTNSGVEVLARNFVL 385

Query: 1427 LRFSSSPVIHNSQLPPTSDLVTAMRNVLNILAFPRPKLGDWKFKEPPDISFMKLHPNIVX 1248
              F+   +I  S      + + A    L  LA  RP L DWK KE PD  F  L+ ++V 
Sbjct: 386  YEFTKGILIKKSVFGRRPEFLKAATPALKSLAVERPDLNDWKLKEHPDKKFENLYGDVVR 445

Query: 1247 XXXXXXXXXXKQITNYIFRGRDKLALKNPSKSVTANNSAILKXXXXXXXXXXXXXXXXXX 1068
                      KQI + +  GR++  +KNP     A+  A+                    
Sbjct: 446  EKQATWECLGKQINDVLPGGRNRPTMKNPLNP-NADIPAL-----PSGDKPTSSSLLRTS 499

Query: 1067 XXNETREALPKVLQKIFQDHKVCSFQQICQRLRELAVSKSYLLKGPSREAVAAANGV-DA 891
               E REALPK LQ++F+ +KVCSFQQI Q LR+L VSKSY  KG  R+A+ A+  V DA
Sbjct: 500  MSEEIREALPKALQEVFRTYKVCSFQQIRQGLRKLGVSKSYPPKGAPRKAITASIDVFDA 559

Query: 890  PVEELQAVIGQVAINIHGVYVAKSSSDHPDCDAFRKVVIDLLIAEGPNAKLKKASIVEAA 711
            P EE+QAVI QVA+NIHGVYV KSS D+P  D  RKVVIDL +AEGP+AKLKKAS+ EAA
Sbjct: 560  PQEEIQAVINQVAVNIHGVYVLKSSPDNPQYDTLRKVVIDLFMAEGPSAKLKKASVTEAA 619

Query: 710  KLQLGKSDIGDAEYQKVLKEICVSTKGSCWVLKSGDGNP 594
            KLQL + DI + E+ KV+KE+C S K S WVL+SGDG P
Sbjct: 620  KLQLNR-DITNVEFLKVMKELCHSEK-SAWVLRSGDGKP 656


>gb|EXB77882.1| DNA-directed RNA polymerase III subunit RPC5 [Morus notabilis]
          Length = 732

 Score =  538 bits (1387), Expect = e-150
 Identities = 323/687 (47%), Positives = 414/687 (60%), Gaps = 12/687 (1%)
 Frame = -1

Query: 2687 LDLDDMDSPKQGSVRPSRFAPKGSKLKPKTEATVSSATVLKQSKDSDSVPLTKKEEFDPK 2508
            +DLDD+D+P Q   R SRFAPK SKLKPK+++ ++SA    Q      +P T+  +  PK
Sbjct: 1    MDLDDLDAPSQVPSRVSRFAPKFSKLKPKSKSELASA----QESLGSVLPKTETGQTAPK 56

Query: 2507 PLLPPTSFAAAKAKD---EASGSNTVVPMDVXXXXXXXXXXXXXXXXXXLNDNGEDEVVR 2337
            P   P  F A K K+   +    N  V M+V                    +  ED VVR
Sbjct: 57   P--EPQEFEAKKEKEIDAKPKPENGFVKMEVDSAAGAKEEPEENDSMEVEAE--EDMVVR 112

Query: 2336 EVDVYFNPSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEVDLAVDVDSKN 2157
            E+DV+FNP ID  T+LYV QYPLRP WRPYEL+ERCEEVRVK  S++VE+DL++DVDSKN
Sbjct: 113  EIDVFFNPKIDEGTQLYVLQYPLRPSWRPYELDERCEEVRVKPASSEVEMDLSLDVDSKN 172

Query: 2156 YDRDADPRVIMQKQTLTSSSKPPIATRYAVGVLVGNKLHLNSVDAVVQLRPSLQHLKPEG 1977
            YD D   R+ M KQTL  S   P ATRYAVGVL+GNKLHLN + AV+QLRPSL+HL   G
Sbjct: 173  YDPDCGDRLNMTKQTLCCSWDQPRATRYAVGVLMGNKLHLNRIHAVMQLRPSLKHLISAG 232

Query: 1976 ARTKNTATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENWISLKYLGARS 1797
            ++ KN    + ++ VK E+   +K IGS+KKQ K  ++S +Q    EE W+ LKY G+ S
Sbjct: 233  SKKKNNVKVDAEDTVKLEESSGKKAIGSSKKQIKQENSSVKQKIADEEGWVPLKYHGSES 292

Query: 1796 DASARYLKKMVEQDESPLEFSMSRYDYVNTLCPGKLKDDSGSNYPSKRVLLSYPPEERFR 1617
            ++S RYL+KM  Q+ SPL+F+MS YDY+N+LCPG  K+ +    PS+R LLS P EER +
Sbjct: 293  ESSVRYLRKMAVQESSPLQFTMSPYDYLNSLCPGSCKNGNEPKGPSRRALLSLPLEERIK 352

Query: 1616 KLLLEG-PPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL----NAEGME 1452
             LL EG  P+HRF+ L++FAPD + ++ L  L+  A LVQGLW PKSSLL       G +
Sbjct: 353  SLLCEGLAPVHRFSVLKHFAPDCTTKEILDALQNHALLVQGLWAPKSSLLLGTSKETGAQ 412

Query: 1451 ELARDYVLLRFSSSPVIHNSQLPPTSDLVTAMRNVLNILAFPRPKLGDWKFKEPPDISFM 1272
             +ARDYVLL F  +PV   S L   S L TA+   LNIL   RP + DWKFK   DISF+
Sbjct: 413  RIARDYVLLLFWKNPVFSFSSLHFPSSLKTAVNKFLNILGVERPSVKDWKFKGQTDISFI 472

Query: 1271 KLHPNIVXXXXXXXXXXXKQITNYIFRGRDKLALKN---PSKSVTANNSAILKXXXXXXX 1101
            K +P++V           + I N    G+     KN   PS+ V   NS           
Sbjct: 473  KNYPDVVKKQEEVWGDLERDIMNMFGDGKSGRGPKNTSIPSRPVKPLNS------NKGVP 526

