BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00001040
         (2275 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   279   7e-74
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     259   8e-69
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   258   7e-68
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]   264   1e-67
emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]   255   1e-66
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   255   3e-66
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]         255   3e-66
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   253   1e-65
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     253   1e-65
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        252   2e-65
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   256   3e-65
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     253   3e-65
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]         249   5e-65
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   255   7e-65
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   255   7e-65
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   255   7e-65
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     252   7e-65
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           254   1e-64
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     250   1e-64
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc...   253   2e-64

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  279 bits (713), Expect(2) = 7e-74
 Identities = 129/185 (69%), Positives = 160/185 (86%)
 Frame = +1

Query: 1708 EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAAEHEGIRYKARLVAKGYTQRYGVD 1887
            +EM+SLHKNQTW+LV  P G+KII CKWVFKKK   +  EG++YKAR+VA+G+ QR GVD
Sbjct: 812  DEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVD 871

Query: 1888 FNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAFLHGELEETIYISQPEGFVVRGKE 2067
            +N++FSPVV+H+SIRVLLA+VA  +LELEQLDVKTAFLHGELEE IY++QP+GF V GKE
Sbjct: 872  YNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKE 931

Query: 2068 DHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSDYDACVYHKRSSDGSFMYLLLYVD 2247
            +HVC LK+SLYGLKQSPRQWYKRFD ++ ++G+ RS YD CVY+ R +D SF+YL+LYVD
Sbjct: 932  NHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVD 991

Query: 2248 DMLIA 2262
            DMLIA
Sbjct: 992  DMLIA 996



 Score = 28.1 bits (61), Expect(2) = 7e-74
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 1643 EPATFDEAMRSSKSKEWIGAM 1705
            EP+T+ EA+ SS S++W  AM
Sbjct: 790  EPSTYKEAILSSDSEKWFAAM 810


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  259 bits (663), Expect(2) = 8e-69
 Identities = 120/185 (64%), Positives = 151/185 (81%)
 Frame = +1

Query: 1708 EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAAEHEGIRYKARLVAKGYTQRYGVD 1887
            EEM+SLHKN  WELV  P  +K++GCKWVF+KK    E + I YKARLVAKGY+Q+ GVD
Sbjct: 803  EEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEGVD 862

Query: 1888 FNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAFLHGELEETIYISQPEGFVVRGKE 2067
            ++++FSPVVKH+SIR+LL++ A+YD+E+EQ+DVKTAFLHG+LEE IY+SQPEGFV  GKE
Sbjct: 863  YDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKE 922

Query: 2068 DHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSDYDACVYHKRSSDGSFMYLLLYVD 2247
            + VC LK+SLYGLKQSPRQWYK FD ++ ++G+ R  YD CVY+    DG  + LLLYVD
Sbjct: 923  NLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFEDGKVILLLLYVD 982

Query: 2248 DMLIA 2262
            DMLIA
Sbjct: 983  DMLIA 987



 Score = 30.4 bits (67), Expect(2) = 8e-69
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 1643 EPATFDEAMRSSKSKEWIGAMTKK 1714
            +P T+++A+ S +S  WIGAMT++
Sbjct: 781  DPTTYEDAIESVESAGWIGAMTEE 804


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  258 bits (660), Expect(2) = 7e-68
 Identities = 125/189 (66%), Positives = 149/189 (78%)
 Frame = +1

Query: 1705 DEEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAAEHEGIRYKARLVAKGYTQRYGV 1884
            D+EM SL KNQTWELV  P G K + CKW+FK K   +  E  +YK+RLVAKG++Q+ G+
Sbjct: 934  DDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXDEPPKYKSRLVAKGFSQKEGI 993

Query: 1885 DFNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAFLHGELEETIYISQPEGFVVRGK 2064
            D+N+VFSPVVKH SIRVLLA+V+ ++LEL+QLDVKTAFLHG LEE IY+ QPEGFV   K
Sbjct: 994  DYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEK 1053

Query: 2065 EDHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSDYDACVYHKRSSDGSFMYLLLYV 2244
             DHVC LK+SLYGLKQSPRQWYKRFD F+    F R+ YD+CVY K   DGSF+YLLLYV
Sbjct: 1054 SDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYV 1113

Query: 2245 DDMLIAGSS 2271
            DDMLIA  +
Sbjct: 1114 DDMLIAAKN 1122



 Score = 28.5 bits (62), Expect(2) = 7e-68
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 1640 DEPATFDEAMRSSKSKEWIGAM 1705
            +EP ++ EAM S  SK+W+ +M
Sbjct: 912  EEPRSYKEAMESKDSKKWLSSM 933


>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
          Length = 939

 Score =  264 bits (674), Expect = 1e-67
 Identities = 125/189 (66%), Positives = 156/189 (82%)
 Frame = +1

Query: 1708 EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAAEHEGIRYKARLVAKGYTQRYGVD 1887
            EE +SL KN TW+LV  P G K++GCKWVFKKK+     E  R+KA LVAK YTQR G+D
Sbjct: 479  EEFESLLKNGTWQLVDKPKGCKVVGCKWVFKKKLGIPHVEPERFKATLVAKAYTQREGMD 538

Query: 1888 FNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAFLHGELEETIYISQPEGFVVRGKE 2067
            FN++FSP+VKH+SIRVLLALV+ ++LEL Q+DV  AFLHGELEE I++ QP+GF+V+GKE
Sbjct: 539  FNEIFSPMVKHTSIRVLLALVSLWNLELXQMDVNRAFLHGELEEEIFMQQPKGFIVKGKE 598

Query: 2068 DHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSDYDACVYHKRSSDGSFMYLLLYVD 2247
            + VCLLKRSLYGLKQSPRQWYKRFD F+T VG+ RS +D CVY ++ ++GS++YLLLYVD
Sbjct: 599  NQVCLLKRSLYGLKQSPRQWYKRFDKFMTSVGYSRSKFDNCVYMRKLTNGSYVYLLLYVD 658

Query: 2248 DMLIAGSSI 2274
            DML+A  SI
Sbjct: 659  DMLLASKSI 667


>emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]
          Length = 595

 Score =  255 bits (651), Expect(2) = 1e-66
 Identities = 117/190 (61%), Positives = 156/190 (82%), Gaps = 1/190 (0%)
 Frame = +1

Query: 1708 EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAAEHEGIRYKARLVAKGYTQRYGVD 1887
            EE++ LHKNQTW+LV+PP G++ IGCKWV+KKK   ++ EG ++KARLVAKGY+QR GVD
Sbjct: 182  EEIQFLHKNQTWDLVEPPEGKRAIGCKWVYKKKEAISKKEGEKFKARLVAKGYSQRKGVD 241

Query: 1888 FNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAFLHGELEETIYISQPEGFVVRGKE 2067
            ++++FSP+V+H+SIR +L LVA +D++LEQ+DV+T FLHG+LEE +Y+ QPEGF+  G+E
Sbjct: 242  YDEIFSPMVRHTSIRTVLGLVAHFDMQLEQMDVETTFLHGDLEELVYMVQPEGFIQPGQE 301

Query: 2068 DHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSDYDACVYHKR-SSDGSFMYLLLYV 2244
              VC L++SLYGLKQSPRQWYK FD +I R+G+KR +YD  VY K    D SF++LLLYV
Sbjct: 302  HLVCKLRKSLYGLKQSPRQWYKCFDSYIIRIGYKRCEYDCFVYVKSLDDDSSFIFLLLYV 361

Query: 2245 DDMLIAGSSI 2274
            DDMLIA  S+
Sbjct: 362  DDMLIAAKSM 371



 Score = 27.7 bits (60), Expect(2) = 1e-66
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 1643 EPATFDEAMRSSKSKEWIGAMTKK 1714
            +P TF EA+ + +   W+GAM ++
Sbjct: 160  DPITFQEAIHNQEKSRWMGAMVEE 183


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  255 bits (652), Expect(2) = 3e-66
 Identities = 127/185 (68%), Positives = 150/185 (81%)
 Frame = +1

Query: 1708 EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAAEHEGIRYKARLVAKGYTQRYGVD 1887
            +EM+SL KN TWELVK P  +K I CKW+FK+K   +  +  RYKARL+AKGY+Q  G+D
Sbjct: 1044 DEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGID 1103

Query: 1888 FNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAFLHGELEETIYISQPEGFVVRGKE 2067
            FN VFSPVVKHSSIR LL++VA +D ELEQ+DVKTAFLHGELEE IY+ QP+GFVV GKE
Sbjct: 1104 FNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKE 1163

Query: 2068 DHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSDYDACVYHKRSSDGSFMYLLLYVD 2247
            + VC LK+SLYGLKQSPRQWYKRFD F+    F+RS+YD+CVY K   DGS +YLLLYVD
Sbjct: 1164 NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLK-VVDGSAIYLLLYVD 1222

Query: 2248 DMLIA 2262
            DMLIA
Sbjct: 1223 DMLIA 1227



 Score = 26.2 bits (56), Expect(2) = 3e-66
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 1613 AVSEDTCFDDEPATFDEAMRSSKSKEWIGAM 1705
            +V+E+   + EP+T+ EA+ S     WI AM
Sbjct: 1012 SVAEEIEGNAEPSTYSEAIVSDDCNRWITAM 1042


>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
          Length = 621

 Score =  255 bits (652), Expect(2) = 3e-66
 Identities = 128/185 (69%), Positives = 150/185 (81%)
 Frame = +1

Query: 1708 EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAAEHEGIRYKARLVAKGYTQRYGVD 1887
            +EM+SL KN TWELVK P  +K I CKW+FK+K   +  +   YKARLVAKGY+Q  G+D
Sbjct: 223  DEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKECISPSDEAMYKARLVAKGYSQIPGID 282

Query: 1888 FNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAFLHGELEETIYISQPEGFVVRGKE 2067
            FN VFSPVVKHSSIR LL++VA +D ELEQ+DVKTAFLHGELEE IY+ QPEGFVV GKE
Sbjct: 283  FNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKE 342

Query: 2068 DHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSDYDACVYHKRSSDGSFMYLLLYVD 2247
            + VC LK+SLYGLKQSPRQWYKRFD F+    F+RS+YD+CVY K  +DGS +YLLLYVD
Sbjct: 343  NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYVK-VADGSAIYLLLYVD 401

Query: 2248 DMLIA 2262
            DMLIA
Sbjct: 402  DMLIA 406



 Score = 26.2 bits (56), Expect(2) = 3e-66
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 1613 AVSEDTCFDDEPATFDEAMRSSKSKEWIGAM 1705
            +V+E+   + EP+T+ EA+ S     WI AM
Sbjct: 191  SVAEEIEGNAEPSTYSEAIVSDDCNRWITAM 221


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  253 bits (646), Expect(2) = 1e-65
 Identities = 126/185 (68%), Positives = 148/185 (80%)
 Frame = +1

Query: 1708 EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAAEHEGIRYKARLVAKGYTQRYGVD 1887
            +EM+SL KN TWE VK P  +K I CKW+FK+K   +  +  RYKARLVAKGY+Q  G+D
Sbjct: 872  DEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGID 931

Query: 1888 FNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAFLHGELEETIYISQPEGFVVRGKE 2067
            FN VFSP++KHSSIR LL +VA +D ELEQ+DVKTAFLHGELEE IY+ QPEGFVV GKE
Sbjct: 932  FNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKE 991

Query: 2068 DHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSDYDACVYHKRSSDGSFMYLLLYVD 2247
            + VC LK+SLYGLKQSPRQWYKRFD F+    F+RS+YD+CVY K   DGS +YLLLYVD
Sbjct: 992  NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLK-VVDGSAIYLLLYVD 1050

Query: 2248 DMLIA 2262
            DMLIA
Sbjct: 1051 DMLIA 1055



 Score = 26.2 bits (56), Expect(2) = 1e-65
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 1613 AVSEDTCFDDEPATFDEAMRSSKSKEWIGAM 1705
            +V+E+   + EP+T+ EA+ S     WI AM
Sbjct: 840  SVAEEIEGNAEPSTYSEAIVSDDCNRWITAM 870


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  253 bits (646), Expect(2) = 1e-65
 Identities = 126/185 (68%), Positives = 148/185 (80%)
 Frame = +1

Query: 1708 EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAAEHEGIRYKARLVAKGYTQRYGVD 1887
            +EM+SL KN TWE VK P  +K I CKW+FK+K   +  +  RYKARLVAKGY+Q  G+D
Sbjct: 872  DEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGID 931

Query: 1888 FNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAFLHGELEETIYISQPEGFVVRGKE 2067
            FN VFSP++KHSSIR LL +VA +D ELEQ+DVKTAFLHGELEE IY+ QPEGFVV GKE
Sbjct: 932  FNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKE 991

Query: 2068 DHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSDYDACVYHKRSSDGSFMYLLLYVD 2247
            + VC LK+SLYGLKQSPRQWYKRFD F+    F+RS+YD+CVY K   DGS +YLLLYVD
Sbjct: 992  NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLK-VVDGSAIYLLLYVD 1050

Query: 2248 DMLIA 2262
            DMLIA
Sbjct: 1051 DMLIA 1055



 Score = 26.2 bits (56), Expect(2) = 1e-65
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 1613 AVSEDTCFDDEPATFDEAMRSSKSKEWIGAM 1705
            +V+E+   + EP+T+ EA+ S     WI AM
Sbjct: 840  SVAEEIEGNAEPSTYSEAIVSDDCNRWITAM 870


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  252 bits (643), Expect(2) = 2e-65
 Identities = 119/185 (64%), Positives = 147/185 (79%)
 Frame = +1

Query: 1708 EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAAEHEGIRYKARLVAKGYTQRYGVD 1887
            +EM+SL +NQTW L+  P  +++I CKW+FK+     + E  +YKARLVA+G+TQR GVD
Sbjct: 835  DEMESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKARLVARGFTQREGVD 894

Query: 1888 FNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAFLHGELEETIYISQPEGFVVRGKE 2067
            FN++FSPVVKHSSIR+LLA+VA  DLELEQ+DVKTAFLHG LEE I ++QPEGF  + KE
Sbjct: 895  FNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKE 954

Query: 2068 DHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSDYDACVYHKRSSDGSFMYLLLYVD 2247
            D+VCLL +SLYGLKQSPRQWY+RFD F+   G++RS YD+CVY   S  G   YLLLYVD
Sbjct: 955  DYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLLYVD 1014

Query: 2248 DMLIA 2262
            DMLIA
Sbjct: 1015 DMLIA 1019



 Score = 26.9 bits (58), Expect(2) = 2e-65
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 1640 DEPATFDEAMRSSKSKEWIGAM 1705
            +EPA F EAM S    +W+ AM
Sbjct: 812  EEPANFSEAMESVHCDKWLEAM 833


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  256 bits (654), Expect = 3e-65
 Identities = 128/188 (68%), Positives = 151/188 (80%)
 Frame = +1

Query: 1708 EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAAEHEGIRYKARLVAKGYTQRYGVD 1887
            EEM+SL KN TWELV  P  +K + CKW+FK+K   +  E  R+KARLVAKG++Q  GVD
Sbjct: 827  EEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKARLVAKGFSQIVGVD 886

Query: 1888 FNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAFLHGELEETIYISQPEGFVVRGKE 2067
            +N VFSPVVKHSSIR   ++VA +DLELEQLDVKTAFLHGELEE IY+ QPEGF+V GKE
Sbjct: 887  YNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKE 946

Query: 2068 DHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSDYDACVYHKRSSDGSFMYLLLYVD 2247
            D+VC LKRSLYGLKQSPRQWYKRFD F+   GFKRS++D+CVY K   +GS +YLLLYVD
Sbjct: 947  DYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIK-FVNGSPIYLLLYVD 1005

Query: 2248 DMLIAGSS 2271
            D+LIA  S
Sbjct: 1006 DILIAAKS 1013


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  253 bits (646), Expect(2) = 3e-65
 Identities = 127/185 (68%), Positives = 149/185 (80%)
 Frame = +1

Query: 1708 EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAAEHEGIRYKARLVAKGYTQRYGVD 1887
            +EM+SL KN +WEL K P  +K I CKW+FK+K   +  +  RYKARLVAKGY+Q  G+D
Sbjct: 746  DEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGID 805

Query: 1888 FNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAFLHGELEETIYISQPEGFVVRGKE 2067
            FN VFSPVVKHSSIR LL++VA +D ELEQ+DVKTAFLHGELEE IY+ QPEGFVV GKE
Sbjct: 806  FNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKE 865

Query: 2068 DHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSDYDACVYHKRSSDGSFMYLLLYVD 2247
            + VC LK+SLYGLKQSPRQWYKRFD F+    F+RS+YD+CVY K   DGS +YLLLYVD
Sbjct: 866  NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLK-VVDGSAIYLLLYVD 924

Query: 2248 DMLIA 2262
            DMLIA
Sbjct: 925  DMLIA 929



 Score = 25.0 bits (53), Expect(2) = 3e-65
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 1613 AVSEDTCFDDEPATFDEAMRSSKSKEWIGAM 1705
            +V+E+   + EP+T+ +A+ S     WI AM
Sbjct: 714  SVAEEIEGNAEPSTYSDAIVSDDCNRWITAM 744


>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
          Length = 1007

 Score =  249 bits (637), Expect(2) = 5e-65
 Identities = 126/185 (68%), Positives = 148/185 (80%)
 Frame = +1

Query: 1708 EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAAEHEGIRYKARLVAKGYTQRYGVD 1887
            +EM+SL KN TWELVK P  +K I CKW+FK+K   +  +   YKARLVAKGY+Q  G+D
Sbjct: 619  DEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGISPSDEAMYKARLVAKGYSQIPGID 678

Query: 1888 FNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAFLHGELEETIYISQPEGFVVRGKE 2067
            FN VFSPVVKHSSIR LL++VA +D ELEQ+DVKTAFLHGELEE IY+ Q EGFVV GKE
Sbjct: 679  FNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQSEGFVVPGKE 738

Query: 2068 DHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSDYDACVYHKRSSDGSFMYLLLYVD 2247
            + VC LK+SLYGLKQS RQWYKRFD F+    F+RS+YD+CVY K  +DGS +YLLLYVD
Sbjct: 739  NLVCRLKKSLYGLKQSSRQWYKRFDSFMLSQKFRRSNYDSCVYVK-VADGSAIYLLLYVD 797

Query: 2248 DMLIA 2262
            DMLIA
Sbjct: 798  DMLIA 802



 Score = 27.7 bits (60), Expect(2) = 5e-65
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 1613 AVSEDTCFDDEPATFDEAMRSSKSKEWIGAM 1705
            +V+ED   + EP+T+ EA+ S     WI AM
Sbjct: 587  SVAEDIEGNAEPSTYSEAIVSDDCNRWITAM 617


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  255 bits (651), Expect = 7e-65
 Identities = 134/211 (63%), Positives = 154/211 (72%), Gaps = 9/211 (4%)
 Frame = +1

Query: 1666 HEVK*IKGVDRCHD---------EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAA 1818
            HE    K   RC D         EEM+SL KN TWE+V  P  +K I CKW+FK+K   +
Sbjct: 815  HEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLS 874

Query: 1819 EHEGIRYKARLVAKGYTQRYGVDFNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAF 1998
              E  +YKARLVA+GY+Q  GVD+N VFSPVVKHSSIR  L++VA +DLELEQLDVKTAF
Sbjct: 875  SSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAF 934

Query: 1999 LHGELEETIYISQPEGFVVRGKEDHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSD 2178
            LHGELEE IY+ QPEGF+V GKE +VC LKRSLYGLKQSPRQW KRFD F+    FKRS 
Sbjct: 935  LHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSK 994

Query: 2179 YDACVYHKRSSDGSFMYLLLYVDDMLIAGSS 2271
            YD+CVY K   +GS +YLLLYVDDMLIA  S
Sbjct: 995  YDSCVYIKH-VNGSPIYLLLYVDDMLIAAKS 1024


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  255 bits (651), Expect = 7e-65
 Identities = 134/211 (63%), Positives = 154/211 (72%), Gaps = 9/211 (4%)
 Frame = +1

Query: 1666 HEVK*IKGVDRCHD---------EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAA 1818
            HE    K   RC D         EEM+SL KN TWE+V  P  +K I CKW+FK+K   +
Sbjct: 815  HEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLS 874

Query: 1819 EHEGIRYKARLVAKGYTQRYGVDFNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAF 1998
              E  +YKARLVA+GY+Q  GVD+N VFSPVVKHSSIR  L++VA +DLELEQLDVKTAF
Sbjct: 875  SSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAF 934

Query: 1999 LHGELEETIYISQPEGFVVRGKEDHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSD 2178
            LHGELEE IY+ QPEGF+V GKE +VC LKRSLYGLKQSPRQW KRFD F+    FKRS 
Sbjct: 935  LHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSK 994

Query: 2179 YDACVYHKRSSDGSFMYLLLYVDDMLIAGSS 2271
            YD+CVY K   +GS +YLLLYVDDMLIA  S
Sbjct: 995  YDSCVYIKH-VNGSPIYLLLYVDDMLIAAKS 1024


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  255 bits (651), Expect = 7e-65
 Identities = 134/211 (63%), Positives = 154/211 (72%), Gaps = 9/211 (4%)
 Frame = +1

Query: 1666 HEVK*IKGVDRCHD---------EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAA 1818
            HE    K   RC D         EEM+SL KN TWE+V  P  +K I CKW+FK+K   +
Sbjct: 815  HEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLS 874

Query: 1819 EHEGIRYKARLVAKGYTQRYGVDFNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAF 1998
              E  +YKARLVA+GY+Q  GVD+N VFSPVVKHSSIR  L++VA +DLELEQLDVKTAF
Sbjct: 875  SSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAF 934

Query: 1999 LHGELEETIYISQPEGFVVRGKEDHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSD 2178
            LHGELEE IY+ QPEGF+V GKE +VC LKRSLYGLKQSPRQW KRFD F+    FKRS 
Sbjct: 935  LHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSK 994

Query: 2179 YDACVYHKRSSDGSFMYLLLYVDDMLIAGSS 2271
            YD+CVY K   +GS +YLLLYVDDMLIA  S
Sbjct: 995  YDSCVYIKH-VNGSPIYLLLYVDDMLIAAKS 1024


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  252 bits (643), Expect(2) = 7e-65
 Identities = 127/185 (68%), Positives = 148/185 (80%)
 Frame = +1

Query: 1708 EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAAEHEGIRYKARLVAKGYTQRYGVD 1887
            +EM+SL KN TWELVK P  +K I CKW+FK+K   +  +  RYKARLVAKGY+Q  G+D
Sbjct: 809  DEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGID 868

Query: 1888 FNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAFLHGELEETIYISQPEGFVVRGKE 2067
            FN VFSPVVKHSSIR LL +VA +D ELEQ++VKTAFLHGELEE IY+ QPEGFVV GKE
Sbjct: 869  FNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKE 928

Query: 2068 DHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSDYDACVYHKRSSDGSFMYLLLYVD 2247
            + VC LK+SLYGLKQSPRQWYKRFD F+    F+ S+YD+CVY K   DGS +YLLLYVD
Sbjct: 929  NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVYLK-VVDGSVIYLLLYVD 987

Query: 2248 DMLIA 2262
            DMLIA
Sbjct: 988  DMLIA 992



 Score = 25.0 bits (53), Expect(2) = 7e-65
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 1613 AVSEDTCFDDEPATFDEAMRSSKSKEWIGAM 1705
            +V+E    + EP+T+ EA+ S     WI AM
Sbjct: 777  SVAEKIEGNAEPSTYSEAIVSDDCNRWITAM 807


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  254 bits (649), Expect = 1e-64
 Identities = 134/211 (63%), Positives = 154/211 (72%), Gaps = 9/211 (4%)
 Frame = +1

Query: 1666 HEVK*IKGVDRCHD---------EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAA 1818
            HE    K   RC D         EEM+SL KN TWE+V  P  +K I CKW+FK+K   +
Sbjct: 817  HEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALS 876

Query: 1819 EHEGIRYKARLVAKGYTQRYGVDFNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAF 1998
              E  +YKARLVA+GY+Q  GVD+N VFSPVVKHSSIR  L++VA +DLELEQLDVKTAF
Sbjct: 877  LSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAF 936

Query: 1999 LHGELEETIYISQPEGFVVRGKEDHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSD 2178
            LHGELEE IY+ QPEGF+V GKE +VC LKRSLYGLKQSPRQW KRFD F+    FKRS 
Sbjct: 937  LHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSK 996

Query: 2179 YDACVYHKRSSDGSFMYLLLYVDDMLIAGSS 2271
            YD+CVY K   +GS +YLLLYVDDMLIA  S
Sbjct: 997  YDSCVYIKH-VNGSPIYLLLYVDDMLIAAKS 1026


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  250 bits (639), Expect(2) = 1e-64
 Identities = 127/185 (68%), Positives = 149/185 (80%)
 Frame = +1

Query: 1708 EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAAEHEGIRYKARLVAKGYTQRYGVD 1887
            +EM+SL KN TWELVK P  +K I CKW+FK+K   +  +  RYKARLVAKGY+Q  G+D
Sbjct: 716  DEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGMSPSDEARYKARLVAKGYSQIPGID 775

Query: 1888 FNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAFLHGELEETIYISQPEGFVVRGKE 2067
            FN VFSPV+KHSSIR LL++VA +D ELEQ+DVKTAFLHGELEE IY+ QPEGFVV GKE
Sbjct: 776  FNDVFSPVLKHSSIRTLLSIVAVHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKE 835

Query: 2068 DHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSDYDACVYHKRSSDGSFMYLLLYVD 2247
            + V  LK+SLYGLKQSPRQWYKRFD F+    F+RS+YD+CVY K   DGS +YLLLYVD
Sbjct: 836  NLVYRLKKSLYGLKQSPRQWYKRFDSFMFSQKFRRSNYDSCVYLK-VVDGSSIYLLLYVD 894

Query: 2248 DMLIA 2262
            DMLIA
Sbjct: 895  DMLIA 899



 Score = 25.8 bits (55), Expect(2) = 1e-64
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 1613 AVSEDTCFDDEPATFDEAMRSSKSKEWIGAM 1705
            +V+E+   + EP+T+ EA+ S     WI AM
Sbjct: 684  SVAEEIEGNAEPSTYSEAIVSDGCNRWITAM 714


>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 983

 Score =  253 bits (647), Expect(2) = 2e-64
 Identities = 127/185 (68%), Positives = 148/185 (80%)
 Frame = +1

Query: 1708 EEMKSLHKNQTWELVKPPVGQKIIGCKWVFKKKVQAAEHEGIRYKARLVAKGYTQRYGVD 1887
            +EM+SL KN TWELVK P  +K I CKW+FK+K   +  +  RYKARLVAKGY+Q   +D
Sbjct: 579  DEMESLEKNHTWELVKLPKEKKSIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPSID 638

Query: 1888 FNQVFSPVVKHSSIRVLLALVARYDLELEQLDVKTAFLHGELEETIYISQPEGFVVRGKE 2067
            FN VFSP+VKHSSIR LL++VA +D ELEQ+DVKTAFLHGELEE IY+ QPEGFVV GKE
Sbjct: 639  FNDVFSPIVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKE 698

Query: 2068 DHVCLLKRSLYGLKQSPRQWYKRFDGFITRVGFKRSDYDACVYHKRSSDGSFMYLLLYVD 2247
            + VC LK+SLYGLKQSPRQWYKRFD F+    F+RS+YD CVY K   DGS +YLLLYVD
Sbjct: 699  NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDNCVYLK-VVDGSAIYLLLYVD 757

Query: 2248 DMLIA 2262
            DMLIA
Sbjct: 758  DMLIA 762



 Score = 22.3 bits (46), Expect(2) = 2e-64
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 1613 AVSEDTCFDDEPATFDEAMRSSKSKEWIGAM 1705
            +V+E+   + EP+ + EA+ S     WI  M
Sbjct: 547  SVAEEIEGNAEPSIYSEAIVSDDCNRWITTM 577