BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Perilla23_contig00020772
         (1416 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011087492.1| PREDICTED: RNA polymerase II-associated prot...   511   e-142
ref|XP_011087491.1| PREDICTED: RNA polymerase II-associated prot...   511   e-142
ref|XP_012840399.1| PREDICTED: RNA polymerase II-associated prot...   500   e-138
ref|XP_012840398.1| PREDICTED: RNA polymerase II-associated prot...   495   e-137
gb|EYU34893.1| hypothetical protein MIMGU_mgv1a005743mg [Erythra...   495   e-137
ref|XP_009767331.1| PREDICTED: RNA polymerase II-associated prot...   417   e-113
ref|XP_009767326.1| PREDICTED: RNA polymerase II-associated prot...   417   e-113
ref|XP_009767318.1| PREDICTED: RNA polymerase II-associated prot...   417   e-113
ref|XP_009767310.1| PREDICTED: RNA polymerase II-associated prot...   417   e-113
ref|XP_009767301.1| PREDICTED: RNA polymerase II-associated prot...   417   e-113
ref|XP_009611911.1| PREDICTED: RNA polymerase II-associated prot...   412   e-112
ref|XP_009611910.1| PREDICTED: RNA polymerase II-associated prot...   412   e-112
ref|XP_009611909.1| PREDICTED: RNA polymerase II-associated prot...   412   e-112
ref|XP_004248819.1| PREDICTED: RNA polymerase II-associated prot...   410   e-111
ref|XP_009767339.1| PREDICTED: RNA polymerase II-associated prot...   408   e-111
ref|XP_010327507.1| PREDICTED: RNA polymerase II-associated prot...   406   e-110
ref|XP_006339932.1| PREDICTED: RNA polymerase II-associated prot...   404   e-110
ref|XP_009611912.1| PREDICTED: RNA polymerase II-associated prot...   401   e-109
ref|XP_006339933.1| PREDICTED: RNA polymerase II-associated prot...   400   e-108
ref|XP_006382392.1| hypothetical protein POPTR_0005s01710g [Popu...   400   e-108

>ref|XP_011087492.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Sesamum
            indicum]
          Length = 470

 Score =  511 bits (1317), Expect = e-142
 Identities = 273/382 (71%), Positives = 304/382 (79%), Gaps = 8/382 (2%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            YEALSRL+  + SQE  VDANSEKELGNEFFKQKKF +AIDCYSRSIALSPTAVAYANRA
Sbjct: 89   YEALSRLSGGIQSQESFVDANSEKELGNEFFKQKKFVDAIDCYSRSIALSPTAVAYANRA 148

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAYIK+KRF EAENDCTEAL+LDDRYIKAYSRRSTARKELGKL ESIDD EFALRLEPQN
Sbjct: 149  MAYIKLKRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESIDDAEFALRLEPQN 208

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQEKVEVDKKK-------YATSSPAGR 894
            QEIKKQYAE K+LL+K ILKK SG LAGS+ GA+  K EVDK K        +TSSP GR
Sbjct: 209  QEIKKQYAELKSLLQKEILKKASGGLAGSVRGAQPGKPEVDKNKNVQKLQAVSTSSPEGR 268

Query: 893  VAKFVEDDSKA-NIREVSRQTSMENKGNSIPSNESHAGTVSECAKRKPQSSKLELRASVQ 717
            VA+ +E+  +  NIR+V+ +TSME + N+I S      T S  AK+K + +K ELRASVQ
Sbjct: 269  VAEILEEHPEGNNIRDVAAETSMEVETNNIRSTGFKPDTGSGTAKKKTKDTKQELRASVQ 328

Query: 716  XXXXXXXXXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKNA 537
                           KNI PP SAYQFE SWRG SGDR+LQARLLKVTSP ALPG+FKNA
Sbjct: 329  ELAAKAASLAKAEAAKNIVPPNSAYQFEVSWRGFSGDRDLQARLLKVTSPTALPGIFKNA 388

Query: 536  LSAPILIDIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEVF 357
            LSA IL+D+IRCIATFF EDM LGVEYLQN  K+PRFDMIIMCLSP +KADL KIWNEVF
Sbjct: 389  LSASILVDVIRCIATFFTEDMALGVEYLQNLAKIPRFDMIIMCLSPLDKADLSKIWNEVF 448

Query: 356  SKGTTEYAEILGNLRPKYGIKQ 291
            SKG T+Y +ILGNLR +YGIKQ
Sbjct: 449  SKGMTDYTDILGNLRLRYGIKQ 470


>ref|XP_011087491.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Sesamum
            indicum]
          Length = 476

 Score =  511 bits (1317), Expect = e-142
 Identities = 273/382 (71%), Positives = 304/382 (79%), Gaps = 8/382 (2%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            YEALSRL+  + SQE  VDANSEKELGNEFFKQKKF +AIDCYSRSIALSPTAVAYANRA
Sbjct: 95   YEALSRLSGGIQSQESFVDANSEKELGNEFFKQKKFVDAIDCYSRSIALSPTAVAYANRA 154

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAYIK+KRF EAENDCTEAL+LDDRYIKAYSRRSTARKELGKL ESIDD EFALRLEPQN
Sbjct: 155  MAYIKLKRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESIDDAEFALRLEPQN 214

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQEKVEVDKKK-------YATSSPAGR 894
            QEIKKQYAE K+LL+K ILKK SG LAGS+ GA+  K EVDK K        +TSSP GR
Sbjct: 215  QEIKKQYAELKSLLQKEILKKASGGLAGSVRGAQPGKPEVDKNKNVQKLQAVSTSSPEGR 274

Query: 893  VAKFVEDDSKA-NIREVSRQTSMENKGNSIPSNESHAGTVSECAKRKPQSSKLELRASVQ 717
            VA+ +E+  +  NIR+V+ +TSME + N+I S      T S  AK+K + +K ELRASVQ
Sbjct: 275  VAEILEEHPEGNNIRDVAAETSMEVETNNIRSTGFKPDTGSGTAKKKTKDTKQELRASVQ 334