Query: 1100 XXXXXXXXXXXXXNETREAL-PKVLQKIFQDHKVCSFQQICQRLRELAVSKSYLLKGPSR 924
                         ++ RE L  K+L K+ Q+HKVCS Q +CQ LRELA++K  L K   R
Sbjct: 527  KGTSEVVGGKKIPDDIREVLCSKILPKVIQEHKVCSLQLMCQGLRELALNKLNLPKADDR 586

Query: 923  EAVAAANGVDAPVEELQAVIGQVAINIHGVYVAKSSSDHPDCDAFRKVVIDLLIAEGPNA 744
             A AAA G  +P  EL  ++ + AINIHG+YV KSS++HP  D FR VVIDLL   G  A
Sbjct: 587  FARAAACGTASP-GELVKLLDETAINIHGLYVLKSSAEHPQYDPFRNVVIDLLRQNGLAA 645

Query: 743  KLKKASIVEAAKLQLGKSDIGDAEYQK 663
            KLKKA I +AAK  L K D+   EY K
Sbjct: 646  KLKKAEIFDAAKNAL-KRDVTSNEYSK 671


>ref|XP_006425717.1| hypothetical protein CICLE_v10025048mg [Citrus clementina]
            gi|568824759|ref|XP_006466762.1| PREDICTED: DNA-directed
            RNA polymerase III subunit RPC5-like [Citrus sinensis]
            gi|557527707|gb|ESR38957.1| hypothetical protein
            CICLE_v10025048mg [Citrus clementina]
          Length = 690

 Score =  537 bits (1384), Expect = e-149
 Identities = 328/705 (46%), Positives = 426/705 (60%), Gaps = 13/705 (1%)
 Frame = -1

Query: 2687 LDLDDMD-----SPKQGSVRPSRFAPKGSKLKPKTEATVSSATVL--KQSKDSDSVPLTK 2529
            +DLDD D     +P Q   R SRF PK SKL PK E     A     K+ K  D+   T 
Sbjct: 1    MDLDDFDDLDKATPSQVPSRVSRFLPKSSKLVPKPEPPPEKAEPQQPKKPKTEDNFQQTT 60

Query: 2528 KEEFDPKPLLPPTSFAAAKAKDEASGSNTVVPMDVXXXXXXXXXXXXXXXXXXLNDNGED 2349
                 PK   P  S    K + +        P+                       + ED
Sbjct: 61   SVNLTPKTE-PSVSNGDVKLESK--------PVPEPETEPRKEEPVDLNMDELHLQDDED 111

Query: 2348 EVVREVDVYFNPSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEVDLAVDV 2169
             +VRE+DV+F PSID+++KLYV QYPLRPLWRPYEL+ERCEEVRVK  +++VE+DL++DV
Sbjct: 112  MIVREIDVFFTPSIDADSKLYVMQYPLRPLWRPYELDERCEEVRVKPSTSEVEMDLSIDV 171

Query: 2168 DSKNYDRDADPRVIMQKQTLTSSSKPPIATRYAVGVLVGNKLHLNSVDAVVQLRPSLQHL 1989
            DS N+D +   R+ M KQTL+++  PP AT YA+GVL+GNKLHLN + AVVQLR S+  L
Sbjct: 172  DSNNWDSEKASRLSMPKQTLSTTWMPPQATGYAIGVLIGNKLHLNPIHAVVQLRTSMGFL 231

Query: 1988 KPEGARTKNTATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENWISLKYL 1809
            K  G++ KN   + +   VK ED  ++K +GS+KKQNK    S EQ    EE W+ LKY 
Sbjct: 232  KSGGSKRKNNVASEI--PVKLEDSNQDKSVGSSKKQNK-RMGSIEQRSNEEECWVPLKYH 288

Query: 1808 GARSDASARYLKKMVEQDESPLEFSMSRYDYVNTLCPGKLKDDSGSNYPSKRVLLSYPPE 1629
            G++SD SARYL++M+ ++ SP+ F+M+ YDYV++LCPG   +++ S  PS+R LLS P E
Sbjct: 289  GSKSDFSARYLQRMLVEENSPIHFTMNPYDYVSSLCPGAGSNNTKSKGPSRRFLLSMPLE 348

Query: 1628 ERFRKLLLEGPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL-NAEGME 1452
            ERF+KLL EG P+ RF+ L +FAP+ +VED +GVL K   LVQGLW P+S LL N + M+
Sbjct: 349  ERFKKLLCEGEPVQRFSTLMHFAPNDTVEDVIGVLHKNGLLVQGLWAPRSPLLFNNDKMK 408

Query: 1451 ELARDYVLLRFSSSPVIHNSQLPPTSDLVTAMRNVLNILAFPRPKLGDWKFKEPPDISFM 1272
             LARDYVLL FS + V+    L  +  L   ++  LNI A  RP   DWKF++  D+SF+
Sbjct: 409  CLARDYVLLSFSKNSVVKFQHLSVSPKLRDHIKCFLNIFAVERPDFKDWKFRQQTDLSFI 468

Query: 1271 KLHPNIVXXXXXXXXXXXKQITNYIFR-GRDKLALKNPS-KSVTANNSAILKXXXXXXXX 1098
            K HPNIV           KQIT+ I + G+    L+N + KS   N              
Sbjct: 469  KEHPNIVIKQEQVWAAAEKQITDVINKLGKSGSTLRNDAGKSAMVNKHL---KAINSSNG 525

Query: 1097 XXXXXXXXXXXXNETREALPKVLQKIFQDHKVCSFQQICQRLRELAVSKSYLLKGPSREA 918
                        NE+REALPK LQK+FQ HKVCS   I Q LR+LA+S+S L K  +R  
Sbjct: 526  PSGALTGNKNLSNESREALPKALQKLFQIHKVCSLPLIKQGLRDLAISQSTLPKADARMT 585

