BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Perilla23_contig00024712
         (1450 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012837864.1| PREDICTED: DNA-directed RNA polymerase 3B, c...   599   e-168
ref|XP_011069585.1| PREDICTED: DNA-directed RNA polymerase 3B, c...   596   e-167
ref|XP_011069584.1| PREDICTED: DNA-directed RNA polymerase 3B, c...   596   e-167
ref|XP_011069583.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   596   e-167
gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Erythra...   570   e-160
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   514   e-143
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   513   e-142
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...   510   e-141
ref|NP_001289533.1| DNA-directed RNA polymerase 3, chloroplastic...   504   e-140
ref|XP_009608694.1| PREDICTED: DNA-directed RNA polymerase 3B, c...   498   e-138
gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]       478   e-132
ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prun...   434   e-119
ref|XP_008243031.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   434   e-118
ref|XP_009366215.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   423   e-115
ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast ...   422   e-115
ref|XP_008452554.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   422   e-115
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   421   e-115
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   420   e-114
gb|KHG29144.1| DNA-directed RNA polymerase 3, chloroplastic -lik...   419   e-114
gb|KJB53874.1| hypothetical protein B456_009G009300 [Gossypium r...   415   e-113

>ref|XP_012837864.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic [Erythranthe
            guttatus]
          Length = 953

 Score =  599 bits (1545), Expect = e-168
 Identities = 297/419 (70%), Positives = 337/419 (80%)
 Frame = -2

Query: 1257 MSTPEIPIVSQNAHFSSSSFPQTLKXXXXXXXXXXXXXPISDATDHIHPGNAENMSNLQV 1078
            MSTPE PI+SQ+  FSSSSFPQ LK             P+SD++D    GN + ++ LQV
Sbjct: 1    MSTPEAPILSQSPQFSSSSFPQNLKLPSLHNPALLLPPPVSDSSDDNFRGNLDKVATLQV 60

Query: 1077 IPNGYPSNLTNESGGRIFIRDPPWISSLFMKSLLFRSKKSSGVKLEFQEMERRKYYMLRR 898
            IPNG+PSN T ES  R+FI+DPPWISSLFMK+LLFRS+   GVK+EFQEMERRKYY+LRR
Sbjct: 61   IPNGFPSNFTKESKDRVFIQDPPWISSLFMKNLLFRSRNRGGVKIEFQEMERRKYYLLRR 120

Query: 897  RQVKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEKEQNLLRS 718
            RQVKAETEAW                +KLAPNLPY KKL+LGWF+P REAIEKEQN  RS
Sbjct: 121  RQVKAETEAWENKVEEYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNTQRS 180

Query: 717  KKNKAAFAPFIDALPADKLAIIVMHKLMALLMMGGKEDRSVRVVEAAIQIGVAIEHEVRI 538
            KKNKAAFAPFIDALPADK+A+IVMHK+M LLMMGGKEDR VRVVEAA+QIGVA+E+EVRI
Sbjct: 181  KKNKAAFAPFIDALPADKMAVIVMHKMMGLLMMGGKEDRCVRVVEAAVQIGVAVENEVRI 240

Query: 537  QSFLXXXXXXXXXXXXXXGQEDPSKEVAILRQRVKSLIKRNRVVEVQKLLRSEEFKSWGR 358
             SFL               Q D S E  I+R+RVKSLIKRNRV+EV KL+RSEEFKSWGR
Sbjct: 241  HSFLEKMKKNEKREIGDESQVDSSNEAVIMRKRVKSLIKRNRVIEVHKLVRSEEFKSWGR 300

Query: 357  DIQAKLGCCLLDLLTQSAYVQPPIDQAADCPPDVRPAFRHIFKIAAREPGQNLVKKYGVI 178
            DIQAKLGCCL++LLTQSAYVQPP++Q+AD PPDVRPAFRHIFKIA R PGQ +VK+YGVI
Sbjct: 301  DIQAKLGCCLIELLTQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRLPGQTIVKRYGVI 360

Query: 177  ECDPLVLDGVDKTVKHMVIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTRGSRRQQDAI 1
            ECDPLVL G+DKTVKHM+IPYVPMLVPPK+WKGYD+GGYLFLPSYLMRT GSR QQDA+
Sbjct: 361  ECDPLVLAGLDKTVKHMIIPYVPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSRHQQDAV 419


>ref|XP_011069585.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X3
            [Sesamum indicum]
          Length = 816

 Score =  596 bits (1536), Expect = e-167
 Identities = 299/419 (71%), Positives = 334/419 (79%)
 Frame = -2

Query: 1257 MSTPEIPIVSQNAHFSSSSFPQTLKXXXXXXXXXXXXXPISDATDHIHPGNAENMSNLQV 1078
            MSTPEIP  SQ+  FSSS FPQTLK             PISD TD   PG  E +S LQV
Sbjct: 1    MSTPEIPSFSQSPQFSSSPFPQTLKLPSIHNPAPLLPPPISDCTDDSFPGKPEKLSTLQV 60

Query: 1077 IPNGYPSNLTNESGGRIFIRDPPWISSLFMKSLLFRSKKSSGVKLEFQEMERRKYYMLRR 898
            +PNG+ SNLT ES GR FI+DPPWISSL+MKSLLFRSK  S VK+EFQE ERRKYY+LRR
Sbjct: 61   MPNGFQSNLTKESSGRGFIQDPPWISSLYMKSLLFRSKNRSEVKIEFQETERRKYYLLRR 120

Query: 897  RQVKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEKEQNLLRS 718
            RQ+KAETEAW                +KLAPNLPY KKL+LGWF+P REAIEKEQN  RS
Sbjct: 121  RQIKAETEAWENMVEEYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNSQRS 180

Query: 717  KKNKAAFAPFIDALPADKLAIIVMHKLMALLMMGGKEDRSVRVVEAAIQIGVAIEHEVRI 538
            KK KAAFAPFIDALPADK+A+IVMHK+M+LLMMGGKEDR VRVVEAA+QIGVAIEHEVRI
Sbjct: 181  KKQKAAFAPFIDALPADKMAVIVMHKIMSLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRI 240

Query: 537  QSFLXXXXXXXXXXXXXXGQEDPSKEVAILRQRVKSLIKRNRVVEVQKLLRSEEFKSWGR 358
             +FL               +ED  KE AILR+RVKSLI+RNRV+EVQKL+R+EE KSW R
Sbjct: 241  HNFLEKTKKYQRKETVAETEEDSKKEAAILRKRVKSLIRRNRVIEVQKLVRNEESKSWSR 300

Query: 357  DIQAKLGCCLLDLLTQSAYVQPPIDQAADCPPDVRPAFRHIFKIAAREPGQNLVKKYGVI 178
            D QAKLGCCL++LLTQSAYVQPP++Q+AD PPDVRPAFRH FKIA RE GQN+VKKYGVI
Sbjct: 301  DTQAKLGCCLIELLTQSAYVQPPVNQSADSPPDVRPAFRHFFKIAPRESGQNVVKKYGVI 360

Query: 177  ECDPLVLDGVDKTVKHMVIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTRGSRRQQDAI 1
            ECDPLVL G+DKTVKHM+IPYVPMLVPPK+WKGYDKGGYLFLPSYLMRT GSR+QQ A+
Sbjct: 361  ECDPLVLTGLDKTVKHMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRKQQKAV 419


>ref|XP_011069584.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X2
            [Sesamum indicum]
          Length = 884

 Score =  596 bits (1536), Expect = e-167
 Identities = 299/419 (71%), Positives = 334/419 (79%)
 Frame = -2

Query: 1257 MSTPEIPIVSQNAHFSSSSFPQTLKXXXXXXXXXXXXXPISDATDHIHPGNAENMSNLQV 1078
            MSTPEIP  SQ+  FSSS FPQTLK             PISD TD   PG  E +S LQV
Sbjct: 1    MSTPEIPSFSQSPQFSSSPFPQTLKLPSIHNPAPLLPPPISDCTDDSFPGKPEKLSTLQV 60

Query: 1077 IPNGYPSNLTNESGGRIFIRDPPWISSLFMKSLLFRSKKSSGVKLEFQEMERRKYYMLRR 898
            +PNG+ SNLT ES GR FI+DPPWISSL+MKSLLFRSK  S VK+EFQE ERRKYY+LRR
Sbjct: 61   MPNGFQSNLTKESSGRGFIQDPPWISSLYMKSLLFRSKNRSEVKIEFQETERRKYYLLRR 120

Query: 897  RQVKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEKEQNLLRS 718
            RQ+KAETEAW                +KLAPNLPY KKL+LGWF+P REAIEKEQN  RS
Sbjct: 121  RQIKAETEAWENMVEEYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNSQRS 180

Query: 717  KKNKAAFAPFIDALPADKLAIIVMHKLMALLMMGGKEDRSVRVVEAAIQIGVAIEHEVRI 538
            KK KAAFAPFIDALPADK+A+IVMHK+M+LLMMGGKEDR VRVVEAA+QIGVAIEHEVRI
Sbjct: 181  KKQKAAFAPFIDALPADKMAVIVMHKIMSLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRI 240

Query: 537  QSFLXXXXXXXXXXXXXXGQEDPSKEVAILRQRVKSLIKRNRVVEVQKLLRSEEFKSWGR 358
             +FL               +ED  KE AILR+RVKSLI+RNRV+EVQKL+R+EE KSW R
Sbjct: 241  HNFLEKTKKYQRKETVAETEEDSKKEAAILRKRVKSLIRRNRVIEVQKLVRNEESKSWSR 300

Query: 357  DIQAKLGCCLLDLLTQSAYVQPPIDQAADCPPDVRPAFRHIFKIAAREPGQNLVKKYGVI 178
            D QAKLGCCL++LLTQSAYVQPP++Q+AD PPDVRPAFRH FKIA RE GQN+VKKYGVI
Sbjct: 301  DTQAKLGCCLIELLTQSAYVQPPVNQSADSPPDVRPAFRHFFKIAPRESGQNVVKKYGVI 360

Query: 177  ECDPLVLDGVDKTVKHMVIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTRGSRRQQDAI 1
            ECDPLVL G+DKTVKHM+IPYVPMLVPPK+WKGYDKGGYLFLPSYLMRT GSR+QQ A+
Sbjct: 361  ECDPLVLTGLDKTVKHMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRKQQKAV 419


>ref|XP_011069583.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X1
            [Sesamum indicum]
          Length = 952

 Score =  596 bits (1536), Expect = e-167
 Identities = 299/419 (71%), Positives = 334/419 (79%)
 Frame = -2

Query: 1257 MSTPEIPIVSQNAHFSSSSFPQTLKXXXXXXXXXXXXXPISDATDHIHPGNAENMSNLQV 1078
            MSTPEIP  SQ+  FSSS FPQTLK             PISD TD   PG  E +S LQV
Sbjct: 1    MSTPEIPSFSQSPQFSSSPFPQTLKLPSIHNPAPLLPPPISDCTDDSFPGKPEKLSTLQV 60

Query: 1077 IPNGYPSNLTNESGGRIFIRDPPWISSLFMKSLLFRSKKSSGVKLEFQEMERRKYYMLRR 898
            +PNG+ SNLT ES GR FI+DPPWISSL+MKSLLFRSK  S VK+EFQE ERRKYY+LRR
Sbjct: 61   MPNGFQSNLTKESSGRGFIQDPPWISSLYMKSLLFRSKNRSEVKIEFQETERRKYYLLRR 120

Query: 897  RQVKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEKEQNLLRS 718
            RQ+KAETEAW                +KLAPNLPY KKL+LGWF+P REAIEKEQN  RS
Sbjct: 121  RQIKAETEAWENMVEEYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNSQRS 180

Query: 717  KKNKAAFAPFIDALPADKLAIIVMHKLMALLMMGGKEDRSVRVVEAAIQIGVAIEHEVRI 538
            KK KAAFAPFIDALPADK+A+IVMHK+M+LLMMGGKEDR VRVVEAA+QIGVAIEHEVRI
Sbjct: 181  KKQKAAFAPFIDALPADKMAVIVMHKIMSLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRI 240

Query: 537  QSFLXXXXXXXXXXXXXXGQEDPSKEVAILRQRVKSLIKRNRVVEVQKLLRSEEFKSWGR 358
             +FL               +ED  KE AILR+RVKSLI+RNRV+EVQKL+R+EE KSW R
Sbjct: 241  HNFLEKTKKYQRKETVAETEEDSKKEAAILRKRVKSLIRRNRVIEVQKLVRNEESKSWSR 300

Query: 357  DIQAKLGCCLLDLLTQSAYVQPPIDQAADCPPDVRPAFRHIFKIAAREPGQNLVKKYGVI 178
            D QAKLGCCL++LLTQSAYVQPP++Q+AD PPDVRPAFRH FKIA RE GQN+VKKYGVI
Sbjct: 301  DTQAKLGCCLIELLTQSAYVQPPVNQSADSPPDVRPAFRHFFKIAPRESGQNVVKKYGVI 360

Query: 177  ECDPLVLDGVDKTVKHMVIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTRGSRRQQDAI 1
            ECDPLVL G+DKTVKHM+IPYVPMLVPPK+WKGYDKGGYLFLPSYLMRT GSR+QQ A+
Sbjct: 361  ECDPLVLTGLDKTVKHMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRKQQKAV 419


>gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Erythranthe guttata]
          Length = 941

 Score =  570 bits (1470), Expect = e-160
 Identities = 288/419 (68%), Positives = 327/419 (78%)
 Frame = -2

Query: 1257 MSTPEIPIVSQNAHFSSSSFPQTLKXXXXXXXXXXXXXPISDATDHIHPGNAENMSNLQV 1078
            MSTPE PI+SQ+  FSSSSFPQ LK             P+SD++D    GN + ++ LQ 
Sbjct: 1    MSTPEAPILSQSPQFSSSSFPQNLKLPSLHNPALLLPPPVSDSSDDNFRGNLDKVATLQ- 59

Query: 1077 IPNGYPSNLTNESGGRIFIRDPPWISSLFMKSLLFRSKKSSGVKLEFQEMERRKYYMLRR 898
                       ES  R+FI+DPPWISSLFMK+LLFRS+   GVK+EFQEMERRKYY+LRR
Sbjct: 60   -----------ESKDRVFIQDPPWISSLFMKNLLFRSRNRGGVKIEFQEMERRKYYLLRR 108

Query: 897  RQVKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEKEQNLLRS 718
            RQVKAETEAW                +KLAPNLPY KKL+LGWF+P REAIEKEQN  RS
Sbjct: 109  RQVKAETEAWENKVEEYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNTQRS 168

Query: 717  KKNKAAFAPFIDALPADKLAIIVMHKLMALLMMGGKEDRSVRVVEAAIQIGVAIEHEVRI 538
            KKNKAAFAPFIDALPADK+A+IVMHK+M LLMMGGKEDR VRVVEAA+QIGVA+E+EVRI
Sbjct: 169  KKNKAAFAPFIDALPADKMAVIVMHKMMGLLMMGGKEDRCVRVVEAAVQIGVAVENEVRI 228

Query: 537  QSFLXXXXXXXXXXXXXXGQEDPSKEVAILRQRVKSLIKRNRVVEVQKLLRSEEFKSWGR 358
             SFL               Q D S E  I+R+RVKSLIKRNRV+EV KL+RSEEFKSWGR
Sbjct: 229  HSFLEKMKKNEKREIGDESQVDSSNEAVIMRKRVKSLIKRNRVIEVHKLVRSEEFKSWGR 288

Query: 357  DIQAKLGCCLLDLLTQSAYVQPPIDQAADCPPDVRPAFRHIFKIAAREPGQNLVKKYGVI 178
            DIQAKLGCCL++LLTQSAYVQPP++Q+AD PPDVRPAFRHIFKIA R PGQ +VK+YGVI
Sbjct: 289  DIQAKLGCCLIELLTQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRLPGQTIVKRYGVI 348

Query: 177  ECDPLVLDGVDKTVKHMVIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTRGSRRQQDAI 1
            ECDPLVL G+DKTVKHM+IPYVPMLVPPK+WKGYD+GGYLFLPSYLMRT GSR QQDA+
Sbjct: 349  ECDPLVLAGLDKTVKHMIIPYVPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSRHQQDAV 407


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score =  514 bits (1323), Expect = e-143
 Identities = 255/404 (63%), Positives = 314/404 (77%), Gaps = 1/404 (0%)
 Frame = -2

Query: 1209 SSSFPQTLKXXXXXXXXXXXXXPISDATDHIHPGNAENMSNLQVIPNGYPSNLTNESGGR 1030
            +SSFP+TLK              +  +TD     N E + NLQ IPNGYP  L  ES  R
Sbjct: 79   TSSFPKTLKLPVIQLPITVHSEVVCVSTDENLTENLEELVNLQKIPNGYPLVLQKESNKR 138

Query: 1029 IFIRDPPWISSLFMKSLLFRSKKSSGVKLEFQEMERRKYY-MLRRRQVKAETEAWXXXXX 853
            +FI+DPPW+SSLFM SL  R+K+  GV+ EF+E+ERR+ Y MLRRRQ+KAETEAW     
Sbjct: 139  VFIQDPPWVSSLFMNSLFVRAKQVKGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVE 198

Query: 852  XXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEKEQNLLRSKKNKAAFAPFIDALP 673
                       +KLAPNLPY KKL+LGWF+P R+AIEKEQN   ++K++ A+AP ID+LP
Sbjct: 199  EYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAEMTQKHRTAYAPHIDSLP 258

Query: 672  ADKLAIIVMHKLMALLMMGGKEDRSVRVVEAAIQIGVAIEHEVRIQSFLXXXXXXXXXXX 493
            ADK+A+IVMHKLM LLMMGGKE+R V+VV+AA+QIG+A+E+EVRI +F+           
Sbjct: 259  ADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQKHMS 318

Query: 492  XXXGQEDPSKEVAILRQRVKSLIKRNRVVEVQKLLRSEEFKSWGRDIQAKLGCCLLDLLT 313
               GQED S+E  ILR+RVKSLIKRNRVVEV+KL++SEE +SWGRD QAKLGC LL+LLT
Sbjct: 319  GAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQSEEPESWGRDTQAKLGCRLLELLT 378

Query: 312  QSAYVQPPIDQAADCPPDVRPAFRHIFKIAAREPGQNLVKKYGVIECDPLVLDGVDKTVK 133
            ++AYVQPP+DQ+AD PPD+RPAFRH+F+IA R+PG+N+VKKYGVIECDPLV+ GVD+TVK
Sbjct: 379  ETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDRTVK 438

Query: 132  HMVIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTRGSRRQQDAI 1
             M+IPYVPMLVPPK+W+GYDKGGYLFLPSYLMRT GSRRQQDA+
Sbjct: 439  QMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAV 482


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Solanum
            lycopersicum]
          Length = 1007

 Score =  513 bits (1322), Expect = e-142
 Identities = 271/484 (55%), Positives = 339/484 (70%), Gaps = 1/484 (0%)
 Frame = -2

Query: 1449 ASLSTLLSTHSRQLHRTPLPSFSPLSPEISSALASTIPFVSSSRAPFYQXXXXXXXXXXP 1270
            ASL++ LS  S  L   P P   PL    S++ + T       +A   Q           
Sbjct: 6    ASLTSQLS--SNFLCSLPYPLSPPLKLASSASYSPTPASSQWRKAQKSQKNCTFHGIYNQ 63

Query: 1269 NFISMSTPEIPIVSQNAHFSSSSFPQTLKXXXXXXXXXXXXXPISDATDHIHPGNAENMS 1090
             F+ +S              +SSFP+TLK              +  +TD     N E + 
Sbjct: 64   EFLKLS-------------QTSSFPKTLKLPIIQLPITVHSEVVCVSTDENLTENLEELV 110

Query: 1089 NLQVIPNGYPSNLTNESGGRIFIRDPPWISSLFMKSLLFRSKKSSGVKLEFQEMERRKYY 910
            NLQ IPNGYP  L  ES  R+FI+DPPW+SSLFM +L  R+K+  GV+ EF+E+ERR+ Y
Sbjct: 111  NLQKIPNGYPLVLQKESNKRVFIQDPPWVSSLFMNNLFVRAKQVKGVRREFREIERRRRY 170

Query: 909  -MLRRRQVKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEKEQ 733
             MLRRRQ+KAETEAW                +KLAPNLPY KKLMLGWF+P R+AIE+EQ
Sbjct: 171  AMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLMLGWFEPLRQAIEREQ 230

Query: 732  NLLRSKKNKAAFAPFIDALPADKLAIIVMHKLMALLMMGGKEDRSVRVVEAAIQIGVAIE 553
            N   ++K++ A+AP ID+LPADK+A+IVMHKLM LLMMGGKE+R V+VV+AA+QIG+A+E
Sbjct: 231  NAEMTQKHRTAYAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVE 290

Query: 552  HEVRIQSFLXXXXXXXXXXXXXXGQEDPSKEVAILRQRVKSLIKRNRVVEVQKLLRSEEF 373
            +EVRI +F+              GQED S+E  ILR+RVKSLIKRNRVVEV+KL++SEE 
Sbjct: 291  NEVRIHNFMEKTKKHQKHMTGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQSEEP 350

Query: 372  KSWGRDIQAKLGCCLLDLLTQSAYVQPPIDQAADCPPDVRPAFRHIFKIAAREPGQNLVK 193
            +SWGRD QAKLGC LL+LLT++AYVQPP+DQ+AD PPD+RPAFRH+F+IA R+PG+N+VK
Sbjct: 351  ESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVK 410

Query: 192  KYGVIECDPLVLDGVDKTVKHMVIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTRGSRRQ 13
            KYGVIECDPLV+ GVD+TVK M+IPYVPMLVPPK+W+GYDKGGYLFLPSYLMRT GSRRQ
Sbjct: 411  KYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQ 470

Query: 12   QDAI 1
            QDA+
Sbjct: 471  QDAV 474


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            [Nicotiana tabacum] gi|21425667|emb|CAC95021.2|
            chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 977

 Score =  510 bits (1313), Expect = e-141
 Identities = 262/426 (61%), Positives = 321/426 (75%), Gaps = 3/426 (0%)
 Frame = -2

Query: 1269 NFISMSTPEIPIVSQNAHFSSSSFPQTLKXXXXXXXXXXXXXP--ISDATDHIHPGNAEN 1096
            NF  +   E   +SQ++  S+SSFP+TLK                +  +TD     N E 
Sbjct: 25   NFYVIHNQEFGKLSQSSSLSTSSFPKTLKLPVIHMPINNIQSQTTVCVSTDE----NLEE 80

Query: 1095 MSNLQVIPNGYPSNLTNESGGRIFIRDPPWISSLFMKSLLFRSKKSSGVKLEFQEMERRK 916
            + NLQ IPNG+   L  ES  R+FI+DPPW+SSLFM SL  R+K+  GV+ EF+E+ERR+
Sbjct: 81   LVNLQKIPNGF---LNKESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRR 137

Query: 915  YY-MLRRRQVKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEK 739
             Y MLRRRQ+KAETEAW                +KLAPNLPY KKL+LGWF+P R+AIEK
Sbjct: 138  RYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEK 197

Query: 738  EQNLLRSKKNKAAFAPFIDALPADKLAIIVMHKLMALLMMGGKEDRSVRVVEAAIQIGVA 559
            EQN   + K++AAFAP ID+LPADK+A+IVMHKLM LLMMGGKE+R V+VV+AA+QIG+A
Sbjct: 198  EQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMA 257

Query: 558  IEHEVRIQSFLXXXXXXXXXXXXXXGQEDPSKEVAILRQRVKSLIKRNRVVEVQKLLRSE 379
            +E+EVRI +FL               QED SKE  ILR+RVKSLIKRNRVVEV+KL++SE
Sbjct: 258  VENEVRIHNFLEKTKKLQKHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKSE 317

Query: 378  EFKSWGRDIQAKLGCCLLDLLTQSAYVQPPIDQAADCPPDVRPAFRHIFKIAAREPGQNL 199
            E +SWGRD QAKLGC LL+LLT++AYVQ P+DQ+AD PPD+RPAFRH+FKIA R+PG+N+
Sbjct: 318  EPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNI 377

Query: 198  VKKYGVIECDPLVLDGVDKTVKHMVIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTRGSR 19
            VKKYGVIECDPLV+ GVD+TVK M+IPYVPMLVPPK+W+GYDKGGYLFLPSYLMRT GSR
Sbjct: 378  VKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSR 437

Query: 18   RQQDAI 1
            RQQDA+
Sbjct: 438  RQQDAV 443


>ref|NP_001289533.1| DNA-directed RNA polymerase 3, chloroplastic [Nicotiana sylvestris]
            gi|59800202|sp|P69242.1|RPOT3_NICSY RecName:
            Full=DNA-directed RNA polymerase 3, chloroplastic;
            AltName: Full=NsRpoT-C; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3;
            Flags: Precursor gi|59800203|sp|P69243.1|RPO3A_TOBAC
            RecName: Full=DNA-directed RNA polymerase 3A,
            chloroplastic; AltName: Full=NictaRpoT3-syl; AltName:
            Full=T7 bacteriophage-type single subunit RNA polymerase
            3A; Flags: Precursor [Nicotiana tabacum]
            gi|21425641|emb|CAC82576.3| phage-type RNA polymerase
            [Nicotiana sylvestris] gi|21425679|emb|CAC95027.2|
            plastid RNA polymerase [Nicotiana tabacum]
            gi|24475541|dbj|BAC22693.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
            gi|24475543|dbj|BAC22694.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
          Length = 977

 Score =  504 bits (1298), Expect = e-140
 Identities = 259/427 (60%), Positives = 320/427 (74%), Gaps = 4/427 (0%)
 Frame = -2

Query: 1269 NFISMSTPEIPIVSQNAHFSSSSFPQTLKXXXXXXXXXXXXXP---ISDATDHIHPGNAE 1099
            NF  +   E   +SQ++   +SSFP+TLK                 +  +TD     N E
Sbjct: 25   NFYVIHNQEFGKLSQSSSLPTSSFPKTLKLPVIQMPINNNIQSQTTVCVSTDE----NLE 80

Query: 1098 NMSNLQVIPNGYPSNLTNESGGRIFIRDPPWISSLFMKSLLFRSKKSSGVKLEFQEMERR 919
             + NLQ I NG    LT ES  R+FI+DPPW+SSLFM SL  R+K+  GV+ EF+E+ERR
Sbjct: 81   ELVNLQKIANGV---LTKESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERR 137

Query: 918  KYY-MLRRRQVKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIE 742
            + Y MLRRRQ+KAETEAW                +KLAPNLPY KKL+LGWF+P R+AIE
Sbjct: 138  RRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIE 197

Query: 741  KEQNLLRSKKNKAAFAPFIDALPADKLAIIVMHKLMALLMMGGKEDRSVRVVEAAIQIGV 562
            KEQN   + K++AAFAP ID+LPADK+A+IVMHKLM LLMMGGKE+R V+VV+AA+QIG+
Sbjct: 198  KEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGM 257

Query: 561  AIEHEVRIQSFLXXXXXXXXXXXXXXGQEDPSKEVAILRQRVKSLIKRNRVVEVQKLLRS 382
            A+E+EVRI +FL               QED S+E  ILR+RVKSLIKRNRVVEV+KL++S
Sbjct: 258  AVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKS 317

Query: 381  EEFKSWGRDIQAKLGCCLLDLLTQSAYVQPPIDQAADCPPDVRPAFRHIFKIAAREPGQN 202
            EE +SWGRD QAKLGC LL+LLT++AYVQPP+DQ+AD PPD+RPAFRH+F+IA R+PG++
Sbjct: 318  EEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKS 377

Query: 201  LVKKYGVIECDPLVLDGVDKTVKHMVIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTRGS 22
            +VKKYGVIECDPLV+ GVD+TVK M+IPYVPMLVPPK+W+GYDKGGYLFLPSYLMRT GS
Sbjct: 378  IVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGS 437

Query: 21   RRQQDAI 1
            RRQQDA+
Sbjct: 438  RRQQDAV 444


>ref|XP_009608694.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X1
            [Nicotiana tomentosiformis]
          Length = 919

 Score =  498 bits (1281), Expect = e-138
 Identities = 246/370 (66%), Positives = 298/370 (80%), Gaps = 1/370 (0%)
 Frame = -2

Query: 1107 NAENMSNLQVIPNGYPSNLTNESGGRIFIRDPPWISSLFMKSLLFRSKKSSGVKLEFQEM 928
            N E + NLQ IPNG+   L  ES  R+FI+DPPW+SSLFM SL  R+K+  GV+ EF+E+
Sbjct: 19   NLEELVNLQKIPNGF---LNKESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREI 75

Query: 927  ERRKYY-MLRRRQVKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFRE 751
            ERR+ Y MLRRRQ+KAETEAW                +KLAPNLPY KKL+LGWF+P R+
Sbjct: 76   ERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQ 135

Query: 750  AIEKEQNLLRSKKNKAAFAPFIDALPADKLAIIVMHKLMALLMMGGKEDRSVRVVEAAIQ 571
            AIEKEQN   + K++AAFAP ID+LPADK+A+IVMHKLM LLMMGGKE+R V+VV+AA+Q
Sbjct: 136  AIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQ 195

Query: 570  IGVAIEHEVRIQSFLXXXXXXXXXXXXXXGQEDPSKEVAILRQRVKSLIKRNRVVEVQKL 391
            IG+A+E+EVRI +FL               QED S+E  ILR+RVKSLIKRNRVVEV+KL
Sbjct: 196  IGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKL 255

Query: 390  LRSEEFKSWGRDIQAKLGCCLLDLLTQSAYVQPPIDQAADCPPDVRPAFRHIFKIAAREP 211
            ++SEE +SWGRD QAKLGC LL+LLT++AYVQ P+DQ+AD PPD+RPAFRH+FKIA R+P
Sbjct: 256  MKSEEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDP 315

Query: 210  GQNLVKKYGVIECDPLVLDGVDKTVKHMVIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRT 31
            G+N+VKKYGVIECDPLV+ GVD+TVK M+IPYVPMLVPPK+W+GYDKGGYLFLPSYLMRT
Sbjct: 316  GKNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRT 375

Query: 30   RGSRRQQDAI 1
             GSRRQQDA+
Sbjct: 376  HGSRRQQDAV 385


>gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]
          Length = 952

 Score =  478 bits (1231), Expect = e-132
 Identities = 242/421 (57%), Positives = 305/421 (72%), Gaps = 2/421 (0%)
 Frame = -2

Query: 1257 MSTPEIPIVSQNAHFSSSSFPQTLKXXXXXXXXXXXXXPISDATDHIHPGNAENMSNLQV 1078
            M   E   +SQ  H  SSSFP+ +K             P+SD++D     N  N++ + V
Sbjct: 1    MGNSETSGLSQT-HQISSSFPRNVKLPSLHTPAPFLSHPVSDSSDDNFTENPGNLATMLV 59

Query: 1077 IPNG-YPSNLTNESGGRI-FIRDPPWISSLFMKSLLFRSKKSSGVKLEFQEMERRKYYML 904
             PNG   S  + E   R+  I+DPPWISSL++KSLLFR++    VK+EF+EMER KYY L
Sbjct: 60   TPNGGISSEFSKELRDRVVIIQDPPWISSLYIKSLLFRNRNRCDVKIEFKEMERHKYYEL 119

Query: 903  RRRQVKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEKEQNLL 724
            RRRQ+KAETEAW                +K+APNLPYFKKLMLGWF+P  EAI  EQ+L 
Sbjct: 120  RRRQIKAETEAWENMVKEYKELEKEMCEKKMAPNLPYFKKLMLGWFEPLTEAIRTEQSLQ 179

Query: 723  RSKKNKAAFAPFIDALPADKLAIIVMHKLMALLMMGGKEDRSVRVVEAAIQIGVAIEHEV 544
            + KKN+ AFAP+ID+LP + +A+IVMHK+M LLMMGGK+DR +RVVEAA+QIG AIE EV
Sbjct: 180  KPKKNRIAFAPYIDSLPPESMAVIVMHKIMGLLMMGGKQDRCIRVVEAALQIGKAIEQEV 239

Query: 543  RIQSFLXXXXXXXXXXXXXXGQEDPSKEVAILRQRVKSLIKRNRVVEVQKLLRSEEFKSW 364
            RI +FL               QE+  ++ A LR+RVK+L++R R VEVQKL++SE  + W
Sbjct: 240  RIHAFLEKTKHQKEAVASES-QENSCEKAANLRKRVKNLVRRGRGVEVQKLVKSENHEPW 298

Query: 363  GRDIQAKLGCCLLDLLTQSAYVQPPIDQAADCPPDVRPAFRHIFKIAAREPGQNLVKKYG 184
             R+IQAKLGCCL++LLTQSAYVQPP+ Q+AD PPDVRPAFRH FKIA REP Q +V++YG
Sbjct: 299  TREIQAKLGCCLINLLTQSAYVQPPVSQSADSPPDVRPAFRHFFKIATREPRQTVVRRYG 358

Query: 183  VIECDPLVLDGVDKTVKHMVIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTRGSRRQQDA 4
            VIECDPL+LDG +  VKHM++P++PML+PPK+WKGYDKGGYLFLPSY+MRT GSRRQQDA
Sbjct: 359  VIECDPLILDGFESNVKHMMVPHIPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRRQQDA 418

Query: 3    I 1
            +
Sbjct: 419  V 419


>ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
            gi|462398756|gb|EMJ04424.1| hypothetical protein
            PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score =  434 bits (1116), Expect = e-119
 Identities = 239/453 (52%), Positives = 294/453 (64%), Gaps = 2/453 (0%)
 Frame = -2

Query: 1353 LASTIPFVSSSRAPFYQXXXXXXXXXXPN--FISMSTPEIPIVSQNAHFSSSSFPQTLKX 1180
            +AST  F  S +A  Y            N  F+  ST    +  + +H SS+ FP  LK 
Sbjct: 1    MASTASFSPSPQAQTYTCSSRWSKAPKLNHKFLFSSTSN-SLFFKPSHSSSTHFPLNLKP 59

Query: 1179 XXXXXXXXXXXXPISDATDHIHPGNAENMSNLQVIPNGYPSNLTNESGGRIFIRDPPWIS 1000
                         I    D I     EN  N Q+  + +      ES  RIFI+DPPWI+
Sbjct: 60   PPEPVH-------IPPLRDSIQDNIVENSMNFQIPMSEFHLITPQESAPRIFIQDPPWIA 112

Query: 999  SLFMKSLLFRSKKSSGVKLEFQEMERRKYYMLRRRQVKAETEAWXXXXXXXXXXXXXXXX 820
            SLF+K +  R+ +   +KLE +E+ERR Y +LRRRQ+KAETEAW                
Sbjct: 113  SLFLKGIYKRANQE--LKLESKEIERRNYNVLRRRQIKAETEAWERMVDEYKDLEKVMRE 170

Query: 819  RKLAPNLPYFKKLMLGWFQPFREAIEKEQNLLRSKKNKAAFAPFIDALPADKLAIIVMHK 640
            +KLAPNLPY K L LGWF+P REAI +EQ   ++KK+KAAFAP ID LPADK+A+IVMHK
Sbjct: 171  KKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPADKMALIVMHK 230

Query: 639  LMALLMMGGKEDRSVRVVEAAIQIGVAIEHEVRIQSFLXXXXXXXXXXXXXXGQEDPSKE 460
            +M L+M+G  +D  V+VV+AA+ IG+AIE EVRI SFL               ++  SKE
Sbjct: 231  MMGLVMVGN-QDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKTGVADEDGLSKE 289

Query: 459  VAILRQRVKSLIKRNRVVEVQKLLRSEEFKSWGRDIQAKLGCCLLDLLTQSAYVQPPIDQ 280
              ILR+RV  LI+R R+ EVQKLL  EE K WGRD QAKLG  L++LLT++AYVQPP+ Q
Sbjct: 290  KEILRKRVNGLIRRKRLNEVQKLLIKEEMKPWGRDKQAKLGSRLIELLTETAYVQPPLSQ 349

Query: 279  AADCPPDVRPAFRHIFKIAAREPGQNLVKKYGVIECDPLVLDGVDKTVKHMVIPYVPMLV 100
             AD PPDVRPAFRH FK  A+ PGQ +VK YGVIECDPLVL G+DKT KHM+IPYVPMLV
Sbjct: 350  LADSPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHMLIPYVPMLV 409

Query: 99   PPKRWKGYDKGGYLFLPSYLMRTRGSRRQQDAI 1
            PPKRWKGYDKGG+LFLPSY+MRT GSR+Q DA+
Sbjct: 410  PPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAM 442


>ref|XP_008243031.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Prunus mume]
          Length = 976

 Score =  434 bits (1115), Expect = e-118
 Identities = 238/453 (52%), Positives = 295/453 (65%), Gaps = 2/453 (0%)
 Frame = -2

Query: 1353 LASTIPFVSSSRAPFYQXXXXXXXXXXPN--FISMSTPEIPIVSQNAHFSSSSFPQTLKX 1180
            +AST  F  S +   Y            N  F+  ST    +  + +H SS+ FP +LK 
Sbjct: 1    MASTASFSPSPQGQGYTCSSRWSKPPKLNHKFLFSSTSN-SLFFKPSHSSSTHFPLSLKP 59

Query: 1179 XXXXXXXXXXXXPISDATDHIHPGNAENMSNLQVIPNGYPSNLTNESGGRIFIRDPPWIS 1000
                         I    D I     EN  N Q+  + +      ESG RIFI+DPPWI+
Sbjct: 60   PPEPVH-------IPPLRDSIQDNIVENSMNFQIPMSEFHLITPQESGPRIFIQDPPWIA 112

Query: 999  SLFMKSLLFRSKKSSGVKLEFQEMERRKYYMLRRRQVKAETEAWXXXXXXXXXXXXXXXX 820
            SLF+K +  R+ +   +KLE +E+ERR Y +LRRRQ+KAETEAW                
Sbjct: 113  SLFLKGIYKRANQE--LKLESKEIERRNYNLLRRRQIKAETEAWERMVDEYKDLEKVMRE 170

Query: 819  RKLAPNLPYFKKLMLGWFQPFREAIEKEQNLLRSKKNKAAFAPFIDALPADKLAIIVMHK 640
            +KLAPNLPY K L LGWF+P REAI +EQ   ++KK+KAAFAP ID LPADK+A+IVMHK
Sbjct: 171  KKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPADKMALIVMHK 230

Query: 639  LMALLMMGGKEDRSVRVVEAAIQIGVAIEHEVRIQSFLXXXXXXXXXXXXXXGQEDPSKE 460
            +M L+M+G  +D  V+VV+AA+ IG+AIE EVRI SFL               ++  SKE
Sbjct: 231  MMGLVMVGN-QDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKTGVADEDGLSKE 289

Query: 459  VAILRQRVKSLIKRNRVVEVQKLLRSEEFKSWGRDIQAKLGCCLLDLLTQSAYVQPPIDQ 280
              ILR+RV  LI+R R+ EVQKLL  EE K WGRD QAKLG  L++LLT++AYVQPP+ Q
Sbjct: 290  KEILRKRVNGLIRRKRLNEVQKLLIKEEMKPWGRDKQAKLGSRLIELLTETAYVQPPLSQ 349

Query: 279  AADCPPDVRPAFRHIFKIAAREPGQNLVKKYGVIECDPLVLDGVDKTVKHMVIPYVPMLV 100
             A+ PPDVRPAFRH FK  A+ PGQ +VK YGVIECDPLVL G+DKT KHM+IPYVPMLV
Sbjct: 350  LAESPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHMLIPYVPMLV 409

Query: 99   PPKRWKGYDKGGYLFLPSYLMRTRGSRRQQDAI 1
            PPKRWKGYDKGG+LFLPSY+MRT GSR+Q DA+
Sbjct: 410  PPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAM 442


>ref|XP_009366215.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Pyrus x
            bretschneideri]
          Length = 972

 Score =  423 bits (1088), Expect = e-115
 Identities = 217/375 (57%), Positives = 270/375 (72%)
 Frame = -2

Query: 1125 DHIHPGNAENMSNLQVIPNGYPSNLTNESGGRIFIRDPPWISSLFMKSLLFRSKKSSGVK 946
            D +     EN  NLQ+    +     +ES  RIFI+DPPWI++LF+K +    K +  +K
Sbjct: 67   DSVQDNLVENSMNLQLPIREFHLITPDESAPRIFIQDPPWIAALFLKGMY--KKANQELK 124

Query: 945  LEFQEMERRKYYMLRRRQVKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPYFKKLMLGWF 766
            LE +E++RRKY +LRRRQ+KAETEAW                +KLAP+LPY K L LGWF
Sbjct: 125  LESKEIDRRKYNLLRRRQIKAETEAWERMVEEYKDLERVMREKKLAPSLPYVKTLFLGWF 184

Query: 765  QPFREAIEKEQNLLRSKKNKAAFAPFIDALPADKLAIIVMHKLMALLMMGGKEDRSVRVV 586
            +P REAI +EQ + ++KK+KAAFAP ID LP DK+A+IVMHK+M L+M+G  +D  V+VV
Sbjct: 185  EPLREAIAREQQVQQTKKHKAAFAPHIDLLPPDKMALIVMHKMMGLVMVGN-QDGCVQVV 243

Query: 585  EAAIQIGVAIEHEVRIQSFLXXXXXXXXXXXXXXGQEDPSKEVAILRQRVKSLIKRNRVV 406
            +AA+ IG+AIE EVRI SFL               ++   KE  ILR+RV  LIKR R+ 
Sbjct: 244  QAAVHIGMAIEQEVRIHSFLEKTKNFQRKKTAVADEDSLIKEKEILRKRVNVLIKRKRLR 303

Query: 405  EVQKLLRSEEFKSWGRDIQAKLGCCLLDLLTQSAYVQPPIDQAADCPPDVRPAFRHIFKI 226
            EVQKLL  EEFK WGRD QAKLG  L++LLT++AYVQPP++Q AD PPDVRPAFRH FK 
Sbjct: 304  EVQKLLVKEEFKPWGRDTQAKLGSRLIELLTETAYVQPPLNQLADGPPDVRPAFRHRFKA 363

Query: 225  AAREPGQNLVKKYGVIECDPLVLDGVDKTVKHMVIPYVPMLVPPKRWKGYDKGGYLFLPS 46
            AA+ PGQ LVK YGVIECDPLVL G+DKT KHM+IPYVPMLVPP++WKGYDKGG+LFLPS
Sbjct: 364  AAKTPGQKLVKNYGVIECDPLVLTGLDKTAKHMLIPYVPMLVPPRKWKGYDKGGHLFLPS 423

Query: 45   YLMRTRGSRRQQDAI 1
            Y+MRT GSR+Q D +
Sbjct: 424  YVMRTHGSRKQVDTM 438


>ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
            [Ricinus communis] gi|223532193|gb|EEF33998.1|
            DNA-directed RNA polymerase 3B, chloroplast precursor,
            putative [Ricinus communis]
          Length = 1000

 Score =  422 bits (1085), Expect = e-115
 Identities = 213/367 (58%), Positives = 267/367 (72%)
 Frame = -2

Query: 1101 ENMSNLQVIPNGYPSNLTNESGGRIFIRDPPWISSLFMKSLLFRSKKSSGVKLEFQEMER 922
            E +  L +  N     L  ES  R+FI+DPPWIS+LF K L     K   VKLEF+++E+
Sbjct: 90   ETLIKLDLPTNHNHQVLPEESSRRVFIQDPPWISALFFKGLYKIPNKE--VKLEFKDIEK 147

Query: 921  RKYYMLRRRQVKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIE 742
            RKY +LRRRQ++ ETEAW                RKLAPNLPY K L LGWF+P +E I+
Sbjct: 148  RKYNLLRRRQIREETEAWERMVEEYKALVKEMCERKLAPNLPYVKGLFLGWFEPLKEGIK 207

Query: 741  KEQNLLRSKKNKAAFAPFIDALPADKLAIIVMHKLMALLMMGGKEDRSVRVVEAAIQIGV 562
             EQNL RSKKNKAAFAP I+ LPADK+A+IVMHK++ LLM+G  ED  V +V+AA+QIG+
Sbjct: 208  SEQNLQRSKKNKAAFAPHIELLPADKMAVIVMHKMVGLLMVG-HEDGCVPLVQAAVQIGM 266

Query: 561  AIEHEVRIQSFLXXXXXXXXXXXXXXGQEDPSKEVAILRQRVKSLIKRNRVVEVQKLLRS 382
            AIE EVRI +FL               QE   KE  ILR+RV SLI+R +++EVQKL+++
Sbjct: 267  AIEQEVRIHNFLEKTKNYQRKKTISGAQESLGKEKEILRKRVNSLIRRKKLIEVQKLVKN 326

Query: 381  EEFKSWGRDIQAKLGCCLLDLLTQSAYVQPPIDQAADCPPDVRPAFRHIFKIAAREPGQN 202
            EE K WGRD QAKLG  L++LLT++A+VQPP++Q+AD PPDVRPAFRH F+I    PGQ 
Sbjct: 327  EEMKPWGRDTQAKLGSRLIELLTETAFVQPPVNQSADVPPDVRPAFRHRFRIVKNNPGQK 386

Query: 201  LVKKYGVIECDPLVLDGVDKTVKHMVIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTRGS 22
            +VKKYGVIEC+PLVL G+D + KHM+IPY PMLVPPK+WKGY+KGG+ FLPSY+MRT GS
Sbjct: 387  IVKKYGVIECNPLVLKGLDGSAKHMLIPYFPMLVPPKKWKGYNKGGHFFLPSYIMRTHGS 446

Query: 21   RRQQDAI 1
            R+QQDA+
Sbjct: 447  RKQQDAL 453


>ref|XP_008452554.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Cucumis
            melo]
          Length = 975

 Score =  422 bits (1084), Expect = e-115
 Identities = 228/423 (53%), Positives = 285/423 (67%)
 Frame = -2

Query: 1269 NFISMSTPEIPIVSQNAHFSSSSFPQTLKXXXXXXXXXXXXXPISDATDHIHPGNAENMS 1090
            +F S     +  VS   +F S+S P  L+              ++D+         +N  
Sbjct: 37   SFTSTFNSSLSSVSFPINFDSTSQPFHLQP-------------LADSVHENFTETLDNSM 83

Query: 1089 NLQVIPNGYPSNLTNESGGRIFIRDPPWISSLFMKSLLFRSKKSSGVKLEFQEMERRKYY 910
            NLQ+  +        ESG RIFI+DPPWI+SLF+K L    +K   VKLEF ++E+RKY 
Sbjct: 84   NLQIPTSEIHQITREESGQRIFIQDPPWIASLFLKGLYKCVQKE--VKLEFMKIEKRKYN 141

Query: 909  MLRRRQVKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEKEQN 730
            +LRRRQ+KAETEAW                +KLAPNLPY K L LGWF+P ++AIEKEQ 
Sbjct: 142  LLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPYVKTLFLGWFEPLKQAIEKEQK 201

Query: 729  LLRSKKNKAAFAPFIDALPADKLAIIVMHKLMALLMMGGKEDRSVRVVEAAIQIGVAIEH 550
              RSKK KAAFAP I+ L ADKLA+IVM+K+M LLM+  ++D  V+VV+AA+QIG AIE 
Sbjct: 202  TQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVA-QQDCCVQVVQAAVQIGGAIEQ 260

Query: 549  EVRIQSFLXXXXXXXXXXXXXXGQEDPSKEVAILRQRVKSLIKRNRVVEVQKLLRSEEFK 370
            EVRIQSFL                E  SKE  +LR+RV   I+R R+ EVQKLL+ EEFK
Sbjct: 261  EVRIQSFLEKARSNQRTKVPADT-ECLSKEKEVLRKRVNGFIRRRRLKEVQKLLKKEEFK 319

Query: 369  SWGRDIQAKLGCCLLDLLTQSAYVQPPIDQAADCPPDVRPAFRHIFKIAAREPGQNLVKK 190
            +WGRD QAKLG  L++LL +SA++QPP+ Q+AD PPDVRPAF H FK  A+ PGQN VKK
Sbjct: 320  AWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPAFWHGFKPVAKTPGQNFVKK 379

Query: 189  YGVIECDPLVLDGVDKTVKHMVIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTRGSRRQQ 10
            YGVIECDP+VL G+D+T KHM+IPY+PMLVPPK+WKGYDKGG+ FLPSY+MRT GS RQQ
Sbjct: 380  YGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQ 439

Query: 9    DAI 1
            DA+
Sbjct: 440  DAM 442


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score =  421 bits (1082), Expect = e-115
 Identities = 216/368 (58%), Positives = 267/368 (72%), Gaps = 1/368 (0%)
 Frame = -2

Query: 1101 ENMSNLQVIPNGYPSNLTNESGGRIFIRDPPWISSLFMKSLLFRSKKSS-GVKLEFQEME 925
            ++ SN+QV           ES  RIF++DPPWISS        R++++   VKLEF+E E
Sbjct: 90   QDSSNIQV----------KESIPRIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETE 139

Query: 924  RRKYYMLRRRQVKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAI 745
            RR Y +LRRRQVKAETEAW                +KLAPNLPY K L LGWF+P REAI
Sbjct: 140  RRNYGLLRRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAI 199

Query: 744  EKEQNLLRSKKNKAAFAPFIDALPADKLAIIVMHKLMALLMMGGKEDRSVRVVEAAIQIG 565
            +KEQ   R+KK KAA+AP I+ LPADK+A+IVMHK+M L+MMG  E+  VRVV+AA+QIG
Sbjct: 200  DKEQRAQRTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMMG-HEEGCVRVVQAAVQIG 258

Query: 564  VAIEHEVRIQSFLXXXXXXXXXXXXXXGQEDPSKEVAILRQRVKSLIKRNRVVEVQKLLR 385
            +AIE EVRI SFL               QE   +E  ILR+RVKS I++ +++EVQKL++
Sbjct: 259  MAIEQEVRIHSFLEKTKNFERHKTVGHSQEG-LREKEILRKRVKSFIRKKKIIEVQKLVK 317

Query: 384  SEEFKSWGRDIQAKLGCCLLDLLTQSAYVQPPIDQAADCPPDVRPAFRHIFKIAAREPGQ 205
            +EE   WGRD QAKLG  L++LLT++AYVQ P++Q+ADCPPDVRPAFRH FK   +E GQ
Sbjct: 318  NEEITPWGRDTQAKLGSRLIELLTETAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQ 377

Query: 204  NLVKKYGVIECDPLVLDGVDKTVKHMVIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTRG 25
               +KYGVIECDPLVL G+D+T KHMVIPYVPML+PPK+WKGYDKGGYLFLPSY+MRT G
Sbjct: 378  KDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHG 437

Query: 24   SRRQQDAI 1
            SR+QQDA+
Sbjct: 438  SRKQQDAV 445


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Fragaria
            vesca subsp. vesca]
          Length = 973

 Score =  420 bits (1079), Expect = e-114
 Identities = 212/344 (61%), Positives = 258/344 (75%)
 Frame = -2

Query: 1032 RIFIRDPPWISSLFMKSLLFRSKKSSGVKLEFQEMERRKYYMLRRRQVKAETEAWXXXXX 853
            RIFI+DPPWI+SLF+K +  +  K   +K+E +E++RRKY +LRRRQ+KAETEAW     
Sbjct: 99   RIFIQDPPWIASLFLKGMFKKVNKE--LKVESKEIDRRKYNLLRRRQIKAETEAWEKMVE 156

Query: 852  XXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFREAIEKEQNLLRSKKNKAAFAPFIDALP 673
                       +KLAP+LPY K L LGWF+P REAI KEQ   ++KK+K AFAP ID LP
Sbjct: 157  DYKDLERVMREKKLAPSLPYVKALFLGWFEPLREAIAKEQKAQQTKKHKQAFAPHIDLLP 216

Query: 672  ADKLAIIVMHKLMALLMMGGKEDRSVRVVEAAIQIGVAIEHEVRIQSFLXXXXXXXXXXX 493
            ADK+A+IVMHKLM L+MMG  +D  V+VV+AA+ IG+AIE EVRI SFL           
Sbjct: 217  ADKMALIVMHKLMGLVMMGN-QDGCVQVVQAAVHIGMAIEQEVRIHSFLEKSKSLQRKKT 275

Query: 492  XXXGQEDPSKEVAILRQRVKSLIKRNRVVEVQKLLRSEEFKSWGRDIQAKLGCCLLDLLT 313
                ++  SKE  ILR+RV  LI+R R+VEVQKLL+ E+ K WGRD QAKLG  L++LLT
Sbjct: 276  SVADEDGLSKEKEILRKRVNGLIRRKRLVEVQKLLKKEDMKPWGRDTQAKLGSRLIELLT 335

Query: 312  QSAYVQPPIDQAADCPPDVRPAFRHIFKIAAREPGQNLVKKYGVIECDPLVLDGVDKTVK 133
            ++A+VQPP+DQ AD PPDVRPAFRH  K AA+ PGQ LVK YGVIECDPLVL G+DKT K
Sbjct: 336  ETAHVQPPLDQLADGPPDVRPAFRHRLKAAAKSPGQKLVKNYGVIECDPLVLAGLDKTAK 395

Query: 132  HMVIPYVPMLVPPKRWKGYDKGGYLFLPSYLMRTRGSRRQQDAI 1
            HM+IPYVPMLVPPKRWKGYDKGG+LFLPSY+MRT GSR+Q D +
Sbjct: 396  HMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDTM 439


>gb|KHG29144.1| DNA-directed RNA polymerase 3, chloroplastic -like protein [Gossypium
            arboreum]
          Length = 1024

 Score =  419 bits (1078), Expect = e-114
 Identities = 221/372 (59%), Positives = 272/372 (73%), Gaps = 3/372 (0%)
 Frame = -2

Query: 1107 NAENMSNLQVIPNGYPSN-LTNESGGRIFIRDPPWISSLFMKSLLFRSKKSSGVKLEFQE 931
            N EN  N  ++PN +    L+ E+  RIFI+DPPWIS+LF K L   + ++  VK+E +E
Sbjct: 72   NIENPKNF-LLPNAHSRQILSPETAPRIFIQDPPWISALFWKGLYKMTNQT--VKIEHKE 128

Query: 930  MERRKYYMLRRRQVKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFRE 751
            +E+RKY +LRRRQVK ETEAW                +KLAPNLPY K L LGWF+P RE
Sbjct: 129  IEKRKYNLLRRRQVKEETEAWEKMVEEYRELEREMCEKKLAPNLPYVKGLFLGWFEPLRE 188

Query: 750  AIEKEQNLLR--SKKNKAAFAPFIDALPADKLAIIVMHKLMALLMMGGKEDRSVRVVEAA 577
            AI KEQ + +  SKK +AA+AP I+ LPADKLA+IVMHK+M L+M G +ED  V+VV+AA
Sbjct: 189  AIAKEQKVQKGKSKKLRAAYAPHIELLPADKLAVIVMHKMMGLVM-GAEEDGYVQVVQAA 247

Query: 576  IQIGVAIEHEVRIQSFLXXXXXXXXXXXXXXGQEDPSKEVAILRQRVKSLIKRNRVVEVQ 397
            + IGVAIE EVRI SFL               Q   SKE  ILR+RV SLI+R R+ EVQ
Sbjct: 248  VHIGVAIEQEVRIHSFLEKTKNYQRKQIVDEVQ-GVSKEKEILRKRVNSLIRRRRLTEVQ 306

Query: 396  KLLRSEEFKSWGRDIQAKLGCCLLDLLTQSAYVQPPIDQAADCPPDVRPAFRHIFKIAAR 217
            KL+++EE K WGRD QAKLG  LL+LLT++AYVQPPIDQ+ D PPDVRPAFRH FK  +R
Sbjct: 307  KLVKNEEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVRPAFRHKFKTISR 366

Query: 216  EPGQNLVKKYGVIECDPLVLDGVDKTVKHMVIPYVPMLVPPKRWKGYDKGGYLFLPSYLM 37
             PGQ + K+YGVIECDPL+  G+DK+ KHM+IPYVPMLVPPK+WKGYDKGGYLFLPSY+M
Sbjct: 367  GPGQKIKKRYGVIECDPLIRSGLDKSAKHMMIPYVPMLVPPKKWKGYDKGGYLFLPSYVM 426

Query: 36   RTRGSRRQQDAI 1
            RT GSR+QQ+A+
Sbjct: 427  RTHGSRKQQEAL 438


>gb|KJB53874.1| hypothetical protein B456_009G009300 [Gossypium raimondii]
          Length = 972

 Score =  415 bits (1067), Expect = e-113
 Identities = 220/372 (59%), Positives = 269/372 (72%), Gaps = 3/372 (0%)
 Frame = -2

Query: 1107 NAENMSNLQVIPNGYPSN-LTNESGGRIFIRDPPWISSLFMKSLLFRSKKSSGVKLEFQE 931
            N EN   L ++PN +    L+ ES  RIFI+DPPWIS+LF K L   + ++  VK+E +E
Sbjct: 72   NIENPKKL-LLPNAHSRQILSPESAPRIFIQDPPWISALFWKGLYKMTNQT--VKIEHKE 128

Query: 930  MERRKYYMLRRRQVKAETEAWXXXXXXXXXXXXXXXXRKLAPNLPYFKKLMLGWFQPFRE 751
            +E+RKY +LRRRQVK ETEAW                +KLAPNLPY K L LGWF+P RE
Sbjct: 129  IEKRKYNLLRRRQVKEETEAWEKMVEEYRELEREMCEKKLAPNLPYVKGLFLGWFEPLRE 188

Query: 750  AIEKEQNLLRSKKNK--AAFAPFIDALPADKLAIIVMHKLMALLMMGGKEDRSVRVVEAA 577
            AI KEQ + + K  K  AA+AP I+ LPADKLA+IVMHK+M L+M G +ED  V+VV+AA
Sbjct: 189  AIAKEQKVQKGKNKKLRAAYAPHIELLPADKLAVIVMHKMMGLVM-GAEEDGYVQVVQAA 247

Query: 576  IQIGVAIEHEVRIQSFLXXXXXXXXXXXXXXGQEDPSKEVAILRQRVKSLIKRNRVVEVQ 397
            + IGVAIE EVRI SFL               Q   SKE  ILR+RV SLI+R R+ EVQ
Sbjct: 248  VHIGVAIEQEVRIHSFLEKTKNYQRKQIVDEVQ-GASKEKEILRKRVNSLIRRRRLTEVQ 306

Query: 396  KLLRSEEFKSWGRDIQAKLGCCLLDLLTQSAYVQPPIDQAADCPPDVRPAFRHIFKIAAR 217
            KL+++EE K WGRD QAKLG  LL+LLT++AYVQPPIDQ+ D P DVRPAFRH FK  +R
Sbjct: 307  KLVKNEEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPLDVRPAFRHKFKTISR 366

Query: 216  EPGQNLVKKYGVIECDPLVLDGVDKTVKHMVIPYVPMLVPPKRWKGYDKGGYLFLPSYLM 37
             PGQ + K+YGVIECDPL+  G+DK+ KHM+IPYVPMLVPPK+WKGYDKGGYLFLPSY+M
Sbjct: 367  GPGQKIKKRYGVIECDPLIRSGLDKSAKHMMIPYVPMLVPPKKWKGYDKGGYLFLPSYVM 426

Query: 36   RTRGSRRQQDAI 1
            RT GSR+QQ+A+
Sbjct: 427  RTHGSRKQQEAL 438