Query: 716  XXXXXXXXXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKNA 537
                           KNI PP SAYQFE SWRG SGDR+LQARLLKVTSP ALPG+FKNA
Sbjct: 335  ELAAKAASLAKAEAAKNIVPPNSAYQFEVSWRGFSGDRDLQARLLKVTSPTALPGIFKNA 394

Query: 536  LSAPILIDIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEVF 357
            LSA IL+D+IRCIATFF EDM LGVEYLQN  K+PRFDMIIMCLSP +KADL KIWNEVF
Sbjct: 395  LSASILVDVIRCIATFFTEDMALGVEYLQNLAKIPRFDMIIMCLSPLDKADLSKIWNEVF 454

Query: 356  SKGTTEYAEILGNLRPKYGIKQ 291
            SKG T+Y +ILGNLR +YGIKQ
Sbjct: 455  SKGMTDYTDILGNLRLRYGIKQ 476


>ref|XP_012840399.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2
            [Erythranthe guttatus]
          Length = 469

 Score =  500 bits (1288), Expect = e-138
 Identities = 263/374 (70%), Positives = 298/374 (79%), Gaps = 1/374 (0%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            YEALSRL+S V S E  VDANSEKELGNEFFKQKKF EAIDCYSRSIALSP+AVAYANRA
Sbjct: 95   YEALSRLSSAVPSTESFVDANSEKELGNEFFKQKKFTEAIDCYSRSIALSPSAVAYANRA 154

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAYIK++RF EAENDCTEAL+LDDRYIKAYSRRSTARKELGKL ES+DD EFALRLEPQN
Sbjct: 155  MAYIKIRRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESMDDAEFALRLEPQN 214

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQEKVEVDKKKYATSSPAGRVAKFVED 873
            QEIKKQ+AE K+LLEK ILKK SG L GS++GA+  K EVDK        +GRV + +E+
Sbjct: 215  QEIKKQFAESKSLLEKAILKKVSGALTGSVEGAQPGKSEVDKNNNVQKPLSGRVTEILEE 274

Query: 872  DSKAN-IREVSRQTSMENKGNSIPSNESHAGTVSECAKRKPQSSKLELRASVQXXXXXXX 696
            + K N  REV+  TSME K NS+ SN S   T SE AK KP++ K +L+ASVQ       
Sbjct: 275  NPKGNKSREVTADTSMEIKQNSVRSNGSDVITDSETAKTKPKNGKQQLKASVQELAAKAA 334

Query: 695  XXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKNALSAPILI 516
                    KNI PP SAYQFE SWRGLS DR LQ RLL+VTSPAALPG+FKNALSAPIL+
Sbjct: 335  NLAKAEAAKNIVPPNSAYQFEVSWRGLSNDRNLQTRLLQVTSPAALPGIFKNALSAPILV 394

Query: 515  DIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEVFSKGTTEY 336
            DIIRCIATFF+EDM L V+YLQN TK+PRFDMIIMCLS A+K+D+ KIW+EVF KGT +Y
Sbjct: 395  DIIRCIATFFVEDMALAVDYLQNLTKIPRFDMIIMCLSSADKSDVSKIWDEVFIKGTADY 454

Query: 335  AEILGNLRPKYGIK 294
             EIL +LR +YGIK
Sbjct: 455  GEILRDLRIRYGIK 468


>ref|XP_012840398.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1
            [Erythranthe guttatus] gi|604329640|gb|EYU34894.1|
            hypothetical protein MIMGU_mgv1a005743mg [Erythranthe
            guttata]
          Length = 472

 Score =  495 bits (1274), Expect = e-137
 Identities = 263/377 (69%), Positives = 298/377 (79%), Gaps = 4/377 (1%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            YEALSRL+S V S E  VDANSEKELGNEFFKQKKF EAIDCYSRSIALSP+AVAYANRA
Sbjct: 95   YEALSRLSSAVPSTESFVDANSEKELGNEFFKQKKFTEAIDCYSRSIALSPSAVAYANRA 154

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAYIK++RF EAENDCTEAL+LDDRYIKAYSRRSTARKELGKL ES+DD EFALRLEPQN
Sbjct: 155  MAYIKIRRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESMDDAEFALRLEPQN 214

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQEKVEVDKKKYATSSPAGRVAKFVED 873
            QEIKKQ+AE K+LLEK ILKK SG L GS++GA+  K EVDK        +GRV + +E+
Sbjct: 215  QEIKKQFAESKSLLEKAILKKVSGALTGSVEGAQPGKSEVDKNNNVQKPLSGRVTEILEE 274

Query: 872  DSKAN-IREVSRQTSMENKGNSIPSNESHAGTVSECAK---RKPQSSKLELRASVQXXXX 705
            + K N  REV+  TSME K NS+ SN S   T SE AK    KP++ K +L+ASVQ    
Sbjct: 275  NPKGNKSREVTADTSMEIKQNSVRSNGSDVITDSETAKLSQTKPKNGKQQLKASVQELAA 334

Query: 704  XXXXXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKNALSAP 525
                       KNI PP SAYQFE SWRGLS DR LQ RLL+VTSPAALPG+FKNALSAP
Sbjct: 335  KAANLAKAEAAKNIVPPNSAYQFEVSWRGLSNDRNLQTRLLQVTSPAALPGIFKNALSAP 394

Query: 524  ILIDIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEVFSKGT 345
            IL+DIIRCIATFF+EDM L V+YLQN TK+PRFDMIIMCLS A+K+D+ KIW+EVF KGT
Sbjct: 395  ILVDIIRCIATFFVEDMALAVDYLQNLTKIPRFDMIIMCLSSADKSDVSKIWDEVFIKGT 454

Query: 344  TEYAEILGNLRPKYGIK 294
             +Y EIL +LR +YGIK
Sbjct: 455  ADYGEILRDLRIRYGIK 471


>gb|EYU34893.1| hypothetical protein MIMGU_mgv1a005743mg [Erythranthe guttata]
          Length = 462

 Score =  495 bits (1274), Expect = e-137
 Identities = 263/377 (69%), Positives = 298/377 (79%), Gaps = 4/377 (1%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            YEALSRL+S V S E  VDANSEKELGNEFFKQKKF EAIDCYSRSIALSP+AVAYANRA
Sbjct: 85   YEALSRLSSAVPSTESFVDANSEKELGNEFFKQKKFTEAIDCYSRSIALSPSAVAYANRA 144