Query: 917  VAAANGVDA---PVEELQAVIGQVAINIHGVYVAKSSSDHPDCDAFRKVVIDLLIAEGPN 747
            V AA  VD+     +E   VI QVA NIHG YV+KSS D P     RKVV DLL+A GP+
Sbjct: 586  VLAAEIVDSSFVDTQEFAEVISQVATNIHGFYVSKSSED-PQHGPLRKVVTDLLLAGGPD 644

Query: 746  AKLKKASIVEAAKLQLGKSDIGDAEYQKVLKEICVSTKGSCWVLK 612
            AKLKKA +VEAA+  L K +I +AEY KV+ +IC S KGS W+LK
Sbjct: 645  AKLKKADVVEAARHVL-KREISNAEYSKVMSDICES-KGSAWILK 687


>gb|ABU45193.1| unknown [Petunia integrifolia subsp. inflata]
          Length = 666

 Score =  536 bits (1381), Expect = e-149
 Identities = 336/699 (48%), Positives = 427/699 (61%), Gaps = 22/699 (3%)
 Frame = -1

Query: 2690 DLDLDDMDSPKQGSVRPSRFAPKGSKLKPKTEATVSSATVLKQSKDSDSVPLT------K 2529
            DLD D    P   S R +RFAPK SKLKP+           K   + +  PLT      K
Sbjct: 2    DLDFDGPSKPPPSS-RAARFAPKNSKLKPQP----------KPEPEPEPEPLTDPTIPSK 50

Query: 2528 KEEFDPKPLLPPTSFAAAKAKDEASGSNTVVPMDVXXXXXXXXXXXXXXXXXXLNDNGED 2349
            KEE D KPLL   + ++A + D    ++  V  DV                    ++GED
Sbjct: 51   KEEIDSKPLLTLENGSSAPSIDTEK-ADVEVQQDVAMEIV---------------ESGED 94

Query: 2348 EVVREVDVYFNPSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEVDLAVDV 2169
            EVVRE+D+YF PS+D NT+LYV Q P+RP+WRPYELEERC+EVR++  +AQ+EVDLA+D 
Sbjct: 95   EVVREIDMYFTPSLDPNTQLYVLQSPMRPVWRPYELEERCKEVRLRPTTAQMEVDLAIDF 154

Query: 2168 DSKNYDRDADPRVIMQKQTLTSSSKP-PIATR-YAVGVLVGNKLHLNSVDAVVQLRPSLQ 1995
            DSKN+DRD+     M+KQT+++S  P P  T  YAVGVL+G+KLHLN +  VVQLRPS Q
Sbjct: 155  DSKNFDRDSIYAEKMEKQTVSTSWIPVPTGTSGYAVGVLIGDKLHLNPIHTVVQLRPSKQ 214

Query: 1994 HLKPEGARTKNTATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENWISLK 1815
            HLK E    KN AT+N ++ V+ E+ KE KP+  +KKQNKP       +K  EE+W+ LK
Sbjct: 215  HLK-ESELKKNIATSNDEKTVENEEIKENKPVAPSKKQNKPPG----NDKDIEEHWVHLK 269

Query: 1814 YLGARSDASARYLKKMVEQDESPLEFSMS----------RYDYVNTLCPGKLKDDSGSNY 1665
            Y GARS+ SARYL++M  ++ SP+ FSMS          R DY+ TLCPG+  D     Y
Sbjct: 270  YHGARSEISARYLQRMAMEEGSPIPFSMSLAFFSVNLIHRVDYLRTLCPGRPNDTD--KY 327

Query: 1664 PSKRVLLSYPP-EERFRKLLLEGPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWV 1488
               R+ +S  P +ERFR  L EGPPIHRF AL++ A D  VE+ L VL++ A++VQGLWV
Sbjct: 328  KDLRIRVSQLPLDERFRTWLHEGPPIHRFGALKHLALDNPVEEILEVLQRYAQVVQGLWV 387

Query: 1487 PKSSLLNA--EGMEELARDYVLLRFSSSPVIHNSQLPPTSDLVTAMRNVLNILAFPRPKL 1314
            PKSSL+    +G E LARD+VL  FS SP I  S      +   A    L +LA  RP L
Sbjct: 388  PKSSLVYGRNDGHEVLARDFVLFEFSKSPFIKQSVFDRKPEFFKAATPALKLLAVERPDL 447

Query: 1313 GDWKFKEPPDISFMKLHPNIVXXXXXXXXXXXKQITNYIFRGRDKLALKNPSKSVTANNS 1134
             DWK KE PD  F  L+ ++V           KQI   +  GR++  +KNPS     N S
Sbjct: 448  NDWKLKEHPDKEFENLYGDLVKEQQVTWERLGKQIYGLLAGGRNRPTMKNPS-----NPS 502

Query: 1133 AILKXXXXXXXXXXXXXXXXXXXXNETREALPKVLQKIFQDHKVCSFQQICQRLRELAVS 954
            A +                       TREAL K LQK+F+ HKVCSFQQI  RLRE AVS
Sbjct: 503  AGIPALPSGGKPTPRSVTRTSMSE-RTREALQKALQKVFRTHKVCSFQQIRLRLREAAVS 561

Query: 953  KSYLLKGPSREAVAAANGVD-APVEELQAVIGQVAINIHGVYVAKSSSDHPDCDAFRKVV 777
            ++   KG ++ AVAAA+ VD AP EELQAVI QVA NIHG YV KSS D+P  DA RKVV
Sbjct: 562  ENDRPKGNAKGAVAAASFVDDAPPEELQAVIDQVAFNIHGDYVLKSSPDNPQYDALRKVV 621

Query: 776  IDLLIAEGPNAKLKKASIVEAAKLQLGKSDIGDAEYQKV 660
            ++LLI EGP+AKLKKA+I++AAK +L + DI  AE+QKV
Sbjct: 622  VELLIGEGPSAKLKKATIMKAAKSELNR-DIPPAEFQKV 659


>gb|EOX91150.1| Transcription regulators,zinc ion binding, putative isoform 3
            [Theobroma cacao]
          Length = 736

