BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Perilla23_contig00024596
         (1302 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011075204.1| PREDICTED: DNA-directed RNA polymerase I sub...   631   e-178
ref|XP_012834350.1| PREDICTED: DNA-directed RNA polymerase I sub...   486   e-134
emb|CDP10074.1| unnamed protein product [Coffea canephora]            459   e-126
ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I sub...   435   e-119
ref|XP_010036456.1| PREDICTED: DNA-directed RNA polymerase I sub...   420   e-114
ref|XP_010036455.1| PREDICTED: DNA-directed RNA polymerase I sub...   420   e-114
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              418   e-114
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...   417   e-114
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...   415   e-113
ref|XP_009790932.1| PREDICTED: DNA-directed RNA polymerase I sub...   406   e-110
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   394   e-107
ref|XP_012470632.1| PREDICTED: DNA-directed RNA polymerase I sub...   390   e-105
gb|KHG00372.1| DNA-directed RNA polymerase I subunit rpa[2] [Gos...   388   e-105
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...   383   e-103
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...   383   e-103
ref|XP_011652120.1| PREDICTED: DNA-directed RNA polymerase I sub...   378   e-102
ref|XP_008443105.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   378   e-102
ref|XP_010666878.1| PREDICTED: DNA-directed RNA polymerase I sub...   374   e-101
ref|XP_012073009.1| PREDICTED: DNA-directed RNA polymerase I sub...   372   e-100
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...   372   e-100

>ref|XP_011075204.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Sesamum
            indicum]
          Length = 1701

 Score =  631 bits (1627), Expect = e-178
 Identities = 313/442 (70%), Positives = 359/442 (81%), Gaps = 9/442 (2%)
 Frame = -1

Query: 1299 SLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPAY 1120
            S+VKITNPN++DIL+KPIPGGLYDPAMGPLDE+S CKSCG R+YHC GHCGHI+LVSPAY
Sbjct: 24   SVVKITNPNLLDILEKPIPGGLYDPAMGPLDENSPCKSCGQRAYHCPGHCGHIELVSPAY 83

Query: 1119 NPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAK--NMRQKMLDKK 946
            NPLL NTLN+LLNKTCF CF+FR+S  EV NCVSQLE I +GDIVGAK  +MRQ + DKK
Sbjct: 84   NPLLFNTLNNLLNKTCFYCFQFRTSRREVENCVSQLELIVKGDIVGAKRLSMRQNLQDKK 143

Query: 945  KMDWIVPDDIVDPEDCQGSQSSHS-GVFSDGEKLDEHKEGFWDSSQLTESKSVLIXXXXX 769
             MDW++ DDIVDPED QGS +SHS G+  D    +++ +  WDSSQLTE+ SVL      
Sbjct: 144  NMDWVLSDDIVDPEDSQGSHTSHSSGISGDQNHYEQNSQACWDSSQLTEAMSVLNEFLKK 203

Query: 768  XXXXXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSRLNVTHSGGGDDRPSSEVL 589
                    + NNPK+ KPTFGWFH+SGLS  Q+RSNAI  SRL+V HSGGG++RPSSEV+
Sbjct: 204  KGRKCKNCECNNPKLNKPTFGWFHVSGLSDTQLRSNAIRRSRLDVAHSGGGEERPSSEVV 263

Query: 588  NASDYSLNDGSETAEAH------DXXXXXXXXXXKQKRNQGLLDTTNYTSGPLLPSEVRD 427
            NASDYS  D SETAEA+      D           Q RNQGL +T NY SGPLLPSEVRD
Sbjct: 264  NASDYSWKDDSETAEANSFIAASDTPKKSSKKGVNQARNQGLEETNNYFSGPLLPSEVRD 323

Query: 426  ILRRLWENEAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGDSVME 247
            ILRRLWENEAPLCSY+CDIQ +Q K+ GN++GY+MFFLE+ILVPPIKFRPPAKGGDSVME
Sbjct: 324  ILRRLWENEAPLCSYMCDIQQQQCKLSGNVAGYSMFFLESILVPPIKFRPPAKGGDSVME 383

Query: 246  HPHTLLLGKVLQANIALGNAHMNNAERSRIISRWMDLQQSINVLFDSKTANSQSLKDGPS 67
            HP T+LLGKVLQ+NIALGNAH+NNAERS+II+RWMDLQ SINVLFDSKTANSQ+ KDG S
Sbjct: 384  HPQTVLLGKVLQSNIALGNAHVNNAERSKIINRWMDLQLSINVLFDSKTANSQAQKDGTS 443

Query: 66   GICQLLEKKEGLFRQNMMGKRV 1
            GICQ LEKKEG+FRQ MMGKRV
Sbjct: 444  GICQFLEKKEGIFRQKMMGKRV 465


>ref|XP_012834350.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Erythranthe
            guttatus] gi|604336035|gb|EYU39881.1| hypothetical
            protein MIMGU_mgv1a000122mg [Erythranthe guttata]
          Length = 1719

 Score =  486 bits (1252), Expect = e-134
 Identities = 261/446 (58%), Positives = 312/446 (69%), Gaps = 13/446 (2%)
 Frame = -1

Query: 1299 SLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPAY 1120
            SLVKITNPN+VDIL KP PGGLYDPAMG LDE S C+SCG R+Y CNGHCGHI+LVS AY
Sbjct: 28   SLVKITNPNLVDILGKPCPGGLYDPAMGSLDERSICESCGQRAYLCNGHCGHIELVSVAY 87

Query: 1119 NPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMR--QKMLDKK 946
            NPLL NTL+++LNKTC  C +F SS  E  N VSQLE I +GD+ GAK +        KK
Sbjct: 88   NPLLFNTLSNILNKTCLYCLQFISSAEETENFVSQLELIRKGDLAGAKKLALGSSFKGKK 147

Query: 945  KMDWIVPDDIVDP-EDCQGSQSSHSGVFSDGEK-LDEHKEGFWDSSQLTESKSVLIXXXX 772
            KM ++  DD  D  ED QGS  SHS V SDGE    + ++  W S+QL E+ SV+     
Sbjct: 148  KMVFVSTDDDTDEREDSQGSHMSHSAVLSDGENHFKDDEQASWSSAQLAEAISVMNEYLR 207

Query: 771  XXXXXXXXXKHNNPKITKPTFGWFHLSG-LSSNQIRSNAIMSSRLNVTHSGGGDDRPSSE 595
                     +   PKI+KPTFGWF + G  S+  IR N I S +L+ + S GG+D  SSE
Sbjct: 208  RKGKKCMNCEMRCPKISKPTFGWFQVGGATSAKAIRENVIRSHKLDESDSDGGEDNFSSE 267

Query: 594  VLNASDYSLNDGSETAEAHDXXXXXXXXXXKQKR--------NQGLLDTTNYTSGPLLPS 439
            V+NA D+S+ND SET E++            +K+        N G  D   Y SGPLLPS
Sbjct: 268  VVNAGDHSMNDDSETVESNSFIATSNSTKKSKKKGVNRAKKLNPGSGDPNFYLSGPLLPS 327

Query: 438  EVRDILRRLWENEAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGD 259
            +VRDIL+ LWE EA  CSYI DIQ ++ K  GN +GY+MFFLET+LVPPI+FRPPAKGGD
Sbjct: 328  QVRDILKLLWEKEASFCSYISDIQRQKCKPFGNKTGYSMFFLETVLVPPIRFRPPAKGGD 387

Query: 258  SVMEHPHTLLLGKVLQANIALGNAHMNNAERSRIISRWMDLQQSINVLFDSKTANSQSLK 79
            SVMEHP T+LLGKVLQ+NIALGNAH+ NAE+S+IISRWM+LQQSINV FDSKTA S + K
Sbjct: 388  SVMEHPQTVLLGKVLQSNIALGNAHV-NAEKSKIISRWMELQQSINVYFDSKTATSLAQK 446

Query: 78   DGPSGICQLLEKKEGLFRQNMMGKRV 1
            D  +GICQ LEKKEG+FRQ MMGKRV
Sbjct: 447  DSIAGICQFLEKKEGIFRQKMMGKRV 472


>emb|CDP10074.1| unnamed protein product [Coffea canephora]
          Length = 1680

 Score =  459 bits (1180), Expect = e-126
 Identities = 241/442 (54%), Positives = 299/442 (67%), Gaps = 9/442 (2%)
 Frame = -1

Query: 1299 SLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPAY 1120
            S+VKI NP ++D + +P+PGGLYDPAMGP DE S CKSCG RS+HC GHCGHI+LVSPAY
Sbjct: 30   SVVKIKNPVLLDTVGRPMPGGLYDPAMGPFDEQSPCKSCGQRSFHCTGHCGHIELVSPAY 89

Query: 1119 NPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKKM 940
            NPLL N L +LL +TCF CF FRSST EV  CV QLERI +GD++GAK          ++
Sbjct: 90   NPLLFNMLYNLLQRTCFYCFHFRSSTEEVDKCVLQLERIAKGDVIGAK----------RL 139

Query: 939  DWIVPDDIVDPEDCQGSQSSHSGVFSDGEKLDEH-KEGFWDSSQLTESKSVLIXXXXXXX 763
            D     D+ + ED +GS  S   V+   E   EH K+  WDS Q TE+ SVL        
Sbjct: 140  DAASSADLDNSEDSEGSHVSCGNVYHGAE---EHMKQPSWDSFQFTEAMSVLNMFLKPKL 196

Query: 762  XXXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSRLNVTHSGGGDDRPSSEVLNA 583
                  +  NPKI KPTFGWFH+  +S+ + R+N I   RL+   SGG ++R SSEV+NA
Sbjct: 197  SKCGKCEAKNPKIKKPTFGWFHMV-VSNAETRANIIRGHRLDGFRSGGSEERSSSEVVNA 255

Query: 582  SDYSLNDGSETAEAHDXXXXXXXXXXKQKRN--------QGLLDTTNYTSGPLLPSEVRD 427
            +D    D S+T +               K++        + L       S  LLPSEVRD
Sbjct: 256  NDSLWEDDSQTGKTASYTVSDGIDTPVAKKSPNQPGRVGEELKKQKEAFSEHLLPSEVRD 315

Query: 426  ILRRLWENEAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGDSVME 247
            +++RLWENEAPLCS+ICD+Q  Q+     I+GY+MFFL++ILVPPIKFRP A+ GD+VME
Sbjct: 316  VVKRLWENEAPLCSFICDLQREQHNSAAGIAGYSMFFLDSILVPPIKFRPLARTGDAVME 375

Query: 246  HPHTLLLGKVLQANIALGNAHMNNAERSRIISRWMDLQQSINVLFDSKTANSQSLKDGPS 67
            HPHT LL KVLQ+NIALGNA++NNAER +I++RWMDLQQSI+VL+DSKT   QS K GP 
Sbjct: 376  HPHTNLLSKVLQSNIALGNAYINNAERYKIVNRWMDLQQSISVLYDSKTTTGQSQKAGPV 435

Query: 66   GICQLLEKKEGLFRQNMMGKRV 1
            GICQLLEKKEG+FRQ MMGKRV
Sbjct: 436  GICQLLEKKEGIFRQKMMGKRV 457


>ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Vitis
            vinifera]
          Length = 1691

 Score =  435 bits (1118), Expect = e-119
 Identities = 238/446 (53%), Positives = 294/446 (65%), Gaps = 13/446 (2%)
 Frame = -1

Query: 1299 SLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPAY 1120
            S  KIT+P M+D + +P+PGGLYDPA+G +DE++ C+SCG RS++C GHCGHIDLVS  Y
Sbjct: 29   SFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQSCGQRSFYCPGHCGHIDLVSSVY 88

Query: 1119 NPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKKM 940
            NPLL N L++LL KTCF C  F++S+  V   VSQLE I +GD+VGAKN+          
Sbjct: 89   NPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLELISKGDVVGAKNL---------- 138

Query: 939  DWIVPDDIVDPEDCQGSQSSHSGVFSDG--EKLDEH-KEGFWDSSQLTESKSVLIXXXXX 769
            D I P +   PED  GS  S S   +    +    H K+  W S Q  E+ SV+      
Sbjct: 139  DSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQCIEAMSVMDNFLKL 198

Query: 768  XXXXXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSRLNVTHSGGGDDRPSSEVL 589
                    K  +P++TKPTFGWFH++GLS  Q R+N I  S+L    S   +++ SSEV 
Sbjct: 199  KHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLERPLSRVAEEKSSSEVE 258

Query: 588  NASD-YSLNDGSETAEAH------DXXXXXXXXXXKQKRNQGLLD---TTNYTSGPLLPS 439
            N +D +   DG +T E H      D          ++K  Q  ++     ++ SGPLLPS
Sbjct: 259  NVNDMFPWGDGVDTDETHSSIAPTDGIQDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPS 318

Query: 438  EVRDILRRLWENEAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGD 259
            EVRDI+ RLWENEA LCS+I DI   +    GN +GY+MFFLETILVPPIKFRPP+KG  
Sbjct: 319  EVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQI 378

Query: 258  SVMEHPHTLLLGKVLQANIALGNAHMNNAERSRIISRWMDLQQSINVLFDSKTANSQSLK 79
            SVMEHP T+LLGKVLQANIALGNAH NN+ERS+IISRWMDLQQSINVLFD KTA  Q  +
Sbjct: 379  SVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWMDLQQSINVLFDGKTAAGQGQR 438

Query: 78   DGPSGICQLLEKKEGLFRQNMMGKRV 1
            D  SGICQLLEKKEG+FRQ MMGKRV
Sbjct: 439  DTGSGICQLLEKKEGVFRQKMMGKRV 464


>ref|XP_010036456.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X2
            [Eucalyptus grandis]
          Length = 1669

 Score =  420 bits (1080), Expect = e-114
 Identities = 226/442 (51%), Positives = 284/442 (64%), Gaps = 8/442 (1%)
 Frame = -1

Query: 1302 QSLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPA 1123
            QS VK+TN  ++D +++P+ GGLYDPAMG L++++ACKSCG RS++C GHCGHIDLVSP 
Sbjct: 27   QSCVKVTNTVLLDNVERPVAGGLYDPAMGTLNDTTACKSCGQRSFNCPGHCGHIDLVSPV 86

Query: 1122 YNPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKK 943
            YNPLL NTL +LL +TCF CF FR S  +V  CVS+LE I +GD+ GAK +  K      
Sbjct: 87   YNPLLFNTLYNLLKRTCFFCFHFRESRSQVDACVSKLELIAKGDVAGAKELDSKWATNSS 146

Query: 942  MDWIVPDDIVDPEDCQGSQSSHSGVFSD--GEKLDEHKEGFWDSSQLTESKSVLIXXXXX 769
            +           E   G   S S V SD   +     K+G W S Q  E+ SVL      
Sbjct: 147  L----------REASNGGDVSCSTVRSDLQHDSPVHQKQGEWTSLQFNEAMSVLNKFLKP 196

Query: 768  XXXXXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSRLNVTHSGGGDDRPSSEVL 589
                    K  NPKI+KPTFGWFH+SG++  Q R N I  ++++     G  +  S E  
Sbjct: 197  TYKECKNCKAKNPKISKPTFGWFHMSGMTGAQTRGNIIRGNKMDGPFLDGDGEMESLEGA 256

Query: 588  NASDYSLNDGSETAEAHDXXXXXXXXXXKQKRNQG------LLDTTNYTSGPLLPSEVRD 427
               D   N+    +               QK+ +G       +   N+ SGPLLPSEV++
Sbjct: 257  FLQDDGGNEAETQSSTFASPDGIGIAKKGQKKRKGHSLSDEYIKQKNFFSGPLLPSEVKE 316

Query: 426  ILRRLWENEAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGDSVME 247
            I++ LWENEAPLCS+I DIQ + +   GN + ++MFFL T+LVPPIKFRPP+KGGDSVME
Sbjct: 317  IMKLLWENEAPLCSFISDIQQQGS---GNSATHSMFFLGTVLVPPIKFRPPSKGGDSVME 373

Query: 246  HPHTLLLGKVLQANIALGNAHMNNAERSRIISRWMDLQQSINVLFDSKTANSQSLKDGPS 67
            HPHT+LL KVLQANI+LGNAH +N  R+ IISRWMDLQQSIN+LFDSKTA  Q  +D  S
Sbjct: 374  HPHTVLLAKVLQANISLGNAHQSN--RATIISRWMDLQQSINLLFDSKTATGQGRRDVAS 431

Query: 66   GICQLLEKKEGLFRQNMMGKRV 1
            GICQLLEKKEG+FRQNMMGKRV
Sbjct: 432  GICQLLEKKEGMFRQNMMGKRV 453


>ref|XP_010036455.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X1
            [Eucalyptus grandis]
          Length = 1669

 Score =  420 bits (1080), Expect = e-114
 Identities = 226/442 (51%), Positives = 284/442 (64%), Gaps = 8/442 (1%)
 Frame = -1

Query: 1302 QSLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPA 1123
            QS VK+TN  ++D +++P+ GGLYDPAMG L++++ACKSCG RS++C GHCGHIDLVSP 
Sbjct: 27   QSCVKVTNTVLLDNVERPVAGGLYDPAMGTLNDTTACKSCGQRSFNCPGHCGHIDLVSPV 86

Query: 1122 YNPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKK 943
            YNPLL NTL +LL +TCF CF FR S  +V  CVS+LE I +GD+ GAK +  K      
Sbjct: 87   YNPLLFNTLYNLLKRTCFFCFHFRESRSQVDACVSKLELIAKGDVAGAKELDSKWATNSS 146

Query: 942  MDWIVPDDIVDPEDCQGSQSSHSGVFSD--GEKLDEHKEGFWDSSQLTESKSVLIXXXXX 769
            +           E   G   S S V SD   +     K+G W S Q  E+ SVL      
Sbjct: 147  L----------REASNGGDVSCSTVRSDLQHDSPVHQKQGEWTSLQFNEAMSVLNKFLKP 196

Query: 768  XXXXXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSRLNVTHSGGGDDRPSSEVL 589
                    K  NPKI+KPTFGWFH+SG++  Q R N I  ++++     G  +  S E  
Sbjct: 197  TYKECKNCKAKNPKISKPTFGWFHMSGMTGAQTRGNIIRGNKMDGPFLDGDGEMESLEGA 256

Query: 588  NASDYSLNDGSETAEAHDXXXXXXXXXXKQKRNQG------LLDTTNYTSGPLLPSEVRD 427
               D   N+    +               QK+ +G       +   N+ SGPLLPSEV++
Sbjct: 257  FLQDDGGNEAETQSSTFASPDGIGIAKKGQKKRKGHSLSDEYIKQKNFFSGPLLPSEVKE 316

Query: 426  ILRRLWENEAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGDSVME 247
            I++ LWENEAPLCS+I DIQ + +   GN + ++MFFL T+LVPPIKFRPP+KGGDSVME
Sbjct: 317  IMKLLWENEAPLCSFISDIQQQGS---GNSATHSMFFLGTVLVPPIKFRPPSKGGDSVME 373

Query: 246  HPHTLLLGKVLQANIALGNAHMNNAERSRIISRWMDLQQSINVLFDSKTANSQSLKDGPS 67
            HPHT+LL KVLQANI+LGNAH +N  R+ IISRWMDLQQSIN+LFDSKTA  Q  +D  S
Sbjct: 374  HPHTVLLAKVLQANISLGNAHQSN--RATIISRWMDLQQSINLLFDSKTATGQGRRDVAS 431

Query: 66   GICQLLEKKEGLFRQNMMGKRV 1
            GICQLLEKKEG+FRQNMMGKRV
Sbjct: 432  GICQLLEKKEGMFRQNMMGKRV 453


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  418 bits (1075), Expect = e-114
 Identities = 229/436 (52%), Positives = 280/436 (64%), Gaps = 3/436 (0%)
 Frame = -1

Query: 1299 SLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPAY 1120
            S  KIT+P M+D + +P+PGGLYDPA+G +DE++ C+SCG RS++C GHCGHIDLVS  Y
Sbjct: 29   SFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQSCGQRSFYCPGHCGHIDLVSSVY 88

Query: 1119 NPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKKM 940
            NPLL N L++LL KTCF C  F++S+  V   VSQLE I +GD+VGAKN+          
Sbjct: 89   NPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLELISKGDVVGAKNL---------- 138

Query: 939  DWIVPDDIVDPEDCQGSQSSHSGVFSDG--EKLDEH-KEGFWDSSQLTESKSVLIXXXXX 769
            D I P +   PED  GS  S S   +    +    H K+  W S Q  E+ SV+      
Sbjct: 139  DSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQCIEAMSVMDNFLKL 198

Query: 768  XXXXXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSRLNVTHSGGGDDRPSSEVL 589
                    K  +P++TKPTFGWFH++GLS  Q R+N I  S+L    +G   D   S + 
Sbjct: 199  KHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLERPLNGVDTDETHSSI- 257

Query: 588  NASDYSLNDGSETAEAHDXXXXXXXXXXKQKRNQGLLDTTNYTSGPLLPSEVRDILRRLW 409
                      + T    D           Q   +  +   ++ SGPLLPSEVRDI+ RLW
Sbjct: 258  ----------APTDGIQDTVTKRLERKGAQAPIE-FIKQKSFFSGPLLPSEVRDIMERLW 306

Query: 408  ENEAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGDSVMEHPHTLL 229
            ENEA LCS+I DI   +    GN +GY+MFFLETILVPPIKFRPP+KG  SVMEHP T+L
Sbjct: 307  ENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQTVL 366

Query: 228  LGKVLQANIALGNAHMNNAERSRIISRWMDLQQSINVLFDSKTANSQSLKDGPSGICQLL 49
            LGKVLQANIALGNAH NN+ERS+IISRWMDLQQSINVLFD KTA  Q  +D  SGICQLL
Sbjct: 367  LGKVLQANIALGNAHANNSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQLL 426

Query: 48   EKKEGLFRQNMMGKRV 1
            EKKEG+FRQ MMGKRV
Sbjct: 427  EKKEGVFRQKMMGKRV 442


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score =  417 bits (1073), Expect = e-114
 Identities = 226/448 (50%), Positives = 292/448 (65%), Gaps = 15/448 (3%)
 Frame = -1

Query: 1299 SLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPAY 1120
            S+VK+T+PN++D L  P+P GLYDPAMGPLD  S CK C     +C+GHCGHI+LVSP Y
Sbjct: 26   SVVKVTSPNLLDGLQLPVPNGLYDPAMGPLDHYSQCKFCC--QSNCSGHCGHIELVSPVY 83

Query: 1119 NPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKKM 940
            NPLL N L++LL +TCF CF FR+S  EV  CVS+LE I +GD+VGAK           +
Sbjct: 84   NPLLFNMLHNLLQRTCFYCFHFRASRAEVEKCVSELELIAKGDVVGAK----------MI 133

Query: 939  DWIVPDDIVDPEDCQGSQSSHSGVFSDGEKLDEHKE----GFWDSSQLTESKSVLIXXXX 772
            D + PD+  D E+ +GS   H     D   + +H+E      WD+ Q TE+ +V+     
Sbjct: 134  DALSPDNSTDREESEGS---HMSCAMDDLNMQDHREYNKRPSWDNFQFTEAMAVIDRILK 190

Query: 771  XXXXXXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSR-LNVTHSGGGDDRPSSE 595
                     K  NPKI KP+FG FH+  +S+ QIR N I S R  N+  +GG ++ PS E
Sbjct: 191  TKTEKCSNCKAKNPKIRKPSFGRFHMD-ISNKQIRENYINSGRRFNLHDTGGSEENPSPE 249

Query: 594  VLNASD----------YSLNDGSETAEAHDXXXXXXXXXXKQKRNQGLLDTTNYTSGPLL 445
            V+NA++           +  DG E ++A            +Q+++          S   L
Sbjct: 250  VVNATEPLGEAETSLCVTSTDGVENSKARKRQGGDQSDVVEQQKDS--------FSVAHL 301

Query: 444  PSEVRDILRRLWENEAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKG 265
            PS+VR I+  LWENEAPLC++ CDIQ + +   G ++G +MFFL++ILVPPIKFRPPAKG
Sbjct: 302  PSQVRSIIEHLWENEAPLCTFFCDIQSQHHNTSGKVAGPSMFFLDSILVPPIKFRPPAKG 361

Query: 264  GDSVMEHPHTLLLGKVLQANIALGNAHMNNAERSRIISRWMDLQQSINVLFDSKTANSQS 85
            GDS+MEHPHT+LLGKV+QANIALGNAH+N A RS+IISR MDLQQS+NVLFDSKTA+   
Sbjct: 362  GDSIMEHPHTVLLGKVVQANIALGNAHINRAGRSKIISRLMDLQQSVNVLFDSKTASGPG 421

Query: 84   LKDGPSGICQLLEKKEGLFRQNMMGKRV 1
             KD  SGICQ+LEKKEG+FRQ MMGKRV
Sbjct: 422  QKDVGSGICQMLEKKEGIFRQKMMGKRV 449


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Solanum
            lycopersicum]
          Length = 1677

 Score =  415 bits (1066), Expect = e-113
 Identities = 224/448 (50%), Positives = 289/448 (64%), Gaps = 15/448 (3%)
 Frame = -1

Query: 1299 SLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPAY 1120
            S+VK+T+PN++D L  P+P GLYDPAMGPLD  S CK C     +C+GHCGHI+LVSP Y
Sbjct: 26   SVVKVTSPNLLDGLQLPVPNGLYDPAMGPLDHYSQCKFCS--QSNCSGHCGHIELVSPVY 83

Query: 1119 NPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKKM 940
            NPLL N L++LL +TCF CF FR+S  EV  CVS+LE I +GD+VGAK           +
Sbjct: 84   NPLLFNMLHNLLQRTCFYCFHFRASRAEVEKCVSELELIAKGDVVGAK----------MI 133

Query: 939  DWIVPDDIVDPEDCQGSQSSHSGVFSDGEKLDEH----KEGFWDSSQLTESKSVLIXXXX 772
            D + PD+  D E+ +GS   H     D   + +H    K   WD+ Q TE+ +V+     
Sbjct: 134  DALSPDNSTDREESEGS---HMSCTMDDLNVRDHCEYNKRPSWDNFQFTEAMAVIDRILK 190

Query: 771  XXXXXXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSR-LNVTHSGGGDDRPSSE 595
                     K  NPKI KP+FG FH+  +S+ QIR N I S R  N+  +GG ++ PS E
Sbjct: 191  TKTEKCSNCKAKNPKIRKPSFGRFHMD-ISNKQIRENYINSGRRFNLHDTGGSEENPSPE 249

Query: 594  VLNASD----------YSLNDGSETAEAHDXXXXXXXXXXKQKRNQGLLDTTNYTSGPLL 445
            V+NA++           +  DG E ++             +Q+++          S   L
Sbjct: 250  VVNATEPLGEAETSLCVTSTDGVENSKGRKRQGGDQSDVVEQQKDS--------FSVAHL 301

Query: 444  PSEVRDILRRLWENEAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKG 265
            PS+VR I+  LWENEAPLC++ CDIQ +     G ++G +MFFL++ILVPP+KFRPPAKG
Sbjct: 302  PSQVRSIIEHLWENEAPLCTFFCDIQSQHRNTSGKVAGPSMFFLDSILVPPVKFRPPAKG 361

Query: 264  GDSVMEHPHTLLLGKVLQANIALGNAHMNNAERSRIISRWMDLQQSINVLFDSKTANSQS 85
            GDS+MEHPHT+LLGKV+QANIALGNAH+N A RS+IISR MDLQQS+NVLFDSKTA+   
Sbjct: 362  GDSIMEHPHTVLLGKVIQANIALGNAHINRAGRSKIISRLMDLQQSVNVLFDSKTASGPG 421

Query: 84   LKDGPSGICQLLEKKEGLFRQNMMGKRV 1
             KD  SGICQ+LEKKEG+FRQ MMGKRV
Sbjct: 422  QKDVGSGICQMLEKKEGIFRQKMMGKRV 449


>ref|XP_009790932.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Nicotiana
            sylvestris]
          Length = 1681

 Score =  406 bits (1043), Expect = e-110
 Identities = 219/439 (49%), Positives = 285/439 (64%), Gaps = 6/439 (1%)
 Frame = -1

Query: 1299 SLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPAY 1120
            S+VK+T+PN++D L  P+PGGLYDPAMGPL E S CKSCG  + HC GHCGHI+LVSP +
Sbjct: 26   SVVKVTSPNLLDTLGGPLPGGLYDPAMGPLSERSQCKSCGQGTVHCPGHCGHIELVSPVF 85

Query: 1119 NPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKKM 940
            NPLL N L++LL +TCF CF FR+S  EV  CVS+LE I +GD++G K M          
Sbjct: 86   NPLLFNMLHNLLQRTCFYCFHFRASKEEVEKCVSELELIAKGDVIGPKTM---------- 135

Query: 939  DWIVPDDIVDPEDCQGSQSSHSGVFSDGEKLDE----HKEGFWDSSQLTESKSVLIXXXX 772
            D + PD+  D E+ +GS   H    +D  KL +    +K   WD+ Q TE+ +V+     
Sbjct: 136  DVLSPDNSADREESEGS---HMSCTTDDLKLQDRSEYNKRPSWDNFQFTEAMAVIDRILK 192

Query: 771  XXXXXXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSRL-NVTHSGGGDDRPSSE 595
                     +  NPKI KP+FG FH+  +SS QI  N I  S++ N+  +GG ++  S E
Sbjct: 193  TKSEKCSNCETKNPKINKPSFGRFHMD-ISSKQIIFNYIKKSQMFNLQRTGGSEENLSPE 251

Query: 594  VLNASD-YSLNDGSETAEAHDXXXXXXXXXXKQKRNQGLLDTTNYTSGPLLPSEVRDILR 418
            V+NA++     + S +  + D          +      ++   +  S   LPS+VR I+ 
Sbjct: 252  VVNATEPLGEAETSLSMASSDRLENSMARGRQGDEEYIVMQQKDLFSVAHLPSQVRKIIE 311

Query: 417  RLWENEAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGDSVMEHPH 238
             LWENEA LC++ C+IQ +       ++G +MFFL++ILVPPI+FRPPAKGGDSVMEHPH
Sbjct: 312  HLWENEARLCAFFCNIQGQHLNTPSKVAGPSMFFLDSILVPPIRFRPPAKGGDSVMEHPH 371

Query: 237  TLLLGKVLQANIALGNAHMNNAERSRIISRWMDLQQSINVLFDSKTANSQSLKDGPSGIC 58
            T+LLGKVLQ+NIALGNAH N A RS+IISR MDLQQS+N+LFDSKTA     KD   GIC
Sbjct: 372  TVLLGKVLQSNIALGNAHSNRAGRSKIISRLMDLQQSVNILFDSKTAAGPGQKDVGVGIC 431

Query: 57   QLLEKKEGLFRQNMMGKRV 1
            QLLEKKEG+FRQ MMGKRV
Sbjct: 432  QLLEKKEGIFRQKMMGKRV 450


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  394 bits (1013), Expect = e-107
 Identities = 222/441 (50%), Positives = 281/441 (63%), Gaps = 8/441 (1%)
 Frame = -1

Query: 1299 SLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPAY 1120
            S VKITNP ++D++++P+PGGLYDPA+GPL E + CK+CG RS +C GHCGHIDLVSP Y
Sbjct: 32   SFVKITNPRLLDLVERPVPGGLYDPALGPLSERTICKTCGQRSTNCPGHCGHIDLVSPVY 91

Query: 1119 NPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKKM 940
            NPLL N L+ LL +TCF CF FR    +V  C+ QLE I +GDIVGA          K++
Sbjct: 92   NPLLFNFLHKLLQRTCFLCFHFRMQRGQVEKCIKQLELIVKGDIVGA----------KRL 141

Query: 939  DWIVPDDIVDPEDCQGSQSS----HSGV-FSDGEKLDEHKEGFWDSSQLTESKSVLIXXX 775
            + + P + + PE+   S  S    HSGV  +DGE     ++  W S Q TE+ SVL    
Sbjct: 142  ESVSPSEALYPEESDLSHESCPTIHSGVQCNDGE---HTRQQGWTSLQFTEAMSVLNNFL 198

Query: 774  XXXXXXXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSRLNVTHSGGGDDRPSSE 595
                      + +NP ITKPTFGWFH SG+S   IR+N I   +L     GG      SE
Sbjct: 199  KPKFKKCKNCESSNPNITKPTFGWFHTSGMSDASIRANVITGHQL-----GG---LLGSE 250

Query: 594  VLNASDYSLNDGSETAEAHDXXXXXXXXXXKQKRNQGLLDTTNYT---SGPLLPSEVRDI 424
            +   +D  + D +E  + H           K+K  + +L+ T      S  LLPSEV++ 
Sbjct: 251  IEGTTD--VEDAAEPGDQHS-----GTKKHKKKERKEVLEFTRQKSTFSKQLLPSEVKEK 303

Query: 423  LRRLWENEAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGDSVMEH 244
            L  LW+NEA +CS+I D+Q  Q +     +G  MFFLETILVPPIKFRPP KGGDSVMEH
Sbjct: 304  LELLWKNEARICSFISDLQ--QQEFGKRKAGPAMFFLETILVPPIKFRPPTKGGDSVMEH 361

Query: 243  PHTLLLGKVLQANIALGNAHMNNAERSRIISRWMDLQQSINVLFDSKTANSQSLKDGPSG 64
            P T+LL KVLQ+NI+LG+AH+N  E S+I+ RW+DLQQSIN LFDSKTA     ++G  G
Sbjct: 362  PQTVLLSKVLQSNISLGDAHINK-EHSKIVRRWLDLQQSINTLFDSKTAKGPGQREGAPG 420

Query: 63   ICQLLEKKEGLFRQNMMGKRV 1
            ICQLLEKKEGLFRQ MMGKRV
Sbjct: 421  ICQLLEKKEGLFRQKMMGKRV 441


>ref|XP_012470632.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Gossypium
            raimondii] gi|763751831|gb|KJB19219.1| hypothetical
            protein B456_003G089300 [Gossypium raimondii]
          Length = 1674

 Score =  390 bits (1001), Expect = e-105
 Identities = 216/438 (49%), Positives = 281/438 (64%), Gaps = 5/438 (1%)
 Frame = -1

Query: 1299 SLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPAY 1120
            S++K+TN N++D +++P+PGGLYDP +GPL++ + CKSCGL   HC GHCGHIDLVSP Y
Sbjct: 29   SVLKLTNANLLDFMNRPMPGGLYDPVLGPLEDRTPCKSCGLLKLHCPGHCGHIDLVSPIY 88

Query: 1119 NPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKKM 940
            NPLL N L++L+ +TCF C+ FR+   EV  C+SQL+ IG+GDIVGA          K++
Sbjct: 89   NPLLFNFLHTLIQRTCFFCYHFRAERTEVEKCISQLKLIGKGDIVGA----------KRL 138

Query: 939  DWIVPDDIVDPEDCQGSQSSHSGVFSDGEKLDEHKEGFWDSSQLTESKSVLIXXXXXXXX 760
            D    D    PE+ +G Q   S +  + E ++  +   W S QLTE+ SVL         
Sbjct: 139  DSDSKDSSSHPENSEGCQKLGSRL-HESEAVNPKE---WTSLQLTEAMSVLNKFLKVKYK 194

Query: 759  XXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSRLNVTHSG--GGDDRPSSEVLN 586
                    NP ITKPTFGWFH SG+S +Q+R N I   ++  T SG  G D   +++  +
Sbjct: 195  RCKNCDAKNPAITKPTFGWFHTSGMSGSQMRENVIRGCKMADTFSGEVGSDIEDANDASS 254

Query: 585  ASDYSLNDGSETAEAHDXXXXXXXXXXKQKRNQGL--LDTTNYTSGPLLPSEVRDILRRL 412
            + +      ++T E             ++K    L  L   N  SGPLLPSEV+ +++ L
Sbjct: 255  SEEGVDITKTKTPEIGFKGADGTSAKARKKAKVPLEFLKQKNLFSGPLLPSEVKKVMKLL 314

Query: 411  WENEAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGDSVMEHPHTL 232
            WENE  LCS I  IQ +     G   GY+MFFLET+LVPPIKFR P KGGDSVMEHP T+
Sbjct: 315  WENEIELCSLINCIQQQG---FGEKVGYSMFFLETVLVPPIKFRAPTKGGDSVMEHPQTV 371

Query: 231  LLGKVLQANIALGNAHMNNAERSRIISR-WMDLQQSINVLFDSKTANSQSLKDGPSGICQ 55
            LL KVLQANI+LGNA+ N+ + S++I R WMDLQQSIN+LFDSKTA SQ  +D   GICQ
Sbjct: 372  LLSKVLQANISLGNAYNNDLQSSKVIVRLWMDLQQSINLLFDSKTAMSQR-RDVSPGICQ 430

Query: 54   LLEKKEGLFRQNMMGKRV 1
            LLE+KEG+FRQ MMGKRV
Sbjct: 431  LLERKEGMFRQKMMGKRV 448


>gb|KHG00372.1| DNA-directed RNA polymerase I subunit rpa[2] [Gossypium arboreum]
          Length = 789

 Score =  388 bits (997), Expect = e-105
 Identities = 215/438 (49%), Positives = 281/438 (64%), Gaps = 5/438 (1%)
 Frame = -1

Query: 1299 SLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPAY 1120
            S++K+TN N++D +++P+PGGLYDP +GPL++ + CKSCGL   HC GHCGHIDLVSP Y
Sbjct: 29   SVLKLTNANLLDFMNRPMPGGLYDPVLGPLEDRTPCKSCGLLKLHCPGHCGHIDLVSPIY 88

Query: 1119 NPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKKM 940
            NPLL N L++L+ +TCF C+ FR+   EV  C+SQL+ IG+GDIVGA          K++
Sbjct: 89   NPLLFNFLHTLVQRTCFFCYHFRAERTEVERCISQLKLIGKGDIVGA----------KRL 138

Query: 939  DWIVPDDIVDPEDCQGSQSSHSGVFSDGEKLDEHKEGFWDSSQLTESKSVLIXXXXXXXX 760
            D    D    PE+ +G Q   S +  + E ++  +   W S QLTE+ SVL         
Sbjct: 139  DTDSKDSSSHPENSEGCQKLGSRL-HESEAVNPKE---WTSLQLTEAMSVLNKFLKVKYK 194

Query: 759  XXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSRLNVTHSG--GGDDRPSSEVLN 586
                    NP ITKPTFGWFH SG+S +Q+R N I   ++  T SG  G D   +++  +
Sbjct: 195  RCKNCDAKNPAITKPTFGWFHTSGMSGSQMRENVIRGCKMADTFSGEVGSDIEDANDASS 254

Query: 585  ASDYSLNDGSETAEAHDXXXXXXXXXXKQKRNQGL--LDTTNYTSGPLLPSEVRDILRRL 412
            + +      ++T E             ++K    L  L   N  SGPLLPSEV+ +++ L
Sbjct: 255  SEEGVDIKKTKTPEIGFKGADGTSTKARKKAKVPLEFLKQKNLFSGPLLPSEVKKVMKLL 314

Query: 411  WENEAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGDSVMEHPHTL 232
            WENE  LCS I  IQ +     G   G++MFFLET+LVPPIKFR P KGGDSVMEHP T+
Sbjct: 315  WENEIELCSLINCIQQQG---FGEKVGFSMFFLETVLVPPIKFRAPTKGGDSVMEHPQTV 371

Query: 231  LLGKVLQANIALGNAHMNNAERSRIISR-WMDLQQSINVLFDSKTANSQSLKDGPSGICQ 55
            LL KVLQANI+LGNA+ N+ + S++I R WMDLQQSIN+LFDSKTA SQ  +D   GICQ
Sbjct: 372  LLSKVLQANISLGNAYNNDLQSSKVIVRLWMDLQQSINLLFDSKTAMSQR-RDVSPGICQ 430

Query: 54   LLEKKEGLFRQNMMGKRV 1
            LLE+KEG+FRQ MMGKRV
Sbjct: 431  LLERKEGMFRQKMMGKRV 448


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  383 bits (984), Expect = e-103
 Identities = 218/443 (49%), Positives = 271/443 (61%), Gaps = 10/443 (2%)
 Frame = -1

Query: 1299 SLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPAY 1120
            S +K+TN N++D++D+P+PGGLYD  +GPL++ + CKSCGL   HC GHCGHIDLVSP Y
Sbjct: 29   SFLKVTNANLLDLMDRPMPGGLYDAVLGPLEDRTPCKSCGLLKLHCPGHCGHIDLVSPIY 88

Query: 1119 NPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKKM 940
            NPLL N L++LL + CF C+ FR+   EV  CVSQL+ IG GDIVGAK +     D    
Sbjct: 89   NPLLFNFLHTLLQRICFFCYHFRAEKTEVERCVSQLKLIGNGDIVGAKRLDSDSADASSY 148

Query: 939  DWIVPDDIVDPEDCQGSQSSHSGVFSDGEKLDEHKEGFWDSSQLTESKSVLIXXXXXXXX 760
                       +  +GSQ S S V +     +  K   W S QL E+ SVL         
Sbjct: 149  S----------DYNEGSQESGSIVHNS----EAVKPKEWTSLQLMEAMSVLNNFLKLKYN 194

Query: 759  XXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSRLNVTHSGGGDDRPSSEVLNAS 580
                    NP ITKP FGW H++G+   Q+R N I   ++  T S    D   S + +A 
Sbjct: 195  KCKNCDAKNPNITKPVFGWLHMNGMLGAQMRENVIRGCKMVDTFS----DEAGSGLEDAD 250

Query: 579  DYSLNDGS------ETAEAHDXXXXXXXXXXKQKRNQGLLD---TTNYTSGPLLPSEVRD 427
            D S +         +T+E             ++K+ Q  L+     N  SGPLLPSEV+ 
Sbjct: 251  DVSSSGNGVDIAEMDTSEIGFTGSEGNGAKARKKKAQVPLEFMKQKNLFSGPLLPSEVKK 310

Query: 426  ILRRLWENEAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGDSVME 247
            I + LWENE  LCS I DIQ +     G   GY+MFFLETILVPPIKFR P KGGDSVME
Sbjct: 311  ITKLLWENEVELCSIISDIQQQG---FGKKVGYSMFFLETILVPPIKFRAPTKGGDSVME 367

Query: 246  HPHTLLLGKVLQANIALGNAHMNNAERSRIISR-WMDLQQSINVLFDSKTANSQSLKDGP 70
            HP T+LL KVLQANI+LGNA+ NN + S+ + R WMDLQQS+N+LFDSKTA SQ  +D  
Sbjct: 368  HPQTVLLSKVLQANISLGNAYTNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMSQG-RDVS 426

Query: 69   SGICQLLEKKEGLFRQNMMGKRV 1
            SGICQLLEKKEG+FRQ MMGKRV
Sbjct: 427  SGICQLLEKKEGMFRQKMMGKRV 449


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
            gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
            putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score =  383 bits (984), Expect = e-103
 Identities = 218/443 (49%), Positives = 271/443 (61%), Gaps = 10/443 (2%)
 Frame = -1

Query: 1299 SLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPAY 1120
            S +K+TN N++D++D+P+PGGLYD  +GPL++ + CKSCGL   HC GHCGHIDLVSP Y
Sbjct: 29   SFLKVTNANLLDLMDRPMPGGLYDAVLGPLEDRTPCKSCGLLKLHCPGHCGHIDLVSPIY 88

Query: 1119 NPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKKM 940
            NPLL N L++LL + CF C+ FR+   EV  CVSQL+ IG GDIVGAK +     D    
Sbjct: 89   NPLLFNFLHTLLQRICFFCYHFRAEKTEVERCVSQLKLIGNGDIVGAKRLDSDSADASSY 148

Query: 939  DWIVPDDIVDPEDCQGSQSSHSGVFSDGEKLDEHKEGFWDSSQLTESKSVLIXXXXXXXX 760
                       +  +GSQ S S V +     +  K   W S QL E+ SVL         
Sbjct: 149  S----------DYNEGSQESGSIVHNS----EAVKPKEWTSLQLMEAMSVLNNFLKLKYN 194

Query: 759  XXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSRLNVTHSGGGDDRPSSEVLNAS 580
                    NP ITKP FGW H++G+   Q+R N I   ++  T S    D   S + +A 
Sbjct: 195  KCKNCDAKNPNITKPVFGWLHMNGMLGAQMRENVIRGCKMVDTFS----DEAGSGLEDAD 250

Query: 579  DYSLNDGS------ETAEAHDXXXXXXXXXXKQKRNQGLLD---TTNYTSGPLLPSEVRD 427
            D S +         +T+E             ++K+ Q  L+     N  SGPLLPSEV+ 
Sbjct: 251  DVSSSGNGVDIAEMDTSEIGFTGSEGNGAKARKKKAQVPLEFMKQKNLFSGPLLPSEVKK 310

Query: 426  ILRRLWENEAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGDSVME 247
            I + LWENE  LCS I DIQ +     G   GY+MFFLETILVPPIKFR P KGGDSVME
Sbjct: 311  ITKLLWENEVELCSIISDIQQQG---FGKKVGYSMFFLETILVPPIKFRAPTKGGDSVME 367

Query: 246  HPHTLLLGKVLQANIALGNAHMNNAERSRIISR-WMDLQQSINVLFDSKTANSQSLKDGP 70
            HP T+LL KVLQANI+LGNA+ NN + S+ + R WMDLQQS+N+LFDSKTA SQ  +D  
Sbjct: 368  HPQTVLLSKVLQANISLGNAYTNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMSQG-RDVS 426

Query: 69   SGICQLLEKKEGLFRQNMMGKRV 1
            SGICQLLEKKEG+FRQ MMGKRV
Sbjct: 427  SGICQLLEKKEGMFRQKMMGKRV 449


>ref|XP_011652120.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Cucumis
            sativus] gi|778684907|ref|XP_011652121.1| PREDICTED:
            DNA-directed RNA polymerase I subunit RPA1 [Cucumis
            sativus] gi|700204204|gb|KGN59337.1| hypothetical protein
            Csa_3G811600 [Cucumis sativus]
          Length = 1681

 Score =  378 bits (970), Expect = e-102
 Identities = 206/434 (47%), Positives = 274/434 (63%)
 Frame = -1

Query: 1302 QSLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPA 1123
            QS+VK+T P ++D + +P+ GGLYDPAMG LDE++ CKSCG R ++C GHCGHIDLVSP 
Sbjct: 28   QSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKSCGQRPFYCPGHCGHIDLVSPV 87

Query: 1122 YNPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKK 943
            YNPLL   L++ L  TCFSC  FR+    V NC + LE I +G+I  AK + ++ ++ K 
Sbjct: 88   YNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLELILDGEIAKAKELEEEWMNSKS 147

Query: 942  MDWIVPDDIVDPEDCQGSQSSHSGVFSDGEKLDEHKEGFWDSSQLTESKSVLIXXXXXXX 763
                             ++SSHS +++   K  + +   W S Q +E+ SV+        
Sbjct: 148  R----------------TKSSHS-MYTYERKNGQPET--WTSLQFSEAISVVTKFLKPKQ 188

Query: 762  XXXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSRLNVTHSGGGDDRPSSEVLNA 583
                     +PKITKPTFGWFH+ GL+  Q R+NAI  S+  V+ S G +   S E    
Sbjct: 189  SNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSK-PVSVSSGAEGVSSLEEETT 247

Query: 582  SDYSLNDGSETAEAHDXXXXXXXXXXKQKRNQGLLDTTNYTSGPLLPSEVRDILRRLWEN 403
            ++ ++ D  + +                     +    N++SG LLPSEV+DIL+RLW+N
Sbjct: 248  TEATVEDFEDVSPE-------------------VFMQKNFSSGHLLPSEVKDILKRLWKN 288

Query: 402  EAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGDSVMEHPHTLLLG 223
            EA LCS+I DI  + +   GN +G++MFFLE++LVPPIKFRPPAKGGDSVMEHP T+LL 
Sbjct: 289  EALLCSFISDISQQGH---GNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLN 345

Query: 222  KVLQANIALGNAHMNNAERSRIISRWMDLQQSINVLFDSKTANSQSLKDGPSGICQLLEK 43
            KVLQ+NI+LGN H N +E S+I+  WMDLQQSIN+LFDSK+A      D   GICQLLEK
Sbjct: 346  KVLQSNISLGNGHANKSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEK 405

Query: 42   KEGLFRQNMMGKRV 1
            KEG+FRQ MMGKRV
Sbjct: 406  KEGMFRQKMMGKRV 419


>ref|XP_008443105.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            rpa1 [Cucumis melo]
          Length = 1681

 Score =  378 bits (970), Expect = e-102
 Identities = 207/433 (47%), Positives = 267/433 (61%)
 Frame = -1

Query: 1299 SLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPAY 1120
            S VK+T P ++D + +P+ GGLYDPAMG LDE++ CKSCG R ++C GHCGHIDLVSP Y
Sbjct: 29   SAVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKSCGQRPFYCPGHCGHIDLVSPVY 88

Query: 1119 NPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKKM 940
            NPLL  TL++ L  TCFSC  FR+    V  C + LE I +G++  AK +  + LD    
Sbjct: 89   NPLLFVTLHNFLRCTCFSCHHFRAGEFMVEKCKTLLELILDGEVAKAKELEDEWLDSTSR 148

Query: 939  DWIVPDDIVDPEDCQGSQSSHSGVFSDGEKLDEHKEGFWDSSQLTESKSVLIXXXXXXXX 760
                            ++SSH+ +++   K  + K   W S Q +E+ SV+         
Sbjct: 149  ----------------TKSSHA-MYTYERKNVQPKT--WTSLQFSEAMSVVNRFLKPKQS 189

Query: 759  XXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSRLNVTHSGGGDDRPSSEVLNAS 580
                    NPKITKPTFGW H  GL+    R+NAI  S+  V+ S G +   S E    +
Sbjct: 190  NCKYCGAKNPKITKPTFGWLHSKGLTGAHKRANAIRRSK-PVSVSSGAEGVSSLEEETTT 248

Query: 579  DYSLNDGSETAEAHDXXXXXXXXXXKQKRNQGLLDTTNYTSGPLLPSEVRDILRRLWENE 400
            + ++ D  + +                     +    N++SG LLPSEV+DIL+RLW+NE
Sbjct: 249  EATVEDSEDVSPE-------------------IFMQKNFSSGHLLPSEVKDILKRLWKNE 289

Query: 399  APLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGDSVMEHPHTLLLGK 220
            A LCS+I DI  + N   GN +G++MFFLE++LVPPIKFRPPAKGGDS+MEHP T+LL K
Sbjct: 290  ALLCSFISDISQQGN---GNKAGHSMFFLESVLVPPIKFRPPAKGGDSIMEHPQTVLLNK 346

Query: 219  VLQANIALGNAHMNNAERSRIISRWMDLQQSINVLFDSKTANSQSLKDGPSGICQLLEKK 40
            VLQ+NI+LGN H N  E SRI+  WMDLQQSIN+LFDSKTA     KD   GICQLLEKK
Sbjct: 347  VLQSNISLGNGHANKLEHSRIVRLWMDLQQSINILFDSKTAAGPGKKDASLGICQLLEKK 406

Query: 39   EGLFRQNMMGKRV 1
            EG+FRQ MMGKRV
Sbjct: 407  EGMFRQKMMGKRV 419


>ref|XP_010666878.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Beta vulgaris
            subsp. vulgaris] gi|870842325|gb|KMS95772.1| hypothetical
            protein BVRB_005160 [Beta vulgaris subsp. vulgaris]
          Length = 1702

 Score =  374 bits (961), Expect = e-101
 Identities = 206/434 (47%), Positives = 266/434 (61%), Gaps = 1/434 (0%)
 Frame = -1

Query: 1299 SLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPAY 1120
            S+ KITN N+++ + +P PGGLYDPA+GPLD+ S+CK CG RS++C GHCGHIDLVS  Y
Sbjct: 29   SVRKITNQNLLNTVGRPEPGGLYDPALGPLDDDSSCKICGQRSFYCPGHCGHIDLVSLVY 88

Query: 1119 NPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKKM 940
            +PLL N L  LL  TC +C+ F++S  EV  C+ +L  I +G+IV A+ +          
Sbjct: 89   HPLLFNRLYRLLQGTCLACYHFKASREEVKMCICKLNLIKKGNIVRARELNSSER----- 143

Query: 939  DWIVPDDIVDPEDCQGSQSSHSGVFSDGEKLDEHKEGFWDSSQLTESKSVLIXXXXXXXX 760
                PDD            S S ++  G   D   +  W S QLTE+ +VL         
Sbjct: 144  ----PDD------------SDSSLYLGGLSEDPKHQCGWTSFQLTEATAVL-KSFLKKRS 186

Query: 759  XXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSRLNVTHSGGGDDRPSSEVLNAS 580
                    NP ITKP FGW H+ GL+ N I++N I   +L    + G DD+  SEV NA 
Sbjct: 187  AKCYCGAKNPSITKPIFGWIHMGGLNDNHIKANIIRGHKLAGPLAEGDDDKSMSEVENAE 246

Query: 579  DYSLNDGSETAEAHDXXXXXXXXXXKQKRNQGLLDTTNY-TSGPLLPSEVRDILRRLWEN 403
            D    D    A              ++K++    D   + T+  LLP+EVR IL RLWEN
Sbjct: 247  D---QDSGRVASNR-----------RKKKDDLQSDFLKWKTARSLLPTEVRGILERLWEN 292

Query: 402  EAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGDSVMEHPHTLLLG 223
            EA LCS+ICDIQ  Q  I    + +TMFFL+++LVPP KFRPP+KGGD+VMEHP T+LLG
Sbjct: 293  EARLCSFICDIQQHQQNISQKKAAFTMFFLKSLLVPPTKFRPPSKGGDAVMEHPQTVLLG 352

Query: 222  KVLQANIALGNAHMNNAERSRIISRWMDLQQSINVLFDSKTANSQSLKDGPSGICQLLEK 43
            K+L+ NI+L NA+  +AER+ I+SRWM+LQQS+NVLFDSK       +D  SGICQLLEK
Sbjct: 353  KILECNISLANAYEQHAERNYILSRWMNLQQSVNVLFDSKGGAGLRQRDTASGICQLLEK 412

Query: 42   KEGLFRQNMMGKRV 1
            KEGLFRQ MMGKRV
Sbjct: 413  KEGLFRQKMMGKRV 426


>ref|XP_012073009.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha
            curcas]
          Length = 1741

 Score =  372 bits (956), Expect = e-100
 Identities = 214/435 (49%), Positives = 269/435 (61%), Gaps = 2/435 (0%)
 Frame = -1

Query: 1299 SLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPAY 1120
            S VKIT+P ++D++D+P+ GGLYDPA+GPL E + CK+CG R  +C GHCGHIDLVSP Y
Sbjct: 29   SFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTNCPGHCGHIDLVSPVY 88

Query: 1119 NPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKKM 940
            NPLL N L+ LL +TCF CF FR    +V  CV QLE I +GDIVGA          K++
Sbjct: 89   NPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDIVGA----------KRL 138

Query: 939  DWIVPDDIVDPEDCQGSQSSHSGVFSDGE-KLDEH-KEGFWDSSQLTESKSVLIXXXXXX 766
            D ++P + + PE+  GS  S S V S  +    EH K+  W S Q +E+ SVL       
Sbjct: 139  DSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFSEATSVLNTFLMPK 198

Query: 765  XXXXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSRLNVTHSGGGDDRPSSEVLN 586
                      NP ITKP FGWF+ SG++   IR+N I   +L      GG     +EV  
Sbjct: 199  FKKCKNCGAVNPNITKPMFGWFYTSGMTDASIRANIIRGRQL------GGP--LVAEVDE 250

Query: 585  ASDYSLNDGSETAEAHDXXXXXXXXXXKQKRNQGLLDTTNYTSGPLLPSEVRDILRRLWE 406
             +D  + + +E +   D           Q+  +     + + S  LLPSEV+D L  LWE
Sbjct: 251  MTD--VEESAEPSGNQDTDVKRHKKKGSQEAREFYKQRSAF-SKQLLPSEVKDALDLLWE 307

Query: 405  NEAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGDSVMEHPHTLLL 226
            NE  +CS+I D+Q  Q       +G +MFFLETILV  IKFRPP KGGDSV EHP T+LL
Sbjct: 308  NEDRICSFISDLQ--QQGFGKKKAGPSMFFLETILVAAIKFRPPTKGGDSVREHPQTVLL 365

Query: 225  GKVLQANIALGNAHMNNAERSRIISRWMDLQQSINVLFDSKTANSQSLKDGPSGICQLLE 46
             KVL+ANI LG+AH+N  E S+I+ RWMDLQQSIN+LFDSKTA     +D  SGICQLLE
Sbjct: 366  SKVLEANIYLGDAHINK-EHSKIVRRWMDLQQSINILFDSKTAKGPGQRDVTSGICQLLE 424

Query: 45   KKEGLFRQNMMGKRV 1
            KKEGLFRQ MMGKRV
Sbjct: 425  KKEGLFRQKMMGKRV 439


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max] gi|947084325|gb|KRH33046.1| hypothetical protein
            GLYMA_10G095200 [Glycine max]
          Length = 1651

 Score =  372 bits (955), Expect = e-100
 Identities = 209/435 (48%), Positives = 275/435 (63%), Gaps = 2/435 (0%)
 Frame = -1

Query: 1299 SLVKITNPNMVDILDKPIPGGLYDPAMGPLDESSACKSCGLRSYHCNGHCGHIDLVSPAY 1120
            S VKIT+P +VD L  P+P GLYD A+GP D+ S CKSCG  S HC GH GHI+LVSP Y
Sbjct: 29   SRVKITSPILVDFLLHPVPDGLYDAALGPFDDKSLCKSCGQTSKHCPGHFGHIELVSPVY 88

Query: 1119 NPLLVNTLNSLLNKTCFSCFRFRSSTVEVGNCVSQLERIGEGDIVGAKNMRQKMLDKKKM 940
            NPL+ N L+++L +TCF+C  FR+ + EV    SQLE I +GDI+ AK + + ++  K +
Sbjct: 89   NPLMFNILSNILQRTCFTCHHFRAPSKEVDIRTSQLELIMKGDIIRAKRL-ESIIPGKSV 147

Query: 939  DWIVPDDIVDPEDCQGSQSSHSGVFSDGEKLDEHKEGFWDSSQLTESKSVLIXXXXXXXX 760
            D   PD+ + P D   SQ          E+L E+    W S Q +E+ SVL         
Sbjct: 148  DSFNPDESIHPGDGDESQC------YSAEQLGEN----WTSLQFSEAMSVLRKLLTKKHK 197

Query: 759  XXXXXKHNNPKITKPTFGWFHLSGLSSNQIRSNAIMSSRLNVTHSGGGDDRPSSEVLNAS 580
                    NPKI+KPTFGWFH++ LS+++ R++ I S     T+                
Sbjct: 198  KCQKCGAKNPKISKPTFGWFHMNVLSADETRADTIRSVESETTN---------------D 242

Query: 579  DYSLNDGSETAEAHDXXXXXXXXXXKQKRNQ--GLLDTTNYTSGPLLPSEVRDILRRLWE 406
            D SL  G +T +  D          K+K+ +    L   N  SG LLPS+V+ IL  LWE
Sbjct: 243  DISLG-GGDTTDVEDITSAGTAKRDKRKKEKLSYKLAEQNKLSGSLLPSQVKGILELLWE 301

Query: 405  NEAPLCSYICDIQHRQNKIDGNISGYTMFFLETILVPPIKFRPPAKGGDSVMEHPHTLLL 226
            NEA LCSYI DI   Q++  G  +G++MFFLE I VPPIKFRPP KGGD+VMEHP T+LL
Sbjct: 302  NEARLCSYINDI---QDQGFGKKAGHSMFFLENIFVPPIKFRPPTKGGDNVMEHPQTVLL 358

Query: 225  GKVLQANIALGNAHMNNAERSRIISRWMDLQQSINVLFDSKTANSQSLKDGPSGICQLLE 46
             KVLQ NI+LG+AH+N ++ S+++SRWMDLQQS+N+LFD+KTA+ +  +D  +GICQLLE
Sbjct: 359  TKVLQCNISLGDAHLNKSDPSKVLSRWMDLQQSVNMLFDNKTASGK--RDVATGICQLLE 416

Query: 45   KKEGLFRQNMMGKRV 1
            KKEG+FRQ MMGKRV
Sbjct: 417  KKEGIFRQKMMGKRV 431