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAYIK++RF EAENDCTEAL+LDDRYIKAYSRRSTARKELGKL ES+DD EFALRLEPQN
Sbjct: 145  MAYIKIRRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESMDDAEFALRLEPQN 204

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQEKVEVDKKKYATSSPAGRVAKFVED 873
            QEIKKQ+AE K+LLEK ILKK SG L GS++GA+  K EVDK        +GRV + +E+
Sbjct: 205  QEIKKQFAESKSLLEKAILKKVSGALTGSVEGAQPGKSEVDKNNNVQKPLSGRVTEILEE 264

Query: 872  DSKAN-IREVSRQTSMENKGNSIPSNESHAGTVSECAK---RKPQSSKLELRASVQXXXX 705
            + K N  REV+  TSME K NS+ SN S   T SE AK    KP++ K +L+ASVQ    
Sbjct: 265  NPKGNKSREVTADTSMEIKQNSVRSNGSDVITDSETAKLSQTKPKNGKQQLKASVQELAA 324

Query: 704  XXXXXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKNALSAP 525
                       KNI PP SAYQFE SWRGLS DR LQ RLL+VTSPAALPG+FKNALSAP
Sbjct: 325  KAANLAKAEAAKNIVPPNSAYQFEVSWRGLSNDRNLQTRLLQVTSPAALPGIFKNALSAP 384

Query: 524  ILIDIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEVFSKGT 345
            IL+DIIRCIATFF+EDM L V+YLQN TK+PRFDMIIMCLS A+K+D+ KIW+EVF KGT
Sbjct: 385  ILVDIIRCIATFFVEDMALAVDYLQNLTKIPRFDMIIMCLSSADKSDVSKIWDEVFIKGT 444

Query: 344  TEYAEILGNLRPKYGIK 294
             +Y EIL +LR +YGIK
Sbjct: 445  ADYGEILRDLRIRYGIK 461


>ref|XP_009767331.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X5
            [Nicotiana sylvestris]
          Length = 449

 Score =  417 bits (1072), Expect = e-113
 Identities = 231/378 (61%), Positives = 272/378 (71%), Gaps = 6/378 (1%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            Y   S L+S + S+E  +DANSEKELGNEFFKQKKF EAIDCYSRSIALSPTAVAYANRA
Sbjct: 73   YNPTSHLSSEMLSEESNIDANSEKELGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRA 132

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAY+K+KRF EAENDCTEAL+LDDRYIKAYSRRSTARKELGKL ESI+D EFA RLEPQN
Sbjct: 133  MAYLKLKRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESIEDAEFASRLEPQN 192

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQE-KVEVDKKKYATSSPAGRVAKFVE 876
            QEIKKQY E KAL EK ILK+ SG    S  GA+   K         +   + +VA+  +
Sbjct: 193  QEIKKQYGEVKALYEKEILKRVSGATGVSAQGAQNTGKTNKTGPVIQSVGSSQKVAEVRK 252

Query: 875  DDSKANIREVSRQTSMENKG-----NSIPSNESHAGTVSECAKRKPQSSKLELRASVQXX 711
              +K + R+V   T+ME +      NS  S+ S        AKR  ++SK EL+ SVQ  
Sbjct: 253  IPAKESSRDVP-GTAMEVEDTHMQINSKGSDASATVPTLNPAKRPHKNSKQELKESVQEL 311

Query: 710  XXXXXXXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKNALS 531
                         KNIAPP SAYQFE SWRGLSGDR+LQ  LLKVTSP+ LP +FKNALS
Sbjct: 312  AARAASLAKAEAAKNIAPPNSAYQFEVSWRGLSGDRDLQTHLLKVTSPSMLPQIFKNALS 371

Query: 530  APILIDIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEVFSK 351
            AP+L+DI+RC+ATF +EDM L + YL+N TKVPRFDMIIMCLS  +KA+L+KIW+EVF K
Sbjct: 372  APMLMDIVRCVATFSIEDMDLAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCK 431

Query: 350  GTTEYAEILGNLRPKYGI 297
            G  E++  LG LR KYG+
Sbjct: 432  GAEEHSATLGALRLKYGL 449


>ref|XP_009767326.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X4
            [Nicotiana sylvestris]
          Length = 454

 Score =  417 bits (1072), Expect = e-113
 Identities = 231/378 (61%), Positives = 272/378 (71%), Gaps = 6/378 (1%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            Y   S L+S + S+E  +DANSEKELGNEFFKQKKF EAIDCYSRSIALSPTAVAYANRA
Sbjct: 78   YNPTSHLSSEMLSEESNIDANSEKELGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRA 137

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAY+K+KRF EAENDCTEAL+LDDRYIKAYSRRSTARKELGKL ESI+D EFA RLEPQN
Sbjct: 138  MAYLKLKRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESIEDAEFASRLEPQN 197

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQE-KVEVDKKKYATSSPAGRVAKFVE 876
            QEIKKQY E KAL EK ILK+ SG    S  GA+   K         +   + +VA+  +
Sbjct: 198  QEIKKQYGEVKALYEKEILKRVSGATGVSAQGAQNTGKTNKTGPVIQSVGSSQKVAEVRK 257

Query: 875  DDSKANIREVSRQTSMENKG-----NSIPSNESHAGTVSECAKRKPQSSKLELRASVQXX 711
              +K + R+V   T+ME +      NS  S+ S        AKR  ++SK EL+ SVQ  
Sbjct: 258  IPAKESSRDVP-GTAMEVEDTHMQINSKGSDASATVPTLNPAKRPHKNSKQELKESVQEL 316

Query: 710  XXXXXXXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKNALS 531
                         KNIAPP SAYQFE SWRGLSGDR+LQ  LLKVTSP+ LP +FKNALS
Sbjct: 317  AARAASLAKAEAAKNIAPPNSAYQFEVSWRGLSGDRDLQTHLLKVTSPSMLPQIFKNALS 376

Query: 530  APILIDIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEVFSK 351
            AP+L+DI+RC+ATF +EDM L + YL+N TKVPRFDMIIMCLS  +KA+L+KIW+EVF K
Sbjct: 377  APMLMDIVRCVATFSIEDMDLAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCK 436