 Score =  529 bits (1363), Expect = e-147
 Identities = 325/750 (43%), Positives = 426/750 (56%), Gaps = 53/750 (7%)
 Frame = -1

Query: 2684 DLDDMDSPKQGSVRPSRFAPKGSKLKPKTEATVSSATVLKQSKDSDSVPLTKKEEFDPKP 2505
            DL ++D P Q + R ++FAPK SK  P+ +        LK    S   PL    + +P P
Sbjct: 5    DLGELDGPSQVNTRTTKFAPKSSKFAPRLKPNFK----LKPEPSSKQEPLNSGPKPEPPP 60

Query: 2504 LLPPTSFAA--------------AKAKDEASGSNTVVPMDVXXXXXXXXXXXXXXXXXXL 2367
              PP S +               A+ K E S SN  V M++                   
Sbjct: 61   P-PPESISRKKENEEEDIKPPVIAETKTEQSFSNGAVKMEIEEEAKEDVIMNEG------ 113

Query: 2366 NDNGEDEVVREVDVYFNPSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEV 2187
            N   ED VVRE+DV+F PSID+NT+LYV QYPLRP WRPYEL+ERCEEVRVK  S +VE+
Sbjct: 114  NREEEDMVVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEM 173

Query: 2186 DLAVDVDSKNYDRDADPRVIMQKQTLTSSSKPPIATRYAVGVLVGNKLHLNSVDAVVQLR 2007
            DLAVDVDS NYD +   R+ M KQTL+SS  PP  T YAVGVL+G+KLHLN + AVVQLR
Sbjct: 174  DLAVDVDSNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLR 233

Query: 2006 PSLQHLKPEGARTKNTATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENW 1827
            PS+ HLKP  ++ KN A  + +  VK E+  + K  GS+ KQNK   +S EQ    +E W
Sbjct: 234  PSMCHLKPSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDKECW 293

Query: 1826 ISLKYLGARSDASARYLKKMVEQDESPLEFSMSRYDYVNTLCPGKLKDDSGSNYPSKRVL 1647
            + LKY  +++D SA+YL++M+ ++   ++F+MS YDYV++LCPG   ++     PS+R+L
Sbjct: 294  VPLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPGASNNNKAQG-PSRRLL 352

Query: 1646 LSYPPEERFRKLLLEGPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLLN 1467
            LS P EER +KLL EGPP HRF+AL++FAPD S+ED   VL+K A LVQGLWVPKSSLL 
Sbjct: 353  LSIPLEERLKKLLSEGPPFHRFSALKHFAPDASIEDIFEVLQKHALLVQGLWVPKSSLLF 412

Query: 1466 AEG-MEELARDYVLLRFSSSPVIHNSQLPPTS-DLVTAMRNVLNILAFPRPKLGDWKFKE 1293
             E   + LARDYVLL FS +P+I  +Q+   S      ++  L ILA  RP   DWK KE
Sbjct: 413  PEDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRKEEVKGFLKILAIERPSFKDWKLKE 472

Query: 1292 PPDISFMKLHPNIVXXXXXXXXXXXKQITNYIFRGRDKLALKNPSKSVTANNSAILKXXX 1113
              D  F KL+P+IV             + N+I RG      +    +V     A+     
Sbjct: 473  NADEGFKKLYPDIVKNQEQIWRAGEDNVINHICRGAKGGPSRTKPGTVIKPEKAM--NSD 530

Query: 1112 XXXXXXXXXXXXXXXXXNETREALPKVLQKIFQDHKVCSFQQICQRLRELAVSKSYLLKG 933
                             +ETREA+PK L+K+FQ HKVCS Q I + LR+LA+S+S L K 
Sbjct: 531  KGVRRVAPAVQAGRTMSDETREAIPKALKKVFQTHKVCSLQLIRKGLRDLALSQSTLPKA 590

Query: 932  PSREAVAAANGVDAPVEELQAVIGQVAINIH-GVYVAKSSSDHPDCDAF----------- 789
             +R  V AA G DAP  ELQ V+ +VA+ +H G++V +SS +HP+ D             
Sbjct: 591  DARMVVKAAYGADAPEHELQEVVSEVAVELHGGLFVLRSSPEHPEYDPLRLHKYVQLVFK 650

Query: 788  -------------------------RKVVIDLLIAEGPNAKLKKASIVEAAKLQLGKSDI 684
                                     R+VVI+LL  +G   KLKKA +  AA L L K +I
Sbjct: 651  WEEMFMVSMFFLQNPSFSSELFFPCREVVINLLRVKG---KLKKADVSAAALLSL-KREI 706

Query: 683  GDAEYQKVLKEICVSTKGSCWVLKSGDGNP 594
             + EY KV+ + C   K S WVLKSGDG P
Sbjct: 707  SNNEYNKVMSDFC-EYKSSWWVLKSGDGKP 735


>gb|EMJ03134.1| hypothetical protein PRUPE_ppa002228mg [Prunus persica]
          Length = 698

 Score =  515 bits (1327), Expect = e-143
 Identities = 310/714 (43%), Positives = 415/714 (58%), Gaps = 16/714 (2%)
 Frame = -1

Query: 2687 LDLDDMDSPKQGSVRPSRFAPKGSKLKPKTEATVSSATVLKQSKDSD-SVPLTKKEEFDP 2511
            +DLDD D P Q + RPSRF P+ SK KPK +    S  V+KQ      + P  +K E  P
Sbjct: 1    MDLDDFDKPSQVAARPSRFVPRSSKAKPKPK----SEPVVKQEPPKPVTEPEPEKPELKP 56

Query: 2510 KPLLPPTSFAAAKAKDEASGSNTVVPMDVXXXXXXXXXXXXXXXXXXLNDNGEDEVVREV 2331
            KP         A+ ++E          D                     D+ ED +VRE+
Sbjct: 57   KP--EELDALIAEKEEEEGTDGAPKNEDSNGGLKMETDEEPKEDDPMEEDDVEDTIVREI 114

