BLASTX nr result

ID: Rauwolfia21_contig00000967 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00000967
         (273 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001234135.1| SKIP5-like protein [Solanum lycopersicum] gi...    63   5e-08
ref|XP_006350998.1| PREDICTED: F-box protein SKIP5-like [Solanum...    62   8e-08
ref|XP_002513076.1| conserved hypothetical protein [Ricinus comm...    57   2e-06
ref|XP_004142419.1| PREDICTED: F-box protein SKIP5-like [Cucumis...    55   1e-05

>ref|NP_001234135.1| SKIP5-like protein [Solanum lycopersicum]
           gi|15777895|gb|AAL05932.1| SKIP5-like protein [Solanum
           lycopersicum]
          Length = 265

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 28/40 (70%), Positives = 33/40 (82%)
 Frame = -3

Query: 121 MEAETRKWKRFAKQSTANSHVNNLDDGCLMHIFSFLSPIP 2
           ME + RKW+R +K ST  S +N+LDDGCLMHIFSFLSPIP
Sbjct: 1   MEVQKRKWRRISKISTDISLINSLDDGCLMHIFSFLSPIP 40


>ref|XP_006350998.1| PREDICTED: F-box protein SKIP5-like [Solanum tuberosum]
          Length = 265

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 28/40 (70%), Positives = 32/40 (80%)
 Frame = -3

Query: 121 MEAETRKWKRFAKQSTANSHVNNLDDGCLMHIFSFLSPIP 2
           ME + RKW+R +K ST  S +N LDDGCLMHIFSFLSPIP
Sbjct: 1   MEEQKRKWRRISKISTDFSLINRLDDGCLMHIFSFLSPIP 40


>ref|XP_002513076.1| conserved hypothetical protein [Ricinus communis]
           gi|223548087|gb|EEF49579.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 250

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 27/39 (69%), Positives = 30/39 (76%)
 Frame = -3

Query: 118 EAETRKWKRFAKQSTANSHVNNLDDGCLMHIFSFLSPIP 2
           +AE  KWKR  K+   N  +NNLDDGCLMHIFSFLSPIP
Sbjct: 3   KAEKGKWKRKKKEGD-NCRINNLDDGCLMHIFSFLSPIP 40


>ref|XP_004142419.1| PREDICTED: F-box protein SKIP5-like [Cucumis sativus]
          Length = 272

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 27/39 (69%), Positives = 31/39 (79%)
 Frame = -3

Query: 118 EAETRKWKRFAKQSTANSHVNNLDDGCLMHIFSFLSPIP 2
           E + RKWKR    S++ S VN+LDDGCLMHIFSFLSPIP
Sbjct: 23  ENKQRKWKRKGTSSSSPS-VNSLDDGCLMHIFSFLSPIP 60