Query: 350  GTTEYAEILGNLRPKYGI 297
            G  E++  LG LR KYG+
Sbjct: 437  GAEEHSATLGALRLKYGL 454


>ref|XP_009767318.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X3
            [Nicotiana sylvestris]
          Length = 461

 Score =  417 bits (1072), Expect = e-113
 Identities = 231/378 (61%), Positives = 272/378 (71%), Gaps = 6/378 (1%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            Y   S L+S + S+E  +DANSEKELGNEFFKQKKF EAIDCYSRSIALSPTAVAYANRA
Sbjct: 85   YNPTSHLSSEMLSEESNIDANSEKELGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRA 144

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAY+K+KRF EAENDCTEAL+LDDRYIKAYSRRSTARKELGKL ESI+D EFA RLEPQN
Sbjct: 145  MAYLKLKRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESIEDAEFASRLEPQN 204

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQE-KVEVDKKKYATSSPAGRVAKFVE 876
            QEIKKQY E KAL EK ILK+ SG    S  GA+   K         +   + +VA+  +
Sbjct: 205  QEIKKQYGEVKALYEKEILKRVSGATGVSAQGAQNTGKTNKTGPVIQSVGSSQKVAEVRK 264

Query: 875  DDSKANIREVSRQTSMENKG-----NSIPSNESHAGTVSECAKRKPQSSKLELRASVQXX 711
              +K + R+V   T+ME +      NS  S+ S        AKR  ++SK EL+ SVQ  
Sbjct: 265  IPAKESSRDVP-GTAMEVEDTHMQINSKGSDASATVPTLNPAKRPHKNSKQELKESVQEL 323

Query: 710  XXXXXXXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKNALS 531
                         KNIAPP SAYQFE SWRGLSGDR+LQ  LLKVTSP+ LP +FKNALS
Sbjct: 324  AARAASLAKAEAAKNIAPPNSAYQFEVSWRGLSGDRDLQTHLLKVTSPSMLPQIFKNALS 383

Query: 530  APILIDIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEVFSK 351
            AP+L+DI+RC+ATF +EDM L + YL+N TKVPRFDMIIMCLS  +KA+L+KIW+EVF K
Sbjct: 384  APMLMDIVRCVATFSIEDMDLAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCK 443

Query: 350  GTTEYAEILGNLRPKYGI 297
            G  E++  LG LR KYG+
Sbjct: 444  GAEEHSATLGALRLKYGL 461


>ref|XP_009767310.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2
            [Nicotiana sylvestris]
          Length = 464

 Score =  417 bits (1072), Expect = e-113
 Identities = 231/378 (61%), Positives = 272/378 (71%), Gaps = 6/378 (1%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            Y   S L+S + S+E  +DANSEKELGNEFFKQKKF EAIDCYSRSIALSPTAVAYANRA
Sbjct: 88   YNPTSHLSSEMLSEESNIDANSEKELGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRA 147

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAY+K+KRF EAENDCTEAL+LDDRYIKAYSRRSTARKELGKL ESI+D EFA RLEPQN
Sbjct: 148  MAYLKLKRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESIEDAEFASRLEPQN 207

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQE-KVEVDKKKYATSSPAGRVAKFVE 876
            QEIKKQY E KAL EK ILK+ SG    S  GA+   K         +   + +VA+  +
Sbjct: 208  QEIKKQYGEVKALYEKEILKRVSGATGVSAQGAQNTGKTNKTGPVIQSVGSSQKVAEVRK 267

Query: 875  DDSKANIREVSRQTSMENKG-----NSIPSNESHAGTVSECAKRKPQSSKLELRASVQXX 711
              +K + R+V   T+ME +      NS  S+ S        AKR  ++SK EL+ SVQ  
Sbjct: 268  IPAKESSRDVP-GTAMEVEDTHMQINSKGSDASATVPTLNPAKRPHKNSKQELKESVQEL 326

Query: 710  XXXXXXXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKNALS 531
                         KNIAPP SAYQFE SWRGLSGDR+LQ  LLKVTSP+ LP +FKNALS
Sbjct: 327  AARAASLAKAEAAKNIAPPNSAYQFEVSWRGLSGDRDLQTHLLKVTSPSMLPQIFKNALS 386

Query: 530  APILIDIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEVFSK 351
            AP+L+DI+RC+ATF +EDM L + YL+N TKVPRFDMIIMCLS  +KA+L+KIW+EVF K
Sbjct: 387  APMLMDIVRCVATFSIEDMDLAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCK 446

Query: 350  GTTEYAEILGNLRPKYGI 297
            G  E++  LG LR KYG+
Sbjct: 447  GAEEHSATLGALRLKYGL 464


>ref|XP_009767301.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1
            [Nicotiana sylvestris]
          Length = 484

 Score =  417 bits (1072), Expect = e-113
 Identities = 231/378 (61%), Positives = 272/378 (71%), Gaps = 6/378 (1%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            Y   S L+S + S+E  +DANSEKELGNEFFKQKKF EAIDCYSRSIALSPTAVAYANRA
Sbjct: 108  YNPTSHLSSEMLSEESNIDANSEKELGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRA 167

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAY+K+KRF EAENDCTEAL+LDDRYIKAYSRRSTARKELGKL ESI+D EFA RLEPQN
Sbjct: 168  MAYLKLKRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESIEDAEFASRLEPQN 227

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQE-KVEVDKKKYATSSPAGRVAKFVE 876
            QEIKKQY E KAL EK ILK+ SG    S  GA+   K         +   + +VA+  +
Sbjct: 228  QEIKKQYGEVKALYEKEILKRVSGATGVSAQGAQNTGKTNKTGPVIQSVGSSQKVAEVRK 287

Query: 875  DDSKANIREVSRQTSMENKG-----NSIPSNESHAGTVSECAKRKPQSSKLELRASVQXX 711
              +K + R+V   T+ME +      NS  S+ S        AKR  ++SK EL+ SVQ  
Sbjct: 288  IPAKESSRDVP-GTAMEVEDTHMQINSKGSDASATVPTLNPAKRPHKNSKQELKESVQEL 346

Query: 710  XXXXXXXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKNALS 531
                         KNIAPP SAYQFE SWRGLSGDR+LQ  LLKVTSP+ LP +FKNALS
Sbjct: 347  AARAASLAKAEAAKNIAPPNSAYQFEVSWRGLSGDRDLQTHLLKVTSPSMLPQIFKNALS 406

Query: 530  APILIDIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEVFSK 351
            AP+L+DI+RC+ATF +EDM L + YL+N TKVPRFDMIIMCLS  +KA+L+KIW+EVF K
Sbjct: 407  APMLMDIVRCVATFSIEDMDLAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCK 466

Query: 350  GTTEYAEILGNLRPKYGI 297
            G  E++  LG LR KYG+
Sbjct: 467  GAEEHSATLGALRLKYGL 484


>ref|XP_009611911.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X3
            [Nicotiana tomentosiformis]
          Length = 455

 Score =  412 bits (1059), Expect = e-112
 Identities = 232/380 (61%), Positives = 270/380 (71%), Gaps = 8/380 (2%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            Y   S L+S + S+E  +DANSEKELGNEFFKQKKF EAI CYSRSIALSPTAVAYANRA
Sbjct: 78   YNPTSHLSSEMLSEESNIDANSEKELGNEFFKQKKFKEAIICYSRSIALSPTAVAYANRA 137

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAY+K+KRF EAENDCTEAL+LDDRYIKAYSRRSTARKELGKL ESI+D EFA RLEPQN
Sbjct: 138  MAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESIEDAEFASRLEPQN 197

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQEKVEVDKKKYATSSPAG---RVAKF 882
            QEIKKQY E KAL EK ILK+ S     S  GA Q+  + +K      S +G   +VA+ 
Sbjct: 198  QEIKKQYGEVKALYEKEILKRVSAATGVSAQGA-QKTGKTNKTGPVIQSVSGSSQKVAEV 256

Query: 881  VEDDSKANIREVSRQTSMENKG-----NSIPSNESHAGTVSECAKRKPQSSKLELRASVQ 717
             +  +K N R+V   T+ME +      NS  S+ S        AKR  ++SK EL+ SVQ
Sbjct: 257  RKIPAKENNRDVP-GTAMEVEDTHMQINSKDSDASATVPTLNPAKRTHKNSKQELKESVQ 315

Query: 716  XXXXXXXXXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKNA 537
                           KNIAPP SAYQFE SWRGLSGDR LQ  LLKVTSPA LP +FKNA
Sbjct: 316  ELAARAASLAKAEAAKNIAPPNSAYQFEVSWRGLSGDRNLQTHLLKVTSPATLPQIFKNA 375

Query: 536  LSAPILIDIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEVF 357
            LSAP+L+DI+RC+ATF +EDM L + YL+N TKVPRFDMIIMCLS  +KA+L+KIW+EVF
Sbjct: 376  LSAPMLMDIVRCVATFSIEDMDLAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVF 435

Query: 356  SKGTTEYAEILGNLRPKYGI 297
             KG  E+   L  LR  YG+
Sbjct: 436  CKGAEEHTATLSALRLNYGL 455


>ref|XP_009611910.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2
            [Nicotiana tomentosiformis]
          Length = 462

 Score =  412 bits (1059), Expect = e-112
 Identities = 232/380 (61%), Positives = 270/380 (71%), Gaps = 8/380 (2%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            Y   S L+S + S+E  +DANSEKELGNEFFKQKKF EAI CYSRSIALSPTAVAYANRA
Sbjct: 85   YNPTSHLSSEMLSEESNIDANSEKELGNEFFKQKKFKEAIICYSRSIALSPTAVAYANRA 144

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAY+K+KRF EAENDCTEAL+LDDRYIKAYSRRSTARKELGKL ESI+D EFA RLEPQN
Sbjct: 145  MAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESIEDAEFASRLEPQN 204

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQEKVEVDKKKYATSSPAG---RVAKF 882
            QEIKKQY E KAL EK ILK+ S     S  GA Q+  + +K      S +G   +VA+ 
Sbjct: 205  QEIKKQYGEVKALYEKEILKRVSAATGVSAQGA-QKTGKTNKTGPVIQSVSGSSQKVAEV 263

Query: 881  VEDDSKANIREVSRQTSMENKG-----NSIPSNESHAGTVSECAKRKPQSSKLELRASVQ 717
             +  +K N R+V   T+ME +      NS  S+ S        AKR  ++SK EL+ SVQ
Sbjct: 264  RKIPAKENNRDVP-GTAMEVEDTHMQINSKDSDASATVPTLNPAKRTHKNSKQELKESVQ 322

Query: 716  XXXXXXXXXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKNA 537
                           KNIAPP SAYQFE SWRGLSGDR LQ  LLKVTSPA LP +FKNA
Sbjct: 323  ELAARAASLAKAEAAKNIAPPNSAYQFEVSWRGLSGDRNLQTHLLKVTSPATLPQIFKNA 382

Query: 536  LSAPILIDIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEVF 357
            LSAP+L+DI+RC+ATF +EDM L + YL+N TKVPRFDMIIMCLS  +KA+L+KIW+EVF
Sbjct: 383  LSAPMLMDIVRCVATFSIEDMDLAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVF 442

Query: 356  SKGTTEYAEILGNLRPKYGI 297
             KG  E+   L  LR  YG+
Sbjct: 443  CKGAEEHTATLSALRLNYGL 462


>ref|XP_009611909.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1
            [Nicotiana tomentosiformis]
          Length = 465

 Score =  412 bits (1059), Expect = e-112
 Identities = 232/380 (61%), Positives = 270/380 (71%), Gaps = 8/380 (2%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            Y   S L+S + S+E  +DANSEKELGNEFFKQKKF EAI CYSRSIALSPTAVAYANRA
Sbjct: 88   YNPTSHLSSEMLSEESNIDANSEKELGNEFFKQKKFKEAIICYSRSIALSPTAVAYANRA 147

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAY+K+KRF EAENDCTEAL+LDDRYIKAYSRRSTARKELGKL ESI+D EFA RLEPQN
Sbjct: 148  MAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESIEDAEFASRLEPQN 207

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQEKVEVDKKKYATSSPAG---RVAKF 882
            QEIKKQY E KAL EK ILK+ S     S  GA Q+  + +K      S +G   +VA+ 
Sbjct: 208  QEIKKQYGEVKALYEKEILKRVSAATGVSAQGA-QKTGKTNKTGPVIQSVSGSSQKVAEV 266

Query: 881  VEDDSKANIREVSRQTSMENKG-----NSIPSNESHAGTVSECAKRKPQSSKLELRASVQ 717
             +  +K N R+V   T+ME +      NS  S+ S        AKR  ++SK EL+ SVQ
Sbjct: 267  RKIPAKENNRDVP-GTAMEVEDTHMQINSKDSDASATVPTLNPAKRTHKNSKQELKESVQ 325

Query: 716  XXXXXXXXXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKNA 537
                           KNIAPP SAYQFE SWRGLSGDR LQ  LLKVTSPA LP +FKNA
Sbjct: 326  ELAARAASLAKAEAAKNIAPPNSAYQFEVSWRGLSGDRNLQTHLLKVTSPATLPQIFKNA 385

Query: 536  LSAPILIDIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEVF 357
            LSAP+L+DI+RC+ATF +EDM L + YL+N TKVPRFDMIIMCLS  +KA+L+KIW+EVF
Sbjct: 386  LSAPMLMDIVRCVATFSIEDMDLAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVF 445

Query: 356  SKGTTEYAEILGNLRPKYGI 297
             KG  E+   L  LR  YG+
Sbjct: 446  CKGAEEHTATLSALRLNYGL 465


>ref|XP_004248819.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Solanum
            lycopersicum]
          Length = 470

 Score =  410 bits (1054), Expect = e-111
 Identities = 224/383 (58%), Positives = 272/383 (71%), Gaps = 9/383 (2%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            Y  +S L+S + S+E  ++ANSEKELGNE FKQKKFNEAIDCYSRSIALSPTAV+YANRA
Sbjct: 88   YNPISHLSSELISEESNINANSEKELGNECFKQKKFNEAIDCYSRSIALSPTAVSYANRA 147

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAY+K+KRF EAENDCTEAL+LDDRYIKAYSRRST+RKELGKL ESI+D EFAL LEP+N
Sbjct: 148  MAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRSTSRKELGKLKESIEDAEFALWLEPRN 207

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQ--EKVEVDKKKYATSSPAGRVAKFV 879
             EIKKQY E KAL EK ILK+ SG    S  G ++  + +++     + SS + +VA+  
Sbjct: 208  PEIKKQYGEVKALYEKEILKRVSGATDVSAQGPQKSGKTIKIGPVIQSVSSSSQKVAEVR 267

Query: 878  EDDSKANIREVSRQTSMENKGNSIPSNESHAGTVSE-------CAKRKPQSSKLELRASV 720
               +K N R+V     +E+    I + +S A             AK+  + SK EL  SV
Sbjct: 268  TIPAKENNRDVLGTAKVEDTHMQISNKDSDASPTVPTLNLAFGTAKKTHKISKQELEESV 327

Query: 719  QXXXXXXXXXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKN 540
            Q               KNIA P SAYQFE SWRGLSGDR LQ +LLKVTSPA LP +FKN
Sbjct: 328  QELAARAAGLAKTEAAKNIAAPNSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKN 387

Query: 539  ALSAPILIDIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEV 360
            ALSAP+L+DI+RCIATFF+EDM L + YL++ TKVPRFDMIIMCLS A+K++LLKIW E+
Sbjct: 388  ALSAPMLMDIVRCIATFFIEDMNLAIRYLEDLTKVPRFDMIIMCLSSADKSELLKIWEEI 447

Query: 359  FSKGTTEYAEILGNLRPKYGIKQ 291
            F K   E++  LG LR  YG+KQ
Sbjct: 448  FCKVAEEHSATLGALRVSYGLKQ 470


>ref|XP_009767339.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X6
            [Nicotiana sylvestris]
          Length = 446

 Score =  408 bits (1049), Expect = e-111
 Identities = 224/373 (60%), Positives = 260/373 (69%), Gaps = 1/373 (0%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            Y   S L+S + S+E  +DANSEKELGNEFFKQKKF EAIDCYSRSIALSPTAVAYANRA
Sbjct: 108  YNPTSHLSSEMLSEESNIDANSEKELGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRA 167

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAY+K+KRF EAENDCTEAL+LDDRYIKAYSRRSTARKELGKL ESI+D EFA RLEPQN
Sbjct: 168  MAYLKLKRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESIEDAEFASRLEPQN 227

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQEKVEVDKKKYATSSPAGRVAKFVED 873
            QEIKKQY E KAL EK ILK+ SG    S  GA+             ++  G V + V  
Sbjct: 228  QEIKKQYGEVKALYEKEILKRVSGATGVSAQGAQNT---------GKTNKTGPVIQSVGS 278

Query: 872  DSK-ANIREVSRQTSMENKGNSIPSNESHAGTVSECAKRKPQSSKLELRASVQXXXXXXX 696
              K A +R++                          AKR  ++SK EL+ SVQ       
Sbjct: 279  SQKVAEVRKIP-------------------------AKRPHKNSKQELKESVQELAARAA 313

Query: 695  XXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKNALSAPILI 516
                    KNIAPP SAYQFE SWRGLSGDR+LQ  LLKVTSP+ LP +FKNALSAP+L+
Sbjct: 314  SLAKAEAAKNIAPPNSAYQFEVSWRGLSGDRDLQTHLLKVTSPSMLPQIFKNALSAPMLM 373

Query: 515  DIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEVFSKGTTEY 336
            DI+RC+ATF +EDM L + YL+N TKVPRFDMIIMCLS  +KA+L+KIW+EVF KG  E+
Sbjct: 374  DIVRCVATFSIEDMDLAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCKGAEEH 433

Query: 335  AEILGNLRPKYGI 297
            +  LG LR KYG+
Sbjct: 434  SATLGALRLKYGL 446


>ref|XP_010327507.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Solanum
            lycopersicum]
          Length = 469

 Score =  406 bits (1044), Expect = e-110
 Identities = 224/383 (58%), Positives = 272/383 (71%), Gaps = 9/383 (2%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            Y  +S L+S + S+E  ++ANSEKELGNE FKQKKFNEAIDCYSRSIALSPTAV+YANRA
Sbjct: 88   YNPISHLSSELISEESNINANSEKELGNECFKQKKFNEAIDCYSRSIALSPTAVSYANRA 147

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAY+K+KRF EAENDCTEAL+LDDRYIKAYSRRST+RKELGKL ESI+D EFAL LEP+N
Sbjct: 148  MAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRSTSRKELGKLKESIEDAEFALWLEPRN 207

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQ--EKVEVDKKKYATSSPAGRVAKFV 879
             EIKKQY E KAL EK ILK+ SG    S  G ++  + +++     + SS + +VA+  
Sbjct: 208  PEIKKQYGEVKALYEK-ILKRVSGATDVSAQGPQKSGKTIKIGPVIQSVSSSSQKVAEVR 266

Query: 878  EDDSKANIREVSRQTSMENKGNSIPSNESHAGTVSE-------CAKRKPQSSKLELRASV 720
               +K N R+V     +E+    I + +S A             AK+  + SK EL  SV
Sbjct: 267  TIPAKENNRDVLGTAKVEDTHMQISNKDSDASPTVPTLNLAFGTAKKTHKISKQELEESV 326

Query: 719  QXXXXXXXXXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKN 540
            Q               KNIA P SAYQFE SWRGLSGDR LQ +LLKVTSPA LP +FKN
Sbjct: 327  QELAARAAGLAKTEAAKNIAAPNSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKN 386

Query: 539  ALSAPILIDIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEV 360
            ALSAP+L+DI+RCIATFF+EDM L + YL++ TKVPRFDMIIMCLS A+K++LLKIW E+
Sbjct: 387  ALSAPMLMDIVRCIATFFIEDMNLAIRYLEDLTKVPRFDMIIMCLSSADKSELLKIWEEI 446

Query: 359  FSKGTTEYAEILGNLRPKYGIKQ 291
            F K   E++  LG LR  YG+KQ
Sbjct: 447  FCKVAEEHSATLGALRVSYGLKQ 469


>ref|XP_006339932.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X1
            [Solanum tuberosum]
          Length = 468

 Score =  404 bits (1039), Expect = e-110
 Identities = 221/382 (57%), Positives = 269/382 (70%), Gaps = 9/382 (2%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            Y  +S L+S + S+E  ++ANSEKELGNE FKQKKFNEAIDCYSRSIALSPTAV+YANRA
Sbjct: 87   YNPISHLSSELISEESNINANSEKELGNECFKQKKFNEAIDCYSRSIALSPTAVSYANRA 146

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAY+K+KRF EAENDCTEAL+LDDRYIKAYSRRST+RKELGKL ESI+D EFALRLEPQN
Sbjct: 147  MAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRSTSRKELGKLKESIEDAEFALRLEPQN 206

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQ--EKVEVDKKKYATSSPAGRVAKFV 879
             EIKKQY E KAL EK I K+ SG    S   A++  + ++      + SS + ++A+  
Sbjct: 207  PEIKKQYGEVKALYEKEIRKRVSGATDVSAQRAQKSGKTIKSGPVIQSVSSSSQKMAEVW 266

Query: 878  EDDSKANIREVSRQTSMENKGNSIPSNESHAGTVSE-------CAKRKPQSSKLELRASV 720
               +K N R+V     +E+    I + +S A             AK+  + SK EL  SV
Sbjct: 267  TIPAKENNRDVPGTAKVEDTHMQINNKDSDASPTVPTLNPAFGTAKKTHKISKQELEESV 326

Query: 719  QXXXXXXXXXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKN 540
            Q               KNIA P SAYQFE SWRGLSGDR LQ +LLKVTSPA LP +FKN
Sbjct: 327  QELAARAAGLAKTEAAKNIAAPNSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKN 386

Query: 539  ALSAPILIDIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEV 360
            ALSAP+L+DI+RC+ATFF+EDM L + YL++ TKVPRFDMIIMCLS  +K++LLKIW E+
Sbjct: 387  ALSAPMLMDIVRCVATFFIEDMNLAIRYLEDLTKVPRFDMIIMCLSSTDKSELLKIWEEI 446

Query: 359  FSKGTTEYAEILGNLRPKYGIK 294
            F K   E++  LG LR  YG+K
Sbjct: 447  FCKEAEEHSATLGALRVPYGLK 468


>ref|XP_009611912.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X4
            [Nicotiana tomentosiformis]
          Length = 427

 Score =  401 bits (1031), Expect = e-109
 Identities = 224/372 (60%), Positives = 257/372 (69%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            Y   S L+S + S+E  +DANSEKELGNEFFKQKKF EAI CYSRSIALSPTAVAYANRA
Sbjct: 88   YNPTSHLSSEMLSEESNIDANSEKELGNEFFKQKKFKEAIICYSRSIALSPTAVAYANRA 147

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAY+K+KRF EAENDCTEAL+LDDRYIKAYSRRSTARKELGKL ESI+D EFA RLEPQN
Sbjct: 148  MAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESIEDAEFASRLEPQN 207

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQEKVEVDKKKYATSSPAGRVAKFVED 873
            QEIKKQY E KAL EK ILK+ S     S  GA         +K   ++  G V + V  
Sbjct: 208  QEIKKQYGEVKALYEKEILKRVSAATGVSAQGA---------QKTGKTNKTGPVIQSVSG 258

Query: 872  DSKANIREVSRQTSMENKGNSIPSNESHAGTVSECAKRKPQSSKLELRASVQXXXXXXXX 693
             S+  + EV +          IP            AKR  ++SK EL+ SVQ        
Sbjct: 259  SSQ-KVAEVRK----------IP------------AKRTHKNSKQELKESVQELAARAAS 295

Query: 692  XXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKNALSAPILID 513
                   KNIAPP SAYQFE SWRGLSGDR LQ  LLKVTSPA LP +FKNALSAP+L+D
Sbjct: 296  LAKAEAAKNIAPPNSAYQFEVSWRGLSGDRNLQTHLLKVTSPATLPQIFKNALSAPMLMD 355

Query: 512  IIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEVFSKGTTEYA 333
            I+RC+ATF +EDM L + YL+N TKVPRFDMIIMCLS  +KA+L+KIW+EVF KG  E+ 
Sbjct: 356  IVRCVATFSIEDMDLAIRYLENLTKVPRFDMIIMCLSSTDKAELVKIWDEVFCKGAEEHT 415

Query: 332  EILGNLRPKYGI 297
              L  LR  YG+
Sbjct: 416  ATLSALRLNYGL 427


>ref|XP_006339933.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X2
            [Solanum tuberosum]
          Length = 467

 Score =  400 bits (1029), Expect = e-108
 Identities = 221/382 (57%), Positives = 269/382 (70%), Gaps = 9/382 (2%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            Y  +S L+S + S+E  ++ANSEKELGNE FKQKKFNEAIDCYSRSIALSPTAV+YANRA
Sbjct: 87   YNPISHLSSELISEESNINANSEKELGNECFKQKKFNEAIDCYSRSIALSPTAVSYANRA 146

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAY+K+KRF EAENDCTEAL+LDDRYIKAYSRRST+RKELGKL ESI+D EFALRLEPQN
Sbjct: 147  MAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRSTSRKELGKLKESIEDAEFALRLEPQN 206

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQ--EKVEVDKKKYATSSPAGRVAKFV 879
             EIKKQY E KAL EK I K+ SG    S   A++  + ++      + SS + ++A+  
Sbjct: 207  PEIKKQYGEVKALYEK-IRKRVSGATDVSAQRAQKSGKTIKSGPVIQSVSSSSQKMAEVW 265

Query: 878  EDDSKANIREVSRQTSMENKGNSIPSNESHAGTVSE-------CAKRKPQSSKLELRASV 720
               +K N R+V     +E+    I + +S A             AK+  + SK EL  SV
Sbjct: 266  TIPAKENNRDVPGTAKVEDTHMQINNKDSDASPTVPTLNPAFGTAKKTHKISKQELEESV 325

Query: 719  QXXXXXXXXXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLKVTSPAALPGMFKN 540
            Q               KNIA P SAYQFE SWRGLSGDR LQ +LLKVTSPA LP +FKN
Sbjct: 326  QELAARAAGLAKTEAAKNIAAPNSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKN 385

Query: 539  ALSAPILIDIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSPANKADLLKIWNEV 360
            ALSAP+L+DI+RC+ATFF+EDM L + YL++ TKVPRFDMIIMCLS  +K++LLKIW E+
Sbjct: 386  ALSAPMLMDIVRCVATFFIEDMNLAIRYLEDLTKVPRFDMIIMCLSSTDKSELLKIWEEI 445

Query: 359  FSKGTTEYAEILGNLRPKYGIK 294
            F K   E++  LG LR  YG+K
Sbjct: 446  FCKEAEEHSATLGALRVPYGLK 467


>ref|XP_006382392.1| hypothetical protein POPTR_0005s01710g [Populus trichocarpa]
            gi|550337752|gb|ERP60189.1| hypothetical protein
            POPTR_0005s01710g [Populus trichocarpa]
          Length = 462

 Score =  400 bits (1028), Expect = e-108
 Identities = 220/394 (55%), Positives = 276/394 (70%), Gaps = 24/394 (6%)
 Frame = -2

Query: 1412 YEALSRLTSRVSSQEGVVDANSEKELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRA 1233
            + A++RL+S  ++ E  VDA +EKELGNE+FKQKKFNEAI+CYSRSIALSPTAVAYANRA
Sbjct: 66   FGAINRLSSSFTTDEITVDATTEKELGNEYFKQKKFNEAIECYSRSIALSPTAVAYANRA 125

Query: 1232 MAYIKVKRFLEAENDCTEALDLDDRYIKAYSRRSTARKELGKLNESIDDIEFALRLEPQN 1053
            MAY+K+KRF EAE+DCTEAL+LDDRYIKAYSRR+TARKELGKL ESI+D EFAL+LEP N
Sbjct: 126  MAYLKIKRFREAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALKLEPNN 185

Query: 1052 QEIKKQYAECKALLEKVILKKTSGPLAGSLDGARQ-------------EKVEVDKKKYAT 912
            QEIKKQYAE K+L EK IL+K SG L  SL G +Q               V +  +K   
Sbjct: 186  QEIKKQYAEVKSLYEKEILQKASGTLRSSLQGTQQGGRSEASVNGHAVHPVSIATQKTGV 245

Query: 911  SSPAGRVAKFVEDDSKAN--------IREV-SRQTSMENKGNSIPSNESHAGTVSECAKR 759
            S+      K  ++++  N        ++E+ +R  S  + GN  P+N + + +V E  ++
Sbjct: 246  SASKKDNTKLEQEENDGNNLVKKSVHVKELRNRSKSDGHVGNDSPANATPSSSV-ESVQK 304

Query: 758  KPQSSKLELRASVQXXXXXXXXXXXXXXXKNIAPPTSAYQFEASWRGLSGDRELQARLLK 579
              ++ + EL+ SV                KNI PP SAYQFE SW+G SGDR LQA LLK
Sbjct: 305  NNRTRRQELKTSVIELASQAASRAMAEAAKNITPPNSAYQFEVSWQGFSGDRALQAHLLK 364

Query: 578  VTSPAALPGMFKNALSAPILIDIIRCIATFFMEDMVLGVEYLQNFTKVPRFDMIIMCLSP 399
            VTSP+ALP +FKNALS PILIDII+C+A+FF +DM   V+YL+N TKVPRFDM+IMCLS 
Sbjct: 365  VTSPSALPQIFKNALSVPILIDIIKCVASFFNDDMDFAVKYLENLTKVPRFDMLIMCLSS 424

Query: 398  ANKADLLKIWNEVFSKGTT--EYAEILGNLRPKY 303
             + +DLLK+W+ VF   +T  EYAEIL NLR KY
Sbjct: 425  TDTSDLLKMWDGVFCSASTPIEYAEILDNLRSKY 458