Query: 2330 DVYFNPSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEVDLAVDVDSKNYD 2151
            DV+FNP ID N++LYV QYPLRP WRPYELE RCEEVR+K  ++++E+DL++++D KNYD
Sbjct: 115  DVFFNPHIDDNSQLYVLQYPLRPWWRPYELENRCEEVRLKPATSEMEIDLSLNLDPKNYD 174

Query: 2150 RDADPRVIMQKQTLTSSSKPP--IATRYAVGVLVGNKLHLNSVDAVVQLRPSLQHLKPEG 1977
             D   R+ M KQTL ++ KP     T YAVGVL+G+KLHLN +D VVQLRPSL+HLK   
Sbjct: 175  EDCGNRLKMTKQTLYTTWKPTRTTGTGYAVGVLMGDKLHLNPIDKVVQLRPSLEHLKSGS 234

Query: 1976 ARTKNTATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENWISLKYLGARS 1797
            +R KN+ T + +  VK E+ ++E   G +KKQ K   +S E+    EE+W+ L+Y  + S
Sbjct: 235  SRRKNSVTGDAEVKVKLEESRQETSSGPSKKQTKRMESSTEKKTEDEESWVPLQYHSSES 294

Query: 1796 DASARYLKKMVEQDESPLEFSMSRYDYVNTLCPGKLKDDSGSNYPSKRVLLSYPPEERFR 1617
            D SA+YL++MV Q+ SP++F+MS YDYVN+LCP   K        S+R LLS P EER +
Sbjct: 295  DFSAKYLRRMVGQESSPIQFTMSPYDYVNSLCPRTCKGS------SRRFLLSLPLEERIK 348

Query: 1616 KLLLEGPPIHRFAALRN-FAPDLSVEDTLGVLRKLARLV--QGLWVPKSSLL-------- 1470
            KLL+E P   RF+ L+  FAPD + E+ L VL+K A+L+   GLWVPK+ LL        
Sbjct: 349  KLLVEEPLARRFSDLKKYFAPDHTGEELLDVLQKHAQLLLDSGLWVPKTLLLYPSKDMKD 408

Query: 1469 NAEGMEELARDYVLLRFSSSPVIHNSQLPPTSDLVTAMRNVLNILAFPRPKLGDWKFKEP 1290
                  + AR+YVL  F  + VI NSQL    +        L ILA  RP   DWK KE 
Sbjct: 409  RDHVARQTARNYVLNLFRKNTVISNSQLNLPQNHKNHAYESLKILAVSRPSSQDWKLKEQ 468

Query: 1289 PDISFMKLHPNIVXXXXXXXXXXXKQITNYIFRGRDKLALKNPSKSVTANNSAILKXXXX 1110
             D SF +L+P+I            +++ N  F+      +KN    +T+     L     
Sbjct: 469  SDKSFKELYPDIFKSQEQNWERMEEKLVN-AFKAHTDRGVKN--ACMTSKPGKSLNSDKG 525

Query: 1109 XXXXXXXXXXXXXXXXNETREALPKVLQKIFQDHKVCSFQQICQRLRELAVSKSYLLK-- 936
                            +ETR ALP+ ++++  +HKVC+F+ IC+ LR LAV KS L K  
Sbjct: 526  TTKSASDVQIGGRTMSDETRAALPEAIKEVLHEHKVCNFRLICEGLRRLAVRKSSLPKVD 585

Query: 935  GPSREAVAAANGVDAPVEELQAVIGQVAINIHGVYVAKSSSDHPDCDAFRKVVIDLLIAE 756
              ++  + AA GVDAP  ELQ VI QVA +IHG+YV KSS +H + D  RKVVIDLL  +
Sbjct: 586  PKTKRVIDAAYGVDAPQHELQKVICQVAADIHGLYVLKSSPEHSEHDRLRKVVIDLLCTK 645

Query: 755  GPNAKLKKASIVEAAKLQLGKSDIGDAEYQKVLKEICVSTKGSCWVLKSGDGNP 594
            GPNAKLK+  + EAAK+ L + DI   EY KV+ + CV  KGS W+LKSGDG P
Sbjct: 646  GPNAKLKRGEVFEAAKIAL-ERDINTNEYNKVMNDFCV-FKGSAWILKSGDGGP 697


>ref|XP_006590438.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Glycine
            max]
          Length = 697

 Score =  511 bits (1315), Expect = e-141
 Identities = 319/724 (44%), Positives = 434/724 (59%), Gaps = 27/724 (3%)
 Frame = -1

Query: 2687 LDLDDMD-SPKQGSVRPSRFAPKGSKLKPKTEATVSSATVLKQSKDSDSVPLTKKEEFDP 2511
            +D DD++ +P + + R S+FAPK SKLKPK ++  +        K     P++K E    
Sbjct: 1    MDFDDLEEAPIKATSRVSKFAPKSSKLKPKPKSEPAPP------KPEPQPPISKPE---- 50

Query: 2510 KPLLPPTSFAAAKAKDEASGSNTVVP------MDVXXXXXXXXXXXXXXXXXXLNDN--G 2355
                P    AA   K+E  G  TV P      +D                   ++++   
Sbjct: 51   ----PQEFVAATVKKNEDDGVETVPPTHTKPELDATVKMEEAEDEPESVRDDPIDEDIPE 106

Query: 2354 EDEVVREVDVYFNPSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEVDLAV 2175
            ED VVRE+DV+F+PS+D+ T+LYVFQYPLRP WRPY+L+E+CEEVR+KT +++VE+DL++
Sbjct: 107  EDTVVREIDVFFSPSVDAQTQLYVFQYPLRPSWRPYDLDEQCEEVRLKTKTSEVEIDLSI 166

Query: 2174 DVDSKNYDRDADPRVIMQKQTLTSSSKPPIATRYAVGVLVGNKLHLNSVDAVVQLRPSLQ 1995
            D+DS + D++   +  + KQTL+++ KP  A   AVG+L+G+KLHL+ V AVVQLRP+LQ
Sbjct: 167  DLDSDHIDKEFATKYNITKQTLSTTWKPSHANGCAVGLLMGDKLHLHPVHAVVQLRPTLQ 226

Query: 1994 HLKPEGARTKNTATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSAS-NEQNKGTEENWISL 1818
            HL   G++ KN A+      VK E   EEK + ++KKQNK +  S  EQ    +E W+ L
Sbjct: 227  HLNSGGSKRKNAASTGANATVKIEGSNEEKSVATSKKQNKQTGPSIIEQKSDGDECWVPL 286

Query: 1817 KYLGARSDASARYLKKMVEQDESPLEFSMSRYDYVNTLCPGKLKDDSGSNYP---SKRVL 1647
            KY   +SD S+RYL++MV Q+ SP+ F+M  YDYV  LCPG     S +N P   SKR L
Sbjct: 287  KYHSCKSDISSRYLQQMVTQESSPINFTMRAYDYVTALCPG----GSSNNLPKGLSKRYL 342

Query: 1646 LSYPPEERFRKLLLEGPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLLN 1467
            LS P EER +K +LE  P+HRF+A+++FAP+ S  + LG L++ A LV GLW  KSSLL 
Sbjct: 343  LSLPVEERLKK-MLEDRPLHRFSAIKHFAPEYSENELLGFLQQHAILVWGLWTAKSSLLY 401

Query: 1466 AE-GMEELARDYVLLRFSSSPVIHNSQLP-PTSDLVTAMRNVLNILAFPRPKLGD----- 1308
             + G+E LARDY LL FS S  +  S +     +LV  +RN L I    R  L       
Sbjct: 402  PDGGVETLARDYSLLLFSKSLKVQFSDVSIRGGELVNRVRNCLKIFGVERNDLDKSTGKP 461

Query: 1307 ---WKFKEPPDISFMKLHPNIVXXXXXXXXXXXKQITNYIFR-GRDKL---ALKNPSKSV 1149
               WKF+E PD SF KL+P+IV           KQ++ +    G+ K+   A+ N   + 
Sbjct: 462  NPYWKFRELPDESFKKLYPDIVEKQEELFKGLEKQLSGFSSNVGKRKIGKNAVANQGVNT 521

Query: 1148 TANNSAILKXXXXXXXXXXXXXXXXXXXXNETREALPKVLQKIFQDHKVCSFQQICQRLR 969
              + S   +                    NETR ALP  L+K+FQ HKVCSF+ IC+ LR
Sbjct: 522  EVHKS---ESSDQRVTSLGRVPPAKMTMSNETRHALPIALKKLFQTHKVCSFKLICEGLR 578

Query: 968  ELAVSKSYLLKGPSREAVAAANGVDAPVEELQAVIGQVAINIHGVYVAKSSSDHPDCDAF 789
            E+AVSK+ L KG S+ AV AA+ +D P  EL AVI +VA  I+G YV KSS D P    F
Sbjct: 579  EMAVSKAMLSKGDSKMAVDAAHSLDGPHNELMAVISEVACEINGSYVLKSSPDDP----F 634

Query: 788  RKVVIDLLIAEGPNAKLKKASIVEAAKLQLGKSDIGDAEYQKVLKEICVSTKGSCWVLKS 609
            R VVID+L   GPNAKLKKA I+EAA+ +LG+ ++   EY KV+ E+CVS KGS WVLKS
Sbjct: 635  RDVVIDMLCGSGPNAKLKKAEILEAARRKLGR-EVASNEYTKVMSELCVS-KGSVWVLKS 692

Query: 608  GDGN 597
            GDG+
Sbjct: 693  GDGS 696


>gb|EOX91149.1| Transcription regulators,zinc ion binding, putative isoform 2
            [Theobroma cacao]
          Length = 588

 Score =  500 bits (1287), Expect = e-138
 Identities = 282/579 (48%), Positives = 372/579 (64%), Gaps = 3/579 (0%)
 Frame = -1

Query: 2366 NDNGEDEVVREVDVYFNPSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEV 2187
            N   ED VVRE+DV+F PSID+NT+LYV QYPLRP WRPYEL+ERCEEVRVK  S +VE+
Sbjct: 17   NREEEDMVVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEM 76

Query: 2186 DLAVDVDSKNYDRDADPRVIMQKQTLTSSSKPPIATRYAVGVLVGNKLHLNSVDAVVQLR 2007
            DLAVDVDS NYD +   R+ M KQTL+SS  PP  T YAVGVL+G+KLHLN + AVVQLR
Sbjct: 77   DLAVDVDSNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLR 136

Query: 2006 PSLQHLKPEGARTKNTATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENW 1827
            PS+ HLKP  ++ KN A  + +  VK E+  + K  GS+ KQNK   +S EQ    +E W
Sbjct: 137  PSMCHLKPSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDKECW 196

Query: 1826 ISLKYLGARSDASARYLKKMVEQDESPLEFSMSRYDYVNTLCPGKLKDDSGSNYPSKRVL 1647
            + LKY  +++D SA+YL++M+ ++   ++F+MS YDYV++LCPG   ++     PS+R+L
Sbjct: 197  VPLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPGASNNNKAQG-PSRRLL 255

Query: 1646 LSYPPEERFRKLLLEGPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLLN 1467
            LS P EER +KLL EGPP HRF+AL++FAPD S+ED   VL+K A LVQGLWVPKSSLL 
Sbjct: 256  LSIPLEERLKKLLSEGPPFHRFSALKHFAPDASIEDIFEVLQKHALLVQGLWVPKSSLLF 315

Query: 1466 AEG-MEELARDYVLLRFSSSPVIHNSQLPPTS-DLVTAMRNVLNILAFPRPKLGDWKFKE 1293
             E   + LARDYVLL FS +P+I  +Q+   S      ++  L ILA  RP   DWK KE
Sbjct: 316  PEDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRKEEVKGFLKILAIERPSFKDWKLKE 375

Query: 1292 PPDISFMKLHPNIVXXXXXXXXXXXKQITNYIFRGRDKLALKNPSKSVTANNSAILKXXX 1113
              D  F KL+P+IV             + N+I RG      +    +V     A+     
Sbjct: 376  NADEGFKKLYPDIVKNQEQIWRAGEDNVINHICRGAKGGPSRTKPGTVIKPEKAM--NSD 433

Query: 1112 XXXXXXXXXXXXXXXXXNETREALPKVLQKIFQDHKVCSFQQICQRLRELAVSKSYLLKG 933
                             +ETREA+PK L+K+FQ HKVCS Q I + LR+LA+S+S L K 
Sbjct: 434  KGVRRVAPAVQAGRTMSDETREAIPKALKKVFQTHKVCSLQLIRKGLRDLALSQSTLPKA 493

Query: 932  PSREAVAAANGVDAPVEELQAVIGQVAINIH-GVYVAKSSSDHPDCDAFRKVVIDLLIAE 756
             +R  V AA G DAP  ELQ V+ +VA+ +H G++V +SS +HP+ D  R+VVI+LL  +
Sbjct: 494  DARMVVKAAYGADAPEHELQEVVSEVAVELHGGLFVLRSSPEHPEYDPLREVVINLLRVK 553

Query: 755  GPNAKLKKASIVEAAKLQLGKSDIGDAEYQKVLKEICVS 639
            G   KLKKA +  AA L L K +I + EY K L+ + ++
Sbjct: 554  G---KLKKADVSAAALLSL-KREISNNEYNKALRNMDIA 588


>ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5 [Medicago truncatula]
            gi|358344405|ref|XP_003636280.1| DNA-directed RNA
            polymerase III subunit RPC5 [Medicago truncatula]
            gi|355502215|gb|AES83418.1| DNA-directed RNA polymerase
            III subunit RPC5 [Medicago truncatula]
            gi|355513299|gb|AES94922.1| DNA-directed RNA polymerase
            III subunit RPC5 [Medicago truncatula]
          Length = 683

 Score =  493 bits (1270), Expect = e-136
 Identities = 296/709 (41%), Positives = 422/709 (59%), Gaps = 12/709 (1%)
 Frame = -1

Query: 2687 LDLDDMDSPKQGSVRPSRFAPKGSKLKPKTEATVSSATVLKQSKDSDSVPLTKKEEFD-- 2514
            +D DD+D+P +  V  SRFAPK SK KPK E     + V K      +   T+ +E D  
Sbjct: 1    MDFDDLDAPVKPRV--SRFAPKSSKFKPKKE---EPSLVPKSEPPPLASAKTEPQEIDLT 55

Query: 2513 -PKPLL-PPTSFAAAKAKDEASGSNTVVPMDVXXXXXXXXXXXXXXXXXXLNDNGEDEVV 2340
             P P+   P +     A+ +  G      +DV                     + ED VV
Sbjct: 56   APTPVKHEPNASVKTDAESKIEGKVDSRNVDVEMTEAVDGSREVNPM------DEEDTVV 109

Query: 2339 REVDVYFNPSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEVDLAVDVDSK 2160
            RE+DVYF+PSID++TKLYV QYPLRP WRPY+L+E+CEEVR+K G+++VEVDL++D++S 
Sbjct: 110  REIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDLSIDLESY 169

Query: 2159 NYDRDADPRVIMQKQTLTSSSKPPIATRYAVGVLVGNKLHLNSVDAVVQLRPSLQHLKPE 1980
            N ++    ++   KQTL+++ KPP A   AVG+L+G+KLHL+ + AVVQLRPS  +L   
Sbjct: 170  NVEKATADKLKYTKQTLSTTWKPPPANGCAVGLLMGDKLHLHPIHAVVQLRPSRHYLDSG 229

Query: 1979 GARTKNTATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENWISLKYLGAR 1800
            G+  KN AT+N           + K    + +Q    + S EQ   + + W+ L+Y G +
Sbjct: 230  GSEKKNVATSN----------NQNKQTTPSMEQKSDGAPSIEQKSDSNQCWVPLEYHGCK 279

Query: 1799 SDASARYLKKMVEQDESPLEFSMSRYDYVNTLCPGKLKDDSGSNYPSKRVLLSYPPEERF 1620
            SD S+RY ++MV  + SP+ F MS YDY+ TLCPG +  ++ +  PSKR LLS P E+R 
Sbjct: 280  SDISSRYFQQMVTHESSPINFEMSTYDYIATLCPG-VSSNTLAKGPSKRYLLSLPVEKRL 338

Query: 1619 RKLLLEGPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL-NAEGMEELA 1443
            + LL+EGPP+HRF+A+++FAP+ S ++ L VL K A+L++G WVP+SSLL    G+E LA
Sbjct: 339  QTLLIEGPPLHRFSAIKHFAPECSDDELLSVLEKQAQLLRGYWVPRSSLLFPTGGIESLA 398

Query: 1442 RDYVLLRFSSSPVIHNSQLPPT--SDLVTAMRNVLNILAFP----RPKLGDWKFKEPPDI 1281
            R+Y+L+RF  S  + + +L      +L   M++ +   A      + K   WKFKE PD 
Sbjct: 399  RNYILVRFHKSLTVKSDELRRLGGGELGNRMKHFVMQFALEKFDLKSKENYWKFKELPDE 458

Query: 1280 SFMKLHPNIVXXXXXXXXXXXKQITNYIFRGRDKLALKNPSKSVTANNSAILK-XXXXXX 1104
            SF+K  P +V            ++ + I     K  LK+   +   NN+           
Sbjct: 459  SFIKEFPIVVKKQEEIFKILENEVNSIIGTLGGKRKLKSAITNSGVNNALFTSTNSDPRA 518

Query: 1103 XXXXXXXXXXXXXXNETREALPKVLQKIFQDHKVCSFQQICQRLRELAVSKSYLLKGPSR 924
                          +ETR ALP  L+K+FQ HKVCSFQ ICQ LR LA++++ L KG S+
Sbjct: 519  TSLGEDPPRSMTMSSETRHALPIALKKLFQTHKVCSFQLICQELRGLALAQTMLPKGGSK 578

Query: 923  EAVAAANGVDAPVEELQAVIGQVAINIHGVYVAKSSSDHPDCDAFRKVVIDLLIAEGPNA 744
             +V AAN +D P +EL+A++G+VA +IHG YV KS+ + P    FR VVID+L   GPN 
Sbjct: 579  MSVDAANSLDVPQDELKAILGEVACDIHGCYVLKSAQNDP----FRDVVIDMLRGSGPNG 634

Query: 743  KLKKASIVEAAKLQLGKSDIGDAEYQKVLKEICVSTKGSCWVLKSGDGN 597
            KLKKA I+EAA+ +LG+ D+ + EY K + E+CVS KGS WVLKSGDG+
Sbjct: 635  KLKKAEILEAARRKLGR-DVPNNEYIKAVSELCVS-KGSFWVLKSGDGS 681


>ref|XP_004232385.1| PREDICTED: uncharacterized protein LOC101252245 [Solanum
            lycopersicum]
          Length = 659

 Score =  482 bits (1241), Expect = e-133
 Identities = 303/699 (43%), Positives = 400/699 (57%), Gaps = 4/699 (0%)
 Frame = -1

Query: 2675 DMDSPKQGSVRPSRFAPKGSKLKPKTEATVSSATVLKQSKDSDSVPLTKKEEFDPKPLLP 2496
            D D P +   R +RFAPK SKLKP+ ++      V       DS   TKKEEF  +P L 
Sbjct: 4    DFDGPSKVPSRQARFAPKNSKLKPQPKSETLPLKV-------DSEIPTKKEEFVSQPPLR 56

Query: 2495 PTSFAAAKAKDEASGSNTVVPMDVXXXXXXXXXXXXXXXXXXLNDNGEDEVVREVDVYFN 2316
                   +AK E          DV                    D+ +DEVVREVDV+  
Sbjct: 57   DHIVKNGEAKVED---------DVLLNGETTGNDLAEEQVGMETDSDQDEVVREVDVWLT 107

Query: 2315 PSIDSNTKLYVFQYPLRPLWRPYELEERCEEVRVKTGSAQVEVDLAVDVDSKNYDRDADP 2136
            PS +   + YV QYPLR  WRPY L+ERC++VR++  SA++EVDLA+D DSKN+DRD+  
Sbjct: 108  PSAN---EFYVLQYPLRSEWRPYGLDERCQDVRLRPSSAEMEVDLAIDFDSKNFDRDSVH 164

Query: 2135 RVIMQKQTLTSSSKPP-IATRYAVGVLVGNKLHLNSVDAVVQLRPSLQHLKPEGARTKNT 1959
               ++KQ +++   P      +AVG+ +G+K HLN V A+VQLRPSLQH K   +  KN 
Sbjct: 165  AATIKKQIVSTKWVPSSTCADFAVGIFIGDKFHLNPVHAIVQLRPSLQHRKE--SELKNL 222

Query: 1958 ATNNLKEAVKEEDFKEEKPIGSAKKQNKPSSASNEQNKGTEENWISLKYLGARSDASARY 1779
             T+N +++ + ED KE+KP+G +KKQNK         K   E+W+ LKY G RSD SAR+
Sbjct: 223  TTSNDEKSCENEDVKEKKPVGLSKKQNKLPG----NYKDIGEHWLHLKYHGTRSDISARH 278

Query: 1778 LKKMVEQDESPLEFSMSRYDYVNTLCPGKLKDDSGSNYPSKRVLLSYPP-EERFRKLLLE 1602
            L+KM  +  SP+ FSM   DY+N +CP +  D       + R  LS  P EER R  LLE
Sbjct: 279  LQKMAMEGGSPVPFSMIPSDYLNAICPARPTDID--RLRNLRTRLSQKPFEERVRTWLLE 336

Query: 1601 GPPIHRFAALRNFAPDLSVEDTLGVLRKLARLVQGLWVPKSSLL--NAEGMEELARDYVL 1428
            GPPIHRF  L++ APD  V++ L VL+  A+LVQGLWV KSSL+     G+E LAR++VL
Sbjct: 337  GPPIHRFDTLKHLAPDNPVDEILEVLKSCAQLVQGLWVAKSSLVYDTNNGVEVLARNFVL 396

Query: 1427 LRFSSSPVIHNSQLPPTSDLVTAMRNVLNILAFPRPKLGDWKFKEPPDISFMKLHPNIVX 1248
              F+ S +I  S      + + A   VL  LA  RP L DWK KE PD  F  L+ ++V 
Sbjct: 397  YEFTKSTLIKKSVFGRRPEFLKAATPVLKSLAVERPDLDDWKLKELPDKKFENLYGDVVR 456

Query: 1247 XXXXXXXXXXKQITNYIFRGRDKLALKNPSKSVTANNSAILKXXXXXXXXXXXXXXXXXX 1068
                      KQI + +  GR++  LKNP     AN  A+                    
Sbjct: 457  EQEAIWESMGKQINDIMHGGRNRPTLKNPLNP-KANIPALSSSDKPTPTTFLRTSLSE-- 513

Query: 1067 XXNETREALPKVLQKIFQDHKVCSFQQICQRLRELAVSKSYLLKGPSREAVAAANGVDAP 888
               E R ALPK LQ +F+ HKVCS  QIC+ + +         + P +  ++ A   DA 
Sbjct: 514  ---EIRGALPKALQNVFRIHKVCSLLQICELMEK---------EDPMKAIISPAGISDAL 561

Query: 887  VEELQAVIGQVAINIHGVYVAKSSSDHPDCDAFRKVVIDLLIAEGPNAKLKKASIVEAAK 708
             +E++AV+ Q+A+NIHGVYV KSS D+P  DA RKVVIDL +AEG NAKLKKASIVEAAK
Sbjct: 562  RKEIEAVVNQIAVNIHGVYVLKSSPDNPQYDALRKVVIDLFMAEGSNAKLKKASIVEAAK 621

Query: 707  LQLGKSDIGDAEYQKVLKEICVSTKGSCWVLKSGDGNPR 591
            LQLG+ D+   E+QKV+KE+C S + S WVL   D NP+
Sbjct: 622  LQLGR-DVTTVEFQKVMKELCRS-ENSAWVLGISDSNPQ 658