BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00001042
         (1789 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...   402   e-109
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     400   e-109
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        400   e-108
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   400   e-108
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     399   e-108
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   395   e-107
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           394   e-107
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   393   e-106
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   390   e-106
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   388   e-105
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   378   e-102
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              370   1e-99
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              370   1e-99
emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera]   369   2e-99
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              369   3e-99
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              368   5e-99
emb|CAH66031.1| H0515C11.7 [Oryza sativa Indica Group]                367   1e-98
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   364   6e-98
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  363   2e-97
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]          363   2e-97

>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1138

 Score =  402 bits (1034), Expect = e-109
 Identities = 197/316 (62%), Positives = 256/316 (81%), Gaps = 1/316 (0%)
 Frame = -1

Query: 1789 LIAGSSIAEVNKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVER 1610
            LIA    +E+ KLKAQL+SEFEMKDLGAAKKILG+EI ++R + KL+LSQ+ YI+KV+ R
Sbjct: 824  LIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGIEITKERHSGKLYLSQKGYIEKVLRR 883

Query: 1609 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHA 1430
            F M  AK VSTPLAAHF+LS+ L PQ++ + EYMSR+PY+  VGSLMYA++C+RPD++HA
Sbjct: 884  FNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSVVGSLMYAMVCSRPDLSHA 943

Query: 1429 VSVVSRYMANHGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDK 1250
            +SVVSRYMAN GKEHW+AV+WI RYL GT    L +G +   +DG++GYVDSD+AGDLD+
Sbjct: 944  LSVVSRYMANPGKEHWKAVQWIFRYLCGTSSACLQFGRS---RDGLVGYVDSDFAGDLDR 1000

Query: 1249 NRSITGYIFTLFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSL-GLDD 1073
             RS+ GY+FT+ G  +SW+A LQ+TVALSTTEAEYMA+SEA KE +W++GL   L G+  
Sbjct: 1001 RRSLAGYVFTIGGCAVSWKANLQATVALSTTEAEYMAISEACKETIWLRGLYTELCGVTS 1060

Query: 1072 QTSIYCDSQSAIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTK 893
              +I+CDSQSAI LT++QMFHERTKHI+VRYHF+R  ++ GD+ V KI+T DN ADM+TK
Sbjct: 1061 CINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRSVITEGDVKVCKISTHDNPADMMTK 1120

Query: 892  PVTSSKFKHCLDLVGI 845
            PV ++KF+ C  LVG+
Sbjct: 1121 PVPATKFELCSSLVGV 1136


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  400 bits (1029), Expect = e-109
 Identities = 196/316 (62%), Positives = 254/316 (80%), Gaps = 1/316 (0%)
 Frame = -1

Query: 1789 LIAGSSIAEVNKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVER 1610
            LIA    +E+ KLKAQL+SEFEMKDLGAAKKILGMEI R+R + KL+LSQ+ YI+KV+ R
Sbjct: 897  LIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRR 956

Query: 1609 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHA 1430
            F M  AK VSTPLAAHF+LS+ L PQ++ + EYMSR+PY   VGSLMYA++C+R D++HA
Sbjct: 957  FNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYLSVVGSLMYAMVCSRLDLSHA 1016

Query: 1429 VSVVSRYMANHGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDK 1250
            +SVVSRYMAN GKEHW+ V+WI +YL+GT    L +G +   +DG++GYVDSD+AGDLD+
Sbjct: 1017 LSVVSRYMANPGKEHWKVVQWIFKYLRGTSSACLQFGRS---RDGLVGYVDSDFAGDLDR 1073

Query: 1249 NRSITGYIFTLFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSL-GLDD 1073
             RS+TGY+FT+ G  +SW+A LQ+TVALSTTE EYMA+SEA KEA+W++GL   L G+  
Sbjct: 1074 RRSLTGYVFTIGGCAVSWKASLQATVALSTTEVEYMAISEACKEAIWLRGLYTELCGVTS 1133

Query: 1072 QTSIYCDSQSAIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTK 893
              +I+CDSQSAI  T++QMFHERTKHI+VRYHF+R  ++ GD+ V KI+T DN ADM+TK
Sbjct: 1134 CINIFCDSQSAICFTKDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTK 1193

Query: 892  PVTSSKFKHCLDLVGI 845
            PV ++KF+ C  LVG+
Sbjct: 1194 PVPTTKFELCSSLVGV 1209


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  400 bits (1028), Expect = e-108
 Identities = 197/306 (64%), Positives = 250/306 (81%), Gaps = 1/306 (0%)
 Frame = -1

Query: 1759 NKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVERFGMDKAKHVS 1580
            +KLKAQL+SEFEMKDLG AKKILGMEI R+R + KL+LSQ+ YI+KV  RF M  AK VS
Sbjct: 877  SKLKAQLSSEFEMKDLGVAKKILGMEITRERHSDKLYLSQKGYIEKVFRRFNMHDAKPVS 936

Query: 1579 TPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHAVSVVSRYMAN 1400
            TPLAAHF+LS+ L PQ++   EYMSR+PY+ AVGSLMYA+IC+RPD++HA+SVVSRYMAN
Sbjct: 937  TPLAAHFRLSSDLCPQSDYNIEYMSRVPYSSAVGSLMYAMICSRPDLSHALSVVSRYMAN 996

Query: 1399 HGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDKNRSITGYIFT 1220
             GKEHW+ V+WI RYL GT    L +G +   +DG++GYVDSD+AGDLD+ RS+TGY+FT
Sbjct: 997  PGKEHWKDVQWIFRYLHGTSSACLQFGRS---RDGLVGYVDSDFAGDLDRRRSLTGYVFT 1053

Query: 1219 LFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSL-GLDDQTSIYCDSQS 1043
            + G  +SW+A LQ+TVALSTTEAEYMA+SEA KEA+W++GL   L G+    +I+CDSQS
Sbjct: 1054 IGGCAVSWKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQS 1113

Query: 1042 AIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTKPVTSSKFKHC 863
            AI LT++QMFHERTKHI+VRYHF+R  ++ GD+ V KI+T DN ADM+TKPV ++KF+ C
Sbjct: 1114 AICLTKDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTKPVPATKFELC 1173

Query: 862  LDLVGI 845
              LVG+
Sbjct: 1174 SSLVGV 1179


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  400 bits (1027), Expect = e-108
 Identities = 198/318 (62%), Positives = 256/318 (80%), Gaps = 1/318 (0%)
 Frame = -1

Query: 1789 LIAGSSIAEVNKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVER 1610
            LIA    +E+ KLKAQL+SEFEMKDLGAAKKILGMEI R R + KL+LSQ+ YI+KV+ R
Sbjct: 1225 LIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKLYLSQKGYIEKVLRR 1284

Query: 1609 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHA 1430
            F M  AK VSTPLAAHF+LS+ L PQ++ + EYMSR+PY+ AVGSLMYA++C+RPD++HA
Sbjct: 1285 FNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHA 1344

Query: 1429 VSVVSRYMANHGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDK 1250
            +SVVSRYMAN GKEHW+AV+WI RYL+GT    L +G +   +DG++GYVDSD+AGDLD+
Sbjct: 1345 LSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRS---RDGLVGYVDSDFAGDLDR 1401

Query: 1249 NRSITGYIFTLFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSL-GLDD 1073
             RS+ GY+FT+ G  +SW+A LQ+TVALSTTEAEYMA+SEA KEA+W++GL   L  +  
Sbjct: 1402 GRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTVLCAVTS 1461

Query: 1072 QTSIYCDSQSAIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTK 893
              +I+CDSQSAI LT++QMFHERTKHI+VRYHF+R  ++ GD+ + KI+  DN ADM+TK
Sbjct: 1462 CINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRGLIAEGDVKICKISIHDNPADMMTK 1521

Query: 892  PVTSSKFKHCLDLVGILD 839
            PV ++KF+ C  LV + D
Sbjct: 1522 PVPATKFELCSSLVILSD 1539


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  399 bits (1024), Expect = e-108
 Identities = 197/316 (62%), Positives = 254/316 (80%), Gaps = 1/316 (0%)
 Frame = -1

Query: 1789 LIAGSSIAEVNKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVER 1610
            LIA    +E+ KLKAQL+SEFEMKDLGAAKKILGMEI R+R + KL+LSQ+ YI+KV+ R
Sbjct: 927  LIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHR 986

Query: 1609 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHA 1430
            F M  AK VST LAAHF+LS+ L PQ+  + EYMSR+PY+ AV SLMYA++C+RPD++HA
Sbjct: 987  FNMHDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHA 1046

Query: 1429 VSVVSRYMANHGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDK 1250
            +SVVSRYMAN GKEHW+AV+WI RYL+GT    L +G +    DG++GYVDSD+AGDLD+
Sbjct: 1047 LSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRS---SDGLVGYVDSDFAGDLDR 1103

Query: 1249 NRSITGYIFTLFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSL-GLDD 1073
             RS+TGY+FT+ G  +SW+A LQ+TVALSTTEAEYMA+SEA KE +W++GL   L G+  
Sbjct: 1104 RRSLTGYVFTVGGCAVSWKASLQATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVTS 1163

Query: 1072 QTSIYCDSQSAIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTK 893
              +I+CDSQSAI LT++QMFHERTKHI++RYHF+R  ++ GD+ V KI+T DN  DM+TK
Sbjct: 1164 CINIFCDSQSAICLTKDQMFHERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTK 1223

Query: 892  PVTSSKFKHCLDLVGI 845
            PV ++KF+ C  LVG+
Sbjct: 1224 PVPATKFELCSSLVGV 1239


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  395 bits (1015), Expect = e-107
 Identities = 201/316 (63%), Positives = 246/316 (77%), Gaps = 1/316 (0%)
 Frame = -1

Query: 1789 LIAGSSIAEVNKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVER 1610
            LIA     ++ KLK  L++EFEMKDLGAA+KILGMEI RDR+ +KL LSQR YI+KV+ R
Sbjct: 994  LIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLAR 1053

Query: 1609 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHA 1430
            FGM  +K + TP AA+  L+A  +PQ+EEE+EYMSR+PYA AVGSLMYA++CTRPD+AHA
Sbjct: 1054 FGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHA 1113

Query: 1429 VSVVSRYMANHGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDK 1250
            VSVVSR+M   G+EHWQAVK I RYL+GT D+ L YG +   Q  + GY DSDYAGD+D 
Sbjct: 1114 VSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGD--TQCLVTGYSDSDYAGDVDT 1171

Query: 1249 NRSITGYIFTLFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSLGL-DD 1073
             RS+TGY+FTL G V+SW+A LQ TV LSTTEAEYMAL+EAAKE +W+KGLV  LGL  D
Sbjct: 1172 RRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHD 1231

Query: 1072 QTSIYCDSQSAIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTK 893
            Q ++YCDS SAI L ++Q+ HERTKHI+VRYHF+R   S   + VKK+ T DN ADM TK
Sbjct: 1232 QATVYCDSLSAICLAKDQVHHERTKHIDVRYHFLR---SEKRIKVKKVGTADNPADMFTK 1288

Query: 892  PVTSSKFKHCLDLVGI 845
            PV  SKF+HCLDL+ I
Sbjct: 1289 PVPQSKFQHCLDLLNI 1304


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  394 bits (1012), Expect = e-107
 Identities = 193/318 (60%), Positives = 247/318 (77%), Gaps = 1/318 (0%)
 Frame = -1

Query: 1789 LIAGSSIAEVNKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVER 1610
            LIA  S  E+ KLK  L+SEF+MKDLG+AKKILGMEI RDRK+  L LSQ  YIKKV++R
Sbjct: 1021 LIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQR 1080

Query: 1609 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHA 1430
            F M  AK VSTP+A HFKLSA   P T+ E EYMSR+PY+ AVGSLMYA++C+RPD+++A
Sbjct: 1081 FNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYA 1140

Query: 1429 VSVVSRYMANHGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDK 1250
            +S+VSRYM+N GKEHW+A++WI RYL+GT    L +G       G+IGYVDSDYA DLD+
Sbjct: 1141 MSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKFGRT---DKGLIGYVDSDYAADLDR 1197

Query: 1249 NRSITGYIFTLFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSL-GLDD 1073
             RS+TGY+FT+    +SWRA LQS VALSTTEAEYMA+ EA KE +W+KGL   L G++ 
Sbjct: 1198 RRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVES 1257

Query: 1072 QTSIYCDSQSAIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTK 893
              S++CDSQSAI+LT++QMFHERTKHI+++YHFVR+ +  G + V KI T DN ADM+TK
Sbjct: 1258 CISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPADMMTK 1317

Query: 892  PVTSSKFKHCLDLVGILD 839
            P+  +KF+ C  LVG+++
Sbjct: 1318 PIPVAKFELCSSLVGLIE 1335


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  393 bits (1010), Expect = e-106
 Identities = 193/318 (60%), Positives = 247/318 (77%), Gaps = 1/318 (0%)
 Frame = -1

Query: 1789 LIAGSSIAEVNKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVER 1610
            LIA  S  E+ KLK  L+SEF+MKDLG+AKKILGMEI RDRK+  L LSQ  YIKKV++R
Sbjct: 1019 LIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQR 1078

Query: 1609 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHA 1430
            F M  AK VSTP+A HFKLSA   P  + E EYMSR+PY+ AVGSLMYA++C+RPD+++A
Sbjct: 1079 FNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYA 1138

Query: 1429 VSVVSRYMANHGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDK 1250
            +S+VSRYM+N GKEHW+AV+WI RYL+GT    L +G       G+IGYVDSDYA DLD+
Sbjct: 1139 MSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRT---DKGLIGYVDSDYAADLDR 1195

Query: 1249 NRSITGYIFTLFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSL-GLDD 1073
             RS+TGY+FT+    +SWRA LQS VALSTTEAEYMA+ EA KE +W+KGL   L G++ 
Sbjct: 1196 RRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVES 1255

Query: 1072 QTSIYCDSQSAIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTK 893
              S++CDSQSAI+LT++QMFHERTKHI+++YHFVR+ +  G + V KI+T DN ADM+TK
Sbjct: 1256 CISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTK 1315

Query: 892  PVTSSKFKHCLDLVGILD 839
            P+  +KF+ C  LVG+++
Sbjct: 1316 PIPVAKFELCSSLVGLIE 1333


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  390 bits (1003), Expect = e-106
 Identities = 192/318 (60%), Positives = 246/318 (77%), Gaps = 1/318 (0%)
 Frame = -1

Query: 1789 LIAGSSIAEVNKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVER 1610
            LIA  S  E+ KLK  L+SEF+MKDLG+AKKIL MEI RDRK+  L LSQ  YIKKV++R
Sbjct: 1019 LIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQR 1078

Query: 1609 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHA 1430
            F M  AK VSTP+A HFKLSA   P T+ E EYMSR+PY+ AVGSLMYA++C+RPD+++A
Sbjct: 1079 FNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYA 1138

Query: 1429 VSVVSRYMANHGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDK 1250
            +S+VSRYM+N GKEHW+ V+WI RYL+GT    L +G       G+IGYVDSDYA DLD+
Sbjct: 1139 MSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKFGRT---DKGLIGYVDSDYAADLDR 1195

Query: 1249 NRSITGYIFTLFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSL-GLDD 1073
             RS+TGY+FT+    +SWRA LQS VALSTTEAEYMA+ EA KE +W+KGL   L G++ 
Sbjct: 1196 RRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVES 1255

Query: 1072 QTSIYCDSQSAIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTK 893
              S++CDSQSAI+LT++QMFHERTKHI+++YHFVR+ +  G + V KI+T DN ADM+TK
Sbjct: 1256 CISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTK 1315

Query: 892  PVTSSKFKHCLDLVGILD 839
            P+  +KF+ C  LVG+++
Sbjct: 1316 PIPVAKFELCSSLVGLIE 1333


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  388 bits (997), Expect = e-105
 Identities = 191/317 (60%), Positives = 248/317 (78%), Gaps = 1/317 (0%)
 Frame = -1

Query: 1789 LIAGSSIAEVNKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVER 1610
            LIA  S  ++  LK QL+SEF+MKDLGAAKKILGMEI RDR +  L LSQ+ YIKKV++R
Sbjct: 1008 LIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQR 1067

Query: 1609 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHA 1430
            F M  AK VSTP+A HFKLSA     T+E+ EYMSR+PY+ AVGSLMYA++C+ PD++HA
Sbjct: 1068 FNMHDAKPVSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHA 1127

Query: 1429 VSVVSRYMANHGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDK 1250
            +S+VSRYMAN GKEHW+AV+WI RYL+GT D  L +G    I  G++GYVDSD+A DLDK
Sbjct: 1128 MSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKFGR---IDKGLVGYVDSDFAADLDK 1184

Query: 1249 NRSITGYIFTLFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSL-GLDD 1073
             RS+TGY+FT+    +SW+A LQ  VA STTEAEYMA++EA KE++W+KGL   L G+D 
Sbjct: 1185 RRSLTGYVFTIGSCAVSWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDS 1244

Query: 1072 QTSIYCDSQSAIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTK 893
              +++CDSQSAI LT++QMFHERTKHI+++YH+VR+ V++G + V KI+  DN ADM+TK
Sbjct: 1245 CINLFCDSQSAICLTKDQMFHERTKHIDIKYHYVRDIVAQGKLKVCKISIHDNPADMMTK 1304

Query: 892  PVTSSKFKHCLDLVGIL 842
            P+  +KF+ C  LVGI+
Sbjct: 1305 PIPVAKFELCSSLVGIV 1321


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  378 bits (970), Expect = e-102
 Identities = 188/313 (60%), Positives = 241/313 (76%), Gaps = 1/313 (0%)
 Frame = -1

Query: 1789 LIAGSSIAEVNKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVER 1610
            LIA  + AE+NKLK  L+SEFEMKDLGAAKKILGMEI RDR A  L++SQ++YI+K+++ 
Sbjct: 1318 LIAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIWRDRDAGLLYVSQQKYIEKLMQA 1377

Query: 1609 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHA 1430
            F MD +K VSTPLA HFK      P T+EE EYM  +PY+  VGSLMYA++CTRPD+A A
Sbjct: 1378 FHMDHSKPVSTPLAQHFKFDHSTLPSTDEEVEYMKSVPYSSVVGSLMYAMVCTRPDLAFA 1437

Query: 1429 VSVVSRYMANHGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDK 1250
            VSVVSR+M+N GK HW+AVKWI+RYLKG+  + L YG N  +  G++G+ DSD+ GDL K
Sbjct: 1438 VSVVSRFMSNPGKAHWEAVKWIMRYLKGSSSVCLVYG-NGDVSSGLVGFTDSDHGGDLMK 1496

Query: 1249 NRSITGYIFTLFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSLGLD-D 1073
             RS+T YIFTLFG  ISWRA LQ TVALSTTEAEYM+L+E  KE +W+ G + SLGL+  
Sbjct: 1497 RRSLTCYIFTLFGCAISWRASLQPTVALSTTEAEYMSLTEGVKEGMWLNGFLGSLGLNLS 1556

Query: 1072 QTSIYCDSQSAIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTK 893
            +  IYCDSQSA+ L +N ++HERTKHI+VR +F+R+ +     +++K+AT+ N ADMLTK
Sbjct: 1557 KPVIYCDSQSALCLAKNPVYHERTKHIDVRLNFIRDVIEEKLFSIEKVATEVNPADMLTK 1616

Query: 892  PVTSSKFKHCLDL 854
            P+T+ KFKH L L
Sbjct: 1617 PITTEKFKHSLGL 1629


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  370 bits (949), Expect = 1e-99
 Identities = 183/319 (57%), Positives = 236/319 (73%), Gaps = 1/319 (0%)
 Frame = -1

Query: 1789 LIAGSSIAEVNKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVER 1610
            L+ G +   V +LKAQL  EF+MKDLG A KILGM+IHRDRK +K+ LSQ+ Y++KV+ R
Sbjct: 990  LVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRR 1049

Query: 1609 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHA 1430
            F M   K +STPL  +FKLS+ +SP  E E   MSR+PYA AVGSLMYA+ICTRPDIA A
Sbjct: 1050 FNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQA 1109

Query: 1429 VSVVSRYMANHGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDK 1250
            V VVSR+MA+ GKEHW AVK I+RY+KGT  + + +G +   +  + GYVDSD+AGD DK
Sbjct: 1110 VGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGS---ELTVWGYVDSDFAGDHDK 1166

Query: 1249 NRSITGYIFTLFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSLG-LDD 1073
             +S TGY+FTL GG +SW + LQ+ VALSTTEAEYMA ++A KEA+WM+ L+  LG   +
Sbjct: 1167 RKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQE 1226

Query: 1072 QTSIYCDSQSAIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTK 893
            Q ++YCDSQSA+H+  N  FH RTKHI V+YHFVRE V  G + ++KI T DNLAD++TK
Sbjct: 1227 QITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTK 1286

Query: 892  PVTSSKFKHCLDLVGILDT 836
            P+ + KF  C    G+L+T
Sbjct: 1287 PINTDKFVWCRSSYGLLET 1305


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  370 bits (949), Expect = 1e-99
 Identities = 183/319 (57%), Positives = 236/319 (73%), Gaps = 1/319 (0%)
 Frame = -1

Query: 1789 LIAGSSIAEVNKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVER 1610
            L+ G +   V +LKAQL  EF+MKDLG A KILGM+IHRDRK +K+ LSQ+ Y++KV+ R
Sbjct: 990  LVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRR 1049

Query: 1609 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHA 1430
            F M   K +STPL  +FKLS+ +SP  E E   MSR+PYA AVGSLMYA+ICTRPDIA A
Sbjct: 1050 FNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQA 1109

Query: 1429 VSVVSRYMANHGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDK 1250
            V VVSR+MA+ GKEHW AVK I+RY+KGT  + + +G +   +  + GYVDSD+AGD DK
Sbjct: 1110 VGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGS---ELTVRGYVDSDFAGDHDK 1166

Query: 1249 NRSITGYIFTLFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSLG-LDD 1073
             +S TGY+FTL GG +SW + LQ+ VALSTTEAEYMA ++A KEA+WM+ L+  LG   +
Sbjct: 1167 RKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQE 1226

Query: 1072 QTSIYCDSQSAIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTK 893
            Q ++YCDSQSA+H+  N  FH RTKHI V+YHFVRE V  G + ++KI T DNLAD++TK
Sbjct: 1227 QITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTK 1286

Query: 892  PVTSSKFKHCLDLVGILDT 836
            P+ + KF  C    G+L+T
Sbjct: 1287 PINADKFVWCRSSYGLLET 1305


>emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera]
          Length = 406

 Score =  369 bits (947), Expect = 2e-99
 Identities = 178/313 (56%), Positives = 238/313 (76%), Gaps = 1/313 (0%)
 Frame = -1

Query: 1789 LIAGSSIAEVNKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVER 1610
            LI   S+ EVNKLK+ L+ EF+MKDLG  KKI+G+EIHRDR   +L LSQ  Y+K+++ER
Sbjct: 94   LIVVKSMVEVNKLKSLLSKEFDMKDLGVTKKIIGIEIHRDRALGRLWLSQHNYVKRMLER 153

Query: 1609 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHA 1430
            F MD AK VSTPLA HF+LS    P+T+ E   MS++PYA AVG LMYA++CTR D+AHA
Sbjct: 154  FNMDNAKPVSTPLANHFRLSTSQCPKTDGEVNDMSKVPYASAVGCLMYAMVCTRLDLAHA 213

Query: 1429 VSVVSRYMANHGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDK 1250
            VSVVS++++N G+ +W AVKWI RYL+GT D  +T+ +  S    + GYVD+DYAGDLD+
Sbjct: 214  VSVVSKFLSNPGRMNWDAVKWIFRYLRGTTDYGITFSKQQS-DPSVKGYVDADYAGDLDE 272

Query: 1249 NRSITGYIFTLFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSLGLDD- 1073
             RS  GY+FTL GG I W++++QS VAL TT++EYMA++E  KE+LW+ GLV+ LG+   
Sbjct: 273  RRSTIGYVFTLGGGPICWKSMIQSLVALYTTKSEYMAIAETTKESLWLTGLVKELGIQQG 332

Query: 1072 QTSIYCDSQSAIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTK 893
               +Y D+QSAI+L +NQ++H RTKHI+VR+H + E VS G++ +KK+ T +N ADMLTK
Sbjct: 333  GVQLYFDNQSAIYLEKNQVYHARTKHIDVRFHKISELVSSGELLLKKVHTSENAADMLTK 392

Query: 892  PVTSSKFKHCLDL 854
            PVT+ KFKHCL L
Sbjct: 393  PVTTEKFKHCLKL 405


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  369 bits (946), Expect = 3e-99
 Identities = 183/319 (57%), Positives = 235/319 (73%), Gaps = 1/319 (0%)
 Frame = -1

Query: 1789 LIAGSSIAEVNKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVER 1610
            L+ G +   V +LKAQL  EF+MKDLG A KILGM+IHRDRK  K+ LSQ+ Y++KV+ R
Sbjct: 990  LVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQKNYLRKVLRR 1049

Query: 1609 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHA 1430
            F M   K +STPL  +FKLS+ +SP  E E   MSR+PYA AVGSLMYA+ICTRPDIA A
Sbjct: 1050 FNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQA 1109

Query: 1429 VSVVSRYMANHGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDK 1250
            V VVSR+MA+ GKEHW AVK I+RY+KGT  + + +G +   +  + GYVDSD+AGD DK
Sbjct: 1110 VGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGS---ELTVRGYVDSDFAGDHDK 1166

Query: 1249 NRSITGYIFTLFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSLG-LDD 1073
             +S TGY+FTL GG +SW + LQ+ VALSTTEAEYMA ++A KEA+WM+ L+  LG   +
Sbjct: 1167 RKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQE 1226

Query: 1072 QTSIYCDSQSAIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTK 893
            Q ++YCDSQSA+H+  N  FH RTKHI V+YHFVRE V  G + ++KI T DNLAD++TK
Sbjct: 1227 QITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTK 1286

Query: 892  PVTSSKFKHCLDLVGILDT 836
            P+ + KF  C    G+L+T
Sbjct: 1287 PINADKFVWCRSSYGLLET 1305


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  368 bits (944), Expect = 5e-99
 Identities = 183/319 (57%), Positives = 235/319 (73%), Gaps = 1/319 (0%)
 Frame = -1

Query: 1789 LIAGSSIAEVNKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVER 1610
            L+ G +   V +LKAQL  EF+MKDLG A KILGM+IHRDRK +K+ LSQ+ Y++KV+ R
Sbjct: 990  LVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRR 1049

Query: 1609 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHA 1430
            F M   K +STPL  +FKLS+ +SP  E E   MSR+PYA AVGSLMYA+ICTRPDIA A
Sbjct: 1050 FNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQA 1109

Query: 1429 VSVVSRYMANHGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDK 1250
            V VVSR+MA+ GKEHW AVK I+RY+KGT  + + +G +   +  + GYVDSD+AGD DK
Sbjct: 1110 VGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGS---ELTVRGYVDSDFAGDHDK 1166

Query: 1249 NRSITGYIFTLFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSLG-LDD 1073
             +S TGY+FTL GG +SW + LQ+ VALSTTEAEYMA ++A KEA+WM+ L+  LG   +
Sbjct: 1167 RKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQE 1226

Query: 1072 QTSIYCDSQSAIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTK 893
            Q ++YCDSQSA+H+  N  FH RTKHI V+YHFVRE V  G + ++KI T DNLAD +TK
Sbjct: 1227 QITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADAMTK 1286

Query: 892  PVTSSKFKHCLDLVGILDT 836
             + + KF  C  L G+L+T
Sbjct: 1287 SINTDKFIWCRSLYGLLET 1305


>emb|CAH66031.1| H0515C11.7 [Oryza sativa Indica Group]
          Length = 293

 Score =  367 bits (941), Expect = 1e-98
 Identities = 179/295 (60%), Positives = 231/295 (78%), Gaps = 1/295 (0%)
 Frame = -1

Query: 1723 MKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVERFGMDKAKHVSTPLAAHFKLSAK 1544
            MKDLGAAKKILGMEI RDR +  L LSQ+ YIKKV++RF M  AK VST +A HFKLSA 
Sbjct: 1    MKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTSIAPHFKLSAL 60

Query: 1543 LSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHAVSVVSRYMANHGKEHWQAVKWI 1364
                T+E+ EYMSR+PY+ AVGSLMYA++C+RPD++HA+S+VSRYM N GKEHW+A+ WI
Sbjct: 61   QCASTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMTNPGKEHWKAIHWI 120

Query: 1363 LRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDKNRSITGYIFTLFGGVISWRAVL 1184
             RYL+GT D  L +G       G++GYVDSD+A DLDK RS+TGY+FT+    +SW+A L
Sbjct: 121  FRYLRGTTDACLKFGRT---DKGLVGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATL 177

Query: 1183 QSTVALSTTEAEYMALSEAAKEALWMKGLVRSL-GLDDQTSIYCDSQSAIHLTENQMFHE 1007
            Q  VA STTEAEYMA++EA KE++W+KGL   L G+D   +++CDSQSAI LT++QMFHE
Sbjct: 178  QPIVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQSAICLTKDQMFHE 237

Query: 1006 RTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTKPVTSSKFKHCLDLVGIL 842
            RTKHI+++YH+VR+ V++G + V KI+T DN ADM+TKPV  +KF+ C  LVGI+
Sbjct: 238  RTKHIDIKYHYVRDVVAQGKLKVCKISTHDNPADMMTKPVPVAKFELCSSLVGIV 292


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1175

 Score =  364 bits (935), Expect = 6e-98
 Identities = 182/317 (57%), Positives = 240/317 (75%), Gaps = 1/317 (0%)
 Frame = -1

Query: 1789 LIAGSSIAEVNKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVER 1610
            LIA  S  ++  LK QL+SEF+MKDL AAKKILGMEI RDR +  L LSQ+ YIKKV++R
Sbjct: 861  LIAAKSKEQITTLKKQLSSEFDMKDLDAAKKILGMEITRDRNSGWLFLSQQSYIKKVLQR 920

Query: 1609 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHA 1430
            F M   K VST +A HFKLSA     T+E+ EYMSR+PY+  VGSLMYA++C+R D++HA
Sbjct: 921  FNMHDTKPVSTHIAPHFKLSALQCASTDEDVEYMSRVPYSSVVGSLMYAMVCSRLDLSHA 980

Query: 1429 VSVVSRYMANHGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDK 1250
            +S+VSRYMAN GKEHW+A++WI RYL+ T +  L +G       G+IGYVDSD+A DLDK
Sbjct: 981  MSLVSRYMANPGKEHWKAIQWIFRYLRDTANACLKFGRT---NKGLIGYVDSDFAADLDK 1037

Query: 1249 NRSITGYIFTLFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSL-GLDD 1073
             RS+TGY+FT+    +SW+A L+  VA STTEAEYMA++EA KE++W+KGL   L G+  
Sbjct: 1038 RRSLTGYVFTIGSCAVSWKATLRHVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVYS 1097

Query: 1072 QTSIYCDSQSAIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTK 893
              +++CDSQSAI LT++QMFHERTKHI+++YH+VR+ V++G + V KI+T DN  DM+TK
Sbjct: 1098 CINLFCDSQSAICLTKDQMFHERTKHIDIKYHYVRDVVAQGKLKVCKISTHDNPVDMMTK 1157

Query: 892  PVTSSKFKHCLDLVGIL 842
             V  +KF+ C  LVGI+
Sbjct: 1158 HVPVAKFELCSSLVGIV 1174


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  363 bits (931), Expect = 2e-97
 Identities = 182/319 (57%), Positives = 232/319 (72%), Gaps = 1/319 (0%)
 Frame = -1

Query: 1789 LIAGSSIAEVNKLKAQLNSEFEMKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVER 1610
            L+ G +   V +LKAQL  EF+MKDLG A KILGM+IHRDRK +K+ LSQ+ Y++KV+ R
Sbjct: 990  LVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLQKVLRR 1049

Query: 1609 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHA 1430
            F M     +STPL  ++KLS+ + P +E E   MSR+PYA AVGSLMYA+ICTRPDIA A
Sbjct: 1050 FNMQDYNPISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSLMYAMICTRPDIAQA 1109

Query: 1429 VSVVSRYMANHGKEHWQAVKWILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDK 1250
            V  VSR+MA+ GKEHW AVK ILRY++GT    L +G +   +  I GYVDSD+AGDLDK
Sbjct: 1110 VGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCFGGS---EFTIRGYVDSDFAGDLDK 1166

Query: 1249 NRSITGYIFTLFGGVISWRAVLQSTVALSTTEAEYMALSEAAKEALWMKGLVRSLGLDDQ 1070
             +S TGY+FTL GG +SW + LQ+ VALSTTEAEYMA ++A KEA+W + L+  LG   Q
Sbjct: 1167 RKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWTQRLLEELGHKQQ 1226

Query: 1069 -TSIYCDSQSAIHLTENQMFHERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTK 893
              ++YCDS SA+H+  N  FH RTKHI V+YHFVRE V  G + ++KI TKDNLAD++TK
Sbjct: 1227 KITVYCDSPSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVNMQKIHTKDNLADVMTK 1286

Query: 892  PVTSSKFKHCLDLVGILDT 836
            P+ S KF  C    G+L+T
Sbjct: 1287 PINSDKFIWCRSSYGLLET 1305


>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
          Length = 297

 Score =  363 bits (931), Expect = 2e-97
 Identities = 177/296 (59%), Positives = 233/296 (78%), Gaps = 2/296 (0%)
 Frame = -1

Query: 1723 MKDLGAAKKILGMEIHRDRKAKKLHLSQRQYIKKVVERFGMD-KAKHVSTPLAAHFKLSA 1547
            MK LG A++ILGM+I RD+K + + L+Q+ Y+KKV+ERFGMD K K V TPLA HFKLS+
Sbjct: 1    MKGLGDAQRILGMKIRRDKKNESVWLTQKSYLKKVLERFGMDDKTKLVCTPLALHFKLSS 60

Query: 1546 KLSPQTEEEEEYMSRIPYARAVGSLMYAIICTRPDIAHAVSVVSRYMANHGKEHWQAVKW 1367
               P+++EE +YM+ +PYA  VGSL+YA++CTRPDI+ AVS+VSRYM N GK  W AVKW
Sbjct: 61   SSCPRSQEERDYMACVPYASVVGSLIYAMVCTRPDISQAVSMVSRYMHNPGKSQWLAVKW 120

Query: 1366 ILRYLKGTVDLDLTYGENISIQDGIIGYVDSDYAGDLDKNRSITGYIFTLFGGVISWRAV 1187
            ILRYL GTVD+ L + +N   Q   +GY DSD+AGDLDK RS +GY+FTL GG +SWR++
Sbjct: 121  ILRYLYGTVDVGLLFKKNCGQQ--CVGYCDSDFAGDLDKQRSTSGYVFTLGGGSVSWRSI 178

Query: 1186 LQSTVALSTTEAEYMALSEAAKEALWMKGLVRSLG-LDDQTSIYCDSQSAIHLTENQMFH 1010
            LQST+ALSTTEAEY+A +EA KEA+W+KGL+  LG + +  +++CD+QSAI L +NQ +H
Sbjct: 179  LQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQSAIFLAKNQTYH 238

Query: 1009 ERTKHINVRYHFVRECVSRGDMAVKKIATKDNLADMLTKPVTSSKFKHCLDLVGIL 842
             RTKHI+V+YH+VRE +  GD+ +KKI TKDN +DMLTK V+  KF+HCL L+ IL
Sbjct: 239  ARTKHIDVKYHYVREIIEGGDVLLKKIDTKDNPSDMLTKVVSEVKFQHCLKLIQIL 294