BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00001133
         (4325 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]                1044   0.0  
ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisom...   754   0.0  
ref|XP_004149585.1| PREDICTED: DNA topoisomerase 1-like [Cucumis...   714   0.0  
ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus ...   711   0.0  
ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis v...   696   0.0  
dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. g...   685   0.0  
dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]             683   0.0  
dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]                680   0.0  
dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]       679   0.0  
dbj|BAG31373.1| topoisomerase I [Ophiorrhiza pumila]                  671   0.0  
dbj|BAK32959.1| topoisomerase I [Ophiorrhiza plumbea]                 669   0.0  
dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35]                  668   0.0  
dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa]                  668   0.0  
dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana]               666   0.0  
dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis]             665   0.0  
dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]               657   0.0  
dbj|BAK32957.1| topoisomerase I [Ophiorrhiza harrisiana]              656   0.0  
ref|XP_006279978.1| hypothetical protein CARUB_v10025848mg [Caps...   647   0.0  
gb|AAD08711.1| topoisomerase I [Nicotiana tabacum] gi|14626487|g...   645   0.0  
ref|NP_200342.1| DNA topoisomerase 1 beta [Arabidopsis thaliana]...   644   0.0  

>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
          Length = 910

 Score = 1044 bits (2700), Expect = 0.0
 Identities = 544/749 (72%), Positives = 567/749 (75%), Gaps = 15/749 (2%)
 Frame = +3

Query: 2124 MAVEACPTPNLRDDMDEDDEPLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISDVR 2303
            MAVEACPTPNLRDDMDEDDEP+VFKR            ETRKVSSQKRDGQS RQI D R
Sbjct: 1    MAVEACPTPNLRDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDSR 60

Query: 2304 PANGESSSGQKGRMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETD--- 2474
            PANGESSSGQKGRM   SKPSQ                                      
Sbjct: 61   PANGESSSGQKGRMVPPSKPSQVKSPLSSPPSKPSQVKSPLSSPKVSTSSAKKSPVSSLP 120

Query: 2475 -----------KVKPINQQKSATVIKEEKSSPLRSAFEANDDSEDSDDGKPLRLRLSAAL 2621
                       KVKP NQ KSATVIKEEKSSPLR A    +DSEDSDDGKPL LR SA+ 
Sbjct: 121  ANSKPSTSGSFKVKPFNQHKSATVIKEEKSSPLRLASAIINDSEDSDDGKPLSLRHSASS 180

Query: 2622 SKGNTSQVSKEGSKPENEDSDDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNG 2801
            SKGNT+QVSKEGSKPENEDSDDEKPL++RFPLKSG GESTSK+YDSDDD+PLAKKLQ NG
Sbjct: 181  SKGNTNQVSKEGSKPENEDSDDEKPLSSRFPLKSGVGESTSKAYDSDDDKPLAKKLQHNG 240

Query: 2802 STLRGGQTNKSSNMSNKRPSGEVKSSNQSSVKKPKLSSASSLTNKKQAPVKAEPKAEGDD 2981
            S +R GQ NK SNMSNKRP G++KSSNQ SVKKPKLSS ++ TNKKQA VK EPKAE DD
Sbjct: 241  SAMRDGQPNKYSNMSNKRPPGDIKSSNQLSVKKPKLSSVTAPTNKKQASVKPEPKAEDDD 300

Query: 2982 D-HLPISQRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 3158
            D HLPISQRI                                                  
Sbjct: 301  DDHLPISQRIKKSPTSESKSSSIKKTTKVVSSSVKKVNKKSKKVMKNSKYSKSSKVPPSS 360

Query: 3159 XXXXXWNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVATMFAVMLDTDYMNKPR 3338
                 WN L+H GVIFPPPY+PHG+KMLYKG+PVDLTPEQEEVATMFAVMLDTDYMNKPR
Sbjct: 361  GEGKKWNKLEHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMNKPR 420

Query: 3339 FKENFFSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXXXXXXXXXXXXXXXXX 3518
            FKENFF DWKKILGKNHVIQNLE+CDF+PIYEWHQ                         
Sbjct: 421  FKENFFGDWKKILGKNHVIQNLENCDFSPIYEWHQSEKEKKKQMTTEEKKALKEEKLKQE 480

Query: 3519 DKYMWAYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPEC 3698
            +KYMWA+VDGK+EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRP DITINIGKDAPIPEC
Sbjct: 481  EKYMWAWVDGKKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPCDITINIGKDAPIPEC 540

Query: 3699 PVPGERWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDY 3878
            PVPGERWKE+RHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKG SDKEKYEKARLLKDY
Sbjct: 541  PVPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGLSDKEKYEKARLLKDY 600

Query: 3879 IHGIRAAYTKDFASKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEP 4058
            I GIRAAYTKDFASKDP KKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEP
Sbjct: 601  IQGIRAAYTKDFASKDPTKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEP 660

Query: 4059 VPPNILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKE 4238
            VPPNILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGS DLFD LDTSKLNAHLKE
Sbjct: 661  VPPNILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSSDLFDLLDTSKLNAHLKE 720

Query: 4239 LMPGLTAKVFRTYNASITLDDMLSRATNG 4325
            LMPGLTAKVFRTYNASITLDDMLSR T G
Sbjct: 721  LMPGLTAKVFRTYNASITLDDMLSRETKG 749


>ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 1-like [Solanum
            tuberosum]
          Length = 905

 Score =  754 bits (1947), Expect = 0.0
 Identities = 412/764 (53%), Positives = 480/764 (62%), Gaps = 30/764 (3%)
 Frame = +3

Query: 2124 MAVEACPTPNLRDDMDEDDE-PLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISDV 2300
            MAVEA    NL +D+D+DD+ PLVFKR                 SSQK+DG+S RQ+ DV
Sbjct: 1    MAVEAFAKTNLMEDIDDDDDMPLVFKRSSTTSKQ-----NQSNSSSQKQDGRSGRQVPDV 55

Query: 2301 RPANGES----------SSGQKGRMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXX 2450
            R  NG+S          SS     +  L+ P                             
Sbjct: 56   RSPNGQSSSTHKVKTAASSKASPAVSPLTSPKAAPLSSRTSPAPNFRTSPAPNSRTPPAP 115

Query: 2451 XXXXXETDKVKP----------INQQKSATVIKEEKSSPLRSAFEANDDSEDSDDGKPLR 2600
                      +P          +NQQ +  +  +E    +    E ND++EDS+D KPL 
Sbjct: 116  NSRTSPAPNSRPSSSAGNQAKNVNQQSN--IAPKESKQAIEPKSEPNDEAEDSEDDKPLS 173

Query: 2601 LRLSAALSKGN---------TSQVSKEGSKPENEDSDDEKPLATRFPLKSGAGESTSKSY 2753
             R+ + LSK N         TS   ++   P+ EDSDDE PLA+RF +KS AG STSK  
Sbjct: 174  ARVPSGLSKSNSIHANNVLGTSTSVQKSRPPKKEDSDDEIPLASRFQMKSSAGASTSKFS 233

Query: 2754 DSDDDEPLAKKLQQNGSTLRGGQTNKSSNMSNKRPSGEVKSSNQSSVKKPKLSSASSLTN 2933
             S++ +P   K++QNG          S+ + +KRP GEV    +  +K         L  
Sbjct: 234  SSEEVKP---KIRQNGLP--------SATVLSKRPPGEVSLLLRLQLKSLDFLMHLHLFL 282

Query: 2934 KKQAPVKAEPKAEGDDDHLPISQRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 3113
                 VK E K E DDD +P+SQRI                                   
Sbjct: 283  VSNXSVKTEKKTEDDDDEVPLSQRIKKAVASASASASKVSSVKKATKVVSSSMKKTKKKL 342

Query: 3114 XXXXXXXXXXXXXXXXXXXXWNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVAT 3293
                                W TL+H GVIFPPPY+PHGVKMLYKG+PVDLTPEQEEVAT
Sbjct: 343  KKPKYSKSSKLQPSSGDGQKWTTLEHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVAT 402

Query: 3294 MFAVMLDTDYMNKPRFKENFFSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXX 3473
            M+AVMLDT+Y+ K +FKENF +DW+KILGKNHVIQ LE+C+FTPIYEWHQ          
Sbjct: 403  MYAVMLDTEYLTKQQFKENFMNDWRKILGKNHVIQKLEECNFTPIYEWHQSEKEKKKQMS 462

Query: 3474 XXXXXXXXXXXXXXXDKYMWAYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPS 3653
                           +KYMWA VDG +EKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP+
Sbjct: 463  SEEKKALREEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPN 522

Query: 3654 DITINIGKDAPIPECPVPGERWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQ 3833
            DITINIGK  P+PECP+PG+RWKE+RHDNTVTWLAFWNDPINP+EFKYVFLAASS+LKGQ
Sbjct: 523  DITINIGKGVPVPECPIPGQRWKEVRHDNTVTWLAFWNDPINPREFKYVFLAASSSLKGQ 582

Query: 3834 SDKEKYEKARLLKDYIHGIRAAYTKDFASKDPMKKQIAVATYLIDKLALRAGNEKDDDEA 4013
            SDKEKYEKAR LKDYI GIR+AYTKDF SKDP+K+QIAVATYLIDKLALRAGNEKDDDEA
Sbjct: 583  SDKEKYEKARRLKDYIEGIRSAYTKDFTSKDPVKRQIAVATYLIDKLALRAGNEKDDDEA 642

Query: 4014 DTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDL 4193
            DTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEV V   VFKAIQQFRSGK+G +DL
Sbjct: 643  DTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVAVYEPVFKAIQQFRSGKKGGDDL 702

Query: 4194 FDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSRATNG 4325
            FD+LDTSKLNAHLKELMPGLTAKVFRTYNAS TL+  L++ T G
Sbjct: 703  FDKLDTSKLNAHLKELMPGLTAKVFRTYNASFTLEQQLTKLTQG 746


>ref|XP_004149585.1| PREDICTED: DNA topoisomerase 1-like [Cucumis sativus]
            gi|449503189|ref|XP_004161878.1| PREDICTED: DNA
            topoisomerase 1-like [Cucumis sativus]
          Length = 889

 Score =  714 bits (1842), Expect = 0.0
 Identities = 398/741 (53%), Positives = 470/741 (63%), Gaps = 9/741 (1%)
 Frame = +3

Query: 2124 MAVEACPTPNLRDDMDEDDEPLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISDVR 2303
            MAVE      + DD DED+ P+VFKR            E +   +Q+      RQ SD+ 
Sbjct: 1    MAVETFGKAPMFDDDDEDNMPIVFKRTSASRQNQLDS-EIKHSQAQRLSKLPGRQGSDLC 59

Query: 2304 PANGESSSGQKGRMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDKVK 2483
              NG+SS+ QK RM  L K S                                   D   
Sbjct: 60   STNGQSSNNQK-RMTSLPKTSPMRSEIGSQKASRSSPIPEPLTKSLGTSLKASHSMD--- 115

Query: 2484 PINQQKSAT--VIKEEKSSPLRSAFEANDDSEDSDDGKPLRLRLSA---ALSKGNTSQVS 2648
              ++ KS    V+KEE  S        + ++ DS+D KPL +RL       +KG  S V 
Sbjct: 116  --SRPKSLVNAVVKEENVS-----INPSQENSDSEDDKPLSIRLKGNPNQPNKGLVSTVP 168

Query: 2649 KEGSKPENEDSDDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNGSTLRGGQTN 2828
            K   K    DSDDE PL+++F +K  +G   SK +  D+ +PL  K+ QNGST R  +  
Sbjct: 169  KNKVKKSLADSDDEVPLSSKFQMKHASGVLGSKQHGFDEKKPLVPKVHQNGSTSRD-KLQ 227

Query: 2829 KSSNMSNKRP--SGEVKSSNQSSVKKPKLSSASSLTNKKQAPVKAEPKA--EGDDDHLPI 2996
            K + +S+KRP  + +  S +Q   KKPKL+ +SS  N K   +KA+ +   + DD  +  
Sbjct: 228  KPAVLSSKRPLPNEDSHSPSQFPTKKPKLTDSSSPLNSKLVSLKAKQEVDDDDDDIPISQ 287

Query: 2997 SQRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXW 3176
              +                                                        W
Sbjct: 288  RMKKVSATVNKSSSSKPTISKVVSSSIKKTFKKSKKPVKKSKYVKSTKLLPSAGDGQKKW 347

Query: 3177 NTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENFF 3356
             TL H GVIFPPPYQ HGVKMLYKG+PVDLTP QEEVATMFAVM DTDYM KP+FKENF+
Sbjct: 348  TTLVHNGVIFPPPYQTHGVKMLYKGKPVDLTPPQEEVATMFAVMKDTDYMLKPKFKENFW 407

Query: 3357 SDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXXXXXXXXXXXXXXXXXDKYMWA 3536
            +DW+K+LGKNHVIQNL+DCDFTPIY+W+Q                         +KYMWA
Sbjct: 408  NDWRKLLGKNHVIQNLDDCDFTPIYDWYQMEKEKKKQMTTEEKKAVKEEKLKQEEKYMWA 467

Query: 3537 YVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPECPVPGER 3716
             +DG +EKVGNFRVEPPGLFRGRGEHPKMGKLK+RI PSDITINIGK APIPECP+PGER
Sbjct: 468  ILDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRICPSDITINIGKGAPIPECPIPGER 527

Query: 3717 WKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRA 3896
            WKE+RHDNTVTWLAFWNDPIN KEFKYVFLAASS+LKGQSDKEKYEKAR+LKDYI  IR 
Sbjct: 528  WKEVRHDNTVTWLAFWNDPINQKEFKYVFLAASSSLKGQSDKEKYEKARMLKDYIKNIRN 587

Query: 3897 AYTKDFASKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNIL 4076
            AYTKDF SKDP ++QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV+ VPPN+L
Sbjct: 588  AYTKDFTSKDPTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKAVPPNLL 647

Query: 4077 KFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLT 4256
            +F+FLGKDSIRY+N VEVE  VFKAI QF+SGK G++DLFD+LDTSKLNAHLK+LMPGLT
Sbjct: 648  EFNFLGKDSIRYENTVEVELPVFKAITQFQSGKSGTDDLFDKLDTSKLNAHLKDLMPGLT 707

Query: 4257 AKVFRTYNASITLDDMLSRAT 4319
            AKVFRTYNASITLDDML+R T
Sbjct: 708  AKVFRTYNASITLDDMLNRGT 728


>ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus communis]
            gi|223531500|gb|EEF33331.1| DNA topoisomerase type I,
            putative [Ricinus communis]
          Length = 891

 Score =  711 bits (1836), Expect = 0.0
 Identities = 392/748 (52%), Positives = 478/748 (63%), Gaps = 14/748 (1%)
 Frame = +3

Query: 2118 LIMAVEACPTPNLRD-DMDEDDEPLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQIS 2294
            + MA  A   PN+ + D D+DD PLVFKR                    + + +  + + 
Sbjct: 1    MTMAAPATAKPNIYEYDEDDDDMPLVFKRG-----------NNSTTKQNQSNPEVKKPLL 49

Query: 2295 DVRPANGESSSGQKGRMDLLS-KPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXET 2471
              + +NG+SS+ QKG+  + S K S                                   
Sbjct: 50   SSQNSNGQSSNAQKGKSTVPSLKASPVKSPIGSPKASTSSAKASPLRSPVANSKGSSSLD 109

Query: 2472 DKVKPINQQKSATVIKEEKSSP-------LRSAFEANDDSEDSDDGKPLRLRLSAALSKG 2630
            +++K  ++Q ++ V+K+  S+        ++   ++N D EDS+D  PL  R      KG
Sbjct: 110  EQLKQASKQNASNVVKDVSSAKPEIGLKSVKHETKSNGDDEDSEDDLPLSAR-----RKG 164

Query: 2631 NTSQVSKEGSKPE---NEDSDDEK-PLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQN 2798
            NT+ VSK  + P+   +EDSDD+K PL +RFP+KS AG S +K  +  + +PL  K+QQN
Sbjct: 165  NTNNVSKVVTAPKRVKDEDSDDDKVPLCSRFPMKSTAGTSGNKPNNISEKKPLPSKVQQN 224

Query: 2799 GSTLRGGQTNKSSNMSNKRPSGEVKSSNQSSVKKPKLSSASSLTNKKQAPVKAEPKAEGD 2978
            GST +  Q  K+  +  KRP  +  SS QSS+KKPKLS+ S++T  KQA VKAE + + D
Sbjct: 225  GSTSKDKQ-QKAPLIPTKRPLDKANSSEQSSIKKPKLSAGSTITKVKQATVKAE-EDDPD 282

Query: 2979 DDHLPISQRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 3158
            D  +   ++                                                   
Sbjct: 283  DIPIAQRKKSLGSSESKLSSAKQKAIKVVSSSFKKPIKKNKKQMKNTKYSKSTKVQPSST 342

Query: 3159 XXXXXWNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVATMFAVMLDTDYMNKPR 3338
                 W TL H GVIFPPPY+PHG+K+LYKG+PVDL PEQEEVATMFAVM DTDYM KP+
Sbjct: 343  DGQKKWTTLIHNGVIFPPPYKPHGIKILYKGRPVDLAPEQEEVATMFAVMKDTDYMQKPK 402

Query: 3339 FKENFFSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXXXXXXXXXXXXXXXXX 3518
            F ENF++DW+K+LG+NHVIQ LEDCDFTPIYEWH+                         
Sbjct: 403  FLENFWNDWRKLLGRNHVIQKLEDCDFTPIYEWHEREKEKKKQMSTEEKKAQKEEKLRQE 462

Query: 3519 DKYMWAYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPEC 3698
            +KYMWA VDG +EKVGNFRVEPP LFRGRGEHPKMGKLKKRI+PSDITINIGKDAPIPEC
Sbjct: 463  EKYMWAIVDGVKEKVGNFRVEPPALFRGRGEHPKMGKLKKRIQPSDITINIGKDAPIPEC 522

Query: 3699 PVPGERWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDY 3878
            P+PGE WKE++HDNTVTWLAFWNDPINPKEFKYVFLAASS+LKGQSDKEKYEKAR LKDY
Sbjct: 523  PIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDY 582

Query: 3879 IHGIRAAYTKDFASKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEP 4058
            IH IRAAY KD  SKD  KKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE 
Sbjct: 583  IHNIRAAYQKDLRSKDITKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVANVEC 642

Query: 4059 VPPNI-LKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLK 4235
            +P +  LKFDFLGKDSIRY+N VEV+  V++AI  F+ GK+ ++DLFD+LDT+KLNAHLK
Sbjct: 643  IPGSFNLKFDFLGKDSIRYENTVEVKPEVYEAIGTFQKGKKQTDDLFDKLDTTKLNAHLK 702

Query: 4236 ELMPGLTAKVFRTYNASITLDDMLSRAT 4319
            ELMPGLTAKVFRTYNASITLD+ L   T
Sbjct: 703  ELMPGLTAKVFRTYNASITLDEKLYEET 730


>ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 883

 Score =  696 bits (1796), Expect = 0.0
 Identities = 365/624 (58%), Positives = 417/624 (66%), Gaps = 25/624 (4%)
 Frame = +3

Query: 2529 SSPLRSAFEANDDSEDSDDGKPLRLRLSAALSKGNTS-------------------QVSK 2651
            S P  +     + S+DS+D  PL L+L     KG +S                   Q +K
Sbjct: 101  SHPPETKVGVKESSDDSEDEIPLLLKLQLKSRKGASSSKLLDSKGLSSPASSRPQSQKAK 160

Query: 2652 EGSKPENEDSDDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNGSTLRGGQTNK 2831
              +K  ++DS+DE PL+++F LK+G G S  K  + D+ +PL   L+ NG + +  +  K
Sbjct: 161  VNNKNLSDDSEDEIPLSSKFRLKTGMGASLDKLDNFDEKKPLTSTLKPNGISKKDDERVK 220

Query: 2832 SSNMSNKRPSGEVKSSNQSSVKKPKLSSASSLTNKKQAPVKAEPKAEGDDD------HLP 2993
            S    NKRP G+  +S+ SS KKPKL   S     KQ  VKAE K + DDD      + P
Sbjct: 221  SPKGQNKRPLGQANTSHHSSSKKPKLLDGSVKGKVKQVSVKAEQKDDDDDDNDDDDEYTP 280

Query: 2994 ISQRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 3173
              +R+                                                       
Sbjct: 281  TVKRLKKSVSSDNKKASKTKVIPSSRKKATKKAKKSKKLAKSSKYSKSTKVPPNSGEGQK 340

Query: 3174 WNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENF 3353
            W TL+H GVIFPPPY+PHGVKMLY G+PVDLTPEQEEVATMFAVM DTDY  KPRF ENF
Sbjct: 341  WTTLEHNGVIFPPPYKPHGVKMLYNGRPVDLTPEQEEVATMFAVMKDTDYATKPRFIENF 400

Query: 3354 FSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXXXXXXXXXXXXXXXXXDKYMW 3533
             +DW+  LGKNHVI+  E CDFTPIYEWH+                         DKYMW
Sbjct: 401  MNDWRVRLGKNHVIKKFELCDFTPIYEWHEKEKEKKKQMTTEEKKALKEEKLKQEDKYMW 460

Query: 3534 AYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPECPVPGE 3713
            A VDG +EKVGNFRVEPPGLFRGRGEHPKMGKLKKRI PSDITINIGK+AP+PECP+PGE
Sbjct: 461  AVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRICPSDITINIGKEAPVPECPIPGE 520

Query: 3714 RWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 3893
            RWKE+RHDNTVTWLAFWNDPINPKEFKYVFLAASS+LKGQSDKEKYEKARLLKDYI  IR
Sbjct: 521  RWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIR 580

Query: 3894 AAYTKDFASKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNI 4073
            A YTKDF +KD MK+QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV  VPPN 
Sbjct: 581  ATYTKDFTNKDTMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVALVPPNK 640

Query: 4074 LKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGL 4253
            L+FDFLGKDSIRY N VEVE  V+KAI QF++GK G +DLFD+LDTSKLNAHLKELMPGL
Sbjct: 641  LEFDFLGKDSIRYFNTVEVELPVYKAIGQFKTGKSGGDDLFDKLDTSKLNAHLKELMPGL 700

Query: 4254 TAKVFRTYNASITLDDMLSRATNG 4325
            TAKVFRTYNASITLD+ML+R   G
Sbjct: 701  TAKVFRTYNASITLDEMLNREARG 724



 Score = 66.6 bits (161), Expect = 9e-08
 Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 20/170 (11%)
 Frame = +3

Query: 2556 ANDDSEDSDDGKPLRLRLSAALSKGNT------------SQVSKEGSKPENEDSDDEKPL 2699
            AN +SEDS+D KPL  +LSA L KGN+            SQ +K   K  + DS+DE PL
Sbjct: 12   ANGESEDSEDDKPLSAKLSARLPKGNSHVLKGLSSPVLQSQKTKVDVKKSDGDSEDEVPL 71

Query: 2700 ATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNGSTLRGGQTNKSSNMSNKRP------- 2858
            +++FPLK+    S+ KS  S      +  L  +    + G    S +  ++ P       
Sbjct: 72   SSKFPLKTYVRSSSGKSLGSKGLN--SPSLSSHPPETKVGVKESSDDSEDEIPLLLKLQL 129

Query: 2859 -SGEVKSSNQSSVKKPKLSSASSLTNKKQAPVKAEPKAEGDDDHLPISQR 3005
             S +  SS++    K   S ASS    ++A V  +  ++  +D +P+S +
Sbjct: 130  KSRKGASSSKLLDSKGLSSPASSRPQSQKAKVNNKNLSDDSEDEIPLSSK 179


>dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. glabra]
          Length = 920

 Score =  685 bits (1768), Expect = 0.0
 Identities = 333/385 (86%), Positives = 345/385 (89%), Gaps = 1/385 (0%)
 Frame = +3

Query: 3174 WNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENF 3353
            W TL H GVIFPPPY+PHGVKMLYK QP+ LTPEQEEVATMFAVMLDTDYMNKPRFKENF
Sbjct: 383  WTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPRFKENF 442

Query: 3354 FSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXXXXXXXXXXXXXXXXXDKYMW 3533
            FSDWKK+LGKNH IQNLEDCDF PIYEWHQ                         +KYMW
Sbjct: 443  FSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKLQQEEKYMW 502

Query: 3534 AYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPECPVPGE 3713
            A VDG +EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRP DITINIGKDAPIPECP+PGE
Sbjct: 503  AIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGE 562

Query: 3714 RWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 3893
            RWKE+R+DNTVTWLA+WNDPIN KEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR
Sbjct: 563  RWKEVRNDNTVTWLAYWNDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 622

Query: 3894 AAYTKDFA-SKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 4070
            AAYTKDF  +KDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN
Sbjct: 623  AAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 682

Query: 4071 ILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 4250
            ILKFDFLGKDSIRYQNEV+VE AVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG
Sbjct: 683  ILKFDFLGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 742

Query: 4251 LTAKVFRTYNASITLDDMLSRATNG 4325
            LTAKVFRTYNASITLDDMLS+ TNG
Sbjct: 743  LTAKVFRTYNASITLDDMLSKKTNG 767



 Score =  238 bits (606), Expect = 2e-59
 Identities = 140/303 (46%), Positives = 173/303 (57%), Gaps = 9/303 (2%)
 Frame = +3

Query: 2124 MAVEACPTPNLRDDMDEDDEPLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISDVR 2303
            MAVEAC T NL +DM++D+ P++FKR            E +K+S Q+  GQSA   SDVR
Sbjct: 1    MAVEACTTTNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQRHVGQSAVHTSDVR 60

Query: 2304 PANGESSSGQKGRMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDKVK 2483
            PANGE+SS QKGR+   +K                                    T   K
Sbjct: 61   PANGENSSAQKGRIQPSAKTPPVKSPLSSPKASNSSAKASPITSAGANSKPSASATSTAK 120

Query: 2484 PINQQKSATVIKEEKSSPLRSAFEANDDSEDSDDGKPLRLRLSAALSKGNTSQVSKEGSK 2663
              N  KS+    E K  P   A +AN +SE SDD KPL  R     SKG ++  +KEG  
Sbjct: 121  QQNHHKSSAAFIEPK--PSVPAAKANSNSESSDDEKPLSARTFGCSSKGKSNHANKEGGD 178

Query: 2664 P---------ENEDSDDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNGSTLRG 2816
                      E+EDS+DEKPL+ RF  KS  GESTSKSYDSD+ +PLA K+Q NGS  R 
Sbjct: 179  SCSIRRPVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQPNGSASRD 238

Query: 2817 GQTNKSSNMSNKRPSGEVKSSNQSSVKKPKLSSASSLTNKKQAPVKAEPKAEGDDDHLPI 2996
               NKS+++SNKRP GEVKS NQSS+KKPKLSS  +  + KQA VK EPKAE DDD++P+
Sbjct: 239  SPMNKSASLSNKRPPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPL 298

Query: 2997 SQR 3005
            SQR
Sbjct: 299  SQR 301


>dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]
          Length = 920

 Score =  683 bits (1763), Expect = 0.0
 Identities = 332/385 (86%), Positives = 344/385 (89%), Gaps = 1/385 (0%)
 Frame = +3

Query: 3174 WNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENF 3353
            W TL H GVIFPPPY+PHGVKMLYK QP+ LTPEQEEVATMFAVMLDTDYMNKPRFKENF
Sbjct: 383  WTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPRFKENF 442

Query: 3354 FSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXXXXXXXXXXXXXXXXXDKYMW 3533
            FSDWKK+LGKNH IQNLEDCDF PIYEWHQ                         +KYMW
Sbjct: 443  FSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKLQQEEKYMW 502

Query: 3534 AYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPECPVPGE 3713
            A VDG +EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRP DITINIGKDAPIPECP+PGE
Sbjct: 503  AIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGE 562

Query: 3714 RWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 3893
            RWKE+R+DNTVTWLA+WNDPIN KEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR
Sbjct: 563  RWKEVRNDNTVTWLAYWNDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 622

Query: 3894 AAYTKDFA-SKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 4070
            AAYTKDF  +KDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN
Sbjct: 623  AAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 682

Query: 4071 ILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 4250
            ILKFDFLGKDSIRYQNEV+VE AVFKAI QFRSGKEGSEDLFDRLDTSKLNAHLKELMPG
Sbjct: 683  ILKFDFLGKDSIRYQNEVQVEPAVFKAIHQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 742

Query: 4251 LTAKVFRTYNASITLDDMLSRATNG 4325
            LTAKVFRTYNASITLDDMLS+ TNG
Sbjct: 743  LTAKVFRTYNASITLDDMLSKKTNG 767



 Score =  239 bits (609), Expect = 1e-59
 Identities = 141/303 (46%), Positives = 173/303 (57%), Gaps = 9/303 (2%)
 Frame = +3

Query: 2124 MAVEACPTPNLRDDMDEDDEPLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISDVR 2303
            MAVEAC T NL +DM++D+ P++FKR            E +K+S QK  GQSA   SDVR
Sbjct: 1    MAVEACTTTNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 60

Query: 2304 PANGESSSGQKGRMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDKVK 2483
            PANGE+SS QKGR+   +K                                    T   K
Sbjct: 61   PANGENSSAQKGRIQPSAKTPPVKSPLSSPKASNSSAKASPITSPGANSKPSASATSTAK 120

Query: 2484 PINQQKSATVIKEEKSSPLRSAFEANDDSEDSDDGKPLRLRLSAALSKGNTSQVSKEGSK 2663
              N  KS+    E K  P   A +AN +SE SDD KPL  R     SKG ++  +KEG  
Sbjct: 121  QQNHHKSSAAFIEPK--PSVPAAKANSNSESSDDEKPLSARTFGCSSKGKSNHANKEGGD 178

Query: 2664 P---------ENEDSDDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNGSTLRG 2816
                      E+EDS+DEKPL+ RF  KS  GESTSKSYDSD+ +PLA K+Q NGS  R 
Sbjct: 179  SCSIRRPVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQPNGSASRD 238

Query: 2817 GQTNKSSNMSNKRPSGEVKSSNQSSVKKPKLSSASSLTNKKQAPVKAEPKAEGDDDHLPI 2996
               NKS+++SNKRP GEVKS NQSS+KKPKLSS  +  + KQA VK EPKAE DDD++P+
Sbjct: 239  SPMNKSASLSNKRPPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPL 298

Query: 2997 SQR 3005
            SQR
Sbjct: 299  SQR 301


>dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]
          Length = 927

 Score =  680 bits (1755), Expect = 0.0
 Identities = 332/385 (86%), Positives = 342/385 (88%), Gaps = 1/385 (0%)
 Frame = +3

Query: 3174 WNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENF 3353
            W TL H GVIFPPPY PHGVKMLYK QP+ LTPEQEEVATMFAVMLDTDYMNKPRFKENF
Sbjct: 384  WTTLVHNGVIFPPPYNPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPRFKENF 443

Query: 3354 FSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXXXXXXXXXXXXXXXXXDKYMW 3533
            FSDWKK+LGKNH IQNLEDCDF PIYEWHQ                         +KYMW
Sbjct: 444  FSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEDKLQQEEKYMW 503

Query: 3534 AYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPECPVPGE 3713
            A VDG +EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRP DITINIGKDAPIPECP+PGE
Sbjct: 504  AIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGE 563

Query: 3714 RWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 3893
            RWKE+R+DNTVTWLAFW DPIN KEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR
Sbjct: 564  RWKEVRNDNTVTWLAFWIDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 623

Query: 3894 AAYTKDFA-SKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 4070
            AAYTKDF  +KDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN
Sbjct: 624  AAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 683

Query: 4071 ILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 4250
            ILKFDFLGKDSIRYQNEV+VE AVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG
Sbjct: 684  ILKFDFLGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 743

Query: 4251 LTAKVFRTYNASITLDDMLSRATNG 4325
            LTAKVFRTYNASITLDDMLS+ T G
Sbjct: 744  LTAKVFRTYNASITLDDMLSKETKG 768



 Score =  239 bits (611), Expect = 6e-60
 Identities = 146/305 (47%), Positives = 176/305 (57%), Gaps = 11/305 (3%)
 Frame = +3

Query: 2124 MAVEACPTPNLRDDMDEDDEPLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISDVR 2303
            MAVEAC TPNL +DM++D+ P++FKR            E +K+S QK  GQSA   SDVR
Sbjct: 1    MAVEAC-TPNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 59

Query: 2304 PANGESSSGQKGRMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDKVK 2483
            PANGESSS QKGR+   +K                                    T   K
Sbjct: 60   PANGESSSAQKGRIQPSAKTPPVKSPLSSPKASNSSAKASPITSPGANSKPSASATSTAK 119

Query: 2484 PINQQKSATVIKEEKSSPLRSAFEANDDSEDSDDGKPLRLRLSAALSKGNTSQVSKEGSK 2663
              N  KS+    E K  P   A +AN +SE SDD KPL  R     SKG ++  +KEG  
Sbjct: 120  QQNHHKSSAAFIEPK--PSVPAAKANSNSESSDDEKPLSARTFGCSSKGKSNHANKEGGD 177

Query: 2664 P---------ENEDSDDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNGSTLRG 2816
                      E+EDS+DEKPL+ RF  KS  GESTSKSYDSD+ +PLA K+QQNGS  R 
Sbjct: 178  SCSIRRRVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQQNGSVSRD 237

Query: 2817 GQTNKSSNMSNKRPSGEVKSSNQSSVKKPKLSSASSLTNKKQAPVK--AEPKAEGDDDHL 2990
            G  NKS+++SNKRP GEVKS NQSSVKKPKLSS  +  + KQA VK   EPKAE DDD++
Sbjct: 238  GPMNKSASLSNKRPPGEVKSLNQSSVKKPKLSSPITSISNKQAAVKPEPEPKAEDDDDNI 297

Query: 2991 PISQR 3005
            P+SQR
Sbjct: 298  PLSQR 302


>dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]
          Length = 925

 Score =  679 bits (1751), Expect = 0.0
 Identities = 331/385 (85%), Positives = 343/385 (89%), Gaps = 1/385 (0%)
 Frame = +3

Query: 3174 WNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENF 3353
            W TL H GVIFPPPY+PHGVKMLYK QP+ LTPEQEEVATMFAVMLDTDYMNKP FKENF
Sbjct: 382  WTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPCFKENF 441

Query: 3354 FSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXXXXXXXXXXXXXXXXXDKYMW 3533
            FSDWKKILGKNH+IQNLEDCDF PIYEWHQ                         +KYMW
Sbjct: 442  FSDWKKILGKNHMIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKLQQEEKYMW 501

Query: 3534 AYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPECPVPGE 3713
            A VDG +EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRP DITINIGKDAPIPECP+PGE
Sbjct: 502  AIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGE 561

Query: 3714 RWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 3893
            RWKE+R+ NTVTWLA+WNDPIN KEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR
Sbjct: 562  RWKEVRNGNTVTWLAYWNDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 621

Query: 3894 AAYTKDFA-SKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 4070
            AAYTKDF  +KDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN
Sbjct: 622  AAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 681

Query: 4071 ILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 4250
            ILKFDFLGKDSIRYQNEV+VE AVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG
Sbjct: 682  ILKFDFLGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 741

Query: 4251 LTAKVFRTYNASITLDDMLSRATNG 4325
            LTAKVFRTYNASITLDDMLS+ T G
Sbjct: 742  LTAKVFRTYNASITLDDMLSKETKG 766



 Score =  243 bits (619), Expect = 7e-61
 Identities = 145/303 (47%), Positives = 175/303 (57%), Gaps = 9/303 (2%)
 Frame = +3

Query: 2124 MAVEACPTPNLRDDMDEDDEPLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISDVR 2303
            MAVEAC T NL +DM++D  P++FKR            E +K+S QK+DGQSA   SDVR
Sbjct: 1    MAVEACTT-NLMEDMEDDGGPVIFKRSKPAPKQNQANSEKKKLSLQKQDGQSAVHTSDVR 59

Query: 2304 PANGESSSGQKGRMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDKVK 2483
            PANGESSS QKGR+   +K                                    T   K
Sbjct: 60   PANGESSSAQKGRIQPSAKTPPVKSPLSSPKASNSSAKASPITSPGANSKPSASATSTAK 119

Query: 2484 PINQQKSATVIKEEKSSPLRSAFEANDDSEDSDDGKPLRLRLSAALSKGNTSQVSKEGSK 2663
              N  KS+    E K  P   A +AN +SE SDD KPL  R     SKG ++  +KEG  
Sbjct: 120  QQNHHKSSAAFIEPK--PSVPAAKANSNSESSDDEKPLSARTFGCSSKGKSNHANKEGGD 177

Query: 2664 P---------ENEDSDDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNGSTLRG 2816
                      E+EDS+DEKPL+ RF  KS  GESTSKSYDSD+ +PLA K+QQNGS  R 
Sbjct: 178  SCSIRRPVIEESEDSEDEKPLSCRFTSKSSLGESTSKSYDSDEKKPLAAKVQQNGSASRD 237

Query: 2817 GQTNKSSNMSNKRPSGEVKSSNQSSVKKPKLSSASSLTNKKQAPVKAEPKAEGDDDHLPI 2996
            G  NKS+++SNKRP GE KS NQSSVKKPKLSS  +  + KQA VK EPKAE DDD++P+
Sbjct: 238  GPMNKSASLSNKRPPGEAKSLNQSSVKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPL 297

Query: 2997 SQR 3005
            SQR
Sbjct: 298  SQR 300


>dbj|BAG31373.1| topoisomerase I [Ophiorrhiza pumila]
          Length = 926

 Score =  671 bits (1732), Expect = 0.0
 Identities = 325/385 (84%), Positives = 341/385 (88%), Gaps = 1/385 (0%)
 Frame = +3

Query: 3174 WNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENF 3353
            W TL H GV+FPPPY+PHGVKMLYK QP+ LTPEQEEVATMFA MLDTDYMNKPRFKENF
Sbjct: 383  WTTLVHNGVMFPPPYKPHGVKMLYKRQPLTLTPEQEEVATMFAAMLDTDYMNKPRFKENF 442

Query: 3354 FSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXXXXXXXXXXXXXXXXXDKYMW 3533
            FSDWKKILGKNH IQNLEDCDF PIYEWHQ                         +KYMW
Sbjct: 443  FSDWKKILGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEERLQLEEKYMW 502

Query: 3534 AYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPECPVPGE 3713
            A VDG +EKVGNFRVEPPGLFRGRGEHPK+GKLKKRIRP DITINIGKDAPIPECP+PGE
Sbjct: 503  AIVDGVKEKVGNFRVEPPGLFRGRGEHPKVGKLKKRIRPRDITINIGKDAPIPECPIPGE 562

Query: 3714 RWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 3893
            RWKE+R+DNTVTWLA+WNDP+N KE KYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR
Sbjct: 563  RWKEVRNDNTVTWLAYWNDPVNLKECKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 622

Query: 3894 AAYTKDFA-SKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 4070
            AAYTKDF  +KDPMKKQ+AVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN
Sbjct: 623  AAYTKDFTNNKDPMKKQVAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 682

Query: 4071 ILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 4250
            ILK DF+GKDSIRYQNEV+VE AVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG
Sbjct: 683  ILKIDFIGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 742

Query: 4251 LTAKVFRTYNASITLDDMLSRATNG 4325
            LTAKVFRTYNASITLDDMLS+ T G
Sbjct: 743  LTAKVFRTYNASITLDDMLSKETKG 767



 Score =  246 bits (628), Expect = 6e-62
 Identities = 144/303 (47%), Positives = 177/303 (58%), Gaps = 9/303 (2%)
 Frame = +3

Query: 2124 MAVEACPTPNLRDDMDEDDEPLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISDVR 2303
            MAVEAC TPNL +DM++D+ P++FKR            E +K+S QK  GQSA   SDVR
Sbjct: 1    MAVEACTTPNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 60

Query: 2304 PANGESSSGQKGRMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDKVK 2483
            PANGESSS QKGR+   ++                                    T   K
Sbjct: 61   PANGESSSAQKGRIQPSAETPPVKSPLSSPKASNSSAKASPITSPGANSKLSASATSTAK 120

Query: 2484 PINQQKSATVIKEEKSSPLRSAFEANDDSEDSDDGKPLRLRLSAALSKGNTSQVSKEGSK 2663
              N  KS+    E K  P   A +AN +SE SDD KPL  R S   SKG ++  +KEG  
Sbjct: 121  QQNHHKSSAAFIEPK--PSVPAAKANSNSESSDDEKPLIARTSGCSSKGKSNHANKEGGD 178

Query: 2664 P---------ENEDSDDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNGSTLRG 2816
                      E+EDS+DEKPL+ RFP KS  GESTSKS+DSD+ +PLA K+QQNGS  R 
Sbjct: 179  SCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSHDSDEKKPLAAKVQQNGSASRD 238

Query: 2817 GQTNKSSNMSNKRPSGEVKSSNQSSVKKPKLSSASSLTNKKQAPVKAEPKAEGDDDHLPI 2996
            G  NKS+++SNKR  GEVKS NQSS+KKPKLSS  +  + KQA VK EPKAE DDD++P+
Sbjct: 239  GPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSTITSISNKQAAVKPEPKAEDDDDNIPL 298

Query: 2997 SQR 3005
            SQR
Sbjct: 299  SQR 301


>dbj|BAK32959.1| topoisomerase I [Ophiorrhiza plumbea]
          Length = 920

 Score =  669 bits (1727), Expect = 0.0
 Identities = 325/385 (84%), Positives = 339/385 (88%), Gaps = 1/385 (0%)
 Frame = +3

Query: 3174 WNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENF 3353
            W TL H GVIFPPPY+PHGVKMLYK QP+ LTPEQEEVATMFAVMLDTDYMNKPRFKENF
Sbjct: 383  WTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPRFKENF 442

Query: 3354 FSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXXXXXXXXXXXXXXXXXDKYMW 3533
            FSDWKK+LGKNH IQNLEDCDF PIYEWHQ                         +KYMW
Sbjct: 443  FSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEERLQQEEKYMW 502

Query: 3534 AYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPECPVPGE 3713
              VDG +EKVGNFRVEPPGLFRGRGEHPK+GKLKKRIRP DITINIGKDAPIPECP+PGE
Sbjct: 503  VIVDGVKEKVGNFRVEPPGLFRGRGEHPKVGKLKKRIRPRDITINIGKDAPIPECPIPGE 562

Query: 3714 RWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 3893
            RWKE+R+DNTVTWLA+WNDPIN KE KYVFL ASSTLKGQSDKEKYEKARLLKDYIHGIR
Sbjct: 563  RWKEVRNDNTVTWLAYWNDPINQKERKYVFLGASSTLKGQSDKEKYEKARLLKDYIHGIR 622

Query: 3894 AAYTKDFA-SKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 4070
            AAYTKDF  +KDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN
Sbjct: 623  AAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 682

Query: 4071 ILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 4250
            ILK DF+GKDSIRYQNEV+VE AVFKAIQQFRSGKEGS DLFDRLDTSKLNAHLKELMPG
Sbjct: 683  ILKIDFIGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSADLFDRLDTSKLNAHLKELMPG 742

Query: 4251 LTAKVFRTYNASITLDDMLSRATNG 4325
            LTAKVFRTYNASITLDDMLS+ T G
Sbjct: 743  LTAKVFRTYNASITLDDMLSKETKG 767



 Score =  245 bits (626), Expect = 1e-61
 Identities = 144/303 (47%), Positives = 176/303 (58%), Gaps = 9/303 (2%)
 Frame = +3

Query: 2124 MAVEACPTPNLRDDMDEDDEPLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISDVR 2303
            MAVEAC TPNL +DM++D+ P++FKR            E +K+S QK  GQSA   SDVR
Sbjct: 1    MAVEACTTPNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 60

Query: 2304 PANGESSSGQKGRMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDKVK 2483
            PANGESSS QKGR+   ++                                    T   K
Sbjct: 61   PANGESSSAQKGRIQPSAETPPVKSPLSSPKASNSSAKASPITSPGANSKLSASATSTAK 120

Query: 2484 PINQQKSATVIKEEKSSPLRSAFEANDDSEDSDDGKPLRLRLSAALSKGNTSQVSKEGSK 2663
              N  KS+    E K  P   A +AN +SE SDD KPL  R S   SKG ++  +KEG  
Sbjct: 121  QQNHHKSSAAFIEPK--PSVPAAKANSNSESSDDEKPLIARTSGCSSKGKSNHANKEGGD 178

Query: 2664 P---------ENEDSDDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNGSTLRG 2816
                      E+EDS+DEKPL+ RFP KS  GESTSKSYDSD+ +PLA K+Q NGS  R 
Sbjct: 179  SCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAAKVQPNGSASRD 238

Query: 2817 GQTNKSSNMSNKRPSGEVKSSNQSSVKKPKLSSASSLTNKKQAPVKAEPKAEGDDDHLPI 2996
            G  NKS+++SNKR  GEVKS NQSS+KKPKLSS  +  + KQA VK EPKAE DDD++P+
Sbjct: 239  GPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPL 298

Query: 2997 SQR 3005
            SQR
Sbjct: 299  SQR 301


>dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35]
          Length = 920

 Score =  668 bits (1724), Expect = 0.0
 Identities = 324/385 (84%), Positives = 340/385 (88%), Gaps = 1/385 (0%)
 Frame = +3

Query: 3174 WNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENF 3353
            W TL H GVIFPPPY+PHGVKMLYK QP+ LTPEQEEVATMFAVMLDTDYMNKPRFKENF
Sbjct: 383  WTTLVHNGVIFPPPYKPHGVKMLYKRQPLTLTPEQEEVATMFAVMLDTDYMNKPRFKENF 442

Query: 3354 FSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXXXXXXXXXXXXXXXXXDKYMW 3533
            FSDWKK+LGKNH IQNLEDCDF PIYEWHQ                         +KYMW
Sbjct: 443  FSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEREKKKQMTTEEKKALKDERLQQEEKYMW 502

Query: 3534 AYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPECPVPGE 3713
            A VDG +EKVGNFRVEPPGLFRGRGEHPK+GKLKKRI P DITINIGKDAPIPECP+PGE
Sbjct: 503  AIVDGVKEKVGNFRVEPPGLFRGRGEHPKVGKLKKRIHPRDITINIGKDAPIPECPIPGE 562

Query: 3714 RWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 3893
            RWKE+R+DNTVTWLA+WNDP+N KE KYVFLA SSTLKGQSDKEKYEKARLLKDYIHGIR
Sbjct: 563  RWKEVRNDNTVTWLAYWNDPVNLKECKYVFLAPSSTLKGQSDKEKYEKARLLKDYIHGIR 622

Query: 3894 AAYTKDFAS-KDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 4070
            AAYTKDF + KDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTL+VENVEPVPPN
Sbjct: 623  AAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLRVENVEPVPPN 682

Query: 4071 ILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 4250
            ILK DF+GKDSIRYQNEV+VE AVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG
Sbjct: 683  ILKIDFIGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 742

Query: 4251 LTAKVFRTYNASITLDDMLSRATNG 4325
            LTAKVFRTYNASITLDDMLS+ T G
Sbjct: 743  LTAKVFRTYNASITLDDMLSKETKG 767



 Score =  243 bits (619), Expect = 7e-61
 Identities = 143/303 (47%), Positives = 175/303 (57%), Gaps = 9/303 (2%)
 Frame = +3

Query: 2124 MAVEACPTPNLRDDMDEDDEPLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISDVR 2303
            MAVEAC T NL +DM++D+ P++FKR            E +K+S QK  GQSA   SDVR
Sbjct: 1    MAVEACTTTNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 60

Query: 2304 PANGESSSGQKGRMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDKVK 2483
            PANGESSS QKGR+   ++                                    T   K
Sbjct: 61   PANGESSSAQKGRIQPSAETPPVKSPLSSPKASNSSAKASPITSPGANSKLSASATSTAK 120

Query: 2484 PINQQKSATVIKEEKSSPLRSAFEANDDSEDSDDGKPLRLRLSAALSKGNTSQVSKEGSK 2663
              N  KS+    E K  P     +AN +SE SDD KPL  R S   SKG ++  +KEG  
Sbjct: 121  QQNHHKSSAAFIEPK--PSVPPAKANSNSESSDDEKPLIARTSGCSSKGKSNHANKEGGD 178

Query: 2664 P---------ENEDSDDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNGSTLRG 2816
                      E+EDS+DEKPL+ RFP KS  GESTSKSYDSD+ +PLA K+QQNGS  R 
Sbjct: 179  SCSIRRPVVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAAKVQQNGSASRD 238

Query: 2817 GQTNKSSNMSNKRPSGEVKSSNQSSVKKPKLSSASSLTNKKQAPVKAEPKAEGDDDHLPI 2996
            G  NKS+++SNKR  GEVKS NQSS+KKPKLSS  +  + KQA VK EPKAE DDD++P+
Sbjct: 239  GPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPL 298

Query: 2997 SQR 3005
            SQR
Sbjct: 299  SQR 301


>dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa]
          Length = 926

 Score =  668 bits (1723), Expect = 0.0
 Identities = 324/385 (84%), Positives = 339/385 (88%), Gaps = 1/385 (0%)
 Frame = +3

Query: 3174 WNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENF 3353
            W TL H GV+FPPPY+PHGVKMLYK QP+ LTPEQEEVATMFA MLDTDYMNKPRFKENF
Sbjct: 383  WTTLVHNGVMFPPPYKPHGVKMLYKRQPLTLTPEQEEVATMFAAMLDTDYMNKPRFKENF 442

Query: 3354 FSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXXXXXXXXXXXXXXXXXDKYMW 3533
            FSDWKKILGKNH IQNLEDCDF PIYEWHQ                         +KYMW
Sbjct: 443  FSDWKKILGKNHTIQNLEDCDFGPIYEWHQQEREKKKQMTTEEKKALKDERLQLEEKYMW 502

Query: 3534 AYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPECPVPGE 3713
            A VDG +EKVGNFRVEPPGLFRGRGEHPK+GKLKKRI P DITINIGKDAPIPECP+PGE
Sbjct: 503  AIVDGVKEKVGNFRVEPPGLFRGRGEHPKVGKLKKRIHPRDITINIGKDAPIPECPIPGE 562

Query: 3714 RWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 3893
            RWKE+R+DNTVTWLA+WNDP+N KE KYVFLA SSTLKGQSDKEKYEKARLLKDYIHGIR
Sbjct: 563  RWKEVRNDNTVTWLAYWNDPVNLKECKYVFLAPSSTLKGQSDKEKYEKARLLKDYIHGIR 622

Query: 3894 AAYTKDFAS-KDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 4070
            AAYTKDF + KDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN
Sbjct: 623  AAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 682

Query: 4071 ILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 4250
            ILK DF+GKDSIRYQNEV+VE AVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG
Sbjct: 683  ILKIDFIGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 742

Query: 4251 LTAKVFRTYNASITLDDMLSRATNG 4325
            LTAKVFRTYNASITLDDMLS+ T G
Sbjct: 743  LTAKVFRTYNASITLDDMLSKETKG 767



 Score =  243 bits (619), Expect = 7e-61
 Identities = 143/303 (47%), Positives = 175/303 (57%), Gaps = 9/303 (2%)
 Frame = +3

Query: 2124 MAVEACPTPNLRDDMDEDDEPLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISDVR 2303
            MAVEAC T NL +DM++D+ P++FKR            E +K+S QK  GQSA   SDVR
Sbjct: 1    MAVEACTTTNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 60

Query: 2304 PANGESSSGQKGRMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDKVK 2483
            PANGESSS QKGR+   ++                                    T   K
Sbjct: 61   PANGESSSAQKGRIQPSAETPPVKSPLSSPKASNSSAKASPITSPGANSKLSASATSTAK 120

Query: 2484 PINQQKSATVIKEEKSSPLRSAFEANDDSEDSDDGKPLRLRLSAALSKGNTSQVSKEGSK 2663
              N  KS+    E K  P     +AN +SE SDD KPL  R S   SKG ++  +KEG  
Sbjct: 121  QQNHHKSSAAFIEPK--PSVPPAKANSNSESSDDEKPLIARTSGCSSKGKSNHANKEGGD 178

Query: 2664 P---------ENEDSDDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNGSTLRG 2816
                      E+EDS+DEKPL+ RFP KS  GESTSKSYDSD+ +PLA K+QQNGS  R 
Sbjct: 179  SCSIRRPVVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAAKVQQNGSASRD 238

Query: 2817 GQTNKSSNMSNKRPSGEVKSSNQSSVKKPKLSSASSLTNKKQAPVKAEPKAEGDDDHLPI 2996
            G  NKS+++SNKR  GEVKS NQSS+KKPKLSS  +  + KQA VK EPKAE DDD++P+
Sbjct: 239  GPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPL 298

Query: 2997 SQR 3005
            SQR
Sbjct: 299  SQR 301


>dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana]
          Length = 926

 Score =  666 bits (1718), Expect = 0.0
 Identities = 324/385 (84%), Positives = 340/385 (88%), Gaps = 1/385 (0%)
 Frame = +3

Query: 3174 WNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENF 3353
            W TL H GV+FPPPY+PHGVKMLYK QP+ LTPEQEEVATMFAVMLDTDYMNKPRFKENF
Sbjct: 383  WTTLVHNGVMFPPPYKPHGVKMLYKRQPLTLTPEQEEVATMFAVMLDTDYMNKPRFKENF 442

Query: 3354 FSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXXXXXXXXXXXXXXXXXDKYMW 3533
            FSDWKKILGKNH IQNLEDCDF PIYEWHQ                         +KYMW
Sbjct: 443  FSDWKKILGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEERLQQEEKYMW 502

Query: 3534 AYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPECPVPGE 3713
            A VDG +EKVGNFRVEPPGLFRGRGEHPK+GKLKKRIRP DITINIGKDAPIPECP+PGE
Sbjct: 503  AIVDGVKEKVGNFRVEPPGLFRGRGEHPKVGKLKKRIRPRDITINIGKDAPIPECPIPGE 562

Query: 3714 RWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 3893
            RWKE+R+DNTVTWLA+WNDP+N KE KYVFLAASSTLKGQS KEKYEKAR+LKDYIHGIR
Sbjct: 563  RWKEVRNDNTVTWLAYWNDPVNIKECKYVFLAASSTLKGQSVKEKYEKARVLKDYIHGIR 622

Query: 3894 AAYTKDFAS-KDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 4070
            AAYTK F + KDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN
Sbjct: 623  AAYTKGFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 682

Query: 4071 ILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 4250
            ILK DF+GKDSIRYQNEV+VE AVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG
Sbjct: 683  ILKIDFIGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 742

Query: 4251 LTAKVFRTYNASITLDDMLSRATNG 4325
            LTAKVFRTYNASITLDDMLS+ T G
Sbjct: 743  LTAKVFRTYNASITLDDMLSKETKG 767



 Score =  239 bits (610), Expect = 8e-60
 Identities = 142/303 (46%), Positives = 174/303 (57%), Gaps = 9/303 (2%)
 Frame = +3

Query: 2124 MAVEACPTPNLRDDMDEDDEPLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISDVR 2303
            MAVEAC T NL +DM++D+ P++FKR            E +K+S QK  GQSA   SDVR
Sbjct: 1    MAVEACTTTNLMEDMEDDEGPVIFKRSNPTSKQNQANAEKKKLSLQKHVGQSAVHTSDVR 60

Query: 2304 PANGESSSGQKGRMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDKVK 2483
            PANGESSS QKGR+   ++                                    T   K
Sbjct: 61   PANGESSSAQKGRIQPSAETPPVKSPLSSPKASNSSAKASPITSPGANSKLSASATSTAK 120

Query: 2484 PINQQKSATVIKEEKSSPLRSAFEANDDSEDSDDGKPLRLRLSAALSKGNTSQVSKEGSK 2663
              N  KS+    E K  P   A +AN +SE SDD KPL  R S   S G ++  +KEG  
Sbjct: 121  QQNHHKSSAAFIEPK--PSVPAAKANSNSESSDDEKPLIARTSGCSSMGKSNHANKEGGD 178

Query: 2664 P---------ENEDSDDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNGSTLRG 2816
                      E+EDS+DEKPL+ RFP KS  GESTSKSYDSD+ +PLA K+QQNGS    
Sbjct: 179  SCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAAKVQQNGSASPE 238

Query: 2817 GQTNKSSNMSNKRPSGEVKSSNQSSVKKPKLSSASSLTNKKQAPVKAEPKAEGDDDHLPI 2996
            G  NKS+++SNKR  GEVKS NQSS+KKPKLSS  +  + KQA VK EPKAE DDD++P+
Sbjct: 239  GPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPL 298

Query: 2997 SQR 3005
            SQR
Sbjct: 299  SQR 301


>dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis]
          Length = 926

 Score =  665 bits (1717), Expect = 0.0
 Identities = 324/385 (84%), Positives = 338/385 (87%), Gaps = 1/385 (0%)
 Frame = +3

Query: 3174 WNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENF 3353
            W TL H GV+F PPY+PHGVKMLYK QP+ LTPEQEEVATMFAVMLDTDYM KPRFKENF
Sbjct: 383  WTTLVHNGVMFLPPYKPHGVKMLYKXQPLTLTPEQEEVATMFAVMLDTDYMTKPRFKENF 442

Query: 3354 FSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXXXXXXXXXXXXXXXXXDKYMW 3533
            FSDWKK+LGKNH +QNLEDCDF PIYEWHQ                         +KYMW
Sbjct: 443  FSDWKKMLGKNHTVQNLEDCDFGPIYEWHQQEKEKRKQMTTEEKKALKEERLQQEEKYMW 502

Query: 3534 AYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPECPVPGE 3713
            A VDG +EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRP DITINIGKDAPIPECP+PGE
Sbjct: 503  AIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGE 562

Query: 3714 RWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 3893
            RWKE+R+DNTVTWLAFWNDPIN KE KYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR
Sbjct: 563  RWKEVRNDNTVTWLAFWNDPINQKECKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 622

Query: 3894 AAYTKDFA-SKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 4070
            AAYTKDF  +KDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN
Sbjct: 623  AAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 682

Query: 4071 ILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 4250
            ILK DF+GKDSIRYQNEV+VE AVFKAIQQFRSGKEG  DLFDRLDTSKLNAHLKELMPG
Sbjct: 683  ILKIDFIGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGCADLFDRLDTSKLNAHLKELMPG 742

Query: 4251 LTAKVFRTYNASITLDDMLSRATNG 4325
            LTAKVFRTYNASITLDDMLS+ T G
Sbjct: 743  LTAKVFRTYNASITLDDMLSKETKG 767



 Score =  242 bits (618), Expect = 9e-61
 Identities = 143/303 (47%), Positives = 175/303 (57%), Gaps = 9/303 (2%)
 Frame = +3

Query: 2124 MAVEACPTPNLRDDMDEDDEPLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISDVR 2303
            MAVEAC TPNL +DM++D+ P++FKR            E +K+S QK  GQSA   SDVR
Sbjct: 1    MAVEACTTPNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 60

Query: 2304 PANGESSSGQKGRMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDKVK 2483
            PANGESSS QKGR+   ++                                    T   K
Sbjct: 61   PANGESSSAQKGRIQPSAETPPVKSPLSSPKASNSSAKASPITSPGANSKLSASATSTAK 120

Query: 2484 PINQQKSATVIKEEKSSPLRSAFEANDDSEDSDDGKPLRLRLSAALSKGNTSQVSKEGSK 2663
              N  KS+    E K  P   A +AN +SE SDD KPL  R S   SKG ++  +KEG  
Sbjct: 121  QQNHHKSSAAFIEPK--PSVPAAKANSNSESSDDEKPLIARTSGCSSKGKSNHANKEGGD 178

Query: 2664 P---------ENEDSDDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNGSTLRG 2816
                      E+EDS+DEKPL+ RFP KS  GESTSKSYDSD+ +PLA K+QQNGS  R 
Sbjct: 179  SCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLATKVQQNGSASRD 238

Query: 2817 GQTNKSSNMSNKRPSGEVKSSNQSSVKKPKLSSASSLTNKKQAPVKAEPKAEGDDDHLPI 2996
            G  NKS+++ NKR  GEVKS NQSS+KK KLSS  +  + KQA VK EPKAE DDD++P+
Sbjct: 239  GPMNKSASLLNKRAPGEVKSLNQSSLKKAKLSSPITSISNKQAAVKPEPKAEDDDDNIPL 298

Query: 2997 SQR 3005
            SQR
Sbjct: 299  SQR 301


>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
          Length = 894

 Score =  657 bits (1696), Expect = 0.0
 Identities = 318/384 (82%), Positives = 336/384 (87%)
 Frame = +3

Query: 3174 WNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENF 3353
            WNTL H GVIFPPPY+PHGVKMLYKG+PVDLTPEQEEVATMFAVMLDTDYM K +FKENF
Sbjct: 352  WNTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMTKSKFKENF 411

Query: 3354 FSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXXXXXXXXXXXXXXXXXDKYMW 3533
              DW+KILGKNHVIQNLEDCDFTPIYEWHQ                         +KYMW
Sbjct: 412  MDDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKKMTAEEKKVLKEERLKQEEKYMW 471

Query: 3534 AYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPECPVPGE 3713
            A V+G +EKVGNFRVEPP LFRGRGEHPKMGKLKK IRPSDITINIGKDAPIPECP+PGE
Sbjct: 472  AIVNGVKEKVGNFRVEPPSLFRGRGEHPKMGKLKKCIRPSDITINIGKDAPIPECPIPGE 531

Query: 3714 RWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 3893
             WKEIRHDNTVTWLAFWNDPI P+EFKYVFLAASS+LKGQSDKEKYEKARLLKD+I GIR
Sbjct: 532  SWKEIRHDNTVTWLAFWNDPIKPREFKYVFLAASSSLKGQSDKEKYEKARLLKDFIQGIR 591

Query: 3894 AAYTKDFASKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNI 4073
            AAYTKDFASKD  K+QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEP PP+I
Sbjct: 592  AAYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPKPPSI 651

Query: 4074 LKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGL 4253
            LKFDFLGKDSIRYQNEVEVE  V+KAIQQFR+GK G +DLFD+LDTSKLNAHLK LMPGL
Sbjct: 652  LKFDFLGKDSIRYQNEVEVELPVYKAIQQFRTGKRGGDDLFDKLDTSKLNAHLKGLMPGL 711

Query: 4254 TAKVFRTYNASITLDDMLSRATNG 4325
            TAKVFRTYNASITLD+MLSR T G
Sbjct: 712  TAKVFRTYNASITLDEMLSRETKG 735



 Score =  207 bits (527), Expect = 3e-50
 Identities = 140/310 (45%), Positives = 172/310 (55%), Gaps = 15/310 (4%)
 Frame = +3

Query: 2124 MAVEACPTPNLRDDMDEDDEPLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISDVR 2303
            MAV+AC    + D++DEDDEPLVFKR            +T+K SSQ+ DGQS RQ+SDV 
Sbjct: 1    MAVQACVKEKMMDEIDEDDEPLVFKRSNATSKHNQLNSDTKK-SSQRYDGQSGRQVSDVP 59

Query: 2304 PANGESSSGQKGRMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDKVK 2483
              NG+SSS  KG+   LS                                      D+ K
Sbjct: 60   STNGQSSSASKGKTTKLSSMKSPIASPKASTSFAKASPVANPKVSSS-------SDDRSK 112

Query: 2484 PINQQKSATVIKEEKSSPLRSAFEANDDSEDSDDGKPLRLRLSAALSKG----------N 2633
              ++Q +  V+KEEK   +  A E   DSED    KPL  RL   L+KG          N
Sbjct: 113  HSSKQNTINVVKEEKEL-VNPAAEPYGDSEDE---KPLSARLFTGLTKGSSNNANKGLIN 168

Query: 2634 TSQVSKEGSKPE----NEDSDDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNG 2801
            +S  S    KPE    ++DSDDE PL+++F LK+ AG ST KSY+SDD++ L    QQNG
Sbjct: 169  SSPASLPVPKPEINRYSDDSDDEIPLSSKFRLKANAGTSTVKSYESDDNKTLVSNFQQNG 228

Query: 2802 STLRGGQTNKSSNMSNKRPSGEVKSSNQSSVKKPKLSSASSLTNKKQAPVKAEPKA-EGD 2978
            S  RG   +KSS   NKRP GEVKSS QSSVKKPKLS AS+  N KQA  KAEPKA + D
Sbjct: 229  SINRG---SKSSIKVNKRPLGEVKSSVQSSVKKPKLSDASTPVNNKQASKKAEPKADDSD 285

Query: 2979 DDHLPISQRI 3008
            DDH+PISQR+
Sbjct: 286  DDHVPISQRM 295


>dbj|BAK32957.1| topoisomerase I [Ophiorrhiza harrisiana]
          Length = 920

 Score =  656 bits (1693), Expect = 0.0
 Identities = 320/385 (83%), Positives = 337/385 (87%), Gaps = 1/385 (0%)
 Frame = +3

Query: 3174 WNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENF 3353
            W TL H GV+F PPY+PHGVKMLYK QP+ LTPEQEEVATMFAVMLDTDYM KPRFKENF
Sbjct: 383  WTTLVHNGVMFLPPYKPHGVKMLYKQQPLTLTPEQEEVATMFAVMLDTDYMTKPRFKENF 442

Query: 3354 FSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXXXXXXXXXXXXXXXXXDKYMW 3533
            FSDWKK+LGKNH +QNLEDCDF PIYEWHQ                         +KYM 
Sbjct: 443  FSDWKKMLGKNHTVQNLEDCDFGPIYEWHQQEKEKRKQMTTEEKKALKEERLQQEEKYMR 502

Query: 3534 AYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPECPVPGE 3713
            A VDG +EKVGNFRVEPPGLFRGRGEHPK+GKLKKRI P DITINIGKDAPIPECP+PGE
Sbjct: 503  AIVDGVKEKVGNFRVEPPGLFRGRGEHPKVGKLKKRIHPRDITINIGKDAPIPECPIPGE 562

Query: 3714 RWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 3893
            RWKE+R+DNTVTWLA+WNDP+N KE KYVFLA SSTLKGQSDKEKYEKARLLKDYIHGIR
Sbjct: 563  RWKEVRNDNTVTWLAYWNDPVNLKECKYVFLAPSSTLKGQSDKEKYEKARLLKDYIHGIR 622

Query: 3894 AAYTKDFAS-KDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 4070
            AAYTKDF + KDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN
Sbjct: 623  AAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPN 682

Query: 4071 ILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 4250
            ILK DF+GKDSIRYQNEV+VE AVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG
Sbjct: 683  ILKIDFIGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPG 742

Query: 4251 LTAKVFRTYNASITLDDMLSRATNG 4325
            LTAKVFRTYNASITLDDMLS+ T G
Sbjct: 743  LTAKVFRTYNASITLDDMLSKETKG 767



 Score =  243 bits (619), Expect = 7e-61
 Identities = 143/303 (47%), Positives = 175/303 (57%), Gaps = 9/303 (2%)
 Frame = +3

Query: 2124 MAVEACPTPNLRDDMDEDDEPLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISDVR 2303
            MAVEAC T NL +DM++D+ P++FKR            E +K+S QK  GQSA   SDVR
Sbjct: 1    MAVEACTTTNLMEDMEDDEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDVR 60

Query: 2304 PANGESSSGQKGRMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDKVK 2483
            PANGESSS QKGR+   ++                                    T   K
Sbjct: 61   PANGESSSAQKGRIQPSAETPPVKSPLSSPKASNSSAKASPITSPGANSKLSASATSTAK 120

Query: 2484 PINQQKSATVIKEEKSSPLRSAFEANDDSEDSDDGKPLRLRLSAALSKGNTSQVSKEGSK 2663
              N  KS+    E K  P     +AN +SE SDD KPL  R S   SKG ++  +KEG  
Sbjct: 121  QQNHHKSSAAFIEPK--PSVPPAKANSNSESSDDEKPLIARTSGCSSKGKSNHANKEGGD 178

Query: 2664 P---------ENEDSDDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNGSTLRG 2816
                      E+EDS+DEKPL+ RFP KS  GESTSKSYDSD+ +PLA K+QQNGS  R 
Sbjct: 179  SCSIRRPVVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLAAKVQQNGSASRD 238

Query: 2817 GQTNKSSNMSNKRPSGEVKSSNQSSVKKPKLSSASSLTNKKQAPVKAEPKAEGDDDHLPI 2996
            G  NKS+++SNKR  GEVKS NQSS+KKPKLSS  +  + KQA VK EPKAE DDD++P+
Sbjct: 239  GPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPL 298

Query: 2997 SQR 3005
            SQR
Sbjct: 299  SQR 301


>ref|XP_006279978.1| hypothetical protein CARUB_v10025848mg [Capsella rubella]
            gi|482548682|gb|EOA12876.1| hypothetical protein
            CARUB_v10025848mg [Capsella rubella]
          Length = 915

 Score =  647 bits (1670), Expect = 0.0
 Identities = 375/765 (49%), Positives = 449/765 (58%), Gaps = 45/765 (5%)
 Frame = +3

Query: 2160 DDMDEDDEPLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISDVRPANGESSSGQKG 2339
            DD DEDD PLVFKR             T   +++ R   + R       A G + S    
Sbjct: 19   DDEDEDDIPLVFKRTS----------NTAATTNRSRPNNAMRN-----SAIGSTKSPPPT 63

Query: 2340 RMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDKVK-PINQQKSATVI 2516
            R  L S P++                                +   VK P+   +S  V+
Sbjct: 64   RSPLTS-PNRSASSVRSSMMKPSLPSSSSV------------QRSTVKSPLRDDRS--VV 108

Query: 2517 KEEKSSPLRSAFEANDDSEDSDDGKPLRLRLSAALSKGNTSQVSKEG----SKPENEDS- 2681
             +E++   ++   +  D EDS+D KPL  RL    SK  T Q    G     KP  + + 
Sbjct: 109  AKERNGLGKAPSVSKSDDEDSEDDKPLSARLKMD-SKDLTKQPGSSGRGSMQKPGQKSNM 167

Query: 2682 --------------DDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNGSTLRGG 2819
                          D+  P+++    K+  G S+SK   ++   PL   + +NG  L+  
Sbjct: 168  RPQGLGDNTKKKVLDERAPMSSTVQAKTSVGTSSSKPVHNEQKRPLVNNINRNG--LKPK 225

Query: 2820 QTNKSSNMSNKRPSGEVKSSNQSSVKKPKLSS-------------------------ASS 2924
                SS    KRP  +  SSNQSSVK+PKLS                          AS 
Sbjct: 226  TEGHSSQAPAKRPLEKGSSSNQSSVKRPKLSEPAKPLKVEQGSHSAATPDGKEKNLDASK 285

Query: 2925 LTNKKQAPVKAEPKAEGDDDHLPISQRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 3104
                 QA VK +     DDDH+PI+ R+                                
Sbjct: 286  PLRANQATVKEDNS--DDDDHVPIASRMKSDSSNNKASSAKPNSSKMIASSSRTIAKKPN 343

Query: 3105 XXXXXXXXXXXXXXXXXXXXXXXWNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEE 3284
                                   W TL+H GVIFPPPY+ HGVK+LY+G+PVDLTPEQEE
Sbjct: 344  KWVKDSKFSKSSKSLPSGDGQTKWKTLEHNGVIFPPPYKRHGVKILYQGKPVDLTPEQEE 403

Query: 3285 VATMFAVMLDTDYMNKPRFKENFFSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXX 3464
            VATMFAVM +T+Y NKP+F+ENF++DW+K+LGKNH+I+NL+DCDFTPIYEW         
Sbjct: 404  VATMFAVMRETEYYNKPKFRENFWNDWRKLLGKNHMIKNLDDCDFTPIYEWSMQEKEAKK 463

Query: 3465 XXXXXXXXXXXXXXXXXXDKYMWAYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRI 3644
                              +KYMWA +DG RE++GNFRVEPPGLFRGRGEHPKMGKLKKRI
Sbjct: 464  QMSAEEKRIVKEEKLQQEEKYMWAVLDGVRERIGNFRVEPPGLFRGRGEHPKMGKLKKRI 523

Query: 3645 RPSDITINIGKDAPIPECPVPGERWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTL 3824
            RP DITINIGK+APIPECP+ GERWKE++HDNTVTWLAFWNDPINPKEFKYVFLAASS+L
Sbjct: 524  RPCDITINIGKEAPIPECPIRGERWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSL 583

Query: 3825 KGQSDKEKYEKARLLKDYIHGIRAAYTKDFASKDPMKKQIAVATYLIDKLALRAGNEKDD 4004
            KGQSDKEKYEKAR L ++I  IRAAYTKDF +KD  K+QIAVATYLIDKLALRAGNEKDD
Sbjct: 584  KGQSDKEKYEKARKLHNHIGSIRAAYTKDFNNKDVTKRQIAVATYLIDKLALRAGNEKDD 643

Query: 4005 DEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGS 4184
            DEADTVGCCTLKV NVE +PPN LKFDFLGKDSI+Y N VEVE  V+KAI QF++GK  +
Sbjct: 644  DEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKA 703

Query: 4185 EDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSRAT 4319
            +DLFD LDTSKLNAHLKELM GLTAKVFRTYNASITLD MLS+ T
Sbjct: 704  DDLFDELDTSKLNAHLKELMAGLTAKVFRTYNASITLDLMLSKET 748


>gb|AAD08711.1| topoisomerase I [Nicotiana tabacum] gi|14626487|gb|AAK69776.1|
            topoisomerase I [Nicotiana tabacum]
          Length = 852

 Score =  645 bits (1663), Expect = 0.0
 Identities = 309/384 (80%), Positives = 335/384 (87%)
 Frame = +3

Query: 3174 WNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENF 3353
            W TL H GVIFPPPY+PHGVKMLYKG+PVDLTPEQEEVATM+AVMLDTDYM+K +FKENF
Sbjct: 335  WTTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMYAVMLDTDYMSKLQFKENF 394

Query: 3354 FSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXXXXXXXXXXXXXXXXXXDKYMW 3533
             +DW+KILGKNHVIQNL+DCDFTPIYE                            +KYMW
Sbjct: 395  MNDWRKILGKNHVIQNLDDCDFTPIYERPSSEKEKKKQMSTKRKRPLREEKLKQEEKYMW 454

Query: 3534 AYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPECPVPGE 3713
            A VDG +EKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP+DITINIGK APIPECP+PGE
Sbjct: 455  AIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPNDITINIGKGAPIPECPIPGE 514

Query: 3714 RWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIR 3893
            RWKE+RHDNTVTWLAFWNDPINP+EFKYVFLAASS+LKGQSDKEKYEKAR LKDYI GIR
Sbjct: 515  RWKEVRHDNTVTWLAFWNDPINPREFKYVFLAASSSLKGQSDKEKYEKARRLKDYIEGIR 574

Query: 3894 AAYTKDFASKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNI 4073
            +AYTKDF SKDP+K+QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNI
Sbjct: 575  SAYTKDFTSKDPVKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNI 634

Query: 4074 LKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGL 4253
            LKFDFLGKDSIRYQNEV V   VFKAIQ FRSGK+G +DLFD+LDTSKLNAHLKELMPGL
Sbjct: 635  LKFDFLGKDSIRYQNEVAVYKPVFKAIQLFRSGKKGGDDLFDKLDTSKLNAHLKELMPGL 694

Query: 4254 TAKVFRTYNASITLDDMLSRATNG 4325
            TAKVFRTYNAS+TL+  L++ T G
Sbjct: 695  TAKVFRTYNASVTLEQQLTKLTQG 718



 Score =  152 bits (385), Expect = 1e-33
 Identities = 112/306 (36%), Positives = 151/306 (49%), Gaps = 11/306 (3%)
 Frame = +3

Query: 2124 MAVEACPTPNLRDDMDEDDE--PLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISD 2297
            MAVEA     L  ++D+DD+  PLVFKR                 SSQK+DG+S RQ SD
Sbjct: 1    MAVEAFSKTKLMAEVDDDDDDMPLVFKRSSTTSKQ-----NQSNSSSQKQDGRSGRQASD 55

Query: 2298 VRPANGESSSGQKGRMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDK 2477
            VR  NG+SSS +K +    SK S+                                  ++
Sbjct: 56   VRSPNGQSSSAEKVKAGTSSKASRAVSPFTSPKASPSSGRTSPAPNSRPSASAG----NQ 111

Query: 2478 VKPINQQKSATVIKEEKSSPLRSAFEANDDSEDSDDGKPLRLRLSAALSKGNTSQVSK-- 2651
             K +NQQ    ++  E    +    E ND++EDS+D KPL  RLS+ LSK N+S  +K  
Sbjct: 112  AKDVNQQSK--IVPNEPKQAVEPKSEPNDEAEDSEDDKPLSARLSSGLSKSNSSHANKVL 169

Query: 2652 -------EGSKPENEDSDDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNGSTL 2810
                   +   P+ EDSDDE PLA+RF LKS AG STSKS +S++ +P   K++QNG   
Sbjct: 170  GTSASVQKSRPPKKEDSDDEIPLASRFQLKSNAGASTSKSSNSEEVKP---KIRQNGL-- 224

Query: 2811 RGGQTNKSSNMSNKRPSGEVKSSNQSSVKKPKLSSASSLTNKKQAPVKAEPKAEGDDDHL 2990
                   S+ + +KRP G+V    +  +K         L    +A VK E K E DDD +
Sbjct: 225  ------PSTTVLSKRPPGDVSLLLRLQLKSLGFLMHLHLFRVSEASVKPEKKTEDDDDDV 278

Query: 2991 PISQRI 3008
            PISQRI
Sbjct: 279  PISQRI 284


>ref|NP_200342.1| DNA topoisomerase 1 beta [Arabidopsis thaliana]
            gi|9758163|dbj|BAB08548.1| DNA topoisomerase I
            [Arabidopsis thaliana] gi|110741973|dbj|BAE98926.1| DNA
            topoisomerase I like protein [Arabidopsis thaliana]
            gi|332009232|gb|AED96615.1| DNA topoisomerase 1 beta
            [Arabidopsis thaliana]
          Length = 917

 Score =  644 bits (1660), Expect = 0.0
 Identities = 363/763 (47%), Positives = 443/763 (58%), Gaps = 43/763 (5%)
 Frame = +3

Query: 2160 DDMDEDDEPLVFKRXXXXXXXXXXXXETRKVSSQKRDGQSARQISDVRPANGESSSGQKG 2339
            +D DEDD PLVFKR                       G +        P    + S    
Sbjct: 19   EDEDEDDIPLVFKRNSNTAATTNRPSPINNAMRNSAIGSTKSSPPMRSPLTSPNRSASSS 78

Query: 2340 RMDLLSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDKVKPINQQKSATVIK 2519
                + KP+                                  +    P+   +S  V+ 
Sbjct: 79   TRSSMMKPA-------------------------LPSSSSVQRSTLKSPLRDDRS--VVA 111

Query: 2520 EEKSSPLRSAFEANDDSEDSDDGKPLRLRLS----------AALSKGNTSQ-VSKEGSKP 2666
            +E++   ++   +  D EDS+D KPL  RL           ++  +G+T Q V K   +P
Sbjct: 112  KERNGFGKAPSVSKSDDEDSEDDKPLSARLKLDSKEVTKQPSSSGRGSTQQAVQKSNMRP 171

Query: 2667 ENEDS-------DDEKPLATRFPLKSGAGESTSKSYDSDDDEPLAKKLQQNGSTLRGGQT 2825
            +           D+  P+++    K+  G S+SK    +   PL   + +NG  L+    
Sbjct: 172  QGLSDYTKKKVLDERAPMSSTVQTKTSVGTSSSKPVHIEQKRPLVNNIDRNG--LKPKTE 229

Query: 2826 NKSSNMSNKRPSGEVKSSNQSSVKKPKLSS-------------------------ASSLT 2930
              SS    KRP  +  SSNQSSVK+PKLS                          AS   
Sbjct: 230  GHSSQAPAKRPLEKGSSSNQSSVKRPKLSEPARPVKVEQGSHISATQDAKGKNLDASKPL 289

Query: 2931 NKKQAPVKAEPKAEGDDDHLPISQRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 3110
               QA VK E  ++GDD H+PI+ R+                                  
Sbjct: 290  RANQATVK-EDNSDGDD-HVPIASRMKSDSSNNKSSSAKPSSSKMIASSSRTIAQKPNKW 347

Query: 3111 XXXXXXXXXXXXXXXXXXXXXWNTLKHCGVIFPPPYQPHGVKMLYKGQPVDLTPEQEEVA 3290
                                 W TL+H GVIFPPPY+ HGVK+L++G+PVDLTPEQEEVA
Sbjct: 348  VKDSKYSKSSKSLPSGDGQKKWKTLQHNGVIFPPPYKRHGVKILFQGKPVDLTPEQEEVA 407

Query: 3291 TMFAVMLDTDYMNKPRFKENFFSDWKKILGKNHVIQNLEDCDFTPIYEWHQGXXXXXXXX 3470
            TMFAVM +T+Y  KP+F+ENF++DW+K+LGKNH+I++L+DCDFTPIYEW+          
Sbjct: 408  TMFAVMRETEYYKKPKFRENFWNDWRKLLGKNHMIKSLDDCDFTPIYEWYMQEKETKKQM 467

Query: 3471 XXXXXXXXXXXXXXXXDKYMWAYVDGKREKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRP 3650
                            +KYMWA +DG RE++GNFRVEPPGLFRGRGEHPKMGKLKKRIRP
Sbjct: 468  TAEEKRIVKEEKLKQEEKYMWAVLDGVRERIGNFRVEPPGLFRGRGEHPKMGKLKKRIRP 527

Query: 3651 SDITINIGKDAPIPECPVPGERWKEIRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKG 3830
             DITINIGK+APIPECP+PGERWKE++HDNTVTWLAFW+DPINPKEFKYVFLAASS+LKG
Sbjct: 528  CDITINIGKEAPIPECPIPGERWKEVKHDNTVTWLAFWSDPINPKEFKYVFLAASSSLKG 587

Query: 3831 QSDKEKYEKARLLKDYIHGIRAAYTKDFASKDPMKKQIAVATYLIDKLALRAGNEKDDDE 4010
            QSDKEKYEKAR L ++I  IRAAYTKDF +KD  K+QIAVATYLIDKLALRAGNEKDDDE
Sbjct: 588  QSDKEKYEKARKLHNHIGSIRAAYTKDFNNKDVTKRQIAVATYLIDKLALRAGNEKDDDE 647

Query: 4011 ADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSED 4190
            ADTVGCCTLKV NVE +PPN LKFDFLGKDSI+Y N VEVE  V+KAI QF++GK  ++D
Sbjct: 648  ADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDD 707

Query: 4191 LFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSRAT 4319
            LFD LDTSKLN HLKELM GLTAKVFRTYNASITLD MLS+ T
Sbjct: 708  LFDELDTSKLNTHLKELMAGLTAKVFRTYNASITLDLMLSKET 750