BLASTX nr result

ID: Perilla23_contig00024753 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Perilla23_contig00024753
         (376 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011470534.1| PREDICTED: uncharacterized protein LOC105353...    57   4e-06
ref|XP_007010390.1| Retrotransposon, unclassified-like protein [...    56   9e-06

>ref|XP_011470534.1| PREDICTED: uncharacterized protein LOC105353242 [Fragaria vesca
            subsp. vesca]
          Length = 1179

 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
 Frame = -2

Query: 261  VNWQPPLELCVKLNSDGLFDSSQQAAAGGGLLQDHRDELITSYCLPLQASSSFEVEFRSL 82
            VNW PP   C+KLN+DG + SS   A  GG+ +D+  +++ ++C  L   SS   E  ++
Sbjct: 1013 VNWHPPPYGCIKLNTDGAWKSSSNKAGYGGVFRDYSGKVMGAFCSNLDIPSSVAAEVMAV 1072

Query: 81   L*GLFLL-PQTASHVWIKLDTAAVVTVI 1
            +  + L   +   H+W+++D+  V++ +
Sbjct: 1073 IKAIELAWVREWKHIWLEVDSELVLSFL 1100


>ref|XP_007010390.1| Retrotransposon, unclassified-like protein [Theobroma cacao]
            gi|508727303|gb|EOY19200.1| Retrotransposon,
            unclassified-like protein [Theobroma cacao]
          Length = 1368

 Score = 56.2 bits (134), Expect = 9e-06
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
 Frame = -2

Query: 273  RSRTVNWQPPLELCVKLNSDGLFDSSQQAAAGGGLLQDHRDELITSYCLPLQASSSFEVE 94
            R + +NW  PL   +KLN DG      Q AAGGG+L+DH   LI  +       +S + E
Sbjct: 1166 RPKIINWIKPLIGELKLNVDGSSKDEFQNAAGGGVLRDHTGNLIFGFSENFGYQNSLQAE 1225

Query: 93   FRSLL*GLFL-LPQTASHVWIKLDTAAVVTVI 1
              +L  GL L +    S VWI++D   V+ +I
Sbjct: 1226 LLALHRGLCLCMEYNVSRVWIEVDAQVVIQMI 